Rv0006 - c.1344C>G
Drug resistance types
65 Sensitive
2 RR-TB
78 HR-TB
9 MDR-TB
4 Pre-XDR-TB
0 XDR-TB
36 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.2 | 1 |
| 61 | |
| lineage4.3.3 | 2 |
| lineage4.1.2.1 | 9 |
| lineage4 | 59 |
| lineage2 | 1 |
| lineage4.9 | 27 |
| lineage2.2.1 | 10 |
| La1.8.1 | 1 |
| lineage3 | 2 |
| lineage1.2.1.2.1 | 1 |
| La1.7.1 | 1 |
| lineage4.8 | 1 |
| lineage4.1 | 2 |
| lineage3;lineage2.1 | 1 |
| lineage1.1.2 | 1 |
| lineage4.1.1.3 | 1 |
| lineage4.1.1.2 | 1 |
| lineage4.1.1 | 1 |
| lineage5.1.4 | 1 |
| lineage4.2.1 | 1 |
| lineage1.1 | 1 |
| lineage3.1 | 2 |
| lineage2.2.1.1 | 1 |
| lineage4.4.1.2 | 1 |
| lineage2.2 | 1 |
| lineage4.3.2 | 1 |
| lineage4.3.4 | 1 |
| lineage4.1.2.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 194 |
Geographic prevalence
Country level data for this variant is available for 2 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR069978 | Pre-XDR-TB | lineage2.2.2 | None | ERR8976043 | HR-TB | None | ERR9119096 | Other | lineage4.3.3 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR10809074 | Sensitive | lineage4 | None | SRR069989 | HR-TB | lineage2 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR13861261 | Sensitive | lineage4.9 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1175507 | MDR-TB | lineage4 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR13861146 | Sensitive | lineage4.9 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1175496 | HR-TB | lineage4.9 | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1175508 | Other | lineage4.9 | None | SRR13861322 | Other | lineage4.9 | None | SRR13861396 | HR-TB | lineage4.9 | None | SRR1791696 | Other | La1.8.1 | None | SRR13861439 | RR-TB | lineage4.9 | None | SRR17658565 | Other | lineage3 | None | SRR13861400 | Other | lineage4.9 | None | SRR13861500 | RR-TB | lineage4.9 | None | SRR13861646 | Other | lineage4.9 | None | SRR14801749 | Sensitive | None | SRR1510066 | Other | lineage1.2.1.2.1 | None | SRR1640750 | HR-TB | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR24256360 | Sensitive | lineage4.8 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR12708416 | Sensitive | lineage4.1 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR3675472 | Sensitive | lineage4.9 | None | ERR176778 | HR-TB | None | ERR176779 | HR-TB | None | SRR6325445 | HR-TB | None | SRR3675482 | HR-TB | None | ERR1035239 | HR-TB | None | ERR161033 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3675486 | HR-TB | None | SRR3675210 | Sensitive | lineage4.9 | None | SRR3675209 | Sensitive | lineage4.9 | None | ERR3275450 | Other | lineage4 | None | SRR3675265 | Other | lineage4 | None | SRR3675229 | Other | lineage4 | None | ERR181824 | HR-TB | lineage4 | None | SRR3675247 | Other | lineage4.9 | None | ERR181887 | HR-TB | None | SRR3675279 | Other | None | SRR3675292 | Sensitive | lineage4 | None | SRR3675455 | Sensitive | lineage4 | None | SRR3675312 | HR-TB | lineage4 | None | SRR3675387 | Sensitive | None | ERR176651 | HR-TB | None | SRR3675577 | Sensitive | lineage4.9 | None | SRR3675510 | Other | None | ERR4816009 | Other | lineage1.1.2 | None | SRR3675547 | Other | lineage4.9 | None | SRR3675545 | HR-TB | None | ERR212125 | HR-TB | lineage4 | None | SRR3675522 | Other | None | SRR3675558 | HR-TB | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR212138 | HR-TB | lineage4 | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR4816656 | HR-TB | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR2229143 | Other | lineage4.1.1 | None | ERR2446382 | Other | lineage4 | None | ERR4818929 | HR-TB | None | ERR2513283 | Other | lineage5.1.4 | None | SRR5341396 | Other | lineage4 | None | SRR5341437 | Sensitive | lineage4.9 | None | SRR5341296 | Sensitive | lineage4.9 | None | ERR2514692 | Other | None | SRR6045706 | Sensitive | lineage4 | None | SRR5341323 | Sensitive | lineage4 | None | ERR2446563 | Other | lineage2.2.1 | nl | ERR2517475 | Other | lineage4 | None | ERR4821053 | Other | lineage3 | None | ERR2693239 | HR-TB | None | SRR6045503 | HR-TB | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR6045526 | HR-TB | None | ERR278594 | HR-TB | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6045952 | HR-TB | None | SRR6046245 | Other | lineage4.9 | None | SRR6045371 | Sensitive | lineage4.2.1 | None | ERR3077978 | Other | lineage1.1 | None | SRR6325444 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6046897 | Sensitive | lineage4 | None | SRR6325448 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6046802 | Other | lineage4 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6325442 | HR-TB | None | ERR294248 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | ERR4832067 | MDR-TB | lineage2.2.1.1 | None | ERR4831638 | Sensitive | None | ERR323036 | HR-TB | None | ERR5311081 | HR-TB | None | ERR502943 | HR-TB | None | ERR5311099 | HR-TB | None | SRR7796666 | Pre-XDR-TB | lineage2.2.1 | None | ERR323038 | HR-TB | None | ERR5311090 | HR-TB | None | ERR323041 | HR-TB | None | ERR323045 | HR-TB | None | ERR323055 | HR-TB | None | ERR323063 | HR-TB | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323108 | HR-TB | lineage4 | None | ERR1063857 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1063862 | HR-TB | None | ERR1063859 | HR-TB | None | ERR1063858 | HR-TB | None | ERR3445501 | HR-TB | None | ERR3283017 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3445502 | HR-TB | lineage4 | None | ERR3445503 | HR-TB | None | ERR349266 | Sensitive | lineage4.9 | None | ERR3468544 | HR-TB | None | ERR349264 | Sensitive | lineage4 | None | ERR349298 | Sensitive | lineage4 | None | ERR349330 | Sensitive | lineage4 | None | ERR349296 | Sensitive | lineage4 | None | ERR349299 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363426 | Sensitive | lineage4 | None | ERR363421 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR369159 | Sensitive | lineage4 | None | ERR369158 | Sensitive | lineage4 | None | ERR369162 | Sensitive | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR400320 | Sensitive | lineage4 | None | ERR373945 | HR-TB | lineage4 | None | ERR3797016 | HR-TB | None | ERR369163 | Sensitive | lineage4 | None | ERR373946 | Sensitive | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR3797083 | HR-TB | None | ERR4188350 | HR-TB | None | ERR400326 | Sensitive | lineage4 | None | ERR400336 | Sensitive | lineage4 | None | ERR400345 | Other | lineage4 | None | ERR4799547 | Sensitive | lineage2.2.1 | None | ERR4796929 | Sensitive | lineage4 | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR473332 | Other | lineage4 | None | ERR4769521 | HR-TB | None | ERR4797313 | HR-TB | None | ERR4798431 | HR-TB | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4812155 | Sensitive | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR4811030 | Sensitive | None | ERR5908228 | Other | lineage4.3.3 | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR6358837 | HR-TB | None | ERR6866807 | HR-TB | lineage4 | None | ERR736875 | HR-TB | lineage4 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736839 | Other | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None |
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