Rv0006 - c.286C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
44 Sensitive
0 RR-TB
20 HR-TB
7 MDR-TB
1 Pre-XDR-TB
3 XDR-TB
37 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.2.1;lineage4.3.4.1 | 1 |
| lineage4.9 | 69 |
| La3;lineage2.1;lineage4.9 | 1 |
| La1.7;M.canetti;lineage4.9 | 3 |
| lineage4 | 4 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| lineage6.1.3 | 1 |
| lineage4.1.2.1 | 8 |
| La3;lineage4.9 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| lineage4.3.2.1 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| M.canetti;lineage2.2 | 2 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| lineage4.1;lineage4.9 | 1 |
| lineage3.1.2.1 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| M.canetti;lineage4.9 | 3 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| lineage3.1;lineage9 | 1 |
| lineage4.9.1 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage2.2.1 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| La1.7;lineage4.2 | 1 |
| La1.6 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 112 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR1034680 | Pre-XDR-TB | lineage4.1.2.1;lineage4.3.4.1 | co | ERR363500 | Sensitive | lineage4.9 | None | ERR4819241 | Other | lineage4.9 | None | SRR26399239 | Sensitive | lineage4.9 | None | ERR363453 | Sensitive | lineage4.9 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | ERR369163 | Sensitive | lineage4.9 | None | ERR363490 | Sensitive | lineage4.9 | None | ERR363437 | Sensitive | lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | ERR363426 | Sensitive | lineage4.9 | None | SRR6046897 | Sensitive | lineage4.9 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | SRR11662694 | Other | lineage4.9 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR363449 | Sensitive | lineage4.9 | None | ERR4178226 | Sensitive | lineage4 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR349299 | Other | lineage4.9 | None | ERR9787153 | Other | lineage6.1.3 | None | SRR3675260 | Sensitive | lineage4.9 | None | ERR363509 | Sensitive | lineage4.9 | None | ERR363499 | Sensitive | lineage4.9 | None | ERR9786384 | Sensitive | lineage4.1.2.1 | None | ERR4817731 | HR-TB | lineage4.9 | None | ERR4816478 | HR-TB | lineage4 | None | ERR176643 | Other | La3;lineage4.9 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR369160 | Sensitive | lineage4.9 | None | SRR6046594 | Sensitive | lineage4.9 | None | ERR176751 | Other | lineage4.9 | None | SRR6045050 | Sensitive | lineage4.3.2.1 | None | ERR363447 | Other | lineage4.9 | None | SRR6045706 | Sensitive | lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR373946 | Sensitive | lineage4.9 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | ERR369159 | Sensitive | lineage4.9 | None | ERR349330 | Sensitive | lineage4.9 | None | ERR363446 | Sensitive | lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | SRR6045503 | Sensitive | lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | ERR1034683 | MDR-TB | lineage4.1.2.1 | co | ERR3283042 | Other | lineage4.9 | None | ERR4818929 | HR-TB | lineage4.9 | None | ERR369162 | Other | lineage4.9 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | ERR11252736 | Other | lineage4.9 | None | SRR19241804 | MDR-TB | lineage4.1.2.1 | None | ERR369158 | Other | lineage4.9 | None | ERR4796980 | Sensitive | lineage3.1.2.1 | in | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR363506 | Sensitive | lineage4.9 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4.9 | None | SRR19241808 | MDR-TB | lineage4.1.2.1 | None | SRR19241809 | MDR-TB | lineage4.1.2.1 | None | ERR363479 | Sensitive | lineage4.9 | None | ERR349265 | Other | lineage4.9 | None | ERR373945 | Sensitive | lineage4.9 | None | ERR6865502 | Sensitive | lineage4 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR4815441 | HR-TB | lineage4.9 | None | SRR6046802 | Other | lineage4.9 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | ERR349298 | Sensitive | lineage4.9 | None | ERR323037 | Other | lineage4.9 | None | ERR4819877 | HR-TB | lineage4.9 | None | SRR29096107 | Sensitive | lineage4.9 | None | SRR19241813 | MDR-TB | lineage4.1.2.1 | None | ERR363445 | Other | lineage4.9 | None | ERR363502 | Other | lineage4.9 | None | SRR6046485 | Other | lineage4.9 | None | ERR349296 | Sensitive | lineage4.9 | None | ERR736831 | Other | lineage4.9 | None | ERR363456 | Sensitive | lineage4.9 | None | ERR212033 | Other | lineage4.9 | None | ERR349264 | Sensitive | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | ERR4819422 | HR-TB | lineage4.9 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | SRR6045555 | Other | lineage4.9 | None | SRR25827418 | XDR-TB | lineage3.1;lineage9 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR369151 | Other | lineage4.9 | None | ERR363498 | Sensitive | lineage4.9 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR3675265 | Other | lineage4 | None | ERR4820773 | HR-TB | lineage4.9 | None | ERR4178309 | Other | lineage4.1.2.1 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR245758 | Other | lineage4.9.1 | None | ERR363474 | Sensitive | lineage4.9 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | SRR6044942 | HR-TB | lineage4.9 | None | SRR6045371 | Other | lineage4.9 | None | SRR26399265 | Other | lineage2.2.1 | None | ERR4816656 | Other | lineage4.9 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | ERR373947 | Other | lineage4.9 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR11268038 | Other | La1.6 | None | SRR6045233 | Other | M.canetti;lineage4.9 | None |
|---|
