lineage | Count |
---|---|
lineage4.9 | 52 |
48 | |
lineage4 | 38 |
lineage4.8.1 | 1 |
lineage3 | 8 |
lineage4.1.2.1 | 4 |
lineage1.2.2.2 | 1 |
lineage2.2 | 4 |
lineage2.2.1 | 6 |
La1 | 1 |
lineage4.5 | 2 |
lineage4.6.1.1 | 1 |
lineage4.9.1 | 1 |
lineage4.8 | 3 |
lineage2.2.1.2 | 1 |
lineage4.9;lineage2.2 | 1 |
lineage4.4.1.1.1 | 1 |
lineage1.1.1 | 1 |
La1.7.1 | 1 |
lineage6.3;lineage4.9;lineage2.1 | 1 |
lineage4.3.4.2.1 | 1 |
lineage4.1.1 | 1 |
lineage5.1.4 | 1 |
lineage4.2.1 | 1 |
spoligotype | Count |
---|---|
None | 180 |
ID | Drug resistance | Lineage | Country iso2 | SRR6046611 | HR-TB | lineage4.9 | None | ERR4830353 | Other | None | SRR6046492 | Other | None | SRR6046594 | HR-TB | lineage4 | None | SRR6046878 | HR-TB | lineage4 | None | SRR6046802 | Other | lineage4 | None | SRR6046644 | HR-TB | None | SRR6046897 | Sensitive | lineage4 | None | SRR7535086 | Other | None | ERR4831638 | Sensitive | None | ERR3283024 | Other | None | SRR9971150 | RR-TB | lineage4.8.1 | None | ERR10796630 | HR-TB | None | ERR323108 | HR-TB | lineage4 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283032 | HR-TB | None | ERR3283058 | Other | lineage4.9 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR349298 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR349330 | Sensitive | lineage4 | None | ERR363421 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR369151 | Sensitive | lineage4.9 | None | ERR363498 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR369159 | Sensitive | lineage4 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR373945 | HR-TB | lineage4 | None | ERR369163 | Sensitive | lineage4 | None | ERR369162 | Sensitive | lineage4 | None | ERR3797044 | Other | None | ERR3797017 | Other | None | ERR3797043 | HR-TB | None | ERR3797036 | HR-TB | None | ERR3797014 | Other | None | ERR3797065 | MDR-TB | lineage4 | None | ERR400320 | Sensitive | lineage4 | None | ERR3797061 | Other | None | ERR4178226 | Sensitive | lineage4 | None | ERR400326 | Sensitive | lineage4 | None | ERR400345 | Other | lineage4 | None | ERR400529 | Other | lineage3 | None | ERR400336 | Sensitive | lineage4 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR473303 | Sensitive | lineage4.9 | None | ERR473367 | Sensitive | lineage4.9 | None | ERR4769450 | HR-TB | None | ERR4769452 | HR-TB | None | ERR4769457 | Other | lineage4.9 | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR4797285 | MDR-TB | lineage1.2.2.2 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4798431 | HR-TB | None | ERR4799025 | Pre-XDR-TB | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798262 | HR-TB | La1 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4799547 | Sensitive | lineage2.2.1 | None | ERR4811030 | Sensitive | None | ERR4812155 | Sensitive | None | ERR6358991 | HR-TB | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR6359069 | Other | lineage4.9 | None | ERR6359070 | Other | lineage4.9 | None | ERR6865502 | Sensitive | lineage4 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR245758 | Other | lineage4.9.1 | None | SRR1172885 | HR-TB | lineage4.9 | None | ERR736837 | Other | lineage4.9 | None | SRR10315751 | MDR-TB | lineage4.8 | None | ERR736835 | HR-TB | None | ERR9786384 | Sensitive | lineage4.1.2.1 | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1175507 | MDR-TB | lineage4 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1735587 | Sensitive | lineage3 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR14782405 | HR-TB | None | SRR16157123 | Other | lineage4.9 | None | SRR1735585 | Sensitive | lineage3 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR17658565 | Other | lineage3 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR20970016 | Other | lineage2.2 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR22424787 | Sensitive | lineage4.9 | None | SRR3675488 | HR-TB | None | SRR3675472 | Sensitive | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR3675477 | Other | lineage4.9 | None | SRR3675209 | Sensitive | lineage4.9 | None | SRR3675222 | Other | None | SRR3675501 | HR-TB | None | ERR4815471 | Other | lineage4.9 | None | SRR3675234 | Other | None | SRR3675229 | Other | lineage4 | None | SRR3675318 | Other | lineage4.9 | None | SRR3675265 | Other | lineage4 | None | SRR3675270 | HR-TB | None | SRR3675292 | Sensitive | lineage4 | None | SRR3675247 | Other | lineage4.9 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | SRR3675279 | Other | None | SRR3675312 | HR-TB | lineage4 | None | ERR176751 | HR-TB | None | SRR3675387 | Sensitive | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR3675522 | Other | None | SRR3675455 | Sensitive | lineage4 | None | ERR4816964 | Other | lineage4.9 | None | ERR4816113 | Sensitive | lineage4.1.1 | None | ERR4816466 | HR-TB | None | SRR3675577 | Sensitive | lineage4.9 | None | ERR212121 | HR-TB | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR4816548 | MDR-TB | lineage4.5 | None | ERR4816656 | HR-TB | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR4819051 | Other | lineage4 | None | ERR6359082 | Other | lineage4.9 | None | ERR4818536 | Other | lineage4.9 | None | ERR4818607 | Sensitive | lineage4.9 | None | SRR5341396 | Other | lineage4 | None | ERR4819357 | Other | lineage4.9 | None | ERR4819462 | Other | lineage4 | None | ERR400403 | Sensitive | lineage3 | gb | ERR2514552 | Sensitive | lineage3 | None | ERR4818929 | HR-TB | None | ERR2513283 | Other | lineage5.1.4 | None | SRR5007170 | RR-TB | lineage4.9 | None | ERR2514327 | HR-TB | lineage4.8 | None | SRR5341296 | Sensitive | lineage4.9 | None | ERR4819933 | Other | lineage4.9 | None | ERR2693257 | Other | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR2693231 | Other | None | ERR2693230 | Other | None | ERR2693254 | Other | None | SRR6045503 | HR-TB | None | SRR5535933 | HR-TB | None | ERR2660539 | Other | lineage4.9 | None | SRR6045519 | HR-TB | None | SRR6045555 | HR-TB | None | ERR4821276 | Other | lineage3 | None | SRR6046151 | Sensitive | lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | SRR6045706 | Sensitive | lineage4 | None | SRR6046152 | Other | lineage4.9 | None | SRR6046133 | HR-TB | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6044780 | Other | lineage4.9 | None | SRR6045010 | Other | lineage4 | None | SRR6044890 | Other | lineage4.9 | None | SRR6045053 | Other | None | SRR6045217 | Other | lineage4 | None | SRR6046046 | Other | None | SRR6045233 | HR-TB | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6046245 | Other | lineage4.9 | None |
---|