Rv3596c - c.2358G>C
Drug resistance types
46 Sensitive
3 RR-TB
91 HR-TB
8 MDR-TB
9 Pre-XDR-TB
0 XDR-TB
64 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1 | 1 |
| 85 | |
| lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
| lineage4.3.4 | 1 |
| lineage4 | 44 |
| lineage3;lineage2.1 | 1 |
| lineage2.1 | 1 |
| lineage4;lineage1.1.2 | 1 |
| lineage4.1.1.3 | 1 |
| lineage2.2.1 | 10 |
| lineage4.3.4.2.1 | 2 |
| lineage4.9;lineage2.1 | 1 |
| lineage3 | 3 |
| lineage4.9 | 18 |
| lineage4.1.2.1 | 12 |
| lineage2.2 | 6 |
| lineage1.1 | 1 |
| lineage4.6.2.2 | 2 |
| La2 | 1 |
| lineage3.1 | 2 |
| lineage4.1.2 | 2 |
| La1.8.1 | 1 |
| lineage1.2.2.2 | 1 |
| lineage3.1.2 | 1 |
| lineage4.3.3 | 2 |
| lineage4.1.2.1.1 | 1 |
| lineage4.3.2 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.8 | 1 |
| lineage3.1.2.2;lineage3.1.2.1 | 1 |
| lineage2.2.2 | 2 |
| lineage2 | 1 |
| lineage2.2.1.2 | 2 |
| lineage4.4.1.1 | 2 |
| lineage4.3.4.1 | 1 |
| lineage1.2.1.2 | 1 |
| lineage4.5 | 1 |
| lineage1.2.1.2.1 | 1 |
| lineage9;lineage3.1 | 1 |
| La1.7.1 | 1 |
| lineage4.9;lineage4.6.3 | 1 |
| lineage6.3;lineage4.9;lineage2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 221 |
Geographic prevalence
Country level data for this variant is available for 2 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3675464 | HR-TB | lineage4.1 | None | SRR3675482 | HR-TB | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | SRR3675270 | HR-TB | None | ERR161039 | Sensitive | lineage4.3.4 | None | SRR3675234 | Other | None | SRR3675246 | Sensitive | lineage4 | None | ERR161033 | HR-TB | None | SRR3675486 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | ERR181744 | HR-TB | None | ERR702405 | Sensitive | lineage2.1 | None | ERR212121 | HR-TB | None | SRR3675383 | HR-TB | None | ERR176740 | HR-TB | None | SRR3675545 | HR-TB | None | SRR3675558 | HR-TB | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | SRR5341387 | Other | lineage4 | None | ERR2509673 | Other | lineage2.2.1 | None | SRR5341366 | Sensitive | lineage4 | None | SRR5341373 | HR-TB | lineage4 | None | SRR5341461 | Sensitive | lineage4 | None | SRR5341432 | HR-TB | lineage4 | None | SRR5341396 | Other | lineage4 | None | SRR5341400 | HR-TB | lineage4 | None | SRR5341425 | Other | lineage4 | None | SRR5341303 | RR-TB | lineage4 | None | SRR5341300 | Other | lineage4 | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341455 | Sensitive | lineage4 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341308 | Sensitive | lineage4 | None | SRR5341313 | HR-TB | None | SRR5341467 | Other | lineage4 | None | SRR5341315 | Sensitive | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR2446563 | Other | lineage2.2.1 | nl | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341470 | HR-TB | None | ERR2693231 | Other | None | SRR5341469 | Other | lineage4 | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | ERR4821053 | Other | lineage3 | None | SRR6045892 | Sensitive | None | ERR2693230 | Other | None | ERR4821655 | Sensitive | lineage4 | None | ERR2693239 | HR-TB | None | ERR2693254 | Other | None | ERR2693257 | Other | None | SRR5535933 | HR-TB | None | SRR6046046 | Other | None | SRR6045952 | HR-TB | None | SRR6045053 | Other | None | SRR6044890 | Other | lineage4.9 | None | SRR6045233 | HR-TB | None | ERR278594 | HR-TB | None | ERR2693232 | Other | lineage4.9 | None | SRR6325442 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6046644 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6511621 | HR-TB | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR323036 | HR-TB | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR3077978 | Other | lineage1.1 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR502524 | HR-TB | La2 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR502510 | Sensitive | lineage4 | None | ERR294248 | HR-TB | None | SRR7535082 | Sensitive | lineage4 | None | ERR5311090 | HR-TB | None | SRR9970980 | Other | lineage4.1.2 | None | ERR5311099 | HR-TB | None | ERR5311081 | HR-TB | None | ERR323041 | HR-TB | None | SRR9970978 | Sensitive | lineage4.1.2 | None | ERR323038 | HR-TB | None | ERR323039 | HR-TB | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323055 | HR-TB | None | ERR323107 | Other | lineage4 | None | ERR323066 | Sensitive | lineage4 | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323063 | HR-TB | None | ERR323053 | HR-TB | None | ERR1035122 | Sensitive | None | ERR323085 | Sensitive | lineage4 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1034652 | Other | None | ERR067699 | HR-TB | lineage4 | None | ERR1063883 | Sensitive | lineage4 | None | ERR1063896 | Sensitive | None | ERR133825 | Sensitive | lineage4 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR3283032 | HR-TB | None | ERR137286 | Sensitive | lineage4 | None | ERR323115 | Sensitive | lineage4 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283024 | Other | None | ERR3283017 | HR-TB | None | ERR3283058 | Other | lineage4.9 | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3445501 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3797014 | Other | None | ERR3468544 | HR-TB | None | ERR3797016 | HR-TB | None | ERR3797017 | Other | None | ERR3797043 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797044 | Other | None | ERR3797061 | Other | None | ERR3797083 | HR-TB | None | ERR3797082 | Other | lineage4.9 | None | ERR4188350 | HR-TB | None | ERR4024991 | Other | None | ERR4769452 | HR-TB | None | ERR4796254 | Sensitive | lineage4 | None | ERR4769450 | HR-TB | None | ERR4796929 | Sensitive | lineage4 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4799025 | Pre-XDR-TB | None | ERR4797264 | Sensitive | None | ERR4797285 | MDR-TB | lineage1.2.2.2 | None | ERR4798099 | Other | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4799378 | Sensitive | lineage4 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR5908228 | Other | lineage4.3.3 | None | ERR6358837 | HR-TB | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR736835 | HR-TB | None | ERR6866022 | Other | None | ERR6866547 | Sensitive | lineage4 | None | ERR736834 | Sensitive | lineage4 | None | ERR6358979 | Other | None | ERR6358991 | HR-TB | None | ERR6359045 | HR-TB | None | ERR702404 | HR-TB | None | ERR736856 | HR-TB | lineage4 | None | ERR736839 | Other | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR736872 | Sensitive | lineage4 | None | ERR736865 | HR-TB | None | ERR751326 | Sensitive | lineage4 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR8976043 | HR-TB | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR9119096 | Other | lineage4.3.3 | None | ERR9786843 | Other | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR987722 | HR-TB | None | ERR9892000 | Sensitive | lineage4.8 | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | SRR069978 | Pre-XDR-TB | lineage2.2.2 | None | ERR990545 | Other | lineage3 | None | SRR069989 | HR-TB | lineage2 | None | SRR069981 | HR-TB | lineage2.2.2 | None | SRR10809074 | Sensitive | lineage4 | None | SRR10808399 | Sensitive | lineage4 | None | SRR10808805 | Sensitive | None | SRR1165423 | Other | lineage4.1.2.1 | None | SRR1158918 | Sensitive | lineage4 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR1173568 | Other | lineage4.9 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR1172310 | HR-TB | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1174897 | HR-TB | None | SRR1173777 | Other | lineage4 | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1180996 | HR-TB | lineage4 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR12006550 | Other | lineage1.2.1.2 | None | SRR1183049 | Other | lineage2.2 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR13423544 | Other | lineage4.5 | None | SRR13861224 | Sensitive | lineage4.9 | None | SRR13837951 | Sensitive | lineage4.9 | None | SRR13861332 | Other | lineage4.9 | None | SRR13861251 | RR-TB | lineage4.9 | None | SRR13861324 | Other | lineage4.9 | None | SRR13861418 | HR-TB | lineage4.9 | None | SRR13861399 | Other | lineage4.9 | None | SRR17658565 | Other | lineage3 | None | SRR13861573 | Other | lineage4.9 | None | SRR14782405 | HR-TB | None | SRR1640750 | HR-TB | None | SRR13861629 | RR-TB | lineage4.9 | None | SRR13861646 | Other | lineage4.9 | None | SRR14801749 | Sensitive | None | SRR1510066 | Other | lineage1.2.1.2.1 | None | SRR25827418 | Pre-XDR-TB | lineage9;lineage3.1 | None | SRR20970016 | Other | lineage2.2 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR26159047 | Other | lineage4.9;lineage4.6.3 | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | ERR176751 | HR-TB | None |
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