Rv3596c - c.2358G>C


Drug resistance types
23 Sensitive 19 RR-TB 88 HR-TB 45 MDR-TB 4 Pre-XDR-TB 3 XDR-TB 64 Other
lineage Counts
lineage Count
lineage1.2.2.2 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 1
lineage4.9 60
lineage4.1.1.3 3
La1.7.X-unk4;lineage4.9 1
M.canetti;lineage2.1;lineage4.9 24
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 4
La3;M.canetti;lineage4.9 2
lineage2.2 3
lineage4.6.3;lineage4.9 2
La3;M.canetti;lineage2.1;lineage4.9 12
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
M.canetti;lineage4.9 4
lineage4.1.2.1 11
La1.6;La3;lineage4.9 2
M.canetti;lineage2.2 3
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 4
lineage4.9;lineage9 2
lineage2.1;lineage4.9 5
La1;lineage2;lineage4.9 1
M.canetti;lineage2.2.2;lineage6.2 2
lineage4.6.2.2 2
La1.6;La3;M.canetti;lineage2.1;lineage4.9 1
lineage4.3.4.2.1 2
La1;lineage4.9 2
La1.7.1;La1.7.X-unk4;lineage7 1
M.canetti;lineage2.1;lineage4.9;lineage6.3 6
M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 1
lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 1
lineage4.3.3 2
La3;M.canetti;lineage3.1 1
lineage2.1;lineage4.1.1.1;lineage6.3 2
lineage2.2.1 6
lineage4.3.2;lineage4.9 1
La1.7;M.canetti;lineage4.9 1
La1.7.1 2
lineage4.4.1.1 2
M.canetti;lineage4.1.1.3;lineage6.3;lineage8 1
3
M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 1
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 2
La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 1
lineage3.1;lineage9 1
lineage2.1;lineage4.9;lineage6.3 3
M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 1
La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 1
La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 1
M.canetti;lineage2.1;lineage4 1
La1.7;lineage4.9;lineage7 2
La3;M.canetti;lineage2.1;lineage3.1 1
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
lineage3 3
La2;lineage4.9 1
lineage1.1.2;lineage4 1
La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
lineage3.1.2.2 1
M.canetti;lineage1 1
La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 1
lineage4.9;lineage6.3 2
M.canetti;lineage2.1;lineage4.1.2.1 1
La2;lineage4.9;lineage9 1
lineage2.1;lineage4.9;lineage6.3;lineage8 1
lineage4.8 1
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 4
lineage4.5 1
M.canetti;lineage2.1;lineage6.3 1
lineage4.1.2.1.1 1
La1.7;lineage3;lineage4.9;lineage7 1
lineage2.1;lineage2.2;lineage6.3 1
La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 1
M.canetti;lineage2.1;lineage3 1
M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 1
La3;lineage4.9 2
lineage1.2.1.2 1
La1.8.1 1
lineage2.1;lineage4.3.2 1
La1.6;La3;lineage4.6.4;lineage4.9 1
La3;lineage4.3.4 1
M.canetti;lineage4.3.1;lineage4.9 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.9 2
lineage4.3.4.1 1
La1;lineage4.1.2 1
lineage1.2.1.2.1 1
M.canetti;lineage2.1;lineage4.3.1;lineage4.9 1
lineage1.1 1
M.canetti;lineage2.1 1
La3;M.canetti;lineage4.8;lineage4.9 1
lineage3.1.2.1;lineage3.1.2.2 1
spoligotype Counts
spoligotype Count
None 246
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR4797285 MDR-TB lineage1.2.2.2 None
ERR3797044 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 None
ERR502511 Sensitive lineage4.9 None
ERR550636 MDR-TB lineage4.1.1.3 None
SRR3675520 Other La1.7.X-unk4;lineage4.9 None
ERR5311081 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR2693245 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR5162090 RR-TB lineage4.9 None
ERR3797083 RR-TB lineage4.9 None
ERR473277 HR-TB La3;M.canetti;lineage4.9 None
SRR20969708 HR-TB lineage2.2 None
SRR6046577 Other lineage4.6.3;lineage4.9 None
ERR5311101 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR323036 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR124642 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
ERR3797028 HR-TB M.canetti;lineage4.9 None
SRR1163221 MDR-TB lineage4.1.2.1 None
SRR1167055 Other lineage4.1.2.1 None
ERR126608 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3797061 Other La1.6;La3;lineage4.9 None
ERR323115 Sensitive lineage4.9 None
ERR1873396 Pre-XDR-TB M.canetti;lineage2.2 None
SRR3675486 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR5341384 HR-TB lineage4.9 None
SRR1174897 MDR-TB lineage4.9;lineage9 None
ERR3468544 Other lineage2.1;lineage4.9 None
ERR124636 Sensitive lineage4.9 None
ERR067699 Sensitive La1;lineage2;lineage4.9 None
ERR5917710 Other lineage4.1.2.1 None
SRR5341470 MDR-TB lineage4.9;lineage9 None
ERR1873492 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR4872119 MDR-TB lineage4.6.2.2 None
SRR5341461 HR-TB lineage4.9 None
ERR3283020 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.9 None
SRR6044942 HR-TB lineage4.9 None
ERR2229143 RR-TB lineage4.9 None
ERR3283032 Other lineage4.9 None
ERR2693230 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR6045948 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR245794 HR-TB lineage4.3.4.2.1 None
ERR1035122 Sensitive lineage4.9 None
ERR133825 HR-TB La1;lineage4.9 None
ERR176766 HR-TB lineage2.1;lineage4.9 None
ERR3445501 HR-TB La1.7.1;La1.7.X-unk4;lineage7 None
SRR5341308 Sensitive lineage4.9 None
ERR5311102 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR5311096 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR3283017 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 None
SRR13861332 Other lineage4.9 None
SRR1183111 HR-TB lineage4.9 None
ERR779852 Sensitive lineage4.9 None
ERR6358991 HR-TB lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 None
ERR5908228 RR-TB lineage4.3.3 None
ERR4796929 Sensitive lineage4.9 None
SRR5341299 HR-TB lineage4.9 None
ERR323054 MDR-TB La3;M.canetti;lineage3.1 None
SRR6045233 Other M.canetti;lineage4.9 None
ERR3797014 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR386953 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR11662690 HR-TB lineage4.9 None
SRR1165584 Other lineage4.1.2.1 None
SRR20970016 Other lineage2.2 None
SRR26159047 Other lineage4.6.3;lineage4.9 None
SRR6325442 HR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
ERR473314 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR2509673 Other lineage2.2.1 None
SRR6044815 Other lineage4.9 None
SRR3675487 Other M.canetti;lineage4.9 None
SRR29231479 RR-TB lineage4.9 None
ERR736865 HR-TB lineage4.3.2;lineage4.9 None
ERR736835 HR-TB La1.7;M.canetti;lineage4.9 None
SRR7240492 HR-TB La1.7.1 None
SRR1173453 Other lineage4.4.1.1 None
SRR3675558 HR-TB M.canetti;lineage4.1.1.3;lineage6.3;lineage8 None
SRR1640750 Other None
SRR3675568 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 None
ERR3275196 Other lineage2.2.1 nl
ERR323060 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR5311098 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR6358837 HR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR3283042 Other lineage4.9 None
ERR1034652 Other La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 None
SRR1180137 Other lineage2.2.1 None
ERR176658 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR25827418 XDR-TB lineage3.1;lineage9 None
ERR323066 Sensitive lineage4.9 None
SRR3675508 Other lineage2.1;lineage4.9;lineage6.3 None
ERR3468607 Other lineage4.9 None
ERR11252599 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 None
SRR1165506 Other lineage4.1.2.1 None
ERR736872 HR-TB lineage4.9 None
ERR11252736 Other lineage4.9 None
ERR3283024 Other La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 None
ERR2693257 Other La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 None
ERR323058 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR2693242 RR-TB lineage2.1;lineage4.9 None
ERR2693239 RR-TB M.canetti;lineage2.1;lineage4 None
SRR13861224 Sensitive lineage4.9 None
SRR3675506 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR5311083 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR5341313 Sensitive La1.7;lineage4.9;lineage7 None
SRR1183049 RR-TB lineage2.2 None
ERR323034 MDR-TB La3;M.canetti;lineage2.1;lineage3.1 None
ERR124651 MDR-TB La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
ERR4821053 RR-TB lineage3 None
ERR5311100 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR323039 HR-TB La2;lineage4.9 None
SRR5341341 Pre-XDR-TB lineage2.2.1 None
SRR1162740 Other lineage4.1.2.1 None
SRR6325445 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR17658565 Pre-XDR-TB lineage3 None
SRR3675269 RR-TB lineage4.9 None
ERR323107 Sensitive lineage4.9 None
ERR108125 RR-TB lineage4.9 None
ERR4816551 HR-TB lineage4.1.1.3 None
ERR736839 HR-TB M.canetti;lineage4.9 None
ERR1063883 HR-TB lineage4.9 None
ERR4817692 HR-TB lineage1.1.2;lineage4 None
ERR4799478 Pre-XDR-TB lineage2.2.1 None
ERR9119525 MDR-TB lineage4.6.2.2 None
ERR5311091 Other La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR4798648 MDR-TB lineage3.1.2.2 None
SRR15014655 Other M.canetti;lineage1 None
SRR10808805 Other La1;lineage4.9 None
SRR6046644 HR-TB La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 None
SRR6458421 MDR-TB lineage2.2.1 None
ERR212121 HR-TB lineage4.9;lineage6.3 None
ERR1023295 MDR-TB M.canetti;lineage2.1;lineage4.1.2.1 None
ERR278594 HR-TB lineage2.1;lineage4.9 None
ERR323053 MDR-TB La2;lineage4.9;lineage9 None
SRR3675515 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675464 HR-TB lineage2.1;lineage4.9;lineage6.3;lineage8 None
ERR9892000 Sensitive lineage4.8 None
ERR990545 Other lineage3 None
SRR6045290 RR-TB M.canetti;lineage2.1;lineage4.9 None
ERR126618 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR13423544 Other lineage4.5 None
SRR6325444 MDR-TB M.canetti;lineage2.1;lineage6.3 None
ERR760733 MDR-TB lineage4.1.2.1.1 None
SRR5341453 Other lineage4.9 None
SRR1173767 MDR-TB lineage4.4.1.1 None
ERR323055 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SAMN02414850 Other lineage4.1.2.1 None
ERR736834 Sensitive lineage4.9 None
SRR5341315 Other La1.7;lineage3;lineage4.9;lineage7 None
ERR8976043 HR-TB lineage2.1;lineage2.2;lineage6.3 None
SRR3675234 Other La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR5311090 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR1873393 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4814536 MDR-TB M.canetti;lineage2.1;lineage3 None
SRR6044890 Sensitive lineage4.9 None
SRR5341469 HR-TB lineage4.9 None
ERR9119096 RR-TB lineage4.3.3 None
SRR3675383 Sensitive lineage4.9 None
SRR5341387 Other lineage4.9 None
ERR6359045 Other M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 None
SRR10808730 Other lineage4.9 None
ERR124652 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR1162864 Other lineage4.1.2.1 None
ERR7911670 XDR-TB M.canetti;lineage2.2 None
SRR28119827 Other La3;lineage4.9 None
SRR12006550 Sensitive lineage1.2.1.2 None
SRR3675243 Other lineage4.9 None
SRR3675545 Other La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR2693252 Sensitive lineage4.9 None
ERR323044 HR-TB lineage4.3.4.2.1 None
SRR23961558 Other lineage2.1;lineage4.9;lineage6.3 None
ERR323062 Sensitive lineage4.9 None
ERR3797023 HR-TB La1.8.1 None
SRR6045952 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR181744 HR-TB La3;lineage4.9 None
ERR1035239 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675507 Other lineage4.9 None
ERR323063 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR6046514 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR294248 MDR-TB lineage2.1;lineage4.9 None
ERR4831546 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR772255 MDR-TB lineage2.1;lineage4.3.2 None
ERR3797017 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR1792478 HR-TB La1.7.1 None
SRR5341432 Sensitive La1.7;lineage4.9;lineage7 None
ERR702405 Sensitive lineage4.9 None
ERR2693231 Other La1.6;La3;lineage4.6.4;lineage4.9 None
SRR1166821 Other lineage4.1.2.1 None
ERR323040 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR5341300 HR-TB lineage4.9 None
SRR14782054 Other lineage4.9 None
ERR502510 Sensitive lineage4.9 None
ERR2693254 Other La1.6;La3;lineage4.9 None
ERR5311078 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR14801749 HR-TB lineage4.9 None
ERR323064 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR161033 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SAMEA2533358 MDR-TB lineage4.1.1.3 None
ERR161039 HR-TB La3;lineage4.3.4 None
ERR9119138 RR-TB M.canetti;lineage4.3.1;lineage4.9 None
ERR3283016 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR6325447 MDR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
ERR5311082 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
SRR3675481 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR3675561 Other M.canetti;lineage2.1;lineage4.9 None
ERR751326 Other lineage4.9 None
ERR5311089 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4188350 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675518 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR13583478 HR-TB lineage4.3.4.1 None
SRR12416842 HR-TB lineage4.9 None
ERR5311099 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR14782405 HR-TB lineage4.9 None
SRR3675246 Other lineage4.9 None
SRR3675450 HR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR13861399 Other lineage4.9 None
SRR9970978 Sensitive La1;lineage4.1.2 None
ERR702404 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR176751 Other lineage4.9 None
SRR3675494 RR-TB lineage4.9 None
SRR1165423 RR-TB lineage4.1.2.1 None
SRR1510066 RR-TB lineage1.2.1.2.1 None
SRR3675320 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9 None
ERR3283018 HR-TB lineage4.9 None
ERR323033 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3077978 RR-TB lineage1.1 None
ERR6359082 Other lineage4.9 None
ERR323041 HR-TB M.canetti;lineage2.1 None
ERR323038 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR3675554 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR9786843 Other None
SRR6325448 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR987722 MDR-TB None
ERR126600 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR1180226 HR-TB lineage4.9 None
ERR323047 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4831545 XDR-TB M.canetti;lineage2.2 None
SRR3675444 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR502524 HR-TB lineage4.9;lineage6.3 None
ERR3797016 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR29096410 Other lineage4.9 None
ERR038268 HR-TB La3;M.canetti;lineage4.8;lineage4.9 None
ERR9786986 HR-TB lineage4.1.2.1 None
ERR137286 Other lineage4.9 None
ERR4188342 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR2693229 RR-TB La3;M.canetti;lineage4.9 None
SRR29097026 Other lineage4.9 None
SRR3675322 HR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
SRR5341373 Other lineage4.9 None
ERR987729 HR-TB lineage3.1.2.1;lineage3.1.2.2 None