Run ID: ERR4797285
Sample name:
Date: 01-04-2023 07:32:26
Number of reads: 3495294
Percentage reads mapped: 87.7
Strain: lineage1.2.2.2
Drug-resistance: MDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage1 | Indo-Oceanic | EAI | RD239 | 0.96 |
lineage1.2.2 | Indo-Oceanic | EAI1 | RD239 | 0.98 |
lineage6.2.1 | West-Africa 2 | AFRI_1 | RD702 | 0.07 |
lineage1.2.2.2 | Indo-Oceanic | NA | RD239 | 0.99 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761155 | p.Ser450Leu | missense_variant | 0.89 | rifampicin |
fabG1 | 1673432 | c.-8T>C | upstream_gene_variant | 1.0 | isoniazid, ethionamide |
inhA | 1674481 | p.Ser94Ala | missense_variant | 0.82 | isoniazid, ethionamide |
embB | 4247730 | p.Gly406Ala | missense_variant | 1.0 | ethambutol |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5075 | c.-165C>T | upstream_gene_variant | 1.0 |
gyrB | 6112 | p.Met291Ile | missense_variant | 0.99 |
gyrA | 7268 | c.-34C>T | upstream_gene_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8452 | p.Ala384Val | missense_variant | 0.9 |
gyrA | 9143 | c.1842T>C | synonymous_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
gyrA | 9626 | c.2325T>C | synonymous_variant | 0.14 |
gyrA | 9630 | p.Val777Ile | missense_variant | 0.15 |
gyrA | 9635 | c.2334T>C | synonymous_variant | 0.15 |
gyrA | 9641 | c.2340C>G | synonymous_variant | 0.16 |
gyrA | 9644 | c.2343T>C | synonymous_variant | 0.17 |
gyrA | 9650 | c.2349G>C | synonymous_variant | 0.16 |
gyrA | 9656 | c.2355C>G | synonymous_variant | 0.17 |
gyrA | 9665 | c.2364A>T | synonymous_variant | 0.17 |
gyrA | 9674 | c.2373T>C | synonymous_variant | 0.16 |
gyrA | 9686 | c.2385A>G | synonymous_variant | 0.14 |
gyrA | 9698 | c.2397G>A | synonymous_variant | 0.14 |
fgd1 | 491145 | c.363C>G | synonymous_variant | 0.14 |
fgd1 | 491151 | c.369G>A | synonymous_variant | 0.15 |
fgd1 | 491166 | c.384G>A | synonymous_variant | 0.14 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.24 |
rpoB | 760193 | c.387C>G | synonymous_variant | 0.15 |
rpoB | 760196 | c.390C>G | synonymous_variant | 0.15 |
rpoB | 760223 | c.417T>C | synonymous_variant | 0.17 |
rpoB | 760235 | c.429T>C | synonymous_variant | 0.18 |
rpoB | 760283 | c.477G>C | synonymous_variant | 0.18 |
rpoB | 760298 | c.492G>C | synonymous_variant | 0.19 |
rpoB | 760307 | c.501T>G | synonymous_variant | 0.15 |
rpoB | 760310 | c.504G>C | synonymous_variant | 0.15 |
rpoB | 760313 | c.507G>C | synonymous_variant | 0.15 |
rpoB | 760331 | c.525G>C | synonymous_variant | 0.18 |
rpoB | 760340 | c.534G>C | synonymous_variant | 0.19 |
rpoB | 760361 | c.555T>C | synonymous_variant | 0.22 |
rpoB | 760376 | p.Asp190Glu | missense_variant | 0.24 |
rpoB | 760406 | c.600G>C | synonymous_variant | 0.25 |
rpoB | 760418 | c.612G>C | synonymous_variant | 0.2 |
rpoB | 760424 | c.618C>G | synonymous_variant | 0.21 |
rpoB | 760430 | c.624T>C | synonymous_variant | 0.18 |
rpoB | 760457 | c.651C>T | synonymous_variant | 0.18 |
rpoB | 760475 | c.669A>G | synonymous_variant | 0.17 |
rpoB | 760481 | c.675G>C | synonymous_variant | 0.18 |
rpoB | 760484 | c.678A>G | synonymous_variant | 0.18 |
rpoB | 760563 | c.757C>A | synonymous_variant | 0.14 |
rpoB | 760646 | c.840C>G | synonymous_variant | 0.14 |
rpoB | 760718 | c.912C>G | synonymous_variant | 0.19 |
rpoB | 760721 | c.915C>G | synonymous_variant | 0.16 |
rpoB | 760724 | c.918T>C | synonymous_variant | 0.17 |
rpoB | 760730 | c.924T>C | synonymous_variant | 0.17 |
rpoB | 760757 | c.951T>C | synonymous_variant | 0.16 |
rpoB | 760759 | p.Val318Ala | missense_variant | 0.16 |
rpoB | 760763 | c.957C>T | synonymous_variant | 0.14 |
rpoB | 760769 | c.963C>G | synonymous_variant | 0.14 |
rpoB | 760775 | c.969G>C | synonymous_variant | 0.14 |
rpoB | 760776 | c.970_972delTCGinsAGC | synonymous_variant | 0.15 |
rpoB | 760805 | c.999G>C | synonymous_variant | 0.15 |
rpoB | 760817 | c.1011A>G | synonymous_variant | 0.15 |
rpoB | 760820 | c.1014T>C | synonymous_variant | 0.16 |
rpoB | 760830 | c.1024T>C | synonymous_variant | 0.17 |
rpoB | 760841 | c.1035T>G | synonymous_variant | 0.15 |
rpoB | 760850 | c.1044G>C | synonymous_variant | 0.16 |
rpoB | 761606 | c.1800C>G | synonymous_variant | 0.13 |
rpoB | 761636 | c.1830G>T | synonymous_variant | 0.15 |
rpoB | 761645 | c.1839C>G | synonymous_variant | 0.15 |
rpoB | 761648 | c.1842T>C | synonymous_variant | 0.14 |
rpoB | 761657 | c.1851C>G | synonymous_variant | 0.15 |
rpoB | 761669 | c.1863C>T | synonymous_variant | 0.17 |
rpoB | 761675 | c.1869G>C | synonymous_variant | 0.18 |
rpoB | 761682 | c.1876C>T | synonymous_variant | 0.19 |
rpoB | 761687 | c.1881C>T | synonymous_variant | 0.18 |
rpoB | 761723 | c.1917A>G | synonymous_variant | 0.16 |
rpoB | 761726 | c.1920A>G | synonymous_variant | 0.16 |
rpoB | 761765 | c.1959T>G | synonymous_variant | 0.14 |
rpoB | 761768 | c.1962G>C | synonymous_variant | 0.13 |
rpoB | 762296 | c.2490G>A | synonymous_variant | 0.14 |
rpoB | 762314 | c.2508C>T | synonymous_variant | 0.16 |
rpoB | 762317 | c.2511A>G | synonymous_variant | 0.16 |
rpoB | 762338 | c.2532T>C | synonymous_variant | 0.17 |
rpoB | 762347 | c.2541T>C | synonymous_variant | 0.17 |
rpoB | 762350 | c.2544C>G | synonymous_variant | 0.15 |
rpoB | 762353 | c.2547C>G | synonymous_variant | 0.15 |
rpoB | 762362 | p.Glu852Asp | missense_variant | 0.14 |
rpoC | 762434 | c.-936T>C | upstream_gene_variant | 0.14 |
rpoB | 762813 | p.Met1003Val | missense_variant | 0.16 |
rpoC | 762818 | c.-552C>G | upstream_gene_variant | 0.16 |
rpoC | 762857 | c.-513C>G | upstream_gene_variant | 0.14 |
rpoC | 762894 | c.-476C>T | upstream_gene_variant | 0.17 |
rpoC | 762902 | c.-468C>T | upstream_gene_variant | 0.18 |
rpoC | 762929 | c.-441G>C | upstream_gene_variant | 0.16 |
rpoC | 762962 | c.-408C>T | upstream_gene_variant | 0.23 |
rpoC | 762995 | c.-375G>T | upstream_gene_variant | 0.26 |
rpoC | 763031 | c.-339T>G | upstream_gene_variant | 1.0 |
rpoC | 763034 | c.-336C>G | upstream_gene_variant | 0.23 |
rpoC | 763040 | c.-330C>G | upstream_gene_variant | 0.18 |
rpoC | 763049 | c.-321G>A | upstream_gene_variant | 0.15 |
rpoC | 763053 | c.-317T>C | upstream_gene_variant | 0.15 |
rpoC | 763070 | c.-300T>C | upstream_gene_variant | 0.15 |
rpoC | 763124 | c.-246C>T | upstream_gene_variant | 0.14 |
rpoC | 763687 | c.318C>T | synonymous_variant | 0.14 |
rpoC | 763717 | c.348T>C | synonymous_variant | 0.15 |
rpoC | 763732 | c.363C>G | synonymous_variant | 0.15 |
rpoC | 763884 | p.Ala172Val | missense_variant | 0.9 |
rpoC | 763886 | c.517C>A | synonymous_variant | 0.9 |
rpoC | 764188 | c.819A>G | synonymous_variant | 0.15 |
rpoC | 764194 | p.Glu275Asp | missense_variant | 0.15 |
rpoC | 764195 | p.Ser276Ala | missense_variant | 0.16 |
rpoC | 764209 | c.840C>G | synonymous_variant | 0.13 |
rpoC | 764221 | c.852C>T | synonymous_variant | 0.14 |
rpoC | 764269 | c.900G>C | synonymous_variant | 0.15 |
rpoC | 764272 | c.903G>C | synonymous_variant | 0.15 |
rpoC | 764278 | c.909A>G | synonymous_variant | 0.15 |
rpoC | 764284 | c.915G>C | synonymous_variant | 0.14 |
rpoC | 764506 | c.1137C>T | synonymous_variant | 0.14 |
rpoC | 764510 | c.1141C>T | synonymous_variant | 0.15 |
rpoC | 764521 | c.1152T>C | synonymous_variant | 0.15 |
rpoC | 764527 | c.1158C>T | synonymous_variant | 0.15 |
rpoC | 764560 | c.1191T>C | synonymous_variant | 0.25 |
rpoC | 764566 | c.1197C>G | synonymous_variant | 0.24 |
rpoC | 764575 | c.1206T>C | synonymous_variant | 0.23 |
rpoC | 764611 | c.1242G>T | synonymous_variant | 0.22 |
rpoC | 764626 | c.1257C>T | synonymous_variant | 0.19 |
rpoC | 764650 | c.1281G>T | synonymous_variant | 0.17 |
rpoC | 764893 | c.1524T>C | synonymous_variant | 0.14 |
rpoC | 765307 | p.Ile646Met | missense_variant | 0.14 |
rpoC | 765319 | c.1950A>G | synonymous_variant | 0.17 |
rpoC | 765328 | p.His653Gln | missense_variant | 0.18 |
rpoC | 765330 | p.Ser654Asn | missense_variant | 0.17 |
rpoC | 765409 | c.2040T>G | synonymous_variant | 0.13 |
rpoC | 765421 | c.2052C>G | synonymous_variant | 0.19 |
rpoC | 765451 | c.2082C>T | synonymous_variant | 0.23 |
rpoC | 765478 | c.2109T>C | synonymous_variant | 0.16 |
rpoC | 765496 | c.2127C>G | synonymous_variant | 0.16 |
rpoC | 765499 | c.2130C>G | synonymous_variant | 0.15 |
rpoC | 765529 | c.2160C>T | synonymous_variant | 0.22 |
rpoC | 765541 | c.2172C>G | synonymous_variant | 0.2 |
rpoC | 765547 | c.2178C>A | synonymous_variant | 0.2 |
rpoC | 765562 | c.2193G>T | synonymous_variant | 0.18 |
rpoC | 765565 | c.2196G>C | synonymous_variant | 0.18 |
rpoC | 765578 | c.2209C>T | synonymous_variant | 0.15 |
rpoC | 765583 | c.2214G>C | synonymous_variant | 0.15 |
rpoC | 765904 | c.2535C>G | synonymous_variant | 0.14 |
rpoC | 765937 | c.2568T>C | synonymous_variant | 0.16 |
rpoC | 765979 | c.2610C>G | synonymous_variant | 0.15 |
rpoC | 765982 | c.2613C>G | synonymous_variant | 0.15 |
rpoC | 765985 | c.2616C>T | synonymous_variant | 0.15 |
rpoC | 765994 | c.2625A>T | synonymous_variant | 0.15 |
rpoC | 766012 | c.2643C>G | synonymous_variant | 0.15 |
rpoC | 766021 | c.2652G>C | synonymous_variant | 0.15 |
rpoC | 766426 | c.3057C>T | synonymous_variant | 0.16 |
rpoC | 766447 | c.3078T>C | synonymous_variant | 0.16 |
rpoC | 766522 | c.3153C>T | synonymous_variant | 0.14 |
rpoC | 766525 | c.3156G>C | synonymous_variant | 0.14 |
rpoC | 766528 | c.3159T>C | synonymous_variant | 0.14 |
rpoC | 766531 | c.3162G>T | synonymous_variant | 0.14 |
rpoC | 766543 | c.3174C>T | synonymous_variant | 0.15 |
rpoC | 766657 | c.3288A>G | synonymous_variant | 0.16 |
rpoC | 766672 | c.3303T>C | synonymous_variant | 0.15 |
rpoC | 766675 | c.3306C>T | synonymous_variant | 0.16 |
rpoC | 766684 | c.3315C>T | synonymous_variant | 0.15 |
rpoC | 766738 | c.3369G>C | synonymous_variant | 0.14 |
rpoC | 766945 | c.3576A>G | synonymous_variant | 0.14 |
rpoC | 766996 | c.3627C>T | synonymous_variant | 0.18 |
rpoC | 767002 | c.3633G>C | synonymous_variant | 0.17 |
rpoC | 767030 | c.3661C>T | synonymous_variant | 0.2 |
rpoC | 767033 | c.3664_3666delTCGinsAGT | synonymous_variant | 0.2 |
rpoC | 767059 | c.3690T>G | synonymous_variant | 0.17 |
rpoC | 767062 | c.3693C>A | synonymous_variant | 0.17 |
rpoC | 767074 | c.3705T>C | synonymous_variant | 0.16 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 777431 | c.1047_1049delCGC | disruptive_inframe_deletion | 1.0 |
mmpS5 | 779625 | c.-720G>A | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303797 | c.867A>G | synonymous_variant | 0.14 |
fbiC | 1303800 | c.870G>C | synonymous_variant | 0.14 |
fbiC | 1304533 | c.1603T>C | synonymous_variant | 0.17 |
fbiC | 1304544 | c.1614T>C | synonymous_variant | 0.17 |
fbiC | 1304547 | c.1617C>G | synonymous_variant | 0.17 |
fbiC | 1304568 | c.1638T>C | synonymous_variant | 0.17 |
fbiC | 1304580 | c.1650T>C | synonymous_variant | 0.15 |
fbiC | 1304607 | c.1677C>T | synonymous_variant | 0.18 |
fbiC | 1304817 | c.1887T>C | synonymous_variant | 0.17 |
fbiC | 1304829 | c.1899T>C | synonymous_variant | 0.21 |
fbiC | 1304832 | c.1902C>G | synonymous_variant | 0.21 |
fbiC | 1304853 | c.1923C>A | synonymous_variant | 0.19 |
fbiC | 1304856 | c.1926C>T | synonymous_variant | 0.18 |
fbiC | 1304868 | c.1938G>C | synonymous_variant | 0.19 |
fbiC | 1304869 | p.Leu647Met | missense_variant | 0.19 |
fbiC | 1304893 | p.Gly655Ser | missense_variant | 0.22 |
fbiC | 1304916 | c.1986T>C | synonymous_variant | 0.2 |
fbiC | 1304925 | c.1995G>C | synonymous_variant | 0.14 |
fbiC | 1304928 | c.1998T>C | synonymous_variant | 0.15 |
fbiC | 1304931 | c.2001C>G | synonymous_variant | 0.15 |
fbiC | 1304937 | c.2007G>C | synonymous_variant | 0.15 |
fbiC | 1304970 | c.2040G>C | synonymous_variant | 0.12 |
embR | 1417019 | p.Cys110Tyr | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1471862 | n.17T>G | non_coding_transcript_exon_variant | 0.98 |
rrs | 1471984 | n.139T>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472023 | n.178G>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472034 | n.189T>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472042 | n.197T>C | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472061 | n.216A>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474632 | n.975G>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474717 | n.1060A>C | non_coding_transcript_exon_variant | 0.13 |
rrl | 1474753 | n.1096A>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474812 | n.1155G>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474950 | n.1293G>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474956 | n.1299C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474960 | n.1303C>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474961 | n.1307_1308delTG | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474965 | n.1308G>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474999 | n.1342C>G | non_coding_transcript_exon_variant | 0.24 |
rrl | 1475006 | n.1349A>G | non_coding_transcript_exon_variant | 0.23 |
rrl | 1475031 | n.1374G>A | non_coding_transcript_exon_variant | 0.21 |
rrl | 1475061 | n.1404C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475213 | n.1556C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475315 | n.1658A>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475419 | n.1762C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475429 | n.1772G>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475460 | n.1803A>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475483 | n.1826C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475629 | n.1972G>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475659 | n.2002G>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475763 | n.2106C>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475988 | n.2331A>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476529 | n.2872A>G | non_coding_transcript_exon_variant | 0.19 |
inhA | 1674006 | c.-196T>C | upstream_gene_variant | 0.14 |
inhA | 1674036 | c.-166G>A | upstream_gene_variant | 0.14 |
fabG1 | 1674037 | p.Gln200Lys | missense_variant | 0.14 |
inhA | 1674045 | c.-157G>C | upstream_gene_variant | 0.14 |
fabG1 | 1674049 | p.Gln204Glu | missense_variant | 0.14 |
inhA | 1674054 | c.-148T>C | upstream_gene_variant | 0.14 |
inhA | 1674060 | c.-142A>C | upstream_gene_variant | 0.14 |
inhA | 1674069 | c.-133G>C | upstream_gene_variant | 0.13 |
fabG1 | 1674070 | p.Val211Ile | missense_variant | 0.13 |
fabG1 | 1674079 | p.Pro214Ala | missense_variant | 0.14 |
inhA | 1674471 | c.270G>T | synonymous_variant | 0.16 |
inhA | 1674486 | c.285T>C | synonymous_variant | 0.18 |
inhA | 1674489 | c.288G>C | synonymous_variant | 0.18 |
inhA | 1674542 | p.Ala114Glu | missense_variant | 0.17 |
inhA | 1674546 | c.345T>C | synonymous_variant | 0.16 |
inhA | 1674549 | c.348G>C | synonymous_variant | 0.15 |
inhA | 1674579 | c.378G>C | synonymous_variant | 0.18 |
inhA | 1674585 | c.384T>C | synonymous_variant | 0.21 |
inhA | 1674589 | p.Met130Leu | missense_variant | 0.19 |
rpsA | 1833613 | c.72C>A | synonymous_variant | 0.15 |
rpsA | 1833634 | c.93G>A | synonymous_variant | 0.16 |
rpsA | 1833646 | c.105T>C | synonymous_variant | 0.16 |
rpsA | 1833667 | c.126C>G | synonymous_variant | 0.17 |
rpsA | 1833724 | c.183C>G | synonymous_variant | 0.16 |
rpsA | 1833727 | c.186G>C | synonymous_variant | 0.15 |
rpsA | 1833739 | c.198C>A | synonymous_variant | 0.18 |
rpsA | 1833742 | c.201A>G | synonymous_variant | 0.17 |
rpsA | 1833745 | c.204G>C | synonymous_variant | 0.18 |
rpsA | 1833790 | c.249T>C | synonymous_variant | 0.19 |
rpsA | 1833793 | c.252C>T | synonymous_variant | 0.18 |
rpsA | 1833811 | c.270G>T | synonymous_variant | 0.19 |
rpsA | 1833841 | c.300C>G | synonymous_variant | 0.2 |
rpsA | 1833847 | c.306C>G | synonymous_variant | 0.19 |
rpsA | 1833856 | c.315A>G | synonymous_variant | 0.19 |
rpsA | 1833862 | c.321G>C | synonymous_variant | 0.16 |
rpsA | 1833874 | c.333T>C | synonymous_variant | 0.15 |
rpsA | 1833953 | c.412C>T | synonymous_variant | 0.14 |
rpsA | 1834555 | c.1014T>C | synonymous_variant | 0.15 |
rpsA | 1834609 | c.1068T>C | synonymous_variant | 0.14 |
rpsA | 1834639 | c.1098T>C | synonymous_variant | 0.15 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102240 | p.Arg268His | missense_variant | 0.99 |
katG | 2154724 | p.Arg463Leu | missense_variant | 0.99 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2168742 | p.Gly624Asp | missense_variant | 0.99 |
Rv1979c | 2222308 | p.Asp286Gly | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518132 | c.18C>T | synonymous_variant | 1.0 |
ahpC | 2726051 | c.-142G>A | upstream_gene_variant | 1.0 |
folC | 2747468 | p.Asp44Gly | missense_variant | 0.98 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3448714 | p.Asp71His | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474597 | c.591C>A | synonymous_variant | 0.99 |
fprA | 3475159 | p.Asn385Asp | missense_variant | 1.0 |
rpoA | 3878052 | c.456C>T | synonymous_variant | 0.14 |
rpoA | 3878055 | c.453A>G | synonymous_variant | 0.14 |
rpoA | 3878118 | c.390T>C | synonymous_variant | 0.15 |
rpoA | 3878130 | c.378C>G | synonymous_variant | 0.15 |
rpoA | 3878163 | c.345C>T | synonymous_variant | 0.15 |
rpoA | 3878175 | c.333G>C | synonymous_variant | 0.14 |
rpoA | 3878187 | c.321C>G | synonymous_variant | 0.16 |
rpoA | 3878193 | c.315T>C | synonymous_variant | 0.15 |
rpoA | 3878199 | c.309T>C | synonymous_variant | 0.15 |
rpoA | 3878202 | c.306G>C | synonymous_variant | 0.15 |
rpoA | 3878217 | c.291A>G | synonymous_variant | 0.15 |
rpoA | 3878235 | c.273G>A | synonymous_variant | 0.18 |
rpoA | 3878244 | c.264G>A | synonymous_variant | 0.16 |
rpoA | 3878247 | c.261G>C | synonymous_variant | 0.16 |
rpoA | 3878256 | c.252G>C | synonymous_variant | 0.16 |
rpoA | 3878264 | p.Ser82Gly | missense_variant | 0.15 |
rpoA | 3878265 | c.243G>A | synonymous_variant | 0.16 |
rpoA | 3878271 | c.237T>C | synonymous_variant | 0.17 |
rpoA | 3878276 | c.232C>T | synonymous_variant | 0.18 |
rpoA | 3878283 | p.Glu75Asp | missense_variant | 0.18 |
rpoA | 3878292 | c.216T>C | synonymous_variant | 0.17 |
rpoA | 3878304 | c.204G>C | synonymous_variant | 0.17 |
rpoA | 3878322 | c.186A>G | synonymous_variant | 0.18 |
rpoA | 3878331 | c.177A>G | synonymous_variant | 0.18 |
rpoA | 3878337 | c.171T>C | synonymous_variant | 0.18 |
rpoA | 3878358 | c.150C>G | synonymous_variant | 0.2 |
rpoA | 3878364 | c.144A>T | synonymous_variant | 0.19 |
rpoA | 3878381 | c.127C>T | synonymous_variant | 0.17 |
rpoA | 3878397 | c.111G>A | synonymous_variant | 0.16 |
rpoA | 3878415 | c.93C>T | synonymous_variant | 0.17 |
rpoA | 3878424 | c.84G>C | synonymous_variant | 0.15 |
rpoA | 3878442 | c.66G>C | synonymous_variant | 0.13 |
clpC1 | 4038347 | c.2358G>C | synonymous_variant | 0.14 |
clpC1 | 4038353 | c.2352G>A | synonymous_variant | 0.14 |
clpC1 | 4038356 | c.2349T>C | synonymous_variant | 0.15 |
clpC1 | 4038359 | c.2346A>G | synonymous_variant | 0.14 |
clpC1 | 4038368 | c.2337T>C | synonymous_variant | 0.17 |
clpC1 | 4038374 | c.2331C>T | synonymous_variant | 0.18 |
clpC1 | 4038388 | c.2317T>C | synonymous_variant | 0.19 |
clpC1 | 4038392 | c.2313C>T | synonymous_variant | 0.19 |
clpC1 | 4038395 | c.2310C>G | synonymous_variant | 0.19 |
clpC1 | 4038398 | c.2307G>T | synonymous_variant | 0.17 |
clpC1 | 4038403 | c.2302T>C | synonymous_variant | 0.16 |
clpC1 | 4038410 | c.2295C>T | synonymous_variant | 0.17 |
clpC1 | 4038419 | c.2286T>C | synonymous_variant | 0.2 |
clpC1 | 4038433 | c.2272C>T | synonymous_variant | 0.19 |
clpC1 | 4038436 | p.Ala757Ser | missense_variant | 0.2 |
clpC1 | 4038444 | p.Ala754Lys | missense_variant | 0.16 |
clpC1 | 4038446 | c.2259T>C | synonymous_variant | 0.16 |
clpC1 | 4038456 | p.Val750Glu | missense_variant | 0.16 |
clpC1 | 4038530 | p.Glu725Asp | missense_variant | 0.17 |
clpC1 | 4038536 | c.2169C>T | synonymous_variant | 0.17 |
clpC1 | 4039601 | c.1104G>A | synonymous_variant | 0.17 |
clpC1 | 4039610 | c.1095G>C | synonymous_variant | 0.15 |
clpC1 | 4039991 | c.714G>T | synonymous_variant | 0.14 |
clpC1 | 4040018 | c.687G>C | synonymous_variant | 0.16 |
clpC1 | 4040033 | c.672G>C | synonymous_variant | 0.15 |
clpC1 | 4040042 | c.663C>A | synonymous_variant | 0.15 |
clpC1 | 4040057 | c.648C>T | synonymous_variant | 0.15 |
clpC1 | 4040063 | c.642G>C | synonymous_variant | 0.14 |
clpC1 | 4040517 | p.Val63Ala | missense_variant | 0.96 |
clpC1 | 4040719 | c.-15A>G | upstream_gene_variant | 1.0 |
panD | 4044174 | c.108C>G | synonymous_variant | 0.14 |
embC | 4240657 | c.795G>T | synonymous_variant | 0.14 |
embC | 4240671 | p.Thr270Ile | missense_variant | 1.0 |
embC | 4240678 | c.816T>G | synonymous_variant | 0.14 |
embC | 4240685 | p.Thr275Ala | missense_variant | 0.14 |
embC | 4240698 | p.Ala279Gly | missense_variant | 0.14 |
embC | 4240723 | c.861C>G | synonymous_variant | 0.16 |
embC | 4241042 | p.Asn394Asp | missense_variant | 0.91 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4245969 | p.Pro913Ser | missense_variant | 1.0 |
embB | 4246553 | c.40C>A | synonymous_variant | 0.36 |
embB | 4246564 | p.Leu17Phe | missense_variant | 0.18 |
embB | 4246574 | p.Ala21Ser | missense_variant | 0.18 |
embB | 4246584 | p.Arg24Pro | missense_variant | 0.25 |
embB | 4247646 | p.Glu378Ala | missense_variant | 1.0 |
embB | 4248098 | p.Ile529Phe | missense_variant | 0.16 |
embB | 4248119 | p.Ser536Ala | missense_variant | 0.17 |
embB | 4248122 | p.Leu537Val | missense_variant | 0.16 |
embB | 4248133 | c.1620C>G | synonymous_variant | 0.17 |
embB | 4248142 | c.1629T>C | synonymous_variant | 0.16 |
embB | 4248143 | c.1630T>C | synonymous_variant | 0.16 |
embB | 4248157 | c.1644A>G | synonymous_variant | 0.18 |
embB | 4248172 | c.1659G>C | synonymous_variant | 0.17 |
embB | 4248205 | c.1692C>A | synonymous_variant | 0.17 |
embB | 4248206 | p.Ser565Gly | missense_variant | 0.16 |
embB | 4248217 | c.1704C>T | synonymous_variant | 0.17 |
embB | 4248220 | c.1707A>G | synonymous_variant | 0.17 |
embB | 4248241 | c.1728C>T | synonymous_variant | 0.17 |
embB | 4248252 | p.Gly580Ala | missense_variant | 0.15 |
aftB | 4267960 | p.Val293Met | missense_variant | 1.0 |
ubiA | 4269387 | p.Glu149Asp | missense_variant | 0.99 |
aftB | 4269606 | c.-770T>C | upstream_gene_variant | 1.0 |
ethA | 4326148 | c.1326G>T | synonymous_variant | 1.0 |
ethA | 4326439 | p.Asn345Lys | missense_variant | 1.0 |
whiB6 | 4338203 | p.Arg107Cys | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
whiB6 | 4338603 | c.-82C>T | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407799 | p.Val135Ala | missense_variant | 1.0 |
gid | 4407848 | p.Ala119Thr | missense_variant | 1.0 |
gid | 4407873 | c.330G>T | synonymous_variant | 0.99 |