EBG00000313339 - n.454T>C
Drug resistance types
4 Sensitive
34 RR-TB
31 HR-TB
96 MDR-TB
6 Pre-XDR-TB
2 XDR-TB
26 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| lineage4.1.1.3 | 5 |
| lineage4.1.2.1 | 15 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 3 |
| lineage2.1;lineage2.2;lineage6.3 | 1 |
| lineage2.1;lineage4.9 | 5 |
| lineage6.1.1 | 2 |
| lineage2.2 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 12 |
| La1.7.X-unk4;lineage4.9 | 1 |
| lineage4.3.4.2 | 3 |
| lineage4.9 | 22 |
| lineage4.6.1.2 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| La1.6;La3;lineage4.9 | 2 |
| lineage2.2.1 | 10 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 4 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.2 | 3 |
| lineage4.3.4.1 | 3 |
| La3;M.canetti;lineage2.1;lineage4.9 | 12 |
| lineage4.9;lineage9 | 2 |
| lineage1.1.2 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage2.1;lineage4.1.1.1;lineage6.3 | 2 |
| lineage4.9;lineage6.3 | 2 |
| lineage4.3.2;lineage4.9 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| lineage4.5 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage1.1.1 | 1 |
| lineage4.2;lineage4.9 | 1 |
| lineage4.6.2.2 | 4 |
| lineage4.2;lineage4.8.1;lineage4.9 | 1 |
| lineage4.3.4.2.1 | 2 |
| lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | 1 |
| lineage1.2.1.2.1 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 1 |
| La1.7.1 | 1 |
| lineage2.2.1;lineage4.3.3 | 1 |
| 3 | |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 3 |
| La1.7;M.canetti;lineage4.9 | 1 |
| lineage2.2.2 | 2 |
| M.canetti;lineage2.1;lineage4 | 1 |
| La3;M.canetti;lineage2.1;lineage3.1 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.6.4 | 2 |
| lineage4.1;lineage4.8 | 2 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage4.3.2 | 2 |
| M.canetti;lineage2.1;lineage4.1.2.1 | 1 |
| La2;lineage4.9 | 1 |
| lineage4.1.2.1.1 | 1 |
| lineage4.3.3 | 2 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage2.2.1.1 | 4 |
| lineage2.1;lineage4.3.2 | 1 |
| La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 2 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| lineage4.4.1.1 | 2 |
| lineage4.8 | 1 |
| lineage4.9.1 | 1 |
| lineage3 | 3 |
| lineage4.6.3;lineage4.9 | 1 |
| La1.8.1 | 2 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| lineage3.1.2.1;lineage3.1.2.2 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage4.8;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | 1 |
| M.canetti;lineage2.1 | 1 |
| lineage1.1 | 1 |
| La3;M.canetti;lineage3.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 199 |
Geographic prevalence
Country level data for this variant is available for 20 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3675464 | MDR-TB | lineage2.1;lineage4.9;lineage6.3;lineage8 | None | ERR2026697 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR2199988 | MDR-TB | lineage4.1.1.3 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR3675554 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR8976043 | MDR-TB | lineage2.1;lineage2.2;lineage6.3 | None | SRR1167055 | Other | lineage4.1.2.1 | None | ERR294248 | MDR-TB | lineage2.1;lineage4.9 | None | ERR9787014 | RR-TB | lineage6.1.1 | None | SRR1183049 | RR-TB | lineage2.2 | None | ERR5311081 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | ERR1213899 | Other | lineage4.1.1.3 | pe | ERR1035317 | RR-TB | lineage4.3.4.2 | br | ERR1035296 | HR-TB | lineage4.9 | br | ERR2124083 | HR-TB | lineage4.6.1.2 | None | ERR550637 | MDR-TB | lineage4.1.1.3 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR3675482 | RR-TB | lineage4.9 | None | ERR1035295 | MDR-TB | lineage4.1.2.1 | br | ERR3797061 | Other | La1.6;La3;lineage4.9 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR6325448 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR1180226 | HR-TB | lineage4.9 | None | ERR3283024 | HR-TB | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | SRR6046644 | MDR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | ERR1873396 | Pre-XDR-TB | M.canetti;lineage2.2 | None | ERR3797016 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR1035297 | MDR-TB | lineage4.3.4.1 | br | ERR867545 | Other | lineage4.9 | None | ERR323047 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | SRR7898221 | MDR-TB | lineage1.1.2 | None | SAMEA2533358 | MDR-TB | lineage4.1.1.3 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR1035293 | MDR-TB | lineage4.3.4.2 | br | ERR1873393 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | ERR3797043 | Sensitive | lineage4.9 | None | SRR6325447 | MDR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | ERR323036 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR502524 | MDR-TB | lineage4.9;lineage6.3 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | ERR736865 | MDR-TB | lineage4.3.2;lineage4.9 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR867544 | Other | lineage4.9 | None | ERR3468544 | RR-TB | lineage2.1;lineage4.9 | None | SRR13423544 | Other | lineage4.5 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR1035294 | MDR-TB | lineage4.1.2.1 | br | SRR14066533 | RR-TB | lineage1.1.1 | None | SRR13861322 | Other | lineage4.9 | None | ERR323055 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR4828872 | RR-TB | lineage4.2;lineage4.9 | None | ERR9786711 | Other | lineage4.6.2.2 | None | SAMN02414850 | Other | lineage4.1.2.1 | None | ERR294266 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR6358991 | HR-TB | lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | None | SRR1510066 | RR-TB | lineage1.2.1.2.1 | None | SRR3675515 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR1035315 | Pre-XDR-TB | lineage4.3.4.1 | br | SRR1180172 | RR-TB | lineage2.2.1 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR7240492 | MDR-TB | La1.7.1 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR323038 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR1213939 | MDR-TB | lineage2.2.1;lineage4.3.3 | pe | ERR9786843 | Other | None | ERR987722 | MDR-TB | None | ERR323040 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR4188342 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR278594 | MDR-TB | lineage2.1;lineage4.9 | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | SRR069978 | HR-TB | lineage2.2.2 | None | SRR1165506 | Other | lineage4.1.2.1 | None | ERR2693239 | RR-TB | M.canetti;lineage2.1;lineage4 | None | ERR323034 | MDR-TB | La3;M.canetti;lineage2.1;lineage3.1 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR124651 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | ERR124642 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | ERR2693228 | RR-TB | lineage4.9 | None | SRR6044942 | HR-TB | lineage4.9 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | ERR2026698 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR1213873 | MDR-TB | lineage4.3.4.2.1 | rw | ERR4872102 | MDR-TB | lineage4.6.4 | None | SRR13861381 | HR-TB | lineage4.9 | None | ERR323060 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | ERR9786526 | Other | lineage4.1;lineage4.8 | None | ERR3283016 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | ERR176658 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR2693254 | Other | La1.6;La3;lineage4.9 | None | ERR386953 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR5311078 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR6045219 | HR-TB | lineage4.9 | None | SRR3675486 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | SRR1181328 | Other | lineage2.2.1 | None | ERR323058 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR6325442 | MDR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | ERR1213930 | Other | lineage4.3.2 | pe | ERR1023295 | MDR-TB | M.canetti;lineage2.1;lineage4.1.2.1 | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR126600 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR126618 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR323039 | MDR-TB | La2;lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | ERR3801503 | Other | lineage4.6.2.2 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR8665994 | RR-TB | lineage4.9 | None | ERR3283042 | HR-TB | lineage4.9 | None | ERR1035312 | Pre-XDR-TB | lineage4.3.3 | br | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR1180147 | RR-TB | lineage2.2.1.1 | None | ERR772255 | MDR-TB | lineage2.1;lineage4.3.2 | None | SRR3675450 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR1180137 | RR-TB | lineage2.2.1 | None | SRR1165423 | RR-TB | lineage4.1.2.1 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR5311102 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1184024 | RR-TB | lineage2.2.1.1 | None | SRR3675508 | MDR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR3283018 | HR-TB | lineage4.9 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | ERR1035299 | MDR-TB | lineage4.1.2.1 | br | ERR1035300 | HR-TB | lineage4.1.2.1 | br | ERR11252664 | Other | lineage2.2.1 | None | SRR1640750 | RR-TB | None | ERR2693229 | RR-TB | La3;M.canetti;lineage4.9 | None | SRR6325445 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR176766 | MDR-TB | lineage2.1;lineage4.9 | None | ERR1035239 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | ERR1035316 | MDR-TB | lineage4.3.2 | br | ERR9119508 | MDR-TB | lineage4.6.4 | None | SRR3675507 | RR-TB | lineage4.9 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | ERR1213874 | MDR-TB | lineage2.2.1 | kr | SRR1173453 | Other | lineage4.4.1.1 | None | ERR1034907 | Pre-XDR-TB | lineage4.3.4.1 | pt | ERR9786619 | Sensitive | lineage4.8 | None | ERR245758 | Other | lineage4.9.1 | None | ERR124652 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR5311101 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR9896144 | Other | lineage3 | None | ERR323063 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR1163221 | MDR-TB | lineage4.1.2.1 | None | SRR26159047 | RR-TB | lineage4.6.3;lineage4.9 | None | SRR1172310 | MDR-TB | lineage4.9 | None | SRR1791696 | RR-TB | La1.8.1 | None | ERR2693231 | HR-TB | La1.6;La3;lineage4.6.4;lineage4.9 | None | ERR990545 | RR-TB | lineage3 | None | ERR987729 | MDR-TB | lineage3.1.2.1;lineage3.1.2.2 | None | ERR1034902 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR3797023 | MDR-TB | La1.8.1 | None | SRR17832802 | HR-TB | lineage3 | None | ERR3797014 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR3799304 | RR-TB | lineage6.1.1 | None | ERR323064 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR6046397 | RR-TB | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR038268 | MDR-TB | La3;M.canetti;lineage4.8;lineage4.9 | None | ERR161033 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | ERR5311096 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR1166821 | RR-TB | lineage4.1.2.1 | None | ERR5311082 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | ERR5917710 | RR-TB | lineage4.1.2.1 | None | SRR3675571 | MDR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR1213875 | Sensitive | lineage4.3.3 | de | ERR9786525 | RR-TB | lineage4.1;lineage4.8 | None | ERR2229143 | RR-TB | lineage4.9 | None | SRR069981 | HR-TB | lineage2.2.2 | None | ERR6358837 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR176751 | HR-TB | lineage4.9 | None | SRR1181289 | RR-TB | lineage2.2.1 | None | SRR3675518 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR1173767 | MDR-TB | lineage4.4.1.1 | None | SRR1181091 | Other | lineage2.2.1.1 | None | ERR2693257 | HR-TB | La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | None | SRR1162864 | MDR-TB | lineage4.1.2.1 | None | ERR323041 | MDR-TB | M.canetti;lineage2.1 | None | ERR3468607 | RR-TB | lineage4.9 | None | ERR126608 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR323033 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR3077978 | RR-TB | lineage1.1 | None | ERR3275196 | RR-TB | lineage2.2.1 | nl | SRR1183144 | RR-TB | lineage2.2.1 | None | ERR473314 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR323054 | MDR-TB | La3;M.canetti;lineage3.1 | None |
|---|
