TB-Profiler result

Run: ERR9786986
Summary

Run ID: ERR9786986

Sample name:

Date: 02-04-2023 12:54:53

Number of reads: 895210

Percentage reads mapped: 77.16

Strain: lineage4.1.2.1

Drug-resistance: HR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 0.96
lineage4.1 Euro-American T;X;H None 0.94
lineage4.1.2 Euro-American T;H None 0.99
lineage4.1.2.1 Euro-American (Haarlem) T1;H1 RD182 0.98
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
katG 2155168 p.Ser315Thr missense_variant 1.0 isoniazid
folC 2747141 p.Glu153Ala missense_variant 0.98 para-aminosalicylic_acid
gid 4408100 c.102delG frameshift_variant 1.0 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6190 c.951A>G synonymous_variant 0.19
gyrB 6214 c.975G>C synonymous_variant 0.21
gyrB 6238 c.999G>A synonymous_variant 0.19
gyrB 6242 p.Arg335Lys missense_variant 0.19
gyrB 6250 c.1011A>G synonymous_variant 0.17
gyrB 6280 c.1041T>C synonymous_variant 0.17
gyrB 6292 c.1053G>T synonymous_variant 0.16
gyrB 6299 c.1060C>T synonymous_variant 0.16
gyrA 6403 c.-899T>C upstream_gene_variant 0.18
gyrA 6559 c.-743C>A upstream_gene_variant 0.15
gyrA 6571 c.-731T>C upstream_gene_variant 0.18
gyrA 6577 c.-725T>C upstream_gene_variant 0.18
gyrA 6778 c.-524C>T upstream_gene_variant 0.17
gyrA 6793 c.-509T>C upstream_gene_variant 0.19
gyrB 6797 p.Gly520Thr missense_variant 0.19
gyrA 6841 c.-461T>C upstream_gene_variant 0.2
gyrA 6844 c.-458T>G upstream_gene_variant 0.2
gyrA 6973 c.-329G>C upstream_gene_variant 0.18
gyrA 6976 c.-326A>G upstream_gene_variant 0.19
gyrA 6982 c.-320A>C upstream_gene_variant 0.18
gyrA 6988 c.-314C>G upstream_gene_variant 0.2
gyrA 6997 c.-305G>A upstream_gene_variant 0.21
gyrA 7006 c.-296T>C upstream_gene_variant 0.21
gyrA 7012 c.-290G>C upstream_gene_variant 0.22
gyrA 7018 c.-284G>C upstream_gene_variant 0.22
gyrA 7021 c.-281G>T upstream_gene_variant 0.18
gyrA 7024 c.-278G>C upstream_gene_variant 0.19
gyrA 7156 c.-146C>T upstream_gene_variant 0.16
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7433 c.132G>C synonymous_variant 0.19
gyrA 7442 c.141G>C synonymous_variant 0.23
gyrA 7451 c.150C>G synonymous_variant 0.23
gyrA 7457 c.156T>C synonymous_variant 0.22
gyrA 7463 c.162G>C synonymous_variant 0.21
gyrA 7469 c.168C>G synonymous_variant 0.2
gyrA 7475 c.174A>G synonymous_variant 0.21
gyrA 7480 p.Phe60Tyr missense_variant 0.21
gyrA 7484 c.183T>C synonymous_variant 0.21
gyrA 7487 c.186C>G synonymous_variant 0.21
gyrA 7490 c.189C>T synonymous_variant 0.21
gyrA 7496 c.195C>A synonymous_variant 0.21
gyrA 7520 c.219G>C synonymous_variant 0.19
gyrA 7523 c.222C>G synonymous_variant 0.19
gyrA 7532 c.231T>C synonymous_variant 0.19
gyrA 7559 c.258G>C synonymous_variant 0.21
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 8337 c.1036C>T synonymous_variant 0.16
gyrA 8340 p.Ala347Ser missense_variant 0.16
gyrA 8382 p.Leu361Met missense_variant 0.17
gyrA 8453 c.1152A>C synonymous_variant 0.17
gyrA 8459 c.1158G>A synonymous_variant 0.18
gyrA 8510 c.1209G>A synonymous_variant 0.18
gyrA 8537 c.1236G>A synonymous_variant 0.17
gyrA 8588 c.1287G>A synonymous_variant 0.21
gyrA 8591 c.1290C>T synonymous_variant 0.23
gyrA 8603 c.1302A>C synonymous_variant 0.21
gyrA 8619 c.1318T>C synonymous_variant 0.2
gyrA 8633 c.1332C>G synonymous_variant 0.23
gyrA 8636 c.1335A>C synonymous_variant 0.23
gyrA 8642 c.1341A>G synonymous_variant 0.23
gyrA 8645 c.1344C>G synonymous_variant 0.23
gyrA 8672 c.1371A>G synonymous_variant 0.24
gyrA 8678 c.1377G>A synonymous_variant 0.25
gyrA 8693 c.1392T>C synonymous_variant 0.24
gyrA 8696 c.1395G>C synonymous_variant 0.23
gyrA 8711 c.1410A>C synonymous_variant 0.24
gyrA 8714 c.1413A>G synonymous_variant 0.24
gyrA 8717 c.1416C>G synonymous_variant 0.24
gyrA 8720 c.1419G>A synonymous_variant 0.22
gyrA 8729 c.1428T>C synonymous_variant 0.22
gyrA 8732 c.1431G>C synonymous_variant 0.21
gyrA 8747 c.1446A>G synonymous_variant 0.22
gyrA 8751 p.Ala484Thr missense_variant 0.22
gyrA 8756 c.1455A>G synonymous_variant 0.2
gyrA 8767 p.Arg489Lys missense_variant 0.19
gyrA 8790 c.1489C>A synonymous_variant 0.17
gyrA 8796 p.Ile499Val missense_variant 0.18
gyrA 8810 c.1509A>T synonymous_variant 0.17
gyrA 8873 c.1572A>C synonymous_variant 0.2
gyrA 8882 c.1581G>A synonymous_variant 0.21
gyrA 8894 c.1593C>G synonymous_variant 0.26
gyrA 8900 c.1599G>C synonymous_variant 0.29
gyrA 8903 c.1602T>C synonymous_variant 0.29
gyrA 8939 c.1638T>C synonymous_variant 0.29
gyrA 8942 c.1641G>C synonymous_variant 0.29
gyrA 8945 c.1644G>C synonymous_variant 0.28
gyrA 8946 c.1645_1647delTTGinsCTC synonymous_variant 0.29
gyrA 8967 p.Ala556Arg missense_variant 0.23
gyrA 8981 c.1680G>C synonymous_variant 0.24
gyrA 8982 p.Cys561Ser missense_variant 0.24
gyrA 8990 c.1689C>G synonymous_variant 0.23
gyrA 8996 c.1695T>C synonymous_variant 0.23
gyrA 8998 p.Leu566Trp missense_variant 0.24
gyrA 9002 c.1701C>T synonymous_variant 0.24
gyrA 9017 c.1716C>G synonymous_variant 0.21
gyrA 9023 c.1722A>C synonymous_variant 0.21
gyrA 9029 c.1728T>G synonymous_variant 0.23
gyrA 9032 c.1731T>C synonymous_variant 0.23
gyrA 9038 c.1737C>G synonymous_variant 0.23
gyrA 9050 p.Asp583Glu missense_variant 0.24
gyrA 9051 c.1750T>C synonymous_variant 0.24
gyrA 9062 c.1761C>G synonymous_variant 0.24
gyrA 9066 c.1765C>A synonymous_variant 0.24
gyrA 9071 c.1770G>C synonymous_variant 0.22
gyrA 9074 c.1773G>C synonymous_variant 0.22
gyrA 9080 c.1779G>T synonymous_variant 0.21
gyrA 9083 c.1782G>A synonymous_variant 0.2
gyrA 9089 c.1788G>C synonymous_variant 0.2
gyrA 9095 c.1794C>T synonymous_variant 0.2
gyrA 9099 c.1798_1800delTTAinsCTG synonymous_variant 0.2
gyrA 9134 c.1833C>G synonymous_variant 0.18
gyrA 9143 c.1842T>C synonymous_variant 0.19
gyrA 9153 p.Thr618Asp missense_variant 0.18
gyrA 9161 c.1860C>G synonymous_variant 0.18
gyrA 9182 c.1881T>C synonymous_variant 0.19
gyrA 9191 c.1890G>C synonymous_variant 0.21
gyrA 9200 c.1899A>G synonymous_variant 0.21
gyrA 9204 p.Ser635Thr missense_variant 0.18
gyrA 9218 c.1917C>T synonymous_variant 0.16
gyrA 9230 c.1929T>C synonymous_variant 0.17
gyrA 9233 c.1932C>A synonymous_variant 0.21
gyrA 9242 c.1941A>C synonymous_variant 0.2
gyrA 9248 c.1947G>C synonymous_variant 0.21
gyrA 9252 p.Val651Ile missense_variant 0.21
gyrA 9304 p.Gly668Asp missense_variant 1.0
gyrA 9527 c.2226A>G synonymous_variant 0.17
gyrA 9542 c.2241T>C synonymous_variant 0.19
gyrA 9545 c.2244A>G synonymous_variant 0.19
gyrA 9548 c.2247T>C synonymous_variant 0.18
gyrA 9554 c.2253G>C synonymous_variant 0.18
gyrA 9557 c.2256G>C synonymous_variant 0.18
gyrA 9565 p.Tyr755Phe missense_variant 0.16
gyrA 9583 p.Arg761Lys missense_variant 0.17
gyrA 9593 c.2292G>C synonymous_variant 0.18
gyrA 9602 c.2301T>C synonymous_variant 0.2
gyrA 9626 c.2325T>C synonymous_variant 0.2
gyrA 9630 p.Val777Ile missense_variant 0.21
gyrA 9635 c.2334T>C synonymous_variant 0.21
gyrA 9641 c.2340C>G synonymous_variant 0.23
gyrA 9644 c.2343T>C synonymous_variant 0.23
gyrA 9661 p.Ala787Asp missense_variant 0.21
gyrA 9665 c.2364A>G synonymous_variant 0.21
gyrA 9674 c.2373T>C synonymous_variant 0.2
fgd1 491022 c.240C>G synonymous_variant 0.19
fgd1 491340 c.558C>G synonymous_variant 0.21
fgd1 491343 c.561C>G synonymous_variant 0.21
fgd1 491349 c.567T>C synonymous_variant 0.2
fgd1 491364 c.582T>C synonymous_variant 0.17
fgd1 491379 c.597C>T synonymous_variant 0.16
fgd1 491496 c.714C>T synonymous_variant 0.19
fgd1 491591 p.Lys270Met missense_variant 0.93
mshA 575561 p.Met72Val missense_variant 0.19
mshA 575571 p.Ser75Thr missense_variant 0.21
mshA 575576 c.229C>T synonymous_variant 0.23
mshA 575587 c.240C>G synonymous_variant 0.26
mshA 575590 c.243T>G synonymous_variant 0.25
mshA 575629 c.282A>G synonymous_variant 0.28
mshA 575632 c.285G>C synonymous_variant 0.28
mshA 575635 c.288A>C synonymous_variant 0.28
mshA 575638 c.291T>C synonymous_variant 0.29
mshA 575641 c.294A>G synonymous_variant 0.29
mshA 575649 p.Val101Ala missense_variant 0.31
mshA 575659 c.312A>G synonymous_variant 0.36
mshA 575665 c.318G>C synonymous_variant 0.39
mshA 575679 p.Asn111Ser missense_variant 0.61
mshA 575695 c.348C>G synonymous_variant 0.37
mshA 575704 c.357T>C synonymous_variant 0.35
mshA 575705 c.358T>C synonymous_variant 0.35
mshA 575713 c.366G>A synonymous_variant 0.36
mshA 575728 c.381C>T synonymous_variant 0.28
mshA 575734 c.387T>G synonymous_variant 0.25
mshA 575737 c.390T>C synonymous_variant 0.26
mshA 575764 c.417C>G synonymous_variant 0.27
mshA 575771 p.Val142Ser missense_variant 0.24
mshA 575785 c.438T>C synonymous_variant 0.21
mshA 575786 p.Tyr147His missense_variant 0.21
mshA 575864 c.517T>C synonymous_variant 0.23
mshA 575878 c.531A>G synonymous_variant 0.24
mshA 575893 c.546C>G synonymous_variant 0.21
mshA 575896 c.549G>C synonymous_variant 0.2
mshA 575902 c.555C>T synonymous_variant 0.2
mshA 575908 c.561A>G synonymous_variant 0.19
mshA 575914 c.567C>G synonymous_variant 0.19
mshA 575916 p.Asp190Ala missense_variant 0.2
mshA 575925 p.Gly193Ala missense_variant 0.19
mshA 575944 c.597T>C synonymous_variant 0.23
mshA 575953 c.606G>C synonymous_variant 0.21
mshA 575959 c.612G>A synonymous_variant 0.2
mshA 575980 c.633T>C synonymous_variant 0.18
mshA 575984 c.637T>C synonymous_variant 0.18
rpoB 760115 c.309C>T synonymous_variant 0.93
rpoB 760223 c.417T>C synonymous_variant 0.17
rpoB 760235 c.429T>C synonymous_variant 0.17
rpoB 760475 c.669A>G synonymous_variant 0.25
rpoB 760481 c.675G>C synonymous_variant 0.24
rpoB 760484 c.678A>G synonymous_variant 0.24
rpoB 760522 p.Ser239Asn missense_variant 0.3
rpoB 760532 c.726T>C synonymous_variant 0.3
rpoB 760533 p.Val243His missense_variant 0.31
rpoB 760547 c.741G>C synonymous_variant 0.3
rpoB 760561 c.757_758delCG frameshift_variant 0.28
rpoB 760567 p.Ser254Trp missense_variant 0.28
rpoB 760568 c.762_763insGC frameshift_variant 0.28
rpoB 760591 p.Val262Ala missense_variant 0.29
rpoB 760611 c.805T>C synonymous_variant 0.29
rpoB 760634 c.828T>C synonymous_variant 0.27
rpoB 760646 c.840C>G synonymous_variant 0.27
rpoB 760655 c.849A>G synonymous_variant 0.25
rpoB 760661 c.855A>C synonymous_variant 0.26
rpoB 760670 c.864G>C synonymous_variant 0.24
rpoB 760674 c.868T>C synonymous_variant 0.23
rpoB 760679 c.873A>G synonymous_variant 0.24
rpoB 760683 c.877T>C synonymous_variant 0.22
rpoB 760724 c.918T>C synonymous_variant 0.18
rpoB 760730 c.924T>C synonymous_variant 0.18
rpoB 760748 c.942C>G synonymous_variant 0.21
rpoB 760751 c.945G>C synonymous_variant 0.2
rpoB 760757 c.951T>C synonymous_variant 0.19
rpoB 760759 p.Val318Ala missense_variant 0.19
rpoB 760769 c.963C>G synonymous_variant 0.19
rpoB 760781 c.975G>C synonymous_variant 0.18
rpoB 760805 c.999G>C synonymous_variant 0.17
rpoB 760991 c.1185G>C synonymous_variant 0.22
rpoB 761015 c.1209G>C synonymous_variant 0.27
rpoB 761027 c.1221A>G synonymous_variant 0.29
rpoB 761036 c.1230G>C synonymous_variant 0.29
rpoB 761037 c.1231T>C synonymous_variant 0.29
rpoB 761060 c.1254C>G synonymous_variant 0.35
rpoB 761096 c.1290G>C synonymous_variant 0.33
rpoB 761097 c.1291_1292delAGinsTC synonymous_variant 0.33
rpoB 761102 c.1296A>G synonymous_variant 0.31
rpoB 761132 c.1326G>T synonymous_variant 0.31
rpoB 761133 c.1327T>C synonymous_variant 0.3
rpoB 761150 c.1344A>C synonymous_variant 0.28
rpoB 761165 c.1359G>C synonymous_variant 0.24
rpoB 761168 c.1362C>G synonymous_variant 0.24
rpoB 761180 c.1374A>C synonymous_variant 0.22
rpoB 761189 c.1383T>G synonymous_variant 0.24
rpoB 761195 c.1389G>C synonymous_variant 0.23
rpoB 761198 c.1392G>C synonymous_variant 0.24
rpoB 761204 c.1398C>G synonymous_variant 0.22
rpoB 761327 c.1521A>G synonymous_variant 0.2
rpoB 761345 c.1539G>C synonymous_variant 0.24
rpoB 761354 c.1548C>T synonymous_variant 0.24
rpoB 761360 c.1554T>C synonymous_variant 0.24
rpoB 761362 p.Ser519Thr missense_variant 0.23
rpoB 761373 p.Val523His missense_variant 0.24
rpoB 761408 c.1602G>C synonymous_variant 0.26
rpoB 761414 c.1608A>G synonymous_variant 0.26
rpoB 761423 c.1617T>C synonymous_variant 0.28
rpoB 761435 c.1629T>C synonymous_variant 0.23
rpoB 761439 p.Asp545Ser missense_variant 0.23
rpoB 761444 c.1638T>C synonymous_variant 0.23
rpoB 761447 c.1641C>G synonymous_variant 0.23
rpoB 761452 p.Val549Glu missense_variant 0.23
rpoB 761457 p.Pro551Ser missense_variant 0.23
rpoB 761477 c.1671C>G synonymous_variant 0.22
rpoB 761483 c.1677G>C synonymous_variant 0.24
rpoB 761492 c.1686G>C synonymous_variant 0.27
rpoB 761504 c.1698C>G synonymous_variant 0.26
rpoB 761510 c.1704T>C synonymous_variant 0.25
rpoB 761531 c.1725C>G synonymous_variant 0.2
rpoB 761537 c.1731C>G synonymous_variant 0.21
rpoB 761564 c.1758G>C synonymous_variant 0.27
rpoB 761570 c.1764T>C synonymous_variant 0.27
rpoB 761573 c.1767C>G synonymous_variant 0.24
rpoB 761579 c.1773G>C synonymous_variant 0.26
rpoB 761606 c.1800C>G synonymous_variant 0.24
rpoB 761612 c.1806G>C synonymous_variant 0.21
rpoB 761615 c.1809A>C synonymous_variant 0.21
rpoB 761636 c.1830G>C synonymous_variant 0.24
rpoB 761645 c.1839C>G synonymous_variant 0.24
rpoB 761648 c.1842T>C synonymous_variant 0.24
rpoB 761657 c.1851C>G synonymous_variant 0.24
rpoB 761675 c.1869G>C synonymous_variant 0.22
rpoB 761682 c.1876C>T synonymous_variant 0.21
rpoB 761690 c.1884G>C synonymous_variant 0.23
rpoB 761705 c.1899C>T synonymous_variant 0.24
rpoB 761720 c.1914C>G synonymous_variant 0.2
rpoB 761732 c.1926C>G synonymous_variant 0.2
rpoB 761735 c.1929C>G synonymous_variant 0.2
rpoB 761747 c.1941G>C synonymous_variant 0.19
rpoB 761765 c.1959T>C synonymous_variant 0.22
rpoB 761772 p.His656Ala missense_variant 0.21
rpoB 761778 p.Asn658Asp missense_variant 0.23
rpoB 761791 p.Arg662His missense_variant 0.21
rpoB 761815 p.Ala670Asp missense_variant 0.17
rpoB 761819 c.2013G>C synonymous_variant 0.19
rpoB 761834 c.2028T>G synonymous_variant 0.2
rpoB 761848 p.Cys681Ser missense_variant 0.2
rpoB 761852 c.2046C>G synonymous_variant 0.2
rpoB 761873 c.2067A>G synonymous_variant 0.21
rpoB 761885 c.2079T>C synonymous_variant 0.21
rpoB 761891 c.2085G>C synonymous_variant 0.21
rpoB 761906 c.2100C>G synonymous_variant 0.19
rpoB 761909 c.2103T>C synonymous_variant 0.19
rpoB 761916 p.Asp704Asn missense_variant 0.18
rpoB 761948 c.2142G>C synonymous_variant 0.26
rpoB 761954 c.2148C>G synonymous_variant 0.27
rpoB 761999 c.2193G>C synonymous_variant 0.29
rpoB 762053 c.2247T>C synonymous_variant 0.34
rpoB 762065 c.2259T>C synonymous_variant 0.33
rpoB 762083 c.2277T>C synonymous_variant 0.31
rpoB 762086 c.2280G>C synonymous_variant 0.31
rpoB 762101 c.2295C>G synonymous_variant 0.3
rpoB 762114 p.Ile770Val missense_variant 0.31
rpoB 762122 c.2316C>T synonymous_variant 0.34
rpoB 762131 c.2325C>G synonymous_variant 0.3
rpoB 762140 c.2334G>C synonymous_variant 0.31
rpoB 762143 c.2337T>C synonymous_variant 0.29
rpoB 762149 c.2343G>C synonymous_variant 0.32
rpoB 762158 c.2352G>C synonymous_variant 0.3
rpoB 762167 c.2361T>C synonymous_variant 0.27
rpoB 762176 c.2370T>C synonymous_variant 0.28
rpoB 762185 c.2379G>C synonymous_variant 0.28
rpoB 762233 c.2427G>C synonymous_variant 0.33
rpoB 762248 c.2442G>C synonymous_variant 0.3
rpoB 762254 c.2448T>G synonymous_variant 0.32
rpoB 762257 c.2451C>G synonymous_variant 0.33
rpoB 762266 c.2460T>C synonymous_variant 0.35
rpoB 762293 c.2487T>C synonymous_variant 0.38
rpoB 762317 c.2511A>G synonymous_variant 0.35
rpoB 762329 c.2523G>C synonymous_variant 0.33
rpoB 762338 c.2532T>C synonymous_variant 0.31
rpoB 762347 c.2541T>C synonymous_variant 0.3
rpoB 762362 p.Glu852Asp missense_variant 0.29
rpoB 762369 c.2563T>C synonymous_variant 0.29
rpoC 762389 c.-981G>A upstream_gene_variant 0.24
rpoC 762395 c.-975G>C upstream_gene_variant 0.2
rpoC 762398 c.-972T>C upstream_gene_variant 0.2
rpoC 762401 c.-969G>C upstream_gene_variant 0.19
rpoC 762404 c.-966T>C upstream_gene_variant 0.19
rpoC 762410 c.-960T>C upstream_gene_variant 0.21
rpoC 762416 c.-954A>G upstream_gene_variant 0.21
rpoC 762434 c.-936T>C upstream_gene_variant 0.23
rpoC 762446 c.-924C>G upstream_gene_variant 0.23
rpoC 762929 c.-441G>C upstream_gene_variant 0.25
rpoC 762962 c.-408C>T upstream_gene_variant 0.27
rpoC 762995 c.-375G>C upstream_gene_variant 0.35
rpoC 763028 c.-342T>C upstream_gene_variant 0.3
rpoC 763031 c.-339T>C upstream_gene_variant 0.29
rpoC 763034 c.-336C>G upstream_gene_variant 0.28
rpoC 763040 c.-330C>G upstream_gene_variant 0.32
rpoC 763070 c.-300T>C upstream_gene_variant 0.37
rpoC 763076 c.-294C>G upstream_gene_variant 0.35
rpoC 763085 c.-285C>G upstream_gene_variant 0.33
rpoC 763115 c.-255T>C upstream_gene_variant 0.38
rpoC 763127 c.-243G>C upstream_gene_variant 0.32
rpoC 763142 c.-228C>G upstream_gene_variant 0.28
rpoC 763166 c.-204A>G upstream_gene_variant 0.29
rpoC 763169 c.-201A>G upstream_gene_variant 0.28
rpoC 763187 c.-183C>G upstream_gene_variant 0.26
rpoC 763202 c.-168A>C upstream_gene_variant 0.19
rpoB 763206 p.Ser1134Cys missense_variant 0.16
rpoC 763227 c.-143C>T upstream_gene_variant 0.19
rpoC 763238 c.-132T>C upstream_gene_variant 0.22
rpoC 763253 c.-117G>C upstream_gene_variant 0.2
rpoC 763262 c.-108C>A upstream_gene_variant 0.17
rpoC 763272 c.-98C>T upstream_gene_variant 0.18
rpoC 763283 c.-87T>C upstream_gene_variant 0.17
rpoC 763310 c.-60C>T upstream_gene_variant 0.17
rpoC 763316 c.-54T>C upstream_gene_variant 0.17
rpoC 763319 c.-51T>G upstream_gene_variant 0.17
rpoC 763322 c.-48G>T upstream_gene_variant 0.15
rpoC 763351 c.-19T>C upstream_gene_variant 0.2
rpoC 763352 c.-18T>A upstream_gene_variant 0.2
rpoC 763402 c.33C>T synonymous_variant 0.28
rpoC 763408 c.39T>C synonymous_variant 0.28
rpoC 763411 c.42T>G synonymous_variant 0.28
rpoC 763414 c.45T>C synonymous_variant 0.28
rpoC 763441 c.72C>T synonymous_variant 0.32
rpoC 763444 c.75T>C synonymous_variant 0.32
rpoC 763456 c.87A>G synonymous_variant 0.32
rpoC 763486 c.117T>G synonymous_variant 0.31
rpoC 763528 c.159G>A synonymous_variant 0.31
rpoC 763546 c.177A>G synonymous_variant 0.34
rpoC 763570 c.201G>C synonymous_variant 0.34
rpoC 763573 c.204G>C synonymous_variant 0.35
rpoC 763633 c.264T>C synonymous_variant 0.33
rpoC 763636 c.267T>C synonymous_variant 0.33
rpoC 763660 c.291T>G synonymous_variant 0.3
rpoC 763669 c.300C>G synonymous_variant 0.31
rpoC 763675 c.306C>G synonymous_variant 0.33
rpoC 763708 c.339G>C synonymous_variant 0.35
rpoC 763717 c.348T>C synonymous_variant 0.4
rpoC 763723 c.354G>C synonymous_variant 0.35
rpoC 763729 c.360G>C synonymous_variant 0.34
rpoC 763741 c.372C>T synonymous_variant 0.32
rpoC 763744 c.375G>C synonymous_variant 0.33
rpoC 763765 c.396T>G synonymous_variant 0.37
rpoC 763768 c.399C>G synonymous_variant 0.36
rpoC 763780 c.411C>G synonymous_variant 0.36
rpoC 763792 p.Glu141Asp missense_variant 0.38
rpoC 763801 c.432C>G synonymous_variant 0.35
rpoC 763807 c.438T>C synonymous_variant 0.34
rpoC 763813 c.444C>G synonymous_variant 0.34
rpoC 763835 p.Ala156Met missense_variant 0.33
rpoC 763855 c.486C>T synonymous_variant 0.37
rpoC 763858 c.489A>G synonymous_variant 0.37
rpoC 763872 p.Gly168Ala missense_variant 0.42
rpoC 763876 p.Glu169Asp missense_variant 0.39
rpoC 763879 c.510A>G synonymous_variant 0.4
rpoC 763888 c.519G>C synonymous_variant 0.39
rpoC 763894 c.525A>G synonymous_variant 0.4
rpoC 763945 c.576T>C synonymous_variant 0.38
rpoC 763951 c.582G>C synonymous_variant 0.38
rpoC 763960 c.591T>C synonymous_variant 0.35
rpoC 763978 c.609C>G synonymous_variant 0.35
rpoC 763991 p.Ile208Leu missense_variant 0.37
rpoC 763996 c.627T>C synonymous_variant 0.37
rpoC 764005 c.636G>C synonymous_variant 0.34
rpoC 764011 c.642T>C synonymous_variant 0.35
rpoC 764024 c.655_657delTTGinsCTC synonymous_variant 0.3
rpoC 764044 c.675T>C synonymous_variant 0.35
rpoC 764059 c.690G>C synonymous_variant 0.38
rpoC 764083 c.714A>G synonymous_variant 0.38
rpoC 764098 c.729A>G synonymous_variant 0.34
rpoC 764101 c.732C>G synonymous_variant 0.34
rpoC 764131 c.762T>C synonymous_variant 0.3
rpoC 764161 c.792G>C synonymous_variant 0.3
rpoC 764188 c.819A>G synonymous_variant 0.36
rpoC 764194 p.Glu275Asp missense_variant 0.36
rpoC 764203 c.834G>C synonymous_variant 0.37
rpoC 764206 c.837T>C synonymous_variant 0.36
rpoC 764215 c.846A>G synonymous_variant 0.36
rpoC 764245 c.876C>A synonymous_variant 0.39
rpoC 764266 c.897T>C synonymous_variant 0.39
rpoC 764269 c.900G>C synonymous_variant 0.39
rpoC 764272 c.903G>C synonymous_variant 0.38
rpoC 764278 c.909A>G synonymous_variant 0.38
rpoC 764344 c.975C>G synonymous_variant 0.33
rpoC 764365 c.996C>T synonymous_variant 0.31
rpoC 764380 c.1011G>C synonymous_variant 0.29
rpoC 764381 c.1012_1013delTCinsAG synonymous_variant 0.28
rpoC 764387 c.1018_1020delTTGinsCTC synonymous_variant 0.25
rpoC 764405 c.1036A>C synonymous_variant 0.31
rpoC 764410 c.1041G>C synonymous_variant 0.33
rpoC 764431 c.1062G>C synonymous_variant 0.29
rpoC 764434 c.1065A>G synonymous_variant 0.29
rpoC 764446 c.1077T>C synonymous_variant 0.29
rpoC 764449 c.1080G>C synonymous_variant 0.29
rpoC 764452 c.1083T>C synonymous_variant 0.29
rpoC 764458 c.1089G>C synonymous_variant 0.31
rpoC 764461 c.1092A>G synonymous_variant 0.32
rpoC 764497 c.1128A>G synonymous_variant 0.32
rpoC 764503 c.1134G>C synonymous_variant 0.31
rpoC 764521 c.1152T>C synonymous_variant 0.29
rpoC 764536 c.1167G>C synonymous_variant 0.24
rpoC 764539 c.1170C>G synonymous_variant 0.24
rpoC 764575 c.1206T>G synonymous_variant 0.28
rpoC 764578 c.1209C>G synonymous_variant 0.28
rpoC 764585 c.1216_1218delCTCinsTTG synonymous_variant 0.26
rpoC 764611 c.1242G>C synonymous_variant 0.27
rpoC 764626 c.1257C>T synonymous_variant 0.26
rpoC 764632 c.1263T>C synonymous_variant 0.27
rpoC 764644 c.1275G>C synonymous_variant 0.26
rpoC 764650 c.1281G>T synonymous_variant 0.27
rpoC 764695 c.1326T>G synonymous_variant 0.27
rpoC 764716 c.1347G>C synonymous_variant 0.27
rpoC 764749 c.1380G>C synonymous_variant 0.26
rpoC 764752 c.1383G>C synonymous_variant 0.26
rpoC 764764 c.1395T>C synonymous_variant 0.25
rpoC 764803 c.1434C>T synonymous_variant 0.24
rpoC 764815 c.1446A>G synonymous_variant 0.24
rpoC 764824 c.1455T>C synonymous_variant 0.23
rpoC 764827 c.1458G>C synonymous_variant 0.25
rpoC 764830 c.1461C>G synonymous_variant 0.23
rpoC 764858 c.1489T>C synonymous_variant 0.23
rpoC 764888 c.1519T>C synonymous_variant 0.26
rpoC 764893 c.1524T>C synonymous_variant 0.26
rpoC 764911 c.1542A>G synonymous_variant 0.26
rpoC 764923 c.1554A>G synonymous_variant 0.25
rpoC 764948 c.1579T>C synonymous_variant 0.22
rpoC 764962 c.1593G>C synonymous_variant 0.23
rpoC 764968 c.1599T>C synonymous_variant 0.22
rpoC 764983 c.1614T>C synonymous_variant 0.2
rpoC 764995 c.1626C>G synonymous_variant 0.2
rpoC 764998 c.1629G>A synonymous_variant 0.2
rpoC 765008 c.1639T>C synonymous_variant 0.19
rpoC 765016 c.1647C>G synonymous_variant 0.19
rpoC 765150 p.Gly594Glu missense_variant 1.0
rpoC 765467 c.2098C>T synonymous_variant 0.22
rpoC 765478 c.2109T>C synonymous_variant 0.27
rpoC 765499 c.2130C>G synonymous_variant 0.33
rpoC 765541 c.2172C>G synonymous_variant 0.27
rpoC 765553 c.2184C>T synonymous_variant 0.35
rpoC 765556 c.2187G>C synonymous_variant 0.35
rpoC 765559 c.2190G>C synonymous_variant 0.35
rpoC 765583 c.2214G>T synonymous_variant 0.38
rpoC 765625 c.2256C>G synonymous_variant 0.39
rpoC 765631 p.Asp754Glu missense_variant 0.38
rpoC 765658 c.2289C>T synonymous_variant 0.43
rpoC 765700 c.2331T>C synonymous_variant 0.44
rpoC 765734 c.2365T>C synonymous_variant 0.43
rpoC 765739 c.2370G>C synonymous_variant 0.43
rpoC 765751 c.2382C>G synonymous_variant 0.43
rpoC 765752 p.Asp795Ser missense_variant 0.43
rpoC 765772 c.2403C>G synonymous_variant 0.4
rpoC 765784 c.2415C>G synonymous_variant 0.38
rpoC 765796 c.2427C>T synonymous_variant 0.37
rpoC 765811 c.2442T>C synonymous_variant 0.35
rpoC 765814 c.2445A>G synonymous_variant 0.34
rpoC 765826 c.2457T>C synonymous_variant 0.31
rpoC 765883 c.2514C>G synonymous_variant 0.24
rpoC 765886 c.2517C>G synonymous_variant 0.23
rpoC 765892 c.2523T>C synonymous_variant 0.23
rpoC 765928 c.2559C>G synonymous_variant 0.19
rpoC 765937 c.2568T>C synonymous_variant 0.21
rpoC 765947 c.2578T>C synonymous_variant 0.2
rpoC 765967 c.2598C>T synonymous_variant 0.2
rpoC 765979 c.2610C>G synonymous_variant 0.23
rpoC 765982 c.2613C>T synonymous_variant 0.23
rpoC 765994 c.2625A>T synonymous_variant 0.21
rpoC 766010 c.2641_2642delTCinsAG synonymous_variant 0.18
rpoC 766027 c.2658G>C synonymous_variant 0.23
rpoC 766043 p.Gln892Glu missense_variant 0.22
rpoC 766054 c.2685C>T synonymous_variant 0.23
rpoC 766061 p.Val898Leu missense_variant 0.23
rpoC 766081 c.2712T>C synonymous_variant 0.21
rpoC 766082 p.Ala905Gln missense_variant 0.21
rpoC 766129 c.2760C>G synonymous_variant 0.17
rpoC 766141 c.2772C>T synonymous_variant 0.16
rpoC 766142 c.2773C>T synonymous_variant 0.16
rpoC 766168 c.2799C>G synonymous_variant 0.18
rpoC 766393 c.3024C>G synonymous_variant 0.17
rpoC 766408 c.3039C>T synonymous_variant 0.19
rpoC 766426 c.3057C>T synonymous_variant 0.21
rpoC 766447 c.3078T>C synonymous_variant 0.24
rpoC 766456 c.3087C>G synonymous_variant 0.25
rpoC 766471 c.3102G>C synonymous_variant 0.24
rpoC 766486 c.3117A>G synonymous_variant 0.25
rpoC 766492 c.3123T>C synonymous_variant 0.24
rpoC 766522 c.3153C>G synonymous_variant 0.24
rpoC 766528 c.3159T>C synonymous_variant 0.2
rpoC 766530 p.Arg1054Gln missense_variant 0.2
rpoC 766573 c.3204T>C synonymous_variant 0.2
rpoC 766582 c.3213C>G synonymous_variant 0.17
rpoC 766583 p.Gly1072Ser missense_variant 0.17
rpoC 766594 c.3225G>C synonymous_variant 0.17
rpoC 766607 p.Ile1080Leu missense_variant 0.22
rpoC 766630 c.3261G>T synonymous_variant 0.24
rpoC 766633 c.3264G>C synonymous_variant 0.24
rpoC 766645 c.3276A>G synonymous_variant 0.25
rpoC 766651 c.3282T>G synonymous_variant 0.25
rpoC 766657 c.3288A>G synonymous_variant 0.23
rpoC 766666 c.3297C>G synonymous_variant 0.23
rpoC 766672 c.3303T>C synonymous_variant 0.23
rpoC 766708 c.3339A>G synonymous_variant 0.21
rpoC 766726 c.3357T>C synonymous_variant 0.22
rpoC 766738 c.3369G>C synonymous_variant 0.23
rpoC 766750 c.3381C>G synonymous_variant 0.23
rpoC 766765 c.3396A>C synonymous_variant 0.29
rpoC 766774 c.3405T>C synonymous_variant 0.27
rpoC 766804 c.3435A>G synonymous_variant 0.25
rpoC 766861 c.3492G>C synonymous_variant 0.18
rpoC 766864 c.3495G>C synonymous_variant 0.17
rpoC 766894 c.3525T>C synonymous_variant 0.17
rpoC 766895 c.3526T>C synonymous_variant 0.17
rpoC 766900 c.3531T>C synonymous_variant 0.17
rpoC 766933 c.3564A>G synonymous_variant 0.25
rpoC 766942 c.3573C>T synonymous_variant 0.19
rpoC 766945 c.3576A>G synonymous_variant 0.2
rpoC 766996 c.3627C>T synonymous_variant 0.21
rpoC 767035 c.3666G>C synonymous_variant 0.21
rpoC 767059 c.3690T>G synonymous_variant 0.17
rpoC 767062 c.3693C>A synonymous_variant 0.16
rpoC 767098 c.3729T>C synonymous_variant 0.17
rpoC 767134 c.3765C>A synonymous_variant 0.16
rpoC 767158 c.3789T>C synonymous_variant 0.17
mmpL5 775639 p.Ile948Val missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781655 c.96T>C synonymous_variant 0.18
rpsL 781658 c.99A>G synonymous_variant 0.18
rpsL 781682 c.123T>C synonymous_variant 0.22
rpsL 781703 c.144G>T synonymous_variant 0.23
rpsL 781706 c.147T>G synonymous_variant 0.28
rpsL 781715 c.156T>C synonymous_variant 0.28
rpsL 781718 c.159C>G synonymous_variant 0.28
rpsL 781728 c.169T>C synonymous_variant 0.29
rpsL 781736 c.177T>C synonymous_variant 0.3
rpsL 781751 c.192G>C synonymous_variant 0.32
rpsL 781754 c.195G>C synonymous_variant 0.33
rpsL 781760 c.201T>C synonymous_variant 0.33
rpsL 781763 c.204C>G synonymous_variant 0.33
rpsL 781808 c.249C>T synonymous_variant 0.29
rpsL 781811 c.252C>T synonymous_variant 0.29
rpsL 781820 c.261G>C synonymous_variant 0.3
rpsL 781832 c.273T>C synonymous_variant 0.29
rpsL 781835 c.276T>C synonymous_variant 0.3
rpsL 781841 c.282C>G synonymous_variant 0.3
rpsL 781865 c.306G>C synonymous_variant 0.23
rpsL 781868 c.309T>C synonymous_variant 0.23
rpsL 781871 c.312G>C synonymous_variant 0.23
rpsL 781877 c.318T>G synonymous_variant 0.24
rpsL 781892 c.333A>G synonymous_variant 0.19
rpsL 781898 c.339A>T synonymous_variant 0.19
rpsL 781916 c.357T>C synonymous_variant 0.21
rpsL 781929 p.Gly124Ser missense_variant 0.21
rplC 800612 c.-197A>G upstream_gene_variant 0.2
rplC 800648 c.-161A>T upstream_gene_variant 0.22
rplC 800654 c.-155T>C upstream_gene_variant 0.22
rplC 800693 c.-116A>G upstream_gene_variant 0.21
rplC 800715 c.-94A>C upstream_gene_variant 0.24
rplC 800720 c.-89T>C upstream_gene_variant 0.24
rplC 800723 c.-86C>G upstream_gene_variant 0.24
rplC 800738 c.-71T>C upstream_gene_variant 0.24
rplC 800747 c.-62C>G upstream_gene_variant 0.25
rplC 800771 c.-38C>T upstream_gene_variant 0.23
rplC 800793 c.-15_-11delAGATT upstream_gene_variant 0.24
rplC 800803 c.-6A>C upstream_gene_variant 0.25
rplC 800804 c.-4delA upstream_gene_variant 0.23
rplC 800815 c.7C>A synonymous_variant 0.23
rplC 800820 c.12G>A synonymous_variant 0.23
rplC 800829 c.21C>G synonymous_variant 0.23
rplC 800844 c.36T>C synonymous_variant 0.22
rplC 800856 c.48A>G synonymous_variant 0.23
rplC 800865 c.57A>G synonymous_variant 0.21
rplC 800867 p.Ser20Asn missense_variant 0.21
rplC 800872 c.64_66delAGAinsCGG synonymous_variant 0.2
rplC 800875 p.Val23Ile missense_variant 0.19
rplC 800880 c.72A>C synonymous_variant 0.19
rplC 800889 c.81C>G synonymous_variant 0.2
rplC 800901 c.93C>G synonymous_variant 0.22
rplC 800916 c.108A>C synonymous_variant 0.2
fbiC 1303812 c.882C>T synonymous_variant 0.18
fbiC 1303842 c.912C>G synonymous_variant 0.19
fbiC 1303846 p.Phe306Val missense_variant 0.19
fbiC 1303851 c.921C>G synonymous_variant 0.19
fbiC 1303854 c.924T>C synonymous_variant 0.2
fbiC 1303855 p.Ala309Thr missense_variant 0.19
fbiC 1303860 c.930A>C synonymous_variant 0.22
fbiC 1303869 c.939T>C synonymous_variant 0.2
fbiC 1303881 c.951G>C synonymous_variant 0.19
fbiC 1303884 c.954T>G synonymous_variant 0.19
fbiC 1303887 c.957G>C synonymous_variant 0.19
fbiC 1303897 c.967C>T synonymous_variant 0.19
fbiC 1303905 c.975G>C synonymous_variant 0.19
fbiC 1303908 c.978C>G synonymous_variant 0.19
fbiC 1303935 c.1005G>C synonymous_variant 0.18
fbiC 1303938 c.1008C>T synonymous_variant 0.2
fbiC 1303947 c.1017T>C synonymous_variant 0.19
fbiC 1303948 p.Gly340Arg missense_variant 0.19
fbiC 1303961 p.Arg344Leu missense_variant 0.18
fbiC 1303971 c.1041T>G synonymous_variant 0.17
fbiC 1303974 c.1044C>T synonymous_variant 0.17
fbiC 1304875 p.Ile649Val missense_variant 0.17
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472030 n.185G>T non_coding_transcript_exon_variant 0.16
rrs 1472031 n.186G>T non_coding_transcript_exon_variant 0.16
rrs 1472094 n.249T>A non_coding_transcript_exon_variant 0.2
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.19
rrs 1473105 n.1260G>A non_coding_transcript_exon_variant 0.21
rrl 1473839 n.182G>T non_coding_transcript_exon_variant 0.24
rrl 1473877 n.220G>A non_coding_transcript_exon_variant 0.29
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.3
rrl 1473899 n.242A>T non_coding_transcript_exon_variant 0.3
rrl 1473937 n.280C>T non_coding_transcript_exon_variant 0.29
rrl 1473944 n.287G>A non_coding_transcript_exon_variant 0.29
rrl 1473995 n.338G>T non_coding_transcript_exon_variant 0.39
rrl 1474001 n.344C>T non_coding_transcript_exon_variant 0.35
rrl 1474009 n.352A>G non_coding_transcript_exon_variant 0.35
rrl 1474012 n.355C>T non_coding_transcript_exon_variant 0.35
rrl 1474051 n.394T>C non_coding_transcript_exon_variant 0.38
rrl 1474054 n.397T>C non_coding_transcript_exon_variant 0.35
rrl 1474056 n.399T>C non_coding_transcript_exon_variant 0.33
rrl 1474071 n.414G>A non_coding_transcript_exon_variant 0.35
rrl 1474099 n.442G>A non_coding_transcript_exon_variant 0.34
rrl 1474103 n.446A>T non_coding_transcript_exon_variant 0.34
rrl 1474111 n.454T>C non_coding_transcript_exon_variant 0.38
rrl 1474112 n.455T>A non_coding_transcript_exon_variant 0.38
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.32
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.34
rrl 1474181 n.524C>T non_coding_transcript_exon_variant 0.31
rrl 1474308 n.651G>T non_coding_transcript_exon_variant 0.17
rrl 1474310 n.653T>G non_coding_transcript_exon_variant 0.18
rrl 1474356 n.699T>C non_coding_transcript_exon_variant 0.25
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.27
rrl 1474376 n.719T>C non_coding_transcript_exon_variant 0.27
rrl 1474409 n.756_766delACCCACACGCG non_coding_transcript_exon_variant 0.22
rrl 1474427 n.770A>C non_coding_transcript_exon_variant 0.24
rrl 1474429 n.772G>C non_coding_transcript_exon_variant 0.21
rrl 1474435 n.780_783delGAAT non_coding_transcript_exon_variant 0.22
rrl 1474627 n.970G>A non_coding_transcript_exon_variant 0.28
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.28
rrl 1474639 n.982G>A non_coding_transcript_exon_variant 0.28
rrl 1474717 n.1060A>T non_coding_transcript_exon_variant 0.4
rrl 1474753 n.1096A>G non_coding_transcript_exon_variant 0.36
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.32
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.31
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.29
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 0.29
rrl 1474952 n.1296_1300delCATCC non_coding_transcript_exon_variant 0.28
rrl 1474961 n.1304T>G non_coding_transcript_exon_variant 0.27
rrl 1474962 n.1305T>C non_coding_transcript_exon_variant 0.28
rrl 1474963 n.1306G>A non_coding_transcript_exon_variant 0.28
rrl 1474964 n.1307T>A non_coding_transcript_exon_variant 0.28
rrl 1474967 n.1311_1315delGGGTG non_coding_transcript_exon_variant 0.28
rrl 1474991 n.1334T>C non_coding_transcript_exon_variant 0.24
rrl 1474995 n.1338T>G non_coding_transcript_exon_variant 0.24
rrl 1475005 n.1348C>T non_coding_transcript_exon_variant 0.25
rrl 1475013 n.1356G>A non_coding_transcript_exon_variant 0.23
rrl 1475027 n.1370G>T non_coding_transcript_exon_variant 0.27
rrl 1475028 n.1371G>T non_coding_transcript_exon_variant 0.27
rrl 1475061 n.1404C>T non_coding_transcript_exon_variant 0.29
rrl 1475088 n.1431A>T non_coding_transcript_exon_variant 0.29
rrl 1475202 n.1545G>C non_coding_transcript_exon_variant 0.26
rrl 1475206 n.1549C>T non_coding_transcript_exon_variant 0.26
rrl 1475209 n.1552G>C non_coding_transcript_exon_variant 0.26
rrl 1475213 n.1556C>T non_coding_transcript_exon_variant 0.29
rrl 1475249 n.1592T>C non_coding_transcript_exon_variant 0.35
rrl 1475252 n.1595C>T non_coding_transcript_exon_variant 0.35
rrl 1475266 n.1609T>C non_coding_transcript_exon_variant 0.36
rrl 1475275 n.1618C>T non_coding_transcript_exon_variant 0.34
rrl 1475276 n.1619T>C non_coding_transcript_exon_variant 0.35
rrl 1475291 n.1634A>C non_coding_transcript_exon_variant 0.35
rrl 1475315 n.1658A>T non_coding_transcript_exon_variant 0.29
rrl 1475355 n.1698C>T non_coding_transcript_exon_variant 0.24
rrl 1475387 n.1730C>T non_coding_transcript_exon_variant 0.26
rrl 1475402 n.1745C>T non_coding_transcript_exon_variant 0.24
rrl 1475419 n.1762C>T non_coding_transcript_exon_variant 0.26
rrl 1475429 n.1772G>A non_coding_transcript_exon_variant 0.28
rrl 1475436 n.1779C>T non_coding_transcript_exon_variant 0.24
rrl 1475504 n.1847C>A non_coding_transcript_exon_variant 0.65
rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 0.35
rrl 1475599 n.1942A>G non_coding_transcript_exon_variant 0.37
rrl 1475603 n.1946G>A non_coding_transcript_exon_variant 0.35
rrl 1475638 n.1981C>T non_coding_transcript_exon_variant 0.3
rrl 1475642 n.1985T>C non_coding_transcript_exon_variant 0.31
rrl 1475657 n.2000A>G non_coding_transcript_exon_variant 0.3
rrl 1475659 n.2002G>T non_coding_transcript_exon_variant 0.3
rrl 1475765 n.2111delG non_coding_transcript_exon_variant 0.37
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.31
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.25
rrl 1476033 n.2376T>C non_coding_transcript_exon_variant 0.39
rrl 1476035 n.2378G>A non_coding_transcript_exon_variant 0.39
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 0.47
rrl 1476089 n.2432T>C non_coding_transcript_exon_variant 0.45
rrl 1476095 n.2438C>G non_coding_transcript_exon_variant 0.47
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.49
rrl 1476117 n.2460G>C non_coding_transcript_exon_variant 0.49
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.47
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.47
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.44
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.31
rrl 1476583 n.2926G>A non_coding_transcript_exon_variant 0.17
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.16
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.17
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.16
inhA 1673772 c.-430C>G upstream_gene_variant 0.2
inhA 1673799 c.-403T>C upstream_gene_variant 0.21
inhA 1673802 c.-400A>G upstream_gene_variant 0.21
inhA 1674331 c.130C>T synonymous_variant 0.3
inhA 1674342 c.141T>C synonymous_variant 0.3
inhA 1674352 p.Thr51Ala missense_variant 0.29
inhA 1674368 p.Ala56Glu missense_variant 0.3
inhA 1674382 p.Leu61Ile missense_variant 0.35
inhA 1674399 c.198A>G synonymous_variant 0.26
inhA 1674415 p.Ala72Asn missense_variant 0.25
inhA 1674421 c.220T>C synonymous_variant 0.26
inhA 1674428 p.Gly76Glu missense_variant 0.26
inhA 1674435 c.234G>C synonymous_variant 0.19
inhA 1674440 p.Glu80Ala missense_variant 0.21
inhA 1674443 p.Ala81Glu missense_variant 0.21
inhA 1674450 c.249G>T synonymous_variant 0.27
inhA 1674465 c.264C>G synonymous_variant 0.35
inhA 1674471 c.270G>C synonymous_variant 0.32
inhA 1674480 c.279T>C synonymous_variant 0.29
inhA 1674483 c.282G>C synonymous_variant 0.28
inhA 1674486 c.285T>C synonymous_variant 0.28
inhA 1674489 c.288G>C synonymous_variant 0.28
inhA 1674507 c.306G>C synonymous_variant 0.29
inhA 1674542 p.Ala114Glu missense_variant 0.32
inhA 1674546 c.345T>C synonymous_variant 0.31
inhA 1674549 c.348G>C synonymous_variant 0.29
inhA 1674576 c.375T>C synonymous_variant 0.32
inhA 1674582 c.381T>C synonymous_variant 0.33
inhA 1674585 c.384T>C synonymous_variant 0.33
inhA 1674589 p.Met130Leu missense_variant 0.33
inhA 1674624 c.423A>C synonymous_variant 0.41
inhA 1674627 c.426T>G synonymous_variant 0.41
inhA 1674639 c.438C>G synonymous_variant 0.41
inhA 1674654 c.453G>C synonymous_variant 0.41
inhA 1674660 c.459G>C synonymous_variant 0.41
inhA 1674663 c.462G>C synonymous_variant 0.42
inhA 1674669 c.468G>C synonymous_variant 0.39
inhA 1674690 c.489C>G synonymous_variant 0.37
inhA 1674703 c.502T>C synonymous_variant 0.38
inhA 1674708 c.507G>A synonymous_variant 0.38
inhA 1674718 c.517A>C synonymous_variant 0.3
inhA 1674726 c.525G>C synonymous_variant 0.33
inhA 1674729 c.528G>C synonymous_variant 0.36
inhA 1674750 c.549T>G synonymous_variant 0.4
inhA 1674759 c.558G>C synonymous_variant 0.4
inhA 1674771 c.570C>G synonymous_variant 0.38
inhA 1674774 c.573A>G synonymous_variant 0.38
inhA 1674780 c.579T>C synonymous_variant 0.38
inhA 1674799 c.598_600delAGTinsTCG synonymous_variant 0.27
inhA 1674846 p.Ile215Met missense_variant 0.27
inhA 1674858 c.657G>A synonymous_variant 0.25
inhA 1674870 c.669T>C synonymous_variant 0.25
inhA 1674879 c.678T>G synonymous_variant 0.25
inhA 1674903 c.702T>C synonymous_variant 0.25
inhA 1674904 p.Ala235Pro missense_variant 0.25
inhA 1674912 c.711G>C synonymous_variant 0.25
inhA 1674933 c.732G>C synonymous_variant 0.23
inhA 1674934 p.Leu245Val missense_variant 0.23
inhA 1674939 c.738G>C synonymous_variant 0.21
inhA 1674942 c.741T>G synonymous_variant 0.21
inhA 1674954 c.753G>C synonymous_variant 0.21
inhA 1674957 c.756G>C synonymous_variant 0.25
inhA 1674963 c.762G>C synonymous_variant 0.25
inhA 1674966 c.765T>C synonymous_variant 0.25
inhA 1674967 p.Asp256Thr missense_variant 0.23
inhA 1674977 p.Tyr259Phe missense_variant 0.25
inhA 1674994 p.His265Asn missense_variant 0.15
rpsA 1833661 c.120A>G synonymous_variant 0.18
rpsA 1833664 c.123C>G synonymous_variant 0.18
rpsA 1833667 c.126C>G synonymous_variant 0.18
rpsA 1833721 c.180A>G synonymous_variant 0.2
rpsA 1833727 c.186G>C synonymous_variant 0.19
rpsA 1833742 c.201A>G synonymous_variant 0.2
rpsA 1833745 c.204G>C synonymous_variant 0.2
rpsA 1833754 c.213G>A synonymous_variant 0.23
rpsA 1833760 c.219C>T synonymous_variant 0.21
rpsA 1833787 c.246C>G synonymous_variant 0.26
rpsA 1833790 c.249T>C synonymous_variant 0.26
rpsA 1833793 c.252C>T synonymous_variant 0.26
rpsA 1833802 c.261A>G synonymous_variant 0.27
rpsA 1833805 c.264C>T synonymous_variant 0.27
rpsA 1833808 c.267G>C synonymous_variant 0.27
rpsA 1833811 c.270G>T synonymous_variant 0.27
rpsA 1833838 c.297G>C synonymous_variant 0.33
rpsA 1833841 c.300C>G synonymous_variant 0.33
rpsA 1833847 c.306C>G synonymous_variant 0.37
rpsA 1833856 c.315A>G synonymous_variant 0.35
rpsA 1833871 c.330G>A synonymous_variant 0.29
rpsA 1833874 c.333T>C synonymous_variant 0.28
rpsA 1833895 c.354G>C synonymous_variant 0.26
rpsA 1833928 c.387G>C synonymous_variant 0.25
rpsA 1833940 c.399C>G synonymous_variant 0.22
rpsA 1833949 c.408T>G synonymous_variant 0.23
rpsA 1833970 c.429G>C synonymous_variant 0.18
rpsA 1833979 c.438T>C synonymous_variant 0.18
rpsA 1834102 c.561T>G synonymous_variant 0.18
rpsA 1834177 c.636A>C synonymous_variant 0.17
rpsA 1834222 c.681T>C synonymous_variant 0.19
rpsA 1834240 c.699T>C synonymous_variant 0.31
rpsA 1834249 c.708T>C synonymous_variant 0.35
rpsA 1834261 c.720A>G synonymous_variant 0.36
rpsA 1834264 c.723G>C synonymous_variant 0.36
rpsA 1834294 c.753G>C synonymous_variant 0.4
rpsA 1834303 c.762T>G synonymous_variant 0.39
rpsA 1834306 c.765T>C synonymous_variant 0.39
rpsA 1834348 c.807T>C synonymous_variant 0.45
rpsA 1834351 c.810G>A synonymous_variant 0.45
rpsA 1834366 c.825A>G synonymous_variant 0.47
rpsA 1834375 c.834G>A synonymous_variant 0.48
rpsA 1834378 c.837T>C synonymous_variant 0.48
rpsA 1834411 c.870T>G synonymous_variant 0.53
rpsA 1834417 c.876G>C synonymous_variant 0.49
rpsA 1834423 c.882G>C synonymous_variant 0.49
rpsA 1834435 c.894G>C synonymous_variant 0.46
rpsA 1834451 c.910T>C synonymous_variant 0.44
rpsA 1834456 c.915T>G synonymous_variant 0.46
rpsA 1834465 c.924T>C synonymous_variant 0.46
rpsA 1834468 c.927A>G synonymous_variant 0.44
rpsA 1834474 c.933C>G synonymous_variant 0.43
rpsA 1834489 c.948T>C synonymous_variant 0.41
rpsA 1834528 c.987T>C synonymous_variant 0.48
rpsA 1834540 c.999G>C synonymous_variant 0.43
rpsA 1834546 c.1005T>C synonymous_variant 0.4
rpsA 1834555 c.1014T>C synonymous_variant 0.4
rpsA 1834609 c.1068T>C synonymous_variant 0.32
rpsA 1834633 c.1092A>G synonymous_variant 0.3
rpsA 1834639 c.1098T>C synonymous_variant 0.3
rpsA 1834690 c.1149T>C synonymous_variant 0.24
tlyA 1917972 c.33A>G synonymous_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
pncA 2289945 c.-704T>C upstream_gene_variant 0.17
kasA 2517974 c.-141T>C upstream_gene_variant 0.17
kasA 2517993 c.-122G>T upstream_gene_variant 0.15
kasA 2518076 c.-39C>T upstream_gene_variant 0.85
kasA 2518444 c.330T>C synonymous_variant 0.18
kasA 2518447 c.333T>G synonymous_variant 0.18
kasA 2518459 c.345T>G synonymous_variant 0.22
kasA 2518462 c.348A>C synonymous_variant 0.24
kasA 2518468 c.354A>C synonymous_variant 0.26
kasA 2518475 c.361A>C synonymous_variant 0.29
kasA 2518480 c.366T>C synonymous_variant 0.29
kasA 2518504 c.390T>C synonymous_variant 0.35
kasA 2518506 p.Ala131Glu missense_variant 0.36
kasA 2518513 c.399C>G synonymous_variant 0.38
kasA 2518519 c.405G>C synonymous_variant 0.38
kasA 2518528 c.414C>G synonymous_variant 0.42
kasA 2518534 c.420G>C synonymous_variant 0.41
kasA 2518561 c.447T>C synonymous_variant 0.4
kasA 2518570 c.456G>C synonymous_variant 0.41
kasA 2518574 p.Ile154Val missense_variant 0.42
kasA 2518579 c.465T>C synonymous_variant 0.41
kasA 2518588 c.474T>C synonymous_variant 0.43
kasA 2518594 c.480C>G synonymous_variant 0.42
kasA 2518597 c.483C>G synonymous_variant 0.41
kasA 2518609 p.Met165Ile missense_variant 0.45
kasA 2518639 c.525G>C synonymous_variant 0.43
kasA 2518657 c.543G>C synonymous_variant 0.38
kasA 2518663 c.549T>C synonymous_variant 0.38
kasA 2518672 c.558G>C synonymous_variant 0.42
kasA 2518678 c.564C>T synonymous_variant 0.45
kasA 2518684 c.570C>G synonymous_variant 0.42
kasA 2518702 c.588C>T synonymous_variant 0.38
kasA 2518705 c.591T>C synonymous_variant 0.42
kasA 2518711 c.597A>G synonymous_variant 0.41
kasA 2518714 c.600A>C synonymous_variant 0.41
kasA 2518747 c.633C>G synonymous_variant 0.38
kasA 2518783 c.669T>C synonymous_variant 0.33
kasA 2518789 c.675G>C synonymous_variant 0.34
kasA 2518792 c.678C>G synonymous_variant 0.33
kasA 2518795 c.681C>G synonymous_variant 0.32
kasA 2518807 c.693C>T synonymous_variant 0.32
kasA 2518822 c.708C>G synonymous_variant 0.3
kasA 2518825 c.711T>C synonymous_variant 0.31
kasA 2518843 c.729T>G synonymous_variant 0.23
kasA 2518846 c.732G>C synonymous_variant 0.23
kasA 2518847 p.Leu245Met missense_variant 0.23
kasA 2518864 c.750G>C synonymous_variant 0.22
kasA 2518879 c.765A>G synonymous_variant 0.22
kasA 2518885 c.771T>C synonymous_variant 0.22
kasA 2518898 c.784T>C synonymous_variant 0.18
kasA 2518910 p.Leu266Met missense_variant 0.16
Rv2752c 3065659 p.Pro178Leu missense_variant 0.15
Rv2752c 3066075 c.117A>G synonymous_variant 0.19
Rv2752c 3066081 c.111G>C synonymous_variant 0.22
Rv2752c 3066087 c.105A>G synonymous_variant 0.22
Rv2752c 3066114 c.78A>G synonymous_variant 0.26
Rv2752c 3066118 p.Asn25Ser missense_variant 0.24
Rv2752c 3066150 c.42C>T synonymous_variant 0.25
Rv2752c 3066155 p.Ser13Thr missense_variant 0.2
Rv2752c 3066168 c.24A>C synonymous_variant 0.2
Rv2752c 3066171 c.21G>T synonymous_variant 0.2
Rv2752c 3066176 p.Pro6Ala missense_variant 0.2
Rv2752c 3066177 c.15T>C synonymous_variant 0.2
Rv2752c 3066194 c.-3G>T upstream_gene_variant 0.2
Rv2752c 3066195 c.-4A>G upstream_gene_variant 0.2
Rv2752c 3066206 c.-15A>G upstream_gene_variant 0.21
Rv2752c 3066210 c.-30_-20delTCTAAAGGTGA upstream_gene_variant 0.21
Rv2752c 3066228 c.-37T>C upstream_gene_variant 0.24
Rv2752c 3066237 c.-46C>G upstream_gene_variant 0.25
Rv2752c 3066260 c.-69T>C upstream_gene_variant 0.25
Rv2752c 3066264 c.-73C>T upstream_gene_variant 0.27
Rv2752c 3066276 c.-85G>C upstream_gene_variant 0.21
Rv2752c 3066279 c.-88A>G upstream_gene_variant 0.18
Rv2752c 3066285 c.-96_-94delGCCinsCCG upstream_gene_variant 0.18
Rv2752c 3066290 c.-99G>A upstream_gene_variant 0.17
Rv2752c 3066309 c.-118T>C upstream_gene_variant 0.17
Rv2752c 3066312 c.-121C>T upstream_gene_variant 0.19
Rv2752c 3066320 c.-129A>G upstream_gene_variant 0.18
Rv2752c 3066330 c.-139G>C upstream_gene_variant 0.2
Rv2752c 3066335 c.-144T>C upstream_gene_variant 0.18
Rv2752c 3066350 c.-159T>A upstream_gene_variant 0.18
thyA 3073959 c.513T>C synonymous_variant 0.2
thyA 3073977 c.495A>G synonymous_variant 0.24
thyA 3073980 c.492C>T synonymous_variant 0.23
thyA 3073983 c.489C>G synonymous_variant 0.23
thyA 3073989 c.483T>C synonymous_variant 0.26
thyA 3074004 c.468T>C synonymous_variant 0.26
thyA 3074010 c.462C>G synonymous_variant 0.25
thyA 3074031 c.441T>C synonymous_variant 0.2
thyA 3074037 c.435C>G synonymous_variant 0.2
thyA 3074053 p.Arg140Gln missense_variant 0.19
thyA 3074056 p.Glu139Pro missense_variant 0.19
thyA 3074061 c.411A>G synonymous_variant 0.19
thyA 3074064 c.408C>G synonymous_variant 0.18
thyA 3074076 c.396C>G synonymous_variant 0.2
thyA 3074097 c.375C>G synonymous_variant 0.2
thyA 3074100 p.Asp124Asn missense_variant 0.2
thyA 3074103 c.369C>G synonymous_variant 0.21
thyA 3074106 c.366T>C synonymous_variant 0.21
thyA 3074121 p.Asp117Glu missense_variant 0.2
thyA 3074130 c.342G>C synonymous_variant 0.21
thyA 3074147 p.Ile109Val missense_variant 0.19
thyA 3074154 c.318T>C synonymous_variant 0.18
thyA 3074165 p.Ala103Thr missense_variant 0.16
thyA 3074205 p.Glu89Asp missense_variant 0.15
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
fbiA 3641351 p.Ala270Asp missense_variant 0.15
rpoA 3877613 p.Ile299Val missense_variant 0.18
rpoA 3877656 c.852T>C synonymous_variant 0.24
rpoA 3877668 c.840A>G synonymous_variant 0.23
rpoA 3877677 p.Ala277Ser missense_variant 0.19
rpoA 3877680 c.828G>C synonymous_variant 0.2
rpoA 3877686 c.822A>G synonymous_variant 0.22
rpoA 3877692 c.816G>C synonymous_variant 0.23
rpoA 3877695 c.813C>G synonymous_variant 0.22
rpoA 3877704 c.804G>C synonymous_variant 0.22
rpoA 3877728 c.780C>G synonymous_variant 0.27
rpoA 3877743 c.765T>C synonymous_variant 0.29
rpoA 3877764 c.744C>G synonymous_variant 0.29
rpoA 3877770 c.738A>G synonymous_variant 0.27
rpoA 3877773 c.735G>C synonymous_variant 0.25
rpoA 3877776 c.732T>C synonymous_variant 0.26
rpoA 3877782 c.726T>C synonymous_variant 0.27
rpoA 3877803 c.705G>C synonymous_variant 0.28
rpoA 3877818 c.690A>G synonymous_variant 0.29
rpoA 3877839 c.669G>C synonymous_variant 0.26
rpoA 3877848 c.660C>G synonymous_variant 0.27
rpoA 3877857 c.651G>A synonymous_variant 0.23
rpoA 3877875 c.633T>C synonymous_variant 0.21
rpoA 3877920 c.588G>C synonymous_variant 0.2
rpoA 3877934 c.574C>T synonymous_variant 0.22
rpoA 3877962 c.546G>T synonymous_variant 0.22
rpoA 3877968 c.540C>G synonymous_variant 0.21
rpoA 3877974 c.534G>C synonymous_variant 0.2
rpoA 3877989 c.519A>G synonymous_variant 0.19
rpoA 3878019 c.489A>G synonymous_variant 0.26
rpoA 3878022 c.486T>C synonymous_variant 0.27
rpoA 3878031 c.477T>C synonymous_variant 0.27
rpoA 3878040 c.468T>C synonymous_variant 0.26
rpoA 3878043 c.465G>C synonymous_variant 0.26
rpoA 3878046 c.462T>A synonymous_variant 0.26
rpoA 3878055 c.453A>G synonymous_variant 0.26
rpoA 3878067 c.441C>T synonymous_variant 0.23
rpoA 3878070 c.438T>C synonymous_variant 0.23
rpoA 3878073 c.435C>T synonymous_variant 0.24
rpoA 3878082 c.426T>G synonymous_variant 0.25
rpoA 3878103 c.405A>G synonymous_variant 0.27
rpoA 3878106 c.402G>C synonymous_variant 0.28
rpoA 3878118 c.390T>C synonymous_variant 0.33
rpoA 3878130 c.378C>G synonymous_variant 0.36
rpoA 3878142 p.Gly122Glu missense_variant 0.36
rpoA 3878157 c.351C>G synonymous_variant 0.36
rpoA 3878163 c.345C>T synonymous_variant 0.39
rpoA 3878169 c.339G>C synonymous_variant 0.39
rpoA 3878184 c.324C>T synonymous_variant 0.38
rpoA 3878193 c.315T>C synonymous_variant 0.38
rpoA 3878197 p.Glu104Ala missense_variant 0.37
rpoA 3878199 c.309T>C synonymous_variant 0.38
rpoA 3878205 c.303T>C synonymous_variant 0.38
rpoA 3878217 c.291A>G synonymous_variant 0.39
rpoA 3878264 p.Ser82Gly missense_variant 0.45
rpoA 3878271 c.237T>C synonymous_variant 0.43
rpoA 3878284 p.Glu75Ala missense_variant 0.4
rpoA 3878292 c.216T>C synonymous_variant 0.38
rpoA 3878298 c.210A>G synonymous_variant 0.39
rpoA 3878301 c.207C>G synonymous_variant 0.39
rpoA 3878309 p.Pro67Ala missense_variant 0.39
rpoA 3878310 c.198G>C synonymous_variant 0.39
rpoA 3878313 c.195G>C synonymous_variant 0.41
rpoA 3878322 c.186A>G synonymous_variant 0.42
rpoA 3878331 c.177A>G synonymous_variant 0.41
rpoA 3878334 c.174T>C synonymous_variant 0.41
rpoA 3878337 c.171T>C synonymous_variant 0.42
rpoA 3878346 c.162T>C synonymous_variant 0.44
rpoA 3878364 c.144A>C synonymous_variant 0.38
rpoA 3878367 c.141C>G synonymous_variant 0.38
rpoA 3878370 c.138T>C synonymous_variant 0.38
rpoA 3878385 c.123C>G synonymous_variant 0.42
rpoA 3878388 c.120C>G synonymous_variant 0.42
rpoA 3878391 c.117T>C synonymous_variant 0.42
rpoA 3878415 c.93C>T synonymous_variant 0.41
rpoA 3878424 c.84G>C synonymous_variant 0.43
rpoA 3878430 c.78G>C synonymous_variant 0.41
rpoA 3878433 c.75G>C synonymous_variant 0.41
rpoA 3878436 c.72A>G synonymous_variant 0.41
rpoA 3878442 c.66G>C synonymous_variant 0.41
rpoA 3878454 c.54A>C synonymous_variant 0.42
rpoA 3878472 p.Asp12Glu missense_variant 0.39
rpoA 3878478 c.30C>G synonymous_variant 0.39
rpoA 3878490 c.18C>A synonymous_variant 0.28
rpoA 3878496 c.12A>T synonymous_variant 0.23
rpoA 3878665 c.-158A>G upstream_gene_variant 0.25
rpoA 3878672 c.-165A>T upstream_gene_variant 0.22
rpoA 3878694 c.-187A>G upstream_gene_variant 0.18
ddn 3986648 c.-196C>G upstream_gene_variant 0.18
ddn 3986665 c.-179G>C upstream_gene_variant 0.16
clpC1 4038347 c.2358G>C synonymous_variant 0.21
clpC1 4038356 c.2349T>C synonymous_variant 0.19
clpC1 4038359 c.2346A>G synonymous_variant 0.19
clpC1 4038368 c.2337T>C synonymous_variant 0.2
clpC1 4038398 c.2307G>T synonymous_variant 0.24
clpC1 4038403 c.2302T>C synonymous_variant 0.24
clpC1 4038419 c.2286T>C synonymous_variant 0.26
clpC1 4038433 c.2272C>T synonymous_variant 0.33
clpC1 4038444 p.Ala754Lys missense_variant 0.35
clpC1 4038446 c.2259T>C synonymous_variant 0.35
clpC1 4038456 p.Val750Glu missense_variant 0.33
clpC1 4038460 p.Leu749Met missense_variant 0.31
clpC1 4038461 c.2244G>T synonymous_variant 0.31
clpC1 4038474 p.Ser744Ala missense_variant 0.27
clpC1 4038486 p.Gly740Asn missense_variant 0.27
clpC1 4038489 p.Ala739Gly missense_variant 0.26
clpC1 4038498 p.Ser736Thr missense_variant 0.29
clpC1 4038530 p.Glu725Asp missense_variant 0.35
clpC1 4038533 p.Arg724Lys missense_variant 0.35
clpC1 4038596 c.2109A>G synonymous_variant 0.25
clpC1 4038623 c.2082A>G synonymous_variant 0.26
clpC1 4038640 p.Asp689Asn missense_variant 0.27
clpC1 4038658 p.Lys683Gln missense_variant 0.26
clpC1 4038661 p.Ser682Thr missense_variant 0.27
clpC1 4038662 c.2043T>C synonymous_variant 0.27
clpC1 4038683 c.2022T>C synonymous_variant 0.2
clpC1 4038695 c.2010C>G synonymous_variant 0.19
clpC1 4038698 c.2007C>T synonymous_variant 0.2
clpC1 4038701 c.2004G>C synonymous_variant 0.2
clpC1 4038704 c.2001T>C synonymous_variant 0.19
clpC1 4038707 c.1998C>G synonymous_variant 0.19
clpC1 4038713 c.1992T>C synonymous_variant 0.19
clpC1 4038755 c.1950G>C synonymous_variant 0.2
clpC1 4038773 c.1932T>C synonymous_variant 0.2
clpC1 4038790 c.1915C>T synonymous_variant 0.19
clpC1 4038860 c.1845G>A synonymous_variant 0.17
clpC1 4038908 c.1797C>G synonymous_variant 0.18
clpC1 4038914 c.1791G>C synonymous_variant 0.18
clpC1 4038989 c.1716T>C synonymous_variant 0.19
clpC1 4038997 c.1708T>C synonymous_variant 0.19
clpC1 4039022 c.1683A>G synonymous_variant 0.21
clpC1 4039043 c.1662G>C synonymous_variant 0.21
clpC1 4039064 c.1641C>T synonymous_variant 0.21
clpC1 4039085 c.1620A>G synonymous_variant 0.23
clpC1 4039090 c.1615C>T synonymous_variant 0.22
clpC1 4039118 c.1587C>G synonymous_variant 0.19
clpC1 4039133 c.1572C>G synonymous_variant 0.2
clpC1 4039142 c.1563A>G synonymous_variant 0.19
clpC1 4039145 c.1560G>C synonymous_variant 0.19
clpC1 4039166 c.1539G>A synonymous_variant 0.19
clpC1 4039169 p.Glu512Asp missense_variant 0.19
clpC1 4039172 c.1533A>G synonymous_variant 0.19
clpC1 4039178 c.1527G>C synonymous_variant 0.2
clpC1 4039183 c.1522T>C synonymous_variant 0.21
clpC1 4039187 c.1518G>C synonymous_variant 0.2
clpC1 4039190 c.1515C>G synonymous_variant 0.2
clpC1 4039208 c.1497C>G synonymous_variant 0.19
clpC1 4039226 c.1479T>C synonymous_variant 0.19
clpC1 4039274 c.1431G>C synonymous_variant 0.21
clpC1 4039283 c.1422C>T synonymous_variant 0.17
clpC1 4039292 c.1413C>T synonymous_variant 0.16
clpC1 4039409 c.1296T>C synonymous_variant 0.19
clpC1 4039412 c.1293T>G synonymous_variant 0.19
clpC1 4039415 p.Glu430Asp missense_variant 0.19
clpC1 4039430 c.1275T>C synonymous_variant 0.2
clpC1 4039442 c.1263A>G synonymous_variant 0.2
clpC1 4039454 c.1251A>G synonymous_variant 0.2
clpC1 4039466 c.1239T>C synonymous_variant 0.21
clpC1 4039469 c.1236T>C synonymous_variant 0.23
clpC1 4039481 c.1224T>G synonymous_variant 0.25
clpC1 4039484 c.1221T>C synonymous_variant 0.24
clpC1 4039517 c.1188C>G synonymous_variant 0.31
clpC1 4039532 c.1173C>T synonymous_variant 0.32
clpC1 4039541 c.1164C>G synonymous_variant 0.37
clpC1 4039556 c.1149G>C synonymous_variant 0.4
clpC1 4039570 p.Met379Leu missense_variant 0.41
clpC1 4039582 p.Thr375Ser missense_variant 0.4
clpC1 4039610 c.1095G>C synonymous_variant 0.4
clpC1 4039622 c.1083C>G synonymous_variant 0.41
clpC1 4039661 c.1044T>G synonymous_variant 0.34
clpC1 4039694 c.1011G>C synonymous_variant 0.3
clpC1 4039724 c.981A>G synonymous_variant 0.24
clpC1 4039733 c.972G>C synonymous_variant 0.26
clpC1 4039748 c.957G>C synonymous_variant 0.24
clpC1 4039751 c.954A>G synonymous_variant 0.24
clpC1 4039760 c.945T>G synonymous_variant 0.22
clpC1 4039766 c.939T>C synonymous_variant 0.18
clpC1 4039769 c.936C>G synonymous_variant 0.18
clpC1 4039778 c.927A>G synonymous_variant 0.17
clpC1 4039789 p.Ser306Thr missense_variant 0.15
clpC1 4039850 c.855T>C synonymous_variant 0.16
clpC1 4039898 c.807C>G synonymous_variant 0.18
clpC1 4039904 c.801A>G synonymous_variant 0.18
clpC1 4039979 c.726C>G synonymous_variant 0.21
clpC1 4039988 c.717C>G synonymous_variant 0.2
clpC1 4039996 p.Glu237Gln missense_variant 0.22
clpC1 4040009 c.696C>G synonymous_variant 0.2
clpC1 4040021 c.684A>C synonymous_variant 0.2
clpC1 4040024 c.681A>G synonymous_variant 0.2
clpC1 4040033 c.672G>C synonymous_variant 0.21
clpC1 4040090 c.613_615delTCTinsAGC synonymous_variant 0.2
clpC1 4040093 c.612C>G synonymous_variant 0.2
clpC1 4040108 c.597G>C synonymous_variant 0.2
clpC1 4040129 c.576C>G synonymous_variant 0.26
clpC1 4040144 c.561G>C synonymous_variant 0.24
clpC1 4040147 c.558A>G synonymous_variant 0.26
clpC1 4040162 c.543G>C synonymous_variant 0.29
clpC1 4040165 c.540G>C synonymous_variant 0.29
clpC1 4040171 c.534C>G synonymous_variant 0.25
clpC1 4040180 c.525C>G synonymous_variant 0.25
clpC1 4040201 c.504C>G synonymous_variant 0.22
clpC1 4040207 c.498T>C synonymous_variant 0.23
clpC1 4040213 c.492T>G synonymous_variant 0.22
clpC1 4040228 c.477G>C synonymous_variant 0.23
clpC1 4040231 c.474C>G synonymous_variant 0.23
clpC1 4040234 c.471C>G synonymous_variant 0.23
clpC1 4040240 c.465C>G synonymous_variant 0.23
clpC1 4040249 c.456A>G synonymous_variant 0.25
clpC1 4040267 c.438A>G synonymous_variant 0.28
clpC1 4040273 c.432T>C synonymous_variant 0.28
clpC1 4040277 c.427_428delTCinsAG synonymous_variant 0.25
clpC1 4040279 c.426C>G synonymous_variant 0.26
clpC1 4040291 c.414G>C synonymous_variant 0.24
clpC1 4040330 c.375C>G synonymous_variant 0.24
clpC1 4040335 c.370C>T synonymous_variant 0.25
clpC1 4040354 c.351A>G synonymous_variant 0.22
clpC1 4040387 c.318A>G synonymous_variant 0.21
clpC1 4040393 c.312G>C synonymous_variant 0.23
clpC1 4040411 c.294T>C synonymous_variant 0.19
clpC1 4040423 c.282A>G synonymous_variant 0.2
clpC1 4040431 c.274T>C synonymous_variant 0.2
clpC1 4040441 c.264C>G synonymous_variant 0.23
clpC1 4040450 c.255A>G synonymous_variant 0.22
clpC1 4040459 c.246C>G synonymous_variant 0.22
clpC1 4040462 c.243C>G synonymous_variant 0.22
clpC1 4040465 c.240T>C synonymous_variant 0.21
clpC1 4040471 c.234T>C synonymous_variant 0.22
clpC1 4040480 c.225T>G synonymous_variant 0.23
clpC1 4040522 c.183T>C synonymous_variant 0.2
clpC1 4040528 c.177G>C synonymous_variant 0.2
clpC1 4040531 c.174T>C synonymous_variant 0.2
clpC1 4040534 c.171A>G synonymous_variant 0.21
clpC1 4040537 c.168G>C synonymous_variant 0.21
clpC1 4040546 c.159G>C synonymous_variant 0.21
clpC1 4040551 c.154T>C synonymous_variant 0.21
clpC1 4040561 c.144A>G synonymous_variant 0.21
clpC1 4040567 c.138C>G synonymous_variant 0.21
clpC1 4040570 c.135C>G synonymous_variant 0.21
clpC1 4040573 c.132T>C synonymous_variant 0.2
clpC1 4040594 c.111G>T synonymous_variant 0.18
clpC1 4040597 c.108C>T synonymous_variant 0.18
clpC1 4040600 c.105A>G synonymous_variant 0.2
clpC1 4040603 c.102T>G synonymous_variant 0.2
clpC1 4040606 c.99T>C synonymous_variant 0.2
panD 4044120 c.162A>C synonymous_variant 0.19
panD 4044123 c.159T>C synonymous_variant 0.19
panD 4044126 c.156T>C synonymous_variant 0.19
panD 4044138 c.144T>C synonymous_variant 0.19
panD 4044150 c.132A>G synonymous_variant 0.18
embC 4240495 c.633T>C synonymous_variant 0.17
embC 4240514 p.Val218Met missense_variant 0.17
embC 4240543 c.681G>C synonymous_variant 0.19
embC 4240545 p.Pro228Gln missense_variant 0.19
embC 4240558 c.696C>G synonymous_variant 0.21
embC 4240561 c.699C>G synonymous_variant 0.21
embC 4240576 c.714A>G synonymous_variant 0.23
embC 4240578 p.Ala239Val missense_variant 0.22
embC 4240587 p.Gly242Ala missense_variant 0.22
embC 4240598 p.Val246Ile missense_variant 0.22
embC 4240610 p.Ile250Leu missense_variant 0.26
embC 4240615 c.753G>C synonymous_variant 0.26
embC 4240632 p.Met257Thr missense_variant 0.21
embC 4240645 c.783G>C synonymous_variant 0.21
embC 4240654 c.792C>G synonymous_variant 0.21
embC 4240655 p.Ala265Ser missense_variant 0.21
embC 4240670 p.Thr270Leu missense_variant 0.2
embC 4240673 p.Gly271Ser missense_variant 0.2
embC 4240678 c.816T>G synonymous_variant 0.2
embC 4240685 p.Thr275Ala missense_variant 0.21
embC 4240693 c.831T>C synonymous_variant 0.19
embC 4240694 p.Ile278Val missense_variant 0.19
embC 4240729 c.867C>G synonymous_variant 0.18
embC 4240735 c.873C>G synonymous_variant 0.2
embC 4240822 c.960C>G synonymous_variant 0.19
embC 4240831 c.969T>G synonymous_variant 0.2
embC 4240867 c.1005T>G synonymous_variant 0.29
embC 4240870 c.1008T>C synonymous_variant 0.33
embC 4240885 c.1023T>C synonymous_variant 0.33
embC 4240897 c.1035C>G synonymous_variant 0.35
embC 4240898 c.1036_1038delCTAinsTTG synonymous_variant 0.35
embC 4240911 p.Ala350Val missense_variant 0.31
embC 4240924 c.1062C>G synonymous_variant 0.33
embC 4240936 c.1074A>G synonymous_variant 0.33
embC 4240945 c.1083T>C synonymous_variant 0.33
embC 4240951 c.1089C>G synonymous_variant 0.29
embC 4240954 p.Ile364Met missense_variant 0.29
embC 4240957 c.1095C>G synonymous_variant 0.28
embC 4240960 c.1098G>C synonymous_variant 0.3
embC 4240978 c.1116G>A synonymous_variant 0.24
embC 4240979 p.Thr373Gln missense_variant 0.24
embC 4240983 p.Ser374Asn missense_variant 0.24
embC 4240987 c.1125G>C synonymous_variant 0.24
embC 4240989 p.Ala376Gly missense_variant 0.23
embC 4241005 c.1143G>C synonymous_variant 0.26
embC 4241008 c.1146G>C synonymous_variant 0.26
embC 4241011 c.1149C>A synonymous_variant 0.27
embC 4241017 c.1155T>C synonymous_variant 0.26
embC 4241023 c.1161T>C synonymous_variant 0.27
embC 4241026 c.1164C>G synonymous_variant 0.29
embC 4241038 c.1176G>C synonymous_variant 0.28
embC 4241039 p.Asp393Asn missense_variant 0.28
embC 4241047 c.1185C>G synonymous_variant 0.28
embC 4241050 c.1188T>G synonymous_variant 0.29
embC 4241071 c.1209C>G synonymous_variant 0.26
embC 4241074 c.1212G>C synonymous_variant 0.24
embC 4241104 c.1242G>A synonymous_variant 0.22
embC 4241107 c.1245G>C synonymous_variant 0.24
embC 4241116 c.1254C>G synonymous_variant 0.24
embC 4241140 c.1278A>G synonymous_variant 0.24
embC 4241141 p.Ile427Ala missense_variant 0.24
embC 4241158 c.1296T>C synonymous_variant 0.21
embC 4241161 c.1299C>G synonymous_variant 0.19
embC 4241162 c.1300T>C synonymous_variant 0.2
embC 4241230 c.1368A>G synonymous_variant 0.19
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embC 4242803 p.Val981Leu missense_variant 0.9
embA 4244298 p.Ser356Ala missense_variant 0.2
embA 4244312 c.1080T>C synonymous_variant 0.2
embA 4244324 c.1092T>G synonymous_variant 0.19
embA 4244327 c.1095T>C synonymous_variant 0.19
embA 4244337 p.Leu369Val missense_variant 0.19
embA 4244340 p.Ser370Ala missense_variant 0.19
embA 4244366 c.1134C>G synonymous_variant 0.18
embA 4244372 c.1140T>C synonymous_variant 0.18
embA 4244390 c.1158G>C synonymous_variant 0.19
embA 4244393 c.1161G>C synonymous_variant 0.18
embA 4245194 c.1962G>C synonymous_variant 0.23
embA 4245206 c.1974A>G synonymous_variant 0.21
embA 4245207 c.1975T>C synonymous_variant 0.21
embA 4245215 c.1983A>C synonymous_variant 0.21
embA 4245218 c.1986C>G synonymous_variant 0.21
embA 4245222 p.Tyr664Gln missense_variant 0.21
embA 4245233 c.2001G>C synonymous_variant 0.21
embA 4245261 p.Lys677Glu missense_variant 0.2
embA 4245281 c.2049C>G synonymous_variant 0.21
embA 4245282 p.Ile684Val missense_variant 0.21
embA 4245285 c.2053_2055delTTGinsCTC synonymous_variant 0.21
embA 4245290 c.2058C>G synonymous_variant 0.22
embA 4245293 c.2061T>G synonymous_variant 0.21
embA 4245299 c.2067A>C synonymous_variant 0.22
embA 4245315 p.Val695Thr missense_variant 0.26
embA 4245327 p.Ala699Ile missense_variant 0.26
embA 4245345 p.Met705Leu missense_variant 0.32
embA 4245355 p.Ala708Gly missense_variant 0.23
embA 4245362 c.2130G>C synonymous_variant 0.26
embA 4245368 c.2136T>C synonymous_variant 0.23
embA 4245377 c.2145T>C synonymous_variant 0.2
embA 4245650 p.Ile806Met missense_variant 0.17
embB 4245665 c.-849C>G upstream_gene_variant 0.16
embB 4245674 c.-840A>C upstream_gene_variant 0.19
embB 4245680 c.-834G>A upstream_gene_variant 0.16
embA 4245693 p.Ile821Val missense_variant 0.16
embA 4245834 p.Leu868Met missense_variant 0.15
embB 4249296 p.Ala928Val missense_variant 0.16
embB 4249316 p.Ala935Pro missense_variant 0.22
embB 4249321 c.2808A>C synonymous_variant 0.22
embB 4249322 p.Ala937Ser missense_variant 0.22
embB 4249325 p.Lys938Gln missense_variant 0.22
embB 4249330 p.Met939Ile missense_variant 0.23
embB 4249339 c.2826T>C synonymous_variant 0.27
embB 4249351 c.2838C>G synonymous_variant 0.29
embB 4249360 c.2847G>C synonymous_variant 0.32
embB 4249369 c.2856T>C synonymous_variant 0.33
embB 4249375 c.2862G>C synonymous_variant 0.32
embB 4249381 c.2868A>G synonymous_variant 0.32
embB 4249387 p.Glu958Asp missense_variant 0.32
embB 4249394 p.Ile961Val missense_variant 0.32
embB 4249399 c.2886G>C synonymous_variant 0.3
embB 4249400 p.Val963Leu missense_variant 0.3
embB 4249411 c.2898G>C synonymous_variant 0.26
embB 4249414 c.2901G>C synonymous_variant 0.25
embB 4249417 c.2904A>G synonymous_variant 0.25
embB 4249423 p.Asp970Glu missense_variant 0.27
embB 4249432 c.2919A>G synonymous_variant 0.27
embB 4249441 c.2928A>G synonymous_variant 0.21
embB 4249444 c.2931T>C synonymous_variant 0.19
embB 4249447 c.2934G>C synonymous_variant 0.19
embB 4249450 c.2937C>T synonymous_variant 0.19
embB 4249456 c.2943G>A synonymous_variant 0.17
embB 4249465 c.2952G>C synonymous_variant 0.19
embB 4249469 p.Leu986Met missense_variant 0.18
embB 4249486 c.2973T>G synonymous_variant 0.19
embB 4249487 c.2974T>C synonymous_variant 0.19
embB 4249492 c.2979C>A synonymous_variant 0.19
aftB 4268138 c.699A>C synonymous_variant 0.17
aftB 4268162 p.Gln225Glu missense_variant 0.2
aftB 4268169 p.Ala223Gly missense_variant 0.25
aftB 4268171 c.666G>C synonymous_variant 0.25
aftB 4268179 c.658T>C synonymous_variant 0.25
aftB 4268180 p.Phe219Leu missense_variant 0.25
aftB 4268186 c.651C>G synonymous_variant 0.25
aftB 4268189 c.648C>G synonymous_variant 0.25
aftB 4268194 p.Leu215Val missense_variant 0.25
aftB 4268200 p.Ile213Val missense_variant 0.33
aftB 4268207 c.630C>G synonymous_variant 0.33
aftB 4268213 c.624T>G synonymous_variant 0.33
aftB 4268219 c.618C>G synonymous_variant 0.25
aftB 4268236 c.601T>C synonymous_variant 0.23
aftB 4268295 p.Cys181Phe missense_variant 0.15
aftB 4268386 c.451T>C synonymous_variant 0.2
aftB 4268393 c.444G>C synonymous_variant 0.2
aftB 4268404 c.433T>C synonymous_variant 0.17
aftB 4268407 p.Val144Met missense_variant 0.17
aftB 4268423 c.414C>T synonymous_variant 0.18
aftB 4268426 c.411C>G synonymous_variant 0.18
aftB 4268591 c.246G>C synonymous_variant 0.29
aftB 4268597 c.240G>A synonymous_variant 0.29
aftB 4268602 p.Leu79Met missense_variant 0.29
aftB 4269042 c.-206G>C upstream_gene_variant 0.19
aftB 4269096 c.-260C>G upstream_gene_variant 0.21
aftB 4269099 c.-263G>A upstream_gene_variant 0.19
aftB 4269103 c.-268_-267delAGinsTC upstream_gene_variant 0.18
ubiA 4269107 p.Tyr243His missense_variant 0.19
ubiA 4269110 p.Gly242Arg missense_variant 0.19
aftB 4269114 c.-278C>T upstream_gene_variant 0.19
aftB 4269123 c.-287T>G upstream_gene_variant 0.2
aftB 4269131 c.-295C>T upstream_gene_variant 0.19
aftB 4269144 c.-308C>G upstream_gene_variant 0.19
ubiA 4269164 p.Leu224Met missense_variant 0.21
aftB 4269165 c.-329G>C upstream_gene_variant 0.19
aftB 4269201 c.-365A>G upstream_gene_variant 0.2
aftB 4269207 c.-371G>C upstream_gene_variant 0.19
whiB6 4338595 c.-75delG upstream_gene_variant 1.0