Run ID: ERR9786384
Sample name:
Date: 02-04-2023 12:23:18
Number of reads: 2761345
Percentage reads mapped: 89.76
Strain: lineage4.1.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 0.97 |
lineage4.1.2 | Euro-American | T;H | None | 0.99 |
lineage4.1.2.1 | Euro-American (Haarlem) | T1;H1 | RD182 | 0.99 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7538 | c.237G>A | synonymous_variant | 0.15 |
gyrA | 7547 | c.246C>T | synonymous_variant | 0.15 |
gyrA | 7559 | c.258G>C | synonymous_variant | 0.16 |
gyrA | 7571 | c.270G>T | synonymous_variant | 0.18 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7587 | c.286C>T | synonymous_variant | 0.18 |
gyrA | 7607 | c.306C>G | synonymous_variant | 0.18 |
gyrA | 7622 | c.321C>T | synonymous_variant | 0.18 |
gyrA | 7628 | c.327G>C | synonymous_variant | 0.18 |
gyrA | 7631 | c.330G>C | synonymous_variant | 0.19 |
gyrA | 7637 | c.336C>G | synonymous_variant | 0.19 |
gyrA | 7652 | c.351C>T | synonymous_variant | 0.19 |
gyrA | 7658 | c.357A>T | synonymous_variant | 0.18 |
gyrA | 7664 | c.363T>C | synonymous_variant | 0.17 |
gyrA | 7670 | c.369A>G | synonymous_variant | 0.17 |
gyrA | 7694 | c.393A>G | synonymous_variant | 0.17 |
gyrA | 7697 | c.396C>G | synonymous_variant | 0.16 |
gyrA | 7710 | c.409T>C | synonymous_variant | 0.17 |
gyrA | 7727 | c.426G>T | synonymous_variant | 0.14 |
gyrA | 7775 | c.474C>T | synonymous_variant | 0.15 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 0.94 |
mshA | 575679 | p.Asn111Ser | missense_variant | 0.92 |
ccsA | 620173 | p.Val95Ile | missense_variant | 0.15 |
ccsA | 620181 | c.291G>C | synonymous_variant | 0.16 |
ccsA | 620198 | p.Gln103Leu | missense_variant | 0.15 |
ccsA | 620249 | p.Ser120Cys | missense_variant | 0.15 |
ccsA | 620256 | c.366C>G | synonymous_variant | 0.16 |
ccsA | 620262 | c.372C>G | synonymous_variant | 0.16 |
ccsA | 620283 | c.393T>C | synonymous_variant | 0.16 |
ccsA | 620284 | p.Ala132Pro | missense_variant | 0.15 |
ccsA | 620288 | p.Arg133Gln | missense_variant | 0.15 |
ccsA | 620307 | c.417C>T | synonymous_variant | 0.15 |
ccsA | 620319 | c.429C>T | synonymous_variant | 0.15 |
rpoB | 760115 | c.309C>T | synonymous_variant | 0.93 |
rpoB | 760223 | c.417T>C | synonymous_variant | 0.16 |
rpoB | 760235 | c.429T>C | synonymous_variant | 0.18 |
rpoB | 760253 | c.447T>C | synonymous_variant | 0.19 |
rpoB | 760283 | c.477G>C | synonymous_variant | 0.2 |
rpoB | 760307 | c.501T>C | synonymous_variant | 0.18 |
rpoB | 760313 | c.507G>C | synonymous_variant | 0.18 |
rpoB | 760331 | c.525G>T | synonymous_variant | 0.15 |
rpoB | 760991 | c.1185G>C | synonymous_variant | 0.16 |
rpoB | 761015 | c.1209G>C | synonymous_variant | 0.17 |
rpoB | 761021 | c.1215G>C | synonymous_variant | 0.16 |
rpoB | 761027 | c.1221A>G | synonymous_variant | 0.16 |
rpoB | 761273 | c.1467T>C | synonymous_variant | 0.16 |
rpoB | 761282 | c.1476C>T | synonymous_variant | 0.17 |
rpoB | 761318 | c.1512G>C | synonymous_variant | 0.18 |
rpoB | 761327 | c.1521A>G | synonymous_variant | 0.19 |
rpoB | 761345 | c.1539G>C | synonymous_variant | 0.2 |
rpoB | 761354 | c.1548C>G | synonymous_variant | 0.21 |
rpoB | 761360 | c.1554T>C | synonymous_variant | 0.22 |
rpoB | 761362 | p.Ser519Thr | missense_variant | 0.22 |
rpoB | 761375 | c.1569G>C | synonymous_variant | 0.21 |
rpoB | 761408 | c.1602G>C | synonymous_variant | 0.19 |
rpoB | 761414 | c.1608A>G | synonymous_variant | 0.2 |
rpoB | 761423 | c.1617T>C | synonymous_variant | 0.21 |
rpoB | 761435 | c.1629T>C | synonymous_variant | 0.21 |
rpoB | 761437 | p.Ala544Glu | missense_variant | 0.21 |
rpoB | 761439 | p.Asp545Asn | missense_variant | 0.21 |
rpoB | 761444 | c.1638T>C | synonymous_variant | 0.21 |
rpoB | 761447 | c.1641C>G | synonymous_variant | 0.21 |
rpoB | 761465 | c.1659G>C | synonymous_variant | 0.21 |
rpoB | 761471 | c.1665C>G | synonymous_variant | 0.2 |
rpoB | 761492 | c.1686G>C | synonymous_variant | 0.19 |
rpoB | 761495 | c.1689G>A | synonymous_variant | 0.19 |
rpoB | 762299 | c.2493G>C | synonymous_variant | 0.16 |
rpoB | 762329 | c.2523G>C | synonymous_variant | 0.16 |
rpoB | 762338 | c.2532T>C | synonymous_variant | 0.17 |
rpoB | 762347 | c.2541T>C | synonymous_variant | 0.17 |
rpoB | 762362 | p.Glu852Asp | missense_variant | 0.16 |
rpoB | 762369 | c.2563T>C | synonymous_variant | 0.16 |
rpoC | 762374 | c.-996G>C | upstream_gene_variant | 0.17 |
rpoC | 762380 | c.-990T>G | upstream_gene_variant | 0.17 |
rpoC | 762395 | c.-975G>C | upstream_gene_variant | 0.17 |
rpoC | 762398 | c.-972T>C | upstream_gene_variant | 0.18 |
rpoC | 762404 | c.-966T>C | upstream_gene_variant | 0.18 |
rpoC | 762410 | c.-960T>C | upstream_gene_variant | 0.19 |
rpoC | 762416 | c.-954A>G | upstream_gene_variant | 0.18 |
rpoC | 762995 | c.-375G>T | upstream_gene_variant | 0.17 |
rpoC | 763070 | c.-300T>C | upstream_gene_variant | 0.17 |
rpoC | 763741 | c.372C>T | synonymous_variant | 0.14 |
rpoC | 763816 | c.447C>G | synonymous_variant | 0.16 |
rpoC | 763835 | p.Ala156Met | missense_variant | 0.16 |
rpoC | 763851 | p.Ala161Gly | missense_variant | 0.16 |
rpoC | 763855 | c.486C>T | synonymous_variant | 0.16 |
rpoC | 763858 | c.489A>G | synonymous_variant | 0.16 |
rpoC | 763963 | c.594C>T | synonymous_variant | 1.0 |
rpoC | 764365 | c.996C>T | synonymous_variant | 0.14 |
rpoC | 764560 | c.1191T>C | synonymous_variant | 0.15 |
rpoC | 764566 | c.1197C>G | synonymous_variant | 0.14 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
rpoC | 765541 | c.2172C>G | synonymous_variant | 0.17 |
rpoC | 765553 | c.2184C>T | synonymous_variant | 0.16 |
rpoC | 765556 | c.2187G>C | synonymous_variant | 0.16 |
rpoC | 765562 | c.2193G>C | synonymous_variant | 0.17 |
rpoC | 765565 | c.2196G>C | synonymous_variant | 0.17 |
rpoC | 765583 | c.2214G>T | synonymous_variant | 0.18 |
rpoC | 765613 | p.His748Gln | missense_variant | 0.18 |
rpoC | 765796 | c.2427C>T | synonymous_variant | 0.13 |
rpoC | 766426 | c.3057C>T | synonymous_variant | 0.14 |
rpoC | 766447 | c.3078T>C | synonymous_variant | 0.15 |
rpoC | 766456 | c.3087C>G | synonymous_variant | 0.16 |
rpoC | 766459 | c.3090G>T | synonymous_variant | 0.16 |
rpoC | 766483 | c.3114G>C | synonymous_variant | 0.16 |
rpoC | 766528 | c.3159T>C | synonymous_variant | 0.15 |
rpoC | 766543 | c.3174C>G | synonymous_variant | 0.16 |
rpoC | 766894 | c.3525T>C | synonymous_variant | 0.17 |
rpoC | 766895 | c.3526T>C | synonymous_variant | 0.17 |
rpoC | 766900 | c.3531T>C | synonymous_variant | 0.17 |
rpoC | 766918 | c.3549C>T | synonymous_variant | 0.16 |
rpoC | 766933 | c.3564A>C | synonymous_variant | 0.17 |
rpoC | 766945 | c.3576A>G | synonymous_variant | 0.17 |
rpoC | 766963 | c.3594T>C | synonymous_variant | 0.18 |
rpoC | 766972 | c.3603G>C | synonymous_variant | 0.18 |
rpoC | 766978 | c.3609C>T | synonymous_variant | 0.18 |
rpoC | 766981 | c.3612T>C | synonymous_variant | 0.18 |
rpoC | 766987 | c.3618G>C | synonymous_variant | 0.17 |
rpoC | 767032 | c.3663G>C | synonymous_variant | 0.21 |
rpoC | 767059 | c.3690T>G | synonymous_variant | 0.18 |
rpoC | 767062 | c.3693C>A | synonymous_variant | 0.18 |
rpoC | 767098 | c.3729T>C | synonymous_variant | 0.17 |
rpoC | 767134 | c.3765C>A | synonymous_variant | 0.14 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1304675 | p.Gly582Asp | missense_variant | 0.15 |
fbiC | 1304682 | c.1752C>G | synonymous_variant | 0.17 |
fbiC | 1304691 | c.1761G>C | synonymous_variant | 0.17 |
fbiC | 1304694 | c.1764A>G | synonymous_variant | 0.17 |
fbiC | 1304703 | c.1773C>G | synonymous_variant | 0.17 |
fbiC | 1304709 | c.1779C>G | synonymous_variant | 0.17 |
fbiC | 1304715 | c.1785G>C | synonymous_variant | 0.17 |
fbiC | 1304724 | c.1794A>G | synonymous_variant | 0.18 |
fbiC | 1304727 | c.1797A>G | synonymous_variant | 0.18 |
fbiC | 1304742 | c.1812T>G | synonymous_variant | 0.17 |
fbiC | 1304748 | c.1818T>C | synonymous_variant | 0.16 |
fbiC | 1304757 | c.1827A>G | synonymous_variant | 0.16 |
fbiC | 1304763 | c.1833C>G | synonymous_variant | 0.17 |
fbiC | 1304778 | p.Asp616Glu | missense_variant | 0.18 |
fbiC | 1304784 | c.1854T>G | synonymous_variant | 0.17 |
fbiC | 1304787 | c.1857T>C | synonymous_variant | 0.19 |
fbiC | 1304799 | c.1869G>C | synonymous_variant | 0.19 |
fbiC | 1304808 | c.1878C>G | synonymous_variant | 0.18 |
fbiC | 1304811 | c.1881C>G | synonymous_variant | 0.18 |
fbiC | 1304817 | c.1887T>C | synonymous_variant | 0.2 |
fbiC | 1304826 | c.1896G>C | synonymous_variant | 0.2 |
fbiC | 1304829 | c.1899T>C | synonymous_variant | 0.2 |
fbiC | 1304832 | c.1902C>T | synonymous_variant | 0.19 |
fbiC | 1304853 | c.1923C>T | synonymous_variant | 0.18 |
fbiC | 1304856 | c.1926C>G | synonymous_variant | 0.19 |
fbiC | 1304869 | c.1939C>T | synonymous_variant | 0.16 |
fbiC | 1304910 | c.1980G>C | synonymous_variant | 0.15 |
fbiC | 1304916 | c.1986T>C | synonymous_variant | 0.15 |
fbiC | 1305006 | c.2076A>G | synonymous_variant | 0.16 |
fbiC | 1305015 | c.2085G>C | synonymous_variant | 0.15 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1473836 | n.179A>G | non_coding_transcript_exon_variant | 0.16 |
rrl | 1473876 | n.219G>A | non_coding_transcript_exon_variant | 0.16 |
rrl | 1473898 | n.241C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474030 | n.373G>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474717 | n.1060A>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474794 | n.1137C>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474812 | n.1155G>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474831 | n.1174A>G | non_coding_transcript_exon_variant | 0.16 |
rrl | 1474950 | n.1293G>A | non_coding_transcript_exon_variant | 0.16 |
rrl | 1474952 | n.1296_1300delCATCC | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474961 | n.1304T>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474962 | n.1305T>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474963 | n.1306G>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474964 | n.1307T>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474967 | n.1311_1315delGGGTG | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474991 | n.1334T>C | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475006 | n.1349A>G | non_coding_transcript_exon_variant | 0.24 |
rrl | 1475017 | n.1360_1361insT | non_coding_transcript_exon_variant | 0.24 |
rrl | 1475061 | n.1404C>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1475088 | n.1431A>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1475213 | n.1556C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475252 | n.1595C>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1475253 | n.1596T>G | non_coding_transcript_exon_variant | 0.16 |
rrl | 1475266 | n.1609T>C | non_coding_transcript_exon_variant | 0.16 |
rrl | 1475267 | n.1610G>A | non_coding_transcript_exon_variant | 0.16 |
rrl | 1475273 | n.1616T>G | non_coding_transcript_exon_variant | 0.16 |
rrl | 1475275 | n.1618C>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1475276 | n.1619T>C | non_coding_transcript_exon_variant | 0.16 |
rrl | 1475289 | n.1632G>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475291 | n.1634A>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475313 | n.1656G>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475315 | n.1658A>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475355 | n.1698C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475369 | n.1712G>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475419 | n.1762C>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1475429 | n.1772G>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475659 | n.2002G>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475883 | n.2226A>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475988 | n.2331A>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476049 | n.2392C>T | non_coding_transcript_exon_variant | 0.14 |
inhA | 1674443 | p.Ala81Val | missense_variant | 0.14 |
inhA | 1674452 | p.Ala84Glu | missense_variant | 0.16 |
rpsA | 1834030 | c.489C>G | synonymous_variant | 0.15 |
rpsA | 1834609 | c.1068T>C | synonymous_variant | 0.17 |
rpsA | 1834618 | c.1077G>A | synonymous_variant | 0.17 |
rpsA | 1834622 | c.1081_1083delTCGinsAGC | synonymous_variant | 0.17 |
rpsA | 1834633 | c.1092A>G | synonymous_variant | 0.17 |
rpsA | 1834639 | c.1098T>C | synonymous_variant | 0.17 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 0.92 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
rpoA | 3877887 | c.621G>A | synonymous_variant | 0.14 |
rpoA | 3877962 | c.546G>C | synonymous_variant | 0.16 |
rpoA | 3877974 | c.534G>C | synonymous_variant | 0.15 |
rpoA | 3877986 | c.522G>C | synonymous_variant | 0.16 |
rpoA | 3877989 | c.519A>G | synonymous_variant | 0.16 |
rpoA | 3878001 | c.507A>G | synonymous_variant | 0.17 |
rpoA | 3878019 | c.489A>C | synonymous_variant | 0.18 |
rpoA | 3878022 | c.486T>C | synonymous_variant | 0.17 |
rpoA | 3878028 | c.480G>C | synonymous_variant | 0.17 |
rpoA | 3878031 | c.477T>C | synonymous_variant | 0.17 |
rpoA | 3878040 | c.468T>C | synonymous_variant | 0.17 |
rpoA | 3878046 | c.462T>C | synonymous_variant | 0.17 |
rpoA | 3878055 | c.453A>G | synonymous_variant | 0.18 |
rpoA | 3878145 | c.362_363insGT | frameshift_variant | 0.16 |
rpoA | 3878160 | c.348C>G | synonymous_variant | 0.17 |
rpoA | 3878169 | c.339G>C | synonymous_variant | 0.18 |
rpoA | 3878184 | c.324C>T | synonymous_variant | 0.18 |
rpoA | 3878187 | c.321C>G | synonymous_variant | 0.18 |
rpoA | 3878193 | c.315T>C | synonymous_variant | 0.18 |
rpoA | 3878205 | c.303T>C | synonymous_variant | 0.18 |
rpoA | 3878214 | c.294C>T | synonymous_variant | 0.17 |
rpoA | 3878217 | c.291A>G | synonymous_variant | 0.18 |
rpoA | 3878247 | c.261G>C | synonymous_variant | 0.2 |
rpoA | 3878250 | c.258C>G | synonymous_variant | 0.2 |
rpoA | 3878264 | p.Ser82Gly | missense_variant | 0.19 |
rpoA | 3878271 | c.237T>C | synonymous_variant | 0.21 |
rpoA | 3878283 | p.Glu75Asp | missense_variant | 0.2 |
rpoA | 3878292 | c.216T>C | synonymous_variant | 0.2 |
rpoA | 3878298 | c.210A>G | synonymous_variant | 0.18 |
rpoA | 3878304 | c.204G>C | synonymous_variant | 0.18 |
rpoA | 3878307 | c.201C>G | synonymous_variant | 0.18 |
rpoA | 3878313 | c.195G>C | synonymous_variant | 0.2 |
rpoA | 3878322 | c.186A>G | synonymous_variant | 0.19 |
rpoA | 3878331 | c.177A>G | synonymous_variant | 0.19 |
rpoA | 3878334 | c.174T>C | synonymous_variant | 0.19 |
rpoA | 3878337 | c.171T>C | synonymous_variant | 0.19 |
rpoA | 3878364 | c.144A>G | synonymous_variant | 0.2 |
rpoA | 3878385 | c.123C>G | synonymous_variant | 0.19 |
rpoA | 3878391 | c.117T>G | synonymous_variant | 0.19 |
rpoA | 3878415 | c.93C>T | synonymous_variant | 0.15 |
clpC1 | 4038965 | c.1740T>C | synonymous_variant | 0.15 |
clpC1 | 4038989 | c.1716T>C | synonymous_variant | 0.15 |
clpC1 | 4038997 | c.1708T>C | synonymous_variant | 0.17 |
clpC1 | 4039022 | c.1683A>G | synonymous_variant | 0.18 |
clpC1 | 4039037 | c.1668T>C | synonymous_variant | 0.18 |
clpC1 | 4039073 | c.1632C>G | synonymous_variant | 0.16 |
clpC1 | 4039661 | c.1044T>G | synonymous_variant | 0.17 |
clpC1 | 4039664 | c.1041G>C | synonymous_variant | 0.17 |
clpC1 | 4039694 | c.1011G>C | synonymous_variant | 0.16 |
clpC1 | 4039742 | c.963C>T | synonymous_variant | 0.15 |
embC | 4240831 | c.969T>G | synonymous_variant | 0.15 |
embC | 4240936 | c.1074A>G | synonymous_variant | 0.15 |
embC | 4240951 | c.1089C>G | synonymous_variant | 0.16 |
embC | 4240954 | p.Ile364Met | missense_variant | 0.16 |
embC | 4241086 | c.1224G>C | synonymous_variant | 0.14 |
embC | 4241095 | c.1233C>T | synonymous_variant | 0.16 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 0.99 |
embB | 4248199 | c.1686A>T | synonymous_variant | 0.14 |
embB | 4248220 | c.1707A>T | synonymous_variant | 0.15 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407990 | c.213A>G | synonymous_variant | 1.0 |