Run ID: ERR245758
Sample name:
Date: 2024-04-15T04:13:42.968425
Number of reads: 9797143
Percentage reads mapped: 82.53
Median coverage: 163.0
Strain: lineage4.9.1
Spoligotype:
Drug-resistance: Other
Lineage | Family | RDs | Frequency |
---|---|---|---|
lineage4.9.1 | Euro-American (H37Rv-like) | None | 0.96 |
lineage4 | Euro-American | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | None | 1.0 |
Drug | Resistance | Supporting mutations | WHO confidence | Comment |
---|---|---|---|---|
rifampicin | ||||
isoniazid | ||||
ethambutol | ||||
pyrazinamide | ||||
streptomycin | rrs | n.462C>T | Uncertain significance | Mutation from literature |
fluoroquinolones | ||||
moxifloxacin | ||||
ofloxacin | ||||
levofloxacin | ||||
ciprofloxacin | ||||
aminoglycosides | ||||
amikacin | ||||
capreomycin | ||||
kanamycin | ||||
cycloserine | ||||
ethionamide | ||||
clofazimine | ||||
para-aminosalicylic_acid | ||||
delamanid | ||||
bedaquiline | ||||
linezolid |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs | Confidence | Comment |
---|---|---|---|---|---|---|---|
rrs | 1472307 | n.462C>T | non_coding_transcript_exon_variant | 0.21 | streptomycin | Uncertain significance | Mutation from literature |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs | Confidence |
---|---|---|---|---|---|---|
gyrB | 6917 | p.His560Tyr | missense_variant | 0.99 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 | levofloxacin | Not assoc w R |
moxifloxacin | Not assoc w R | |||||
gyrA | 7394 | c.93T>C | synonymous_variant | 0.16 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | ||||||
gyrA | 7547 | c.246C>T | synonymous_variant | 0.15 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 7559 | c.258G>C | synonymous_variant | 0.19 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 7585 | p.Ser95Thr | missense_variant | 0.22 | levofloxacin | Not assoc w R |
moxifloxacin | Not assoc w R | |||||
gyrA | 7587 | c.286C>T | synonymous_variant | 0.22 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 7601 | c.300C>G | synonymous_variant | 0.24 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 7607 | c.306C>G | synonymous_variant | 0.24 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 7625 | c.324G>C | synonymous_variant | 0.14 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7821 | c.520C>T | synonymous_variant | 0.13 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 8324 | c.1023T>C | synonymous_variant | 0.15 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8561 | c.1260A>C | synonymous_variant | 0.14 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 8603 | c.1302A>G | synonymous_variant | 0.14 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 8624 | c.1323G>T | synonymous_variant | 0.14 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 8633 | c.1332C>G | synonymous_variant | 0.14 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8636 | c.1335A>C | synonymous_variant | 0.13 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 8642 | c.1341A>G | synonymous_variant | 0.14 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8672 | c.1371A>G | synonymous_variant | 0.15 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 8693 | c.1392T>C | synonymous_variant | 0.17 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8705 | c.1404C>T | synonymous_variant | 0.14 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 8706 | c.1405C>T | synonymous_variant | 0.15 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8711 | c.1410A>C | synonymous_variant | 0.15 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8714 | c.1413A>G | synonymous_variant | 0.15 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8978 | c.1677C>T | synonymous_variant | 0.85 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 8983 | p.Cys561Ser | missense_variant | 0.13 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8987 | c.1686C>G | synonymous_variant | 0.14 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8996 | c.1695T>C | synonymous_variant | 0.14 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8998 | p.Leu566Trp | missense_variant | 0.14 | levofloxacin | Uncertain significance |
moxifloxacin | Uncertain significance | |||||
gyrA | 9023 | c.1722A>C | synonymous_variant | 0.18 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 9029 | c.1728T>C | synonymous_variant | 0.16 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 9035 | c.1734G>C | synonymous_variant | 0.14 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | ||||||
gyrA | 9038 | c.1737C>G | synonymous_variant | 0.13 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 9080 | c.1779G>C | synonymous_variant | 0.14 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 9101 | c.1800A>G | synonymous_variant | 0.13 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 9119 | c.1818A>G | synonymous_variant | 0.15 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 9143 | c.1842T>C | synonymous_variant | 0.13 | levofloxacin | Not assoc w R |
moxifloxacin | Not assoc w R | |||||
gyrA | 9182 | c.1881T>C | synonymous_variant | 0.13 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 9230 | c.1929T>C | synonymous_variant | 0.14 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 9233 | c.1932C>G | synonymous_variant | 0.13 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 9236 | c.1935G>C | synonymous_variant | 0.13 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 9242 | c.1941A>G | synonymous_variant | 0.14 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 9252 | p.Val651Ile | missense_variant | 0.12 | levofloxacin | Uncertain significance |
moxifloxacin | Uncertain significance | |||||
ccsA | 619630 | c.-261C>G | upstream_gene_variant | 0.17 | capreomycin | |
amikacin | ||||||
kanamycin | ||||||
ccsA | 619634 | c.-257T>G | upstream_gene_variant | 0.17 | capreomycin | |
amikacin | ||||||
kanamycin | ||||||
ccsA | 619654 | c.-237A>G | upstream_gene_variant | 0.18 | capreomycin | |
amikacin | ||||||
kanamycin | ||||||
ccsA | 619669 | c.-222G>C | upstream_gene_variant | 0.17 | capreomycin | |
amikacin | ||||||
kanamycin | ||||||
ccsA | 619672 | c.-219A>C | upstream_gene_variant | 0.21 | capreomycin | |
amikacin | ||||||
kanamycin | ||||||
Rv0565c | 656307 | c.1164G>C | synonymous_variant | 0.13 | ethionamide | |
hadA | 731774 | c.-156T>C | upstream_gene_variant | 0.12 | isoniazid | |
hadA | 731789 | c.-141A>G | upstream_gene_variant | 0.18 | isoniazid | |
hadA | 731801 | c.-129C>G | upstream_gene_variant | 0.16 | isoniazid | |
hadA | 731807 | c.-123C>T | upstream_gene_variant | 0.17 | isoniazid | |
hadA | 731816 | c.-114G>C | upstream_gene_variant | 0.15 | isoniazid | |
hadA | 731817 | c.-113C>A | upstream_gene_variant | 0.16 | isoniazid | |
hadA | 731843 | c.-87T>C | upstream_gene_variant | 0.15 | isoniazid | |
hadA | 732396 | p.Gly156Ala | missense_variant | 0.14 | isoniazid | |
hadA | 732398 | p.Ala157Thr | missense_variant | 0.14 | isoniazid | |
rpoB | 759606 | c.-201T>C | upstream_gene_variant | 0.15 | rifampicin | |
rpoB | 760091 | c.285G>C | synonymous_variant | 0.13 | rifampicin | Not assoc w R - Interim |
rpoB | 760101 | c.295T>C | synonymous_variant | 0.15 | rifampicin | Not assoc w R - Interim |
rpoB | 760112 | c.306T>C | synonymous_variant | 0.14 | rifampicin | |
rpoB | 760181 | c.375T>C | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoB | 760184 | c.378A>G | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoB | 760196 | c.390C>G | synonymous_variant | 0.15 | rifampicin | Not assoc w R - Interim |
rpoB | 760235 | c.429T>C | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoB | 760259 | c.453C>T | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoB | 760283 | c.477G>C | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoB | 760307 | c.501T>C | synonymous_variant | 0.17 | rifampicin | |
rpoB | 760313 | c.507G>C | synonymous_variant | 0.16 | rifampicin | |
rpoB | 760331 | c.525G>T | synonymous_variant | 0.14 | rifampicin | |
rpoB | 760340 | c.534G>C | synonymous_variant | 0.14 | rifampicin | |
rpoB | 760361 | c.555T>C | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoB | 760376 | p.Asp190Glu | missense_variant | 0.15 | rifampicin | Uncertain significance |
rpoB | 760380 | p.Thr192Leu | missense_variant | 0.14 | rifampicin | |
rpoB | 760406 | c.600G>C | synonymous_variant | 0.15 | rifampicin | |
rpoB | 760415 | c.609C>T | synonymous_variant | 0.15 | rifampicin | Not assoc w R - Interim |
rpoB | 760424 | c.618C>G | synonymous_variant | 0.14 | rifampicin | Not assoc w R - Interim |
rpoB | 760430 | c.624T>C | synonymous_variant | 0.15 | rifampicin | Not assoc w R - Interim |
rpoB | 760916 | c.1110C>G | synonymous_variant | 0.15 | rifampicin | |
rpoB | 760919 | c.1113C>G | synonymous_variant | 0.15 | rifampicin | |
rpoB | 760925 | c.1119T>C | synonymous_variant | 0.15 | rifampicin | |
rpoB | 760938 | c.1132C>T | synonymous_variant | 0.13 | rifampicin | |
rpoB | 761150 | c.1344A>C | synonymous_variant | 0.13 | rifampicin | Not assoc w R - Interim |
rpoB | 761165 | c.1359G>C | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoB | 761180 | c.1374A>C | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoB | 761189 | c.1383T>G | synonymous_variant | 0.2 | rifampicin | |
rpoB | 761249 | c.1443A>G | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoB | 761255 | c.1449T>G | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoB | 761261 | c.1455G>T | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoB | 761264 | c.1458C>G | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoB | 761282 | c.1476C>T | synonymous_variant | 0.19 | rifampicin | |
rpoB | 761300 | c.1494G>C | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoB | 761327 | c.1521A>G | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoB | 761492 | c.1686G>C | synonymous_variant | 0.16 | rifampicin | |
rpoB | 761504 | c.1698C>G | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoB | 761510 | c.1704T>C | synonymous_variant | 0.17 | rifampicin | |
rpoB | 761531 | c.1725C>G | synonymous_variant | 0.2 | rifampicin | |
rpoB | 761537 | c.1731C>G | synonymous_variant | 0.2 | rifampicin | Not assoc w R - Interim |
rpoB | 761561 | c.1755C>G | synonymous_variant | 0.19 | rifampicin | |
rpoB | 761564 | c.1758G>C | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoB | 761570 | c.1764T>C | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoB | 761573 | c.1767C>G | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoB | 761579 | c.1773G>C | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoB | 761606 | c.1800C>G | synonymous_variant | 0.16 | rifampicin | |
rpoB | 761612 | c.1806G>C | synonymous_variant | 0.15 | rifampicin | Not assoc w R - Interim |
rpoB | 761615 | c.1809A>C | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoB | 761636 | c.1830G>T | synonymous_variant | 0.2 | rifampicin | Not assoc w R - Interim |
rpoB | 761645 | c.1839C>G | synonymous_variant | 0.2 | rifampicin | Not assoc w R - Interim |
rpoB | 761648 | c.1842T>C | synonymous_variant | 0.21 | rifampicin | |
rpoB | 761657 | c.1851C>G | synonymous_variant | 0.23 | rifampicin | Not assoc w R - Interim |
rpoB | 761690 | c.1884G>C | synonymous_variant | 0.13 | rifampicin | |
rpoB | 761972 | c.2166C>T | synonymous_variant | 0.14 | rifampicin | Not assoc w R - Interim |
rpoB | 762014 | c.2208C>T | synonymous_variant | 0.18 | rifampicin | |
rpoB | 762053 | c.2247T>C | synonymous_variant | 0.15 | rifampicin | Not assoc w R - Interim |
rpoB | 762101 | c.2295C>G | synonymous_variant | 0.13 | rifampicin | Not assoc w R - Interim |
rpoB | 762140 | c.2334G>C | synonymous_variant | 0.13 | rifampicin | |
rpoB | 762143 | c.2337T>C | synonymous_variant | 0.14 | rifampicin | |
rpoB | 762149 | c.2343G>C | synonymous_variant | 0.15 | rifampicin | Not assoc w R - Interim |
rpoB | 762158 | c.2352G>C | synonymous_variant | 0.14 | rifampicin | Not assoc w R - Interim |
rpoB | 762167 | c.2361T>C | synonymous_variant | 0.15 | rifampicin | Not assoc w R - Interim |
rpoB | 762176 | c.2370T>G | synonymous_variant | 0.13 | rifampicin | |
rpoB | 762185 | c.2379G>C | synonymous_variant | 0.14 | rifampicin | Not assoc w R - Interim |
rpoB | 762218 | c.2412T>G | synonymous_variant | 0.16 | rifampicin | |
rpoB | 762233 | c.2427G>C | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoB | 762284 | c.2478G>C | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoB | 762293 | c.2487T>C | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoB | 762317 | c.2511A>G | synonymous_variant | 0.14 | rifampicin | Not assoc w R - Interim |
rpoB | 762329 | c.2523G>C | synonymous_variant | 0.14 | rifampicin | Not assoc w R - Interim |
rpoB | 762488 | c.2682G>C | synonymous_variant | 0.13 | rifampicin | Not assoc w R - Interim |
rpoC | 762509 | c.-861T>G | upstream_gene_variant | 0.14 | rifampicin | |
rpoB | 762510 | c.2704_2706delGCCinsCG | frameshift_variant&missense_variant | 0.14 | rifampicin | |
rpoC | 762533 | c.-837T>C | upstream_gene_variant | 0.16 | rifampicin | |
rpoC | 762536 | c.-834T>C | upstream_gene_variant | 0.15 | rifampicin | |
rpoC | 762537 | c.-833T>C | upstream_gene_variant | 0.15 | rifampicin | |
rpoC | 762545 | c.-825C>G | upstream_gene_variant | 0.14 | rifampicin | |
rpoB | 762827 | c.3021G>C | synonymous_variant | 0.23 | rifampicin | Not assoc w R - Interim |
rpoB | 762836 | c.3030C>T | synonymous_variant | 0.28 | rifampicin | Not assoc w R - Interim |
rpoC | 762839 | c.-531G>A | upstream_gene_variant | 0.32 | rifampicin | |
rpoB | 762857 | c.3051C>G | synonymous_variant | 0.26 | rifampicin | Not assoc w R - Interim |
rpoB | 762868 | p.Tyr1021Phe | missense_variant | 0.2 | rifampicin | |
rpoB | 762929 | c.3123G>C | synonymous_variant | 0.21 | rifampicin | Not assoc w R - Interim |
rpoB | 762962 | c.3156C>T | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoB | 762995 | c.3189G>T | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoB | 763028 | c.3222T>C | synonymous_variant | 0.21 | rifampicin | Not assoc w R - Interim |
rpoB | 763031 | c.3225T>G | synonymous_variant | 0.2 | rifampicin | Not assoc w R - Interim |
rpoB | 763034 | c.3228C>G | synonymous_variant | 0.21 | rifampicin | Not assoc w R - Interim |
rpoB | 763040 | c.3234C>G | synonymous_variant | 0.22 | rifampicin | Not assoc w R - Interim |
rpoB | 763070 | c.3264T>C | synonymous_variant | 0.21 | rifampicin | Not assoc w R - Interim |
rpoC | 763076 | c.-294C>G | upstream_gene_variant | 0.2 | rifampicin | |
rpoB | 763085 | c.3279C>G | synonymous_variant | 0.21 | rifampicin | Not assoc w R - Interim |
rpoB | 763115 | c.3309T>C | synonymous_variant | 0.23 | rifampicin | Not assoc w R - Interim |
rpoB | 763127 | c.3321G>C | synonymous_variant | 0.24 | rifampicin | Not assoc w R - Interim |
rpoC | 763158 | c.-212C>T | upstream_gene_variant | 0.19 | rifampicin | |
rpoB | 763166 | c.3360A>G | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoC | 763169 | c.-201A>G | upstream_gene_variant | 0.17 | rifampicin | |
rpoC | 763181 | c.-189G>C | upstream_gene_variant | 0.15 | rifampicin | |
rpoC | 763187 | c.-183C>G | upstream_gene_variant | 0.15 | rifampicin | |
rpoB | 763238 | c.3432T>C | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoC | 763250 | c.-120C>T | upstream_gene_variant | 0.14 | rifampicin | |
rpoC | 763253 | c.-117G>C | upstream_gene_variant | 0.13 | rifampicin | |
rpoC | 763411 | c.42T>G | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoC | 763414 | c.45T>C | synonymous_variant | 0.17 | rifampicin | |
rpoC | 763441 | c.72C>T | synonymous_variant | 0.16 | rifampicin | |
rpoC | 763444 | c.75T>C | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoC | 763456 | c.87A>G | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoC | 763486 | c.117T>G | synonymous_variant | 0.2 | rifampicin | |
rpoC | 763528 | c.159G>A | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoC | 763546 | c.177A>G | synonymous_variant | 0.21 | rifampicin | Not assoc w R - Interim |
rpoC | 763570 | c.201G>T | synonymous_variant | 0.21 | rifampicin | |
rpoC | 763573 | c.204G>C | synonymous_variant | 0.23 | rifampicin | Not assoc w R - Interim |
rpoC | 763594 | c.225C>T | synonymous_variant | 0.23 | rifampicin | Not assoc w R - Interim |
rpoC | 763633 | c.264T>C | synonymous_variant | 0.15 | rifampicin | Not assoc w R - Interim |
rpoC | 763636 | c.267T>C | synonymous_variant | 0.16 | rifampicin | |
rpoC | 763648 | c.279C>T | synonymous_variant | 0.16 | rifampicin | |
rpoC | 763660 | c.291T>G | synonymous_variant | 0.14 | rifampicin | Not assoc w R - Interim |
rpoC | 763765 | c.396T>G | synonymous_variant | 0.14 | rifampicin | Not assoc w R - Interim |
rpoC | 763768 | c.399C>G | synonymous_variant | 0.14 | rifampicin | |
rpoC | 763780 | c.411C>G | synonymous_variant | 0.18 | rifampicin | |
rpoC | 763792 | p.Glu141Asp | missense_variant | 0.19 | rifampicin | |
rpoC | 763801 | c.432C>G | synonymous_variant | 0.2 | rifampicin | |
rpoC | 763807 | c.438T>C | synonymous_variant | 0.21 | rifampicin | Not assoc w R - Interim |
rpoC | 763813 | c.444C>G | synonymous_variant | 0.22 | rifampicin | |
rpoC | 763835 | p.Ala156Met | missense_variant | 0.22 | rifampicin | |
rpoC | 763855 | c.486C>T | synonymous_variant | 0.22 | rifampicin | |
rpoC | 763858 | c.489A>G | synonymous_variant | 0.21 | rifampicin | |
rpoC | 763872 | p.Gly168Ala | missense_variant | 0.2 | rifampicin | |
rpoC | 763876 | p.Glu169Asp | missense_variant | 0.18 | rifampicin | |
rpoC | 763879 | c.510A>G | synonymous_variant | 0.18 | rifampicin | |
rpoC | 763888 | c.519G>C | synonymous_variant | 0.19 | rifampicin | |
rpoC | 763894 | c.525A>G | synonymous_variant | 0.17 | rifampicin | |
rpoC | 763945 | c.576T>C | synonymous_variant | 0.15 | rifampicin | |
rpoC | 763948 | c.579G>A | synonymous_variant | 0.13 | rifampicin | Not assoc w R - Interim |
rpoC | 763951 | c.582G>A | synonymous_variant | 0.14 | rifampicin | |
rpoC | 763960 | c.591T>G | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoC | 763991 | p.Ile208Leu | missense_variant | 0.19 | rifampicin | |
rpoC | 763996 | c.627T>C | synonymous_variant | 0.19 | rifampicin | |
rpoC | 764002 | c.633C>T | synonymous_variant | 0.17 | rifampicin | |
rpoC | 764005 | c.636G>C | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoC | 764011 | c.642T>C | synonymous_variant | 0.18 | rifampicin | |
rpoC | 764024 | c.655T>C | synonymous_variant | 0.17 | rifampicin | |
rpoC | 764044 | c.675T>C | synonymous_variant | 0.17 | rifampicin | |
rpoC | 764059 | c.690G>C | synonymous_variant | 0.2 | rifampicin | |
rpoC | 764077 | c.708C>G | synonymous_variant | 0.21 | rifampicin | |
rpoC | 764083 | c.714A>G | synonymous_variant | 0.22 | rifampicin | |
rpoC | 764098 | c.729A>G | synonymous_variant | 0.23 | rifampicin | Not assoc w R - Interim |
rpoC | 764131 | c.762T>C | synonymous_variant | 0.26 | rifampicin | |
rpoC | 764140 | c.771C>T | synonymous_variant | 0.28 | rifampicin | Not assoc w R - Interim |
rpoC | 764188 | c.819A>G | synonymous_variant | 0.24 | rifampicin | Not assoc w R - Interim |
rpoC | 764194 | p.Glu275Asp | missense_variant | 0.24 | rifampicin | |
rpoC | 764206 | c.837T>C | synonymous_variant | 0.23 | rifampicin | Not assoc w R - Interim |
rpoC | 764218 | c.849C>T | synonymous_variant | 0.19 | rifampicin | |
rpoC | 764278 | c.909A>G | synonymous_variant | 0.14 | rifampicin | Not assoc w R - Interim |
rpoC | 764359 | c.990C>G | synonymous_variant | 0.2 | rifampicin | |
rpoC | 764365 | c.996C>T | synonymous_variant | 0.15 | rifampicin | Not assoc w R - Interim |
rpoC | 764497 | c.1128A>G | synonymous_variant | 0.15 | rifampicin | Not assoc w R - Interim |
rpoC | 764500 | c.1131C>G | synonymous_variant | 0.15 | rifampicin | |
rpoC | 764521 | c.1152T>C | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoC | 764536 | c.1167G>C | synonymous_variant | 0.18 | rifampicin | |
rpoC | 764539 | c.1170C>G | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoC | 764566 | c.1197C>G | synonymous_variant | 0.15 | rifampicin | Not assoc w R - Interim |
rpoC | 764626 | c.1257C>T | synonymous_variant | 0.15 | rifampicin | Not assoc w R - Interim |
rpoC | 764632 | c.1263T>C | synonymous_variant | 0.15 | rifampicin | Not assoc w R - Interim |
rpoC | 764650 | c.1281G>T | synonymous_variant | 0.2 | rifampicin | Not assoc w R - Interim |
rpoC | 764695 | c.1326T>C | synonymous_variant | 0.16 | rifampicin | |
rpoC | 764716 | c.1347G>C | synonymous_variant | 0.13 | rifampicin | Not assoc w R - Interim |
rpoC | 764752 | c.1383G>T | synonymous_variant | 0.21 | rifampicin | |
rpoC | 764761 | c.1392C>T | synonymous_variant | 0.23 | rifampicin | |
rpoC | 764764 | c.1395T>C | synonymous_variant | 0.22 | rifampicin | Not assoc w R - Interim |
rpoC | 764803 | c.1434C>G | synonymous_variant | 0.19 | rifampicin | |
rpoC | 764809 | c.1440C>T | synonymous_variant | 0.18 | rifampicin | Not assoc w R |
rpoC | 764815 | c.1446A>G | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoC | 764824 | c.1455T>C | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoC | 764827 | c.1458G>C | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoC | 764888 | c.1519T>C | synonymous_variant | 0.14 | rifampicin | Not assoc w R - Interim |
rpoC | 764948 | c.1579T>C | synonymous_variant | 0.14 | rifampicin | Not assoc w R - Interim |
rpoC | 764968 | c.1599T>C | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoC | 765076 | c.1707A>G | synonymous_variant | 0.19 | rifampicin | |
rpoC | 765079 | c.1710T>C | synonymous_variant | 0.19 | rifampicin | |
rpoC | 765082 | c.1713G>T | synonymous_variant | 0.18 | rifampicin | |
rpoC | 765100 | c.1731G>C | synonymous_variant | 0.14 | rifampicin | |
rpoC | 765103 | c.1734G>T | synonymous_variant | 0.12 | rifampicin | |
rpoC | 765383 | p.Met672Leu | missense_variant | 0.22 | rifampicin | Uncertain significance |
rpoC | 765404 | p.Leu679Val | missense_variant | 0.19 | rifampicin | |
rpoC | 765409 | c.2040T>C | synonymous_variant | 0.19 | rifampicin | |
rpoC | 765412 | c.2043T>C | synonymous_variant | 0.21 | rifampicin | |
rpoC | 765421 | c.2052C>G | synonymous_variant | 0.22 | rifampicin | Not assoc w R - Interim |
rpoC | 765454 | c.2085C>G | synonymous_variant | 0.21 | rifampicin | Not assoc w R - Interim |
rpoC | 765466 | c.2097C>T | synonymous_variant | 0.2 | rifampicin | |
rpoC | 765478 | c.2109T>C | synonymous_variant | 0.22 | rifampicin | Not assoc w R - Interim |
rpoC | 765493 | c.2124G>C | synonymous_variant | 0.2 | rifampicin | |
rpoC | 765499 | c.2130C>G | synonymous_variant | 0.22 | rifampicin | Not assoc w R - Interim |
rpoC | 765553 | c.2184C>T | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoC | 765556 | c.2187G>C | synonymous_variant | 0.2 | rifampicin | |
rpoC | 765559 | c.2190G>C | synonymous_variant | 0.2 | rifampicin | |
rpoC | 765583 | c.2214G>C | synonymous_variant | 0.2 | rifampicin | |
rpoC | 765613 | p.His748Gln | missense_variant | 0.23 | rifampicin | |
rpoC | 765625 | c.2256C>G | synonymous_variant | 0.21 | rifampicin | Not assoc w R - Interim |
rpoC | 765628 | c.2259G>C | synonymous_variant | 0.2 | rifampicin | Not assoc w R - Interim |
rpoC | 765631 | p.Asp754Glu | missense_variant | 0.2 | rifampicin | |
rpoC | 765655 | c.2286T>A | synonymous_variant | 0.23 | rifampicin | |
rpoC | 765688 | c.2319G>A | synonymous_variant | 0.25 | rifampicin | |
rpoC | 765700 | c.2331T>C | synonymous_variant | 0.24 | rifampicin | Not assoc w R - Interim |
rpoC | 765734 | c.2365T>C | synonymous_variant | 0.21 | rifampicin | Not assoc w R - Interim |
rpoC | 765752 | p.Asp795Ser | missense_variant | 0.14 | rifampicin | |
rpoC | 765772 | c.2403C>G | synonymous_variant | 0.15 | rifampicin | |
rpoC | 765796 | c.2427C>T | synonymous_variant | 0.12 | rifampicin | |
rpoC | 765811 | c.2442T>C | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoC | 765826 | c.2457T>C | synonymous_variant | 0.2 | rifampicin | Not assoc w R - Interim |
rpoC | 765883 | c.2514C>G | synonymous_variant | 0.23 | rifampicin | |
rpoC | 765886 | c.2517C>G | synonymous_variant | 0.23 | rifampicin | |
rpoC | 765892 | c.2523T>C | synonymous_variant | 0.22 | rifampicin | Not assoc w R - Interim |
rpoC | 765928 | c.2559C>G | synonymous_variant | 0.21 | rifampicin | Not assoc w R - Interim |
rpoC | 765937 | c.2568T>C | synonymous_variant | 0.22 | rifampicin | Not assoc w R - Interim |
rpoC | 765947 | c.2578T>C | synonymous_variant | 0.24 | rifampicin | Not assoc w R - Interim |
rpoC | 765979 | c.2610C>G | synonymous_variant | 0.21 | rifampicin | Not assoc w R - Interim |
rpoC | 765982 | c.2613C>T | synonymous_variant | 0.21 | rifampicin | Not assoc w R - Interim |
rpoC | 765994 | c.2625A>T | synonymous_variant | 0.2 | rifampicin | Not assoc w R - Interim |
rpoC | 766010 | c.2641_2642delTCinsAG | synonymous_variant | 0.16 | rifampicin | |
rpoC | 766021 | c.2652G>C | synonymous_variant | 0.14 | rifampicin | |
rpoC | 766027 | c.2658G>C | synonymous_variant | 0.12 | rifampicin | |
rpoC | 766141 | c.2772C>T | synonymous_variant | 0.13 | rifampicin | |
rpoC | 766142 | c.2773C>T | synonymous_variant | 0.13 | rifampicin | Not assoc w R - Interim |
rpoC | 766426 | c.3057C>T | synonymous_variant | 0.16 | rifampicin | |
rpoC | 766447 | c.3078T>C | synonymous_variant | 0.18 | rifampicin | |
rpoC | 766462 | c.3093G>C | synonymous_variant | 0.15 | rifampicin | |
rpoC | 766607 | p.Ile1080Leu | missense_variant | 0.17 | rifampicin | |
rpoC | 766618 | c.3249G>C | synonymous_variant | 0.17 | rifampicin | |
rpoC | 766666 | c.3297C>G | synonymous_variant | 0.15 | rifampicin | |
rpoC | 766672 | c.3303T>C | synonymous_variant | 0.14 | rifampicin | |
rpoC | 766708 | c.3339A>G | synonymous_variant | 0.14 | rifampicin | |
rpoC | 766726 | c.3357T>C | synonymous_variant | 0.16 | rifampicin | |
rpoC | 766738 | c.3369G>C | synonymous_variant | 0.18 | rifampicin | |
rpoC | 766765 | c.3396A>C | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoC | 766774 | c.3405T>C | synonymous_variant | 0.16 | rifampicin | |
rpoC | 766804 | c.3435A>G | synonymous_variant | 0.15 | rifampicin | Not assoc w R - Interim |
rpoC | 766843 | c.3474T>C | synonymous_variant | 0.14 | rifampicin | Not assoc w R - Interim |
rpoC | 766933 | c.3564A>G | synonymous_variant | 0.19 | rifampicin | |
rpoC | 766942 | c.3573C>T | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoC | 766945 | c.3576A>G | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoC | 766972 | c.3603G>C | synonymous_variant | 0.15 | rifampicin | |
rpoC | 766978 | c.3609C>T | synonymous_variant | 0.14 | rifampicin | |
rpoC | 766981 | c.3612T>C | synonymous_variant | 0.14 | rifampicin | |
rpoC | 766996 | c.3627C>T | synonymous_variant | 0.14 | rifampicin | Not assoc w R - Interim |
rpoC | 767020 | c.3651C>G | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoC | 767033 | c.3664_3666delTCGinsAGT | synonymous_variant | 0.16 | rifampicin | |
rpoC | 767059 | c.3690T>G | synonymous_variant | 0.15 | rifampicin | Not assoc w R - Interim |
rpoC | 767062 | c.3693C>A | synonymous_variant | 0.14 | rifampicin | |
rpoC | 767098 | c.3729T>C | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoC | 767119 | c.3750A>G | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoC | 767134 | c.3765C>A | synonymous_variant | 0.21 | rifampicin | |
rpoC | 767149 | c.3780C>G | synonymous_variant | 0.18 | rifampicin | |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 | clofazimine | Not assoc w R |
bedaquiline | Not assoc w R - Interim | |||||
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 | streptomycin | Not assoc w R |
rpsL | 781682 | c.123T>C | synonymous_variant | 0.15 | streptomycin | |
rpsL | 781703 | c.144G>C | synonymous_variant | 0.15 | streptomycin | |
rpsL | 781715 | c.156T>C | synonymous_variant | 0.16 | streptomycin | |
rpsL | 781718 | c.159C>G | synonymous_variant | 0.15 | streptomycin | |
rpsL | 781728 | c.169T>C | synonymous_variant | 0.19 | streptomycin | |
rpsL | 781751 | c.192G>C | synonymous_variant | 0.16 | streptomycin | |
rpsL | 781754 | c.195G>C | synonymous_variant | 0.14 | streptomycin | |
rpsL | 781760 | c.201T>C | synonymous_variant | 0.14 | streptomycin | |
rpsL | 781763 | c.204C>G | synonymous_variant | 0.13 | streptomycin | |
rpsL | 781766 | c.207C>T | synonymous_variant | 0.13 | streptomycin | Not assoc w R - Interim |
rpsL | 781832 | c.273T>C | synonymous_variant | 0.14 | streptomycin | |
rpsL | 781835 | c.276T>C | synonymous_variant | 0.16 | streptomycin | Not assoc w R - Interim |
rpsL | 781841 | c.282C>G | synonymous_variant | 0.17 | streptomycin | |
rpsL | 781865 | c.306G>C | synonymous_variant | 0.16 | streptomycin | |
rpsL | 781868 | c.309T>C | synonymous_variant | 0.16 | streptomycin | |
rpsL | 781871 | c.312G>C | synonymous_variant | 0.18 | streptomycin | |
rpsL | 781929 | p.Gly124Ser | missense_variant | 0.15 | streptomycin | Uncertain significance |
rplC | 800516 | c.-293G>C | upstream_gene_variant | 0.14 | linezolid | |
rplC | 800540 | c.-269T>C | upstream_gene_variant | 0.15 | linezolid | |
rplC | 800546 | c.-263T>A | upstream_gene_variant | 0.15 | linezolid | |
rplC | 800558 | c.-251G>A | upstream_gene_variant | 0.15 | linezolid | |
rplC | 800567 | c.-242A>G | upstream_gene_variant | 0.16 | linezolid | |
rplC | 800582 | c.-227C>G | upstream_gene_variant | 0.16 | linezolid | |
rplC | 800591 | c.-218C>T | upstream_gene_variant | 0.16 | linezolid | |
rplC | 800600 | c.-209G>C | upstream_gene_variant | 0.16 | linezolid | |
rplC | 800612 | c.-197A>G | upstream_gene_variant | 0.15 | linezolid | |
rplC | 800648 | c.-161A>T | upstream_gene_variant | 0.17 | linezolid | |
sigE | 1365003 | c.591T>C | synonymous_variant | 0.13 | pyrazinamide | |
sigE | 1365006 | c.594T>C | synonymous_variant | 0.14 | pyrazinamide | |
sigE | 1365015 | c.603G>C | synonymous_variant | 0.16 | pyrazinamide | |
sigE | 1365036 | c.624T>C | synonymous_variant | 0.15 | pyrazinamide | |
sigE | 1365042 | c.630G>C | synonymous_variant | 0.14 | pyrazinamide | |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 | streptomycin | |
kanamycin | ||||||
capreomycin | ||||||
amikacin | ||||||
rrs | 1471923 | n.78T>C | non_coding_transcript_exon_variant | 0.18 | streptomycin | Uncertain significance |
kanamycin | Uncertain significance | |||||
capreomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1471925 | n.80T>C | non_coding_transcript_exon_variant | 0.18 | streptomycin | |
kanamycin | Uncertain significance | |||||
capreomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1471932 | n.87A>G | non_coding_transcript_exon_variant | 0.16 | streptomycin | |
kanamycin | ||||||
capreomycin | ||||||
amikacin | ||||||
rrs | 1471934 | n.89A>G | non_coding_transcript_exon_variant | 0.17 | streptomycin | Uncertain significance |
kanamycin | ||||||
capreomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1471970 | n.125G>A | non_coding_transcript_exon_variant | 0.12 | streptomycin | Uncertain significance |
kanamycin | Uncertain significance | |||||
capreomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1472040 | n.195T>C | non_coding_transcript_exon_variant | 0.13 | streptomycin | |
kanamycin | ||||||
capreomycin | ||||||
amikacin | ||||||
rrs | 1472061 | n.216A>T | non_coding_transcript_exon_variant | 0.15 | streptomycin | |
kanamycin | Uncertain significance | |||||
capreomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1472075 | n.230A>G | non_coding_transcript_exon_variant | 0.15 | streptomycin | |
kanamycin | Uncertain significance | |||||
capreomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1472108 | n.263C>T | non_coding_transcript_exon_variant | 0.19 | streptomycin | Uncertain significance |
kanamycin | Uncertain significance | |||||
capreomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1472969 | n.1124A>G | non_coding_transcript_exon_variant | 0.16 | streptomycin | Uncertain significance |
kanamycin | Uncertain significance | |||||
capreomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1472970 | n.1125C>G | non_coding_transcript_exon_variant | 0.15 | streptomycin | |
kanamycin | Uncertain significance | |||||
capreomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1472977 | n.1132G>C | non_coding_transcript_exon_variant | 0.15 | streptomycin | |
kanamycin | Uncertain significance | |||||
capreomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1472978 | n.1133T>C | non_coding_transcript_exon_variant | 0.16 | streptomycin | Uncertain significance |
kanamycin | Uncertain significance | |||||
capreomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1473105 | n.1260G>A | non_coding_transcript_exon_variant | 0.18 | streptomycin | |
kanamycin | Uncertain significance | |||||
capreomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1473123 | n.1278delAinsTT | non_coding_transcript_exon_variant | 0.17 | streptomycin | |
kanamycin | ||||||
capreomycin | ||||||
amikacin | ||||||
rrs | 1473290 | n.1445C>T | non_coding_transcript_exon_variant | 0.17 | streptomycin | |
kanamycin | Uncertain significance | |||||
capreomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrl | 1473756 | n.99G>A | non_coding_transcript_exon_variant | 0.17 | capreomycin | |
linezolid | ||||||
rrl | 1473758 | n.101G>T | non_coding_transcript_exon_variant | 0.17 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1473806 | n.149C>T | non_coding_transcript_exon_variant | 0.2 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1473813 | n.156C>T | non_coding_transcript_exon_variant | 0.21 | capreomycin | |
linezolid | ||||||
rrl | 1473839 | n.182G>T | non_coding_transcript_exon_variant | 0.2 | capreomycin | |
linezolid | ||||||
rrl | 1473877 | n.220G>A | non_coding_transcript_exon_variant | 0.21 | capreomycin | |
linezolid | ||||||
rrl | 1473898 | n.241C>T | non_coding_transcript_exon_variant | 0.18 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1473899 | n.242A>C | non_coding_transcript_exon_variant | 0.18 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1473937 | n.280C>T | non_coding_transcript_exon_variant | 0.15 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1473995 | n.338G>T | non_coding_transcript_exon_variant | 0.13 | capreomycin | |
linezolid | ||||||
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 0.14 | capreomycin | Not assoc w R |
linezolid | Not assoc w R | |||||
rrl | 1474009 | n.352A>G | non_coding_transcript_exon_variant | 0.16 | capreomycin | |
linezolid | ||||||
rrl | 1474012 | n.355C>T | non_coding_transcript_exon_variant | 0.17 | capreomycin | |
linezolid | ||||||
rrl | 1474051 | n.394T>C | non_coding_transcript_exon_variant | 0.16 | capreomycin | |
linezolid | ||||||
rrl | 1474056 | n.399T>C | non_coding_transcript_exon_variant | 0.17 | capreomycin | |
linezolid | ||||||
rrl | 1474061 | n.404T>C | non_coding_transcript_exon_variant | 0.16 | capreomycin | |
linezolid | ||||||
rrl | 1474071 | n.414G>A | non_coding_transcript_exon_variant | 0.18 | capreomycin | |
linezolid | ||||||
rrl | 1474102 | n.445T>C | non_coding_transcript_exon_variant | 0.18 | capreomycin | |
linezolid | ||||||
rrl | 1474103 | n.446A>T | non_coding_transcript_exon_variant | 0.17 | capreomycin | |
linezolid | ||||||
rrl | 1474111 | n.454T>C | non_coding_transcript_exon_variant | 0.18 | capreomycin | |
linezolid | ||||||
rrl | 1474112 | n.455T>A | non_coding_transcript_exon_variant | 0.17 | capreomycin | |
linezolid | ||||||
rrl | 1474140 | n.483C>T | non_coding_transcript_exon_variant | 0.19 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1474151 | n.494C>T | non_coding_transcript_exon_variant | 0.16 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1474181 | n.524C>T | non_coding_transcript_exon_variant | 0.21 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1474376 | n.719T>C | non_coding_transcript_exon_variant | 0.14 | capreomycin | |
linezolid | ||||||
rrl | 1474627 | n.970G>A | non_coding_transcript_exon_variant | 0.21 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1474632 | n.975G>T | non_coding_transcript_exon_variant | 0.22 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1474639 | n.982G>A | non_coding_transcript_exon_variant | 0.22 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1474717 | n.1060A>T | non_coding_transcript_exon_variant | 0.18 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1474760 | n.1103A>G | non_coding_transcript_exon_variant | 0.23 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 0.24 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1474812 | n.1155G>A | non_coding_transcript_exon_variant | 0.22 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1474831 | n.1174A>G | non_coding_transcript_exon_variant | 0.22 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1474991 | n.1334T>C | non_coding_transcript_exon_variant | 0.14 | capreomycin | |
linezolid | ||||||
rrl | 1474995 | n.1338T>G | non_coding_transcript_exon_variant | 0.16 | capreomycin | |
linezolid | ||||||
rrl | 1475005 | n.1348C>T | non_coding_transcript_exon_variant | 0.19 | capreomycin | |
linezolid | ||||||
rrl | 1475013 | n.1356G>A | non_coding_transcript_exon_variant | 0.21 | capreomycin | |
linezolid | ||||||
rrl | 1475027 | n.1370G>T | non_coding_transcript_exon_variant | 0.24 | capreomycin | |
linezolid | ||||||
rrl | 1475028 | n.1371G>T | non_coding_transcript_exon_variant | 0.24 | capreomycin | |
linezolid | ||||||
rrl | 1475061 | n.1404C>T | non_coding_transcript_exon_variant | 0.27 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1475088 | n.1431A>T | non_coding_transcript_exon_variant | 0.22 | capreomycin | |
linezolid | ||||||
rrl | 1475206 | n.1549C>T | non_coding_transcript_exon_variant | 0.25 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1475209 | n.1552G>C | non_coding_transcript_exon_variant | 0.24 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1475249 | n.1592T>C | non_coding_transcript_exon_variant | 0.2 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1475252 | n.1595C>T | non_coding_transcript_exon_variant | 0.2 | capreomycin | |
linezolid | ||||||
rrl | 1475266 | n.1609T>C | non_coding_transcript_exon_variant | 0.2 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1475267 | n.1610G>A | non_coding_transcript_exon_variant | 0.2 | capreomycin | |
linezolid | ||||||
rrl | 1475275 | n.1618C>T | non_coding_transcript_exon_variant | 0.19 | capreomycin | |
linezolid | ||||||
rrl | 1475276 | n.1619T>C | non_coding_transcript_exon_variant | 0.19 | capreomycin | |
linezolid | ||||||
rrl | 1475291 | n.1634A>C | non_coding_transcript_exon_variant | 0.2 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1475313 | n.1656G>A | non_coding_transcript_exon_variant | 0.18 | capreomycin | |
linezolid | ||||||
rrl | 1475315 | n.1658A>T | non_coding_transcript_exon_variant | 0.19 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1475355 | n.1698C>T | non_coding_transcript_exon_variant | 0.25 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1475369 | n.1712G>T | non_coding_transcript_exon_variant | 0.23 | capreomycin | |
linezolid | ||||||
rrl | 1475402 | n.1745C>T | non_coding_transcript_exon_variant | 0.26 | capreomycin | |
linezolid | ||||||
rrl | 1475419 | n.1762C>T | non_coding_transcript_exon_variant | 0.23 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1475429 | n.1772G>A | non_coding_transcript_exon_variant | 0.27 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1475436 | n.1779C>T | non_coding_transcript_exon_variant | 0.27 | capreomycin | |
linezolid | ||||||
rrl | 1475599 | n.1942A>G | non_coding_transcript_exon_variant | 0.21 | capreomycin | |
linezolid | Uncertain significance | |||||
rrl | 1475608 | n.1951T>C | non_coding_transcript_exon_variant | 0.2 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1475638 | n.1981C>T | non_coding_transcript_exon_variant | 0.21 | capreomycin | |
linezolid | ||||||
rrl | 1475642 | n.1985T>C | non_coding_transcript_exon_variant | 0.2 | capreomycin | |
linezolid | ||||||
rrl | 1475657 | n.2000A>G | non_coding_transcript_exon_variant | 0.15 | capreomycin | |
linezolid | ||||||
rrl | 1475659 | n.2002G>T | non_coding_transcript_exon_variant | 0.14 | capreomycin | |
linezolid | ||||||
rrl | 1475761 | n.2104_2106delCGCinsGT | non_coding_transcript_exon_variant | 0.16 | capreomycin | |
linezolid | ||||||
rrl | 1475765 | n.2111delG | non_coding_transcript_exon_variant | 0.15 | capreomycin | |
linezolid | ||||||
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 0.26 | capreomycin | |
linezolid | ||||||
rrl | 1475988 | n.2331A>G | non_coding_transcript_exon_variant | 0.19 | capreomycin | Not assoc w R |
linezolid | Uncertain significance | |||||
rrl | 1476115 | n.2458T>C | non_coding_transcript_exon_variant | 0.14 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1476117 | n.2460G>C | non_coding_transcript_exon_variant | 0.14 | capreomycin | |
linezolid | ||||||
rrl | 1476214 | n.2557G>T | non_coding_transcript_exon_variant | 0.2 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1476215 | n.2558C>T | non_coding_transcript_exon_variant | 0.2 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1476224 | n.2567A>G | non_coding_transcript_exon_variant | 0.22 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1476281 | n.2624T>C | non_coding_transcript_exon_variant | 0.23 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1476583 | n.2926G>A | non_coding_transcript_exon_variant | 0.14 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.14 | capreomycin | Not assoc w R |
linezolid | Uncertain significance | |||||
rrl | 1476597 | n.2940G>A | non_coding_transcript_exon_variant | 0.16 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1476608 | n.2951C>G | non_coding_transcript_exon_variant | 0.16 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
inhA | 1674618 | c.417C>T | synonymous_variant | 0.15 | ethionamide | |
isoniazid | ||||||
inhA | 1674624 | c.423A>T | synonymous_variant | 0.14 | ethionamide | |
isoniazid | ||||||
inhA | 1674654 | c.453G>C | synonymous_variant | 0.13 | ethionamide | |
isoniazid | ||||||
inhA | 1674663 | c.462G>C | synonymous_variant | 0.14 | ethionamide | |
isoniazid | ||||||
rpsA | 1833568 | c.27G>C | synonymous_variant | 0.15 | pyrazinamide | Not assoc w R - Interim |
rpsA | 1833589 | c.48A>T | synonymous_variant | 0.14 | pyrazinamide | |
rpsA | 1833727 | c.186G>C | synonymous_variant | 0.13 | pyrazinamide | |
rpsA | 1833742 | c.201A>G | synonymous_variant | 0.14 | pyrazinamide | |
rpsA | 1833760 | c.219C>T | synonymous_variant | 0.13 | pyrazinamide | Not assoc w R - Interim |
rpsA | 1833771 | p.Asn77Ser | missense_variant | 0.15 | pyrazinamide | |
rpsA | 1833793 | c.252C>T | synonymous_variant | 0.18 | pyrazinamide | |
rpsA | 1833802 | c.261A>G | synonymous_variant | 0.18 | pyrazinamide | |
rpsA | 1833811 | c.270G>T | synonymous_variant | 0.2 | pyrazinamide | |
rpsA | 1833841 | c.300C>G | synonymous_variant | 0.25 | pyrazinamide | |
rpsA | 1833847 | c.306C>G | synonymous_variant | 0.25 | pyrazinamide | |
rpsA | 1833856 | c.315A>G | synonymous_variant | 0.22 | pyrazinamide | |
rpsA | 1833874 | c.333T>C | synonymous_variant | 0.19 | pyrazinamide | |
rpsA | 1833928 | c.387G>C | synonymous_variant | 0.18 | pyrazinamide | |
rpsA | 1833940 | c.399C>G | synonymous_variant | 0.18 | pyrazinamide | |
rpsA | 1833970 | c.429G>C | synonymous_variant | 0.16 | pyrazinamide | |
rpsA | 1833976 | c.435C>T | synonymous_variant | 0.13 | pyrazinamide | |
rpsA | 1834021 | c.480C>T | synonymous_variant | 0.13 | pyrazinamide | |
rpsA | 1834030 | c.489C>G | synonymous_variant | 0.16 | pyrazinamide | |
rpsA | 1834099 | c.558C>G | synonymous_variant | 0.15 | pyrazinamide | |
rpsA | 1834102 | c.561T>G | synonymous_variant | 0.13 | pyrazinamide | |
rpsA | 1834108 | c.567C>G | synonymous_variant | 0.13 | pyrazinamide | |
rpsA | 1834222 | c.681T>C | synonymous_variant | 0.13 | pyrazinamide | |
rpsA | 1834231 | c.690T>C | synonymous_variant | 0.17 | pyrazinamide | |
rpsA | 1834249 | c.708T>C | synonymous_variant | 0.16 | pyrazinamide | |
rpsA | 1834261 | c.720A>G | synonymous_variant | 0.16 | pyrazinamide | Not assoc w R - Interim |
rpsA | 1834264 | c.723G>C | synonymous_variant | 0.16 | pyrazinamide | |
rpsA | 1834288 | c.747C>G | synonymous_variant | 0.14 | pyrazinamide | |
rpsA | 1834294 | c.753G>C | synonymous_variant | 0.14 | pyrazinamide | |
rpsA | 1834297 | c.756C>T | synonymous_variant | 0.14 | pyrazinamide | |
rpsA | 1834303 | c.762T>C | synonymous_variant | 0.14 | pyrazinamide | |
rpsA | 1834306 | c.765T>C | synonymous_variant | 0.13 | pyrazinamide | |
rpsA | 1834348 | c.807T>C | synonymous_variant | 0.21 | pyrazinamide | Not assoc w R - Interim |
rpsA | 1834357 | c.816T>G | synonymous_variant | 0.2 | pyrazinamide | |
rpsA | 1834366 | c.825A>G | synonymous_variant | 0.21 | pyrazinamide | Not assoc w R - Interim |
rpsA | 1834411 | c.870T>C | synonymous_variant | 0.16 | pyrazinamide | |
rpsA | 1834417 | c.876G>C | synonymous_variant | 0.18 | pyrazinamide | |
rpsA | 1834423 | c.882G>C | synonymous_variant | 0.2 | pyrazinamide | |
rpsA | 1834435 | c.894G>C | synonymous_variant | 0.18 | pyrazinamide | |
rpsA | 1834451 | c.910T>C | synonymous_variant | 0.14 | pyrazinamide | |
rpsA | 1834456 | c.915T>G | synonymous_variant | 0.15 | pyrazinamide | |
rpsA | 1834465 | c.924T>C | synonymous_variant | 0.14 | pyrazinamide | |
rpsA | 1834468 | c.927A>G | synonymous_variant | 0.13 | pyrazinamide | |
rpsA | 1834546 | c.1005T>C | synonymous_variant | 0.13 | pyrazinamide | |
rpsA | 1834609 | c.1068T>C | synonymous_variant | 0.18 | pyrazinamide | |
rpsA | 1834633 | c.1092A>G | synonymous_variant | 0.17 | pyrazinamide | |
rpsA | 1834639 | c.1098T>C | synonymous_variant | 0.17 | pyrazinamide | |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 | capreomycin | Not assoc w R |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 0.99 | clofazimine | Not assoc w R |
bedaquiline | Not assoc w R - Interim | |||||
pncA | 2289138 | p.Leu35Arg | missense_variant | 0.99 | pyrazinamide | Not assoc w R - Interim |
kasA | 2517941 | c.-174C>G | upstream_gene_variant | 0.13 | isoniazid | |
kasA | 2518174 | c.60A>G | synonymous_variant | 0.14 | isoniazid | |
kasA | 2518183 | c.69G>A | synonymous_variant | 0.16 | isoniazid | |
kasA | 2518190 | p.Ser26Ala | missense_variant | 0.17 | isoniazid | |
kasA | 2518217 | p.Gly35Ser | missense_variant | 0.16 | isoniazid | |
kasA | 2518220 | c.106C>T | synonymous_variant | 0.17 | isoniazid | |
kasA | 2518234 | c.120G>A | synonymous_variant | 0.15 | isoniazid | |
kasA | 2518506 | p.Ala131Glu | missense_variant | 0.13 | isoniazid | |
kasA | 2518510 | c.396C>T | synonymous_variant | 0.14 | isoniazid | |
kasA | 2518519 | c.405G>C | synonymous_variant | 0.16 | isoniazid | |
kasA | 2518528 | c.414C>G | synonymous_variant | 0.15 | isoniazid | |
kasA | 2518534 | c.420G>C | synonymous_variant | 0.15 | isoniazid | |
kasA | 2518714 | c.600A>T | synonymous_variant | 0.15 | isoniazid | |
kasA | 2518765 | c.651G>C | synonymous_variant | 0.23 | isoniazid | |
kasA | 2518768 | c.654C>T | synonymous_variant | 0.22 | isoniazid | |
kasA | 2518783 | c.669T>C | synonymous_variant | 0.15 | isoniazid | |
kasA | 2518789 | c.675G>T | synonymous_variant | 0.15 | isoniazid | |
kasA | 2518792 | c.678C>G | synonymous_variant | 0.14 | isoniazid | |
kasA | 2518795 | c.681C>T | synonymous_variant | 0.14 | isoniazid | |
Rv2477c | 2783140 | c.903C>G | synonymous_variant | 0.14 | ethambutol | |
moxifloxacin | ||||||
streptomycin | ||||||
levofloxacin | ||||||
kanamycin | ||||||
rifampicin | ||||||
amikacin | ||||||
Rv2477c | 2783158 | c.885A>C | synonymous_variant | 0.14 | ethambutol | Not assoc w R - Interim |
moxifloxacin | ||||||
streptomycin | ||||||
levofloxacin | Not assoc w R - Interim | |||||
kanamycin | Not assoc w R - Interim | |||||
rifampicin | Not assoc w R - Interim | |||||
amikacin | Not assoc w R - Interim | |||||
Rv2477c | 2783628 | p.Ala139Ser | missense_variant | 0.15 | ethambutol | |
moxifloxacin | ||||||
streptomycin | ||||||
levofloxacin | ||||||
kanamycin | ||||||
rifampicin | ||||||
amikacin | ||||||
Rv2477c | 2783656 | c.387G>C | synonymous_variant | 0.14 | ethambutol | |
moxifloxacin | ||||||
streptomycin | ||||||
levofloxacin | ||||||
kanamycin | ||||||
rifampicin | ||||||
amikacin | ||||||
Rv2477c | 2783659 | c.384A>G | synonymous_variant | 0.14 | ethambutol | |
moxifloxacin | ||||||
streptomycin | ||||||
levofloxacin | ||||||
kanamycin | ||||||
rifampicin | ||||||
amikacin | ||||||
Rv2477c | 2783665 | c.378A>G | synonymous_variant | 0.14 | ethambutol | |
moxifloxacin | ||||||
streptomycin | ||||||
levofloxacin | ||||||
kanamycin | ||||||
rifampicin | ||||||
amikacin | ||||||
Rv2477c | 2783680 | c.363G>A | synonymous_variant | 0.15 | ethambutol | |
moxifloxacin | ||||||
streptomycin | ||||||
levofloxacin | ||||||
kanamycin | ||||||
rifampicin | ||||||
amikacin | ||||||
Rv2477c | 2783683 | c.360A>G | synonymous_variant | 0.14 | ethambutol | |
moxifloxacin | ||||||
streptomycin | ||||||
levofloxacin | ||||||
kanamycin | ||||||
rifampicin | ||||||
amikacin | ||||||
Rv2477c | 2783691 | c.352C>T | synonymous_variant | 0.16 | ethambutol | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
streptomycin | Not assoc w R - Interim | |||||
levofloxacin | Not assoc w R - Interim | |||||
kanamycin | Not assoc w R - Interim | |||||
rifampicin | Not assoc w R - Interim | |||||
amikacin | Not assoc w R - Interim | |||||
Rv2477c | 2783700 | p.Thr115Ser | missense_variant | 0.17 | ethambutol | |
moxifloxacin | ||||||
streptomycin | ||||||
levofloxacin | ||||||
kanamycin | ||||||
rifampicin | ||||||
amikacin | ||||||
Rv2477c | 2783719 | c.324A>G | synonymous_variant | 0.2 | ethambutol | |
moxifloxacin | ||||||
streptomycin | ||||||
levofloxacin | ||||||
kanamycin | ||||||
rifampicin | ||||||
amikacin | ||||||
Rv2477c | 2783743 | c.300C>G | synonymous_variant | 0.17 | ethambutol | |
moxifloxacin | ||||||
streptomycin | ||||||
levofloxacin | ||||||
kanamycin | ||||||
rifampicin | ||||||
amikacin | ||||||
Rv2477c | 2783751 | p.Ile98Val | missense_variant | 0.15 | ethambutol | |
moxifloxacin | ||||||
streptomycin | ||||||
levofloxacin | ||||||
kanamycin | ||||||
rifampicin | ||||||
amikacin | ||||||
Rv2477c | 2783884 | c.159T>G | synonymous_variant | 0.22 | ethambutol | |
moxifloxacin | ||||||
streptomycin | ||||||
levofloxacin | ||||||
kanamycin | ||||||
rifampicin | ||||||
amikacin | ||||||
Rv2477c | 2783914 | c.129T>C | synonymous_variant | 0.19 | ethambutol | |
moxifloxacin | ||||||
streptomycin | ||||||
levofloxacin | ||||||
kanamycin | ||||||
rifampicin | ||||||
amikacin | ||||||
Rv2477c | 2783920 | c.123G>C | synonymous_variant | 0.18 | ethambutol | |
moxifloxacin | ||||||
streptomycin | ||||||
levofloxacin | ||||||
kanamycin | ||||||
rifampicin | ||||||
amikacin | ||||||
Rv2477c | 2783929 | c.114C>G | synonymous_variant | 0.17 | ethambutol | |
moxifloxacin | ||||||
streptomycin | ||||||
levofloxacin | ||||||
kanamycin | ||||||
rifampicin | ||||||
amikacin | ||||||
Rv2477c | 2783950 | c.93C>A | synonymous_variant | 0.15 | ethambutol | |
moxifloxacin | ||||||
streptomycin | ||||||
levofloxacin | ||||||
kanamycin | ||||||
rifampicin | ||||||
amikacin | ||||||
Rv2477c | 2783956 | c.87T>C | synonymous_variant | 0.13 | ethambutol | |
moxifloxacin | ||||||
streptomycin | ||||||
levofloxacin | ||||||
kanamycin | ||||||
rifampicin | ||||||
amikacin | ||||||
thyX | 3067355 | c.591A>C | synonymous_variant | 0.14 | para-aminosalicylic_acid | |
thyX | 3067406 | c.540A>G | synonymous_variant | 0.13 | para-aminosalicylic_acid | |
thyX | 3067412 | c.534C>G | synonymous_variant | 0.13 | para-aminosalicylic_acid | |
thyX | 3067466 | c.480G>C | synonymous_variant | 0.14 | para-aminosalicylic_acid | |
fbiD | 3339385 | p.Asp90Asn | missense_variant | 1.0 | clofazimine | Uncertain significance |
pretomanid | ||||||
delamanid | Uncertain significance | |||||
mtrB | 3625569 | c.1045T>C | synonymous_variant | 0.16 | bedaquiline | |
rifampicin | Not assoc w R - Interim | |||||
mtrB | 3625572 | p.Thr348Ser | missense_variant | 0.16 | bedaquiline | |
rifampicin | ||||||
mtrB | 3625729 | c.885A>G | synonymous_variant | 0.15 | bedaquiline | |
rifampicin | Not assoc w R - Interim | |||||
mtrB | 3625747 | c.867G>C | synonymous_variant | 0.13 | bedaquiline | |
rifampicin | Not assoc w R - Interim | |||||
mtrB | 3625755 | p.Ala287Thr | missense_variant | 0.13 | bedaquiline | |
rifampicin | Uncertain significance | |||||
lpqB | 3625762 | c.-852A>C | upstream_gene_variant | 0.14 | bedaquiline | |
rifampicin | ||||||
mtrB | 3626858 | c.-245A>G | upstream_gene_variant | 0.13 | bedaquiline | |
rifampicin | ||||||
mtrB | 3627011 | c.-398T>G | upstream_gene_variant | 0.14 | bedaquiline | |
rifampicin | ||||||
mtrA | 3627188 | c.162A>G | synonymous_variant | 0.14 | bedaquiline | |
rifampicin | Not assoc w R - Interim | |||||
mtrB | 3627209 | c.-596G>A | upstream_gene_variant | 0.15 | bedaquiline | |
rifampicin | ||||||
mtrA | 3627227 | c.123T>C | synonymous_variant | 0.19 | bedaquiline | |
rifampicin | Not assoc w R - Interim | |||||
mtrB | 3627233 | c.-620T>C | upstream_gene_variant | 0.17 | bedaquiline | |
rifampicin | ||||||
mtrB | 3627236 | c.-623T>C | upstream_gene_variant | 0.17 | bedaquiline | |
rifampicin | ||||||
mtrA | 3627242 | c.108C>T | synonymous_variant | 0.17 | bedaquiline | |
rifampicin | Not assoc w R - Interim | |||||
rpoA | 3877575 | c.933C>T | synonymous_variant | 0.12 | rifampicin | |
rpoA | 3877587 | c.921A>G | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoA | 3877613 | p.Ile299Val | missense_variant | 0.17 | rifampicin | |
rpoA | 3877758 | c.750G>C | synonymous_variant | 0.16 | rifampicin | |
rpoA | 3877764 | c.744C>G | synonymous_variant | 0.13 | rifampicin | Not assoc w R - Interim |
rpoA | 3877770 | c.738A>G | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoA | 3877773 | c.735G>C | synonymous_variant | 0.17 | rifampicin | |
rpoA | 3877776 | c.732T>C | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoA | 3877782 | c.726T>C | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoA | 3877818 | c.690A>G | synonymous_variant | 0.2 | rifampicin | Not assoc w R - Interim |
rpoA | 3877839 | c.669G>C | synonymous_variant | 0.23 | rifampicin | Not assoc w R - Interim |
rpoA | 3877848 | c.660C>T | synonymous_variant | 0.25 | rifampicin | Not assoc w R - Interim |
rpoA | 3877857 | c.651G>A | synonymous_variant | 0.27 | rifampicin | |
rpoA | 3877866 | c.642G>C | synonymous_variant | 0.26 | rifampicin | |
rpoA | 3877872 | c.636C>T | synonymous_variant | 0.23 | rifampicin | Not assoc w R - Interim |
rpoA | 3877875 | c.633T>C | synonymous_variant | 0.23 | rifampicin | Not assoc w R - Interim |
rpoA | 3877900 | p.Ser203Thr | missense_variant | 0.2 | rifampicin | |
rpoA | 3877905 | c.603A>G | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoA | 3877908 | p.Asn200Ser | missense_variant | 0.16 | rifampicin | |
rpoA | 3877920 | c.588G>C | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoA | 3877962 | c.546G>T | synonymous_variant | 0.14 | rifampicin | Not assoc w R - Interim |
rpoA | 3878103 | c.405A>G | synonymous_variant | 0.22 | rifampicin | |
rpoA | 3878106 | c.402G>C | synonymous_variant | 0.21 | rifampicin | |
rpoA | 3878118 | c.390T>C | synonymous_variant | 0.2 | rifampicin | |
rpoA | 3878143 | p.Gly122Asp | missense_variant | 0.16 | rifampicin | Uncertain significance |
rpoA | 3878157 | c.351C>G | synonymous_variant | 0.14 | rifampicin | |
rpoA | 3878184 | c.324C>T | synonymous_variant | 0.15 | rifampicin | Not assoc w R - Interim |
rpoA | 3878193 | c.315T>C | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoA | 3878197 | p.Glu104Ala | missense_variant | 0.15 | rifampicin | Uncertain significance |
rpoA | 3878199 | c.309T>C | synonymous_variant | 0.15 | rifampicin | |
rpoA | 3878205 | c.303T>C | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoA | 3878217 | c.291A>G | synonymous_variant | 0.15 | rifampicin | Not assoc w R - Interim |
rpoA | 3878385 | c.123C>G | synonymous_variant | 0.17 | rifampicin | |
rpoA | 3878388 | c.120C>G | synonymous_variant | 0.17 | rifampicin | |
rpoA | 3878391 | c.117T>C | synonymous_variant | 0.18 | rifampicin | |
rpoA | 3878415 | c.93C>T | synonymous_variant | 0.17 | rifampicin | |
rpoA | 3878424 | c.84G>C | synonymous_variant | 0.15 | rifampicin | |
rpoA | 3878433 | c.75G>C | synonymous_variant | 0.14 | rifampicin | |
rpoA | 3878436 | c.72A>G | synonymous_variant | 0.13 | rifampicin | |
rpoA | 3878716 | c.-209C>G | upstream_gene_variant | 0.15 | rifampicin | |
rpoA | 3878725 | c.-218A>G | upstream_gene_variant | 0.19 | rifampicin | |
rpoA | 3878742 | c.-235G>A | upstream_gene_variant | 0.18 | rifampicin | |
rpoA | 3878746 | c.-239A>G | upstream_gene_variant | 0.17 | rifampicin | Uncertain significance |
rpoA | 3878749 | c.-242G>C | upstream_gene_variant | 0.15 | rifampicin | |
rpoA | 3878758 | c.-251G>C | upstream_gene_variant | 0.13 | rifampicin | |
rpoA | 3878764 | c.-257A>G | upstream_gene_variant | 0.15 | rifampicin | |
rpoA | 3878884 | c.-377C>G | upstream_gene_variant | 0.13 | rifampicin | |
rpoA | 3878909 | c.-402A>G | upstream_gene_variant | 0.15 | rifampicin | |
rpoA | 3878914 | c.-407T>C | upstream_gene_variant | 0.15 | rifampicin | Uncertain significance |
rpoA | 3878917 | c.-410G>C | upstream_gene_variant | 0.13 | rifampicin | |
rpoA | 3879127 | c.-620T>C | upstream_gene_variant | 0.13 | rifampicin | |
rpoA | 3879154 | c.-647T>C | upstream_gene_variant | 0.16 | rifampicin | |
rpoA | 3879160 | c.-653A>G | upstream_gene_variant | 0.15 | rifampicin | |
rpoA | 3879178 | c.-671T>C | upstream_gene_variant | 0.13 | rifampicin | |
clpC1 | 4038536 | c.2169C>T | synonymous_variant | 0.13 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4038596 | c.2109A>G | synonymous_variant | 0.16 | pyrazinamide | |
clpC1 | 4038623 | c.2082A>G | synonymous_variant | 0.13 | pyrazinamide | |
clpC1 | 4038640 | p.Asp689Asn | missense_variant | 0.13 | pyrazinamide | |
clpC1 | 4038773 | c.1932T>C | synonymous_variant | 0.13 | pyrazinamide | |
clpC1 | 4038782 | c.1923G>C | synonymous_variant | 0.13 | pyrazinamide | |
clpC1 | 4038790 | c.1915C>T | synonymous_variant | 0.14 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4038812 | c.1893T>C | synonymous_variant | 0.15 | pyrazinamide | |
clpC1 | 4038815 | c.1890G>C | synonymous_variant | 0.18 | pyrazinamide | |
clpC1 | 4038878 | c.1827A>G | synonymous_variant | 0.22 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4038908 | c.1797C>G | synonymous_variant | 0.17 | pyrazinamide | |
clpC1 | 4038914 | c.1791G>C | synonymous_variant | 0.15 | pyrazinamide | |
clpC1 | 4038965 | c.1740T>C | synonymous_variant | 0.14 | pyrazinamide | |
clpC1 | 4038971 | c.1734T>C | synonymous_variant | 0.14 | pyrazinamide | |
clpC1 | 4038974 | c.1731T>C | synonymous_variant | 0.14 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4038989 | c.1716T>C | synonymous_variant | 0.14 | pyrazinamide | |
clpC1 | 4038997 | c.1708T>C | synonymous_variant | 0.14 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4039022 | c.1683A>G | synonymous_variant | 0.14 | pyrazinamide | |
clpC1 | 4039085 | c.1620A>G | synonymous_variant | 0.17 | pyrazinamide | |
clpC1 | 4039090 | c.1615C>T | synonymous_variant | 0.17 | pyrazinamide | |
clpC1 | 4039097 | c.1608G>C | synonymous_variant | 0.16 | pyrazinamide | |
clpC1 | 4039103 | c.1602T>C | synonymous_variant | 0.16 | pyrazinamide | |
clpC1 | 4039142 | c.1563A>G | synonymous_variant | 0.14 | pyrazinamide | |
clpC1 | 4039145 | c.1560G>C | synonymous_variant | 0.16 | pyrazinamide | |
clpC1 | 4039169 | p.Glu512Asp | missense_variant | 0.2 | pyrazinamide | |
clpC1 | 4039172 | c.1533A>G | synonymous_variant | 0.17 | pyrazinamide | |
clpC1 | 4039178 | c.1527G>C | synonymous_variant | 0.15 | pyrazinamide | |
clpC1 | 4039183 | c.1522T>C | synonymous_variant | 0.14 | pyrazinamide | |
clpC1 | 4039186 | c.1519C>T | synonymous_variant | 0.15 | pyrazinamide | |
clpC1 | 4039190 | c.1515C>G | synonymous_variant | 0.17 | pyrazinamide | |
clpC1 | 4039205 | c.1500C>G | synonymous_variant | 0.18 | pyrazinamide | |
clpC1 | 4039208 | c.1497C>G | synonymous_variant | 0.16 | pyrazinamide | |
clpC1 | 4039226 | c.1479T>C | synonymous_variant | 0.15 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4039274 | c.1431G>C | synonymous_variant | 0.15 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4039286 | c.1419T>C | synonymous_variant | 0.18 | pyrazinamide | |
clpC1 | 4039295 | c.1410A>G | synonymous_variant | 0.18 | pyrazinamide | |
clpC1 | 4039319 | c.1386T>C | synonymous_variant | 0.18 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4039328 | c.1377A>C | synonymous_variant | 0.18 | pyrazinamide | |
clpC1 | 4039337 | c.1368A>C | synonymous_variant | 0.17 | pyrazinamide | |
clpC1 | 4039352 | c.1353C>T | synonymous_variant | 0.17 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4039556 | c.1149G>C | synonymous_variant | 0.14 | pyrazinamide | |
clpC1 | 4039570 | p.Met379Leu | missense_variant | 0.17 | pyrazinamide | Uncertain significance |
clpC1 | 4039577 | c.1128T>C | synonymous_variant | 0.17 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4039582 | p.Thr375Ser | missense_variant | 0.17 | pyrazinamide | |
clpC1 | 4039724 | c.981A>G | synonymous_variant | 0.14 | pyrazinamide | |
clpC1 | 4039988 | c.717C>G | synonymous_variant | 0.14 | pyrazinamide | |
clpC1 | 4039996 | p.Glu237Gln | missense_variant | 0.13 | pyrazinamide | |
clpC1 | 4040144 | c.561G>C | synonymous_variant | 0.17 | pyrazinamide | |
clpC1 | 4040147 | c.558A>G | synonymous_variant | 0.15 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4040153 | c.552A>G | synonymous_variant | 0.15 | pyrazinamide | |
clpC1 | 4040162 | c.543G>C | synonymous_variant | 0.15 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4040165 | c.540G>C | synonymous_variant | 0.14 | pyrazinamide | |
glpK | 4138601 | c.1155G>C | synonymous_variant | 0.13 | ethambutol | |
moxifloxacin | ||||||
streptomycin | ||||||
levofloxacin | ||||||
rifampicin | ||||||
isoniazid | ||||||
glpK | 4138606 | c.1150T>C | synonymous_variant | 0.13 | ethambutol | |
moxifloxacin | ||||||
streptomycin | ||||||
levofloxacin | ||||||
rifampicin | ||||||
isoniazid | ||||||
glpK | 4138714 | p.Ala348Ser | missense_variant | 0.16 | ethambutol | |
moxifloxacin | ||||||
streptomycin | ||||||
levofloxacin | ||||||
rifampicin | ||||||
isoniazid | ||||||
glpK | 4138718 | c.1038T>C | synonymous_variant | 0.16 | ethambutol | |
moxifloxacin | ||||||
streptomycin | ||||||
levofloxacin | ||||||
rifampicin | ||||||
isoniazid | ||||||
glpK | 4138724 | c.1032A>G | synonymous_variant | 0.17 | ethambutol | |
moxifloxacin | ||||||
streptomycin | ||||||
levofloxacin | ||||||
rifampicin | ||||||
isoniazid | ||||||
glpK | 4139642 | c.114G>A | synonymous_variant | 0.16 | ethambutol | |
moxifloxacin | ||||||
streptomycin | ||||||
levofloxacin | ||||||
rifampicin | ||||||
isoniazid | ||||||
glpK | 4139648 | c.108T>G | synonymous_variant | 0.18 | ethambutol | |
moxifloxacin | ||||||
streptomycin | ||||||
levofloxacin | ||||||
rifampicin | ||||||
isoniazid | ||||||
glpK | 4139653 | p.His35Asn | missense_variant | 0.18 | ethambutol | |
moxifloxacin | ||||||
streptomycin | ||||||
levofloxacin | ||||||
rifampicin | ||||||
isoniazid | ||||||
embC | 4241107 | c.1245G>C | synonymous_variant | 0.14 | ethambutol | |
embC | 4241426 | c.1564C>T | synonymous_variant | 0.14 | ethambutol | |
embB | 4247819 | p.Val436Ile | missense_variant | 0.14 | ethambutol | Uncertain significance |
embB | 4247845 | c.1332G>C | synonymous_variant | 0.13 | ethambutol | |
embB | 4247857 | c.1344C>A | synonymous_variant | 0.16 | ethambutol | |
embB | 4247881 | c.1368G>C | synonymous_variant | 0.14 | ethambutol | |
embB | 4247887 | c.1374C>T | synonymous_variant | 0.18 | ethambutol | Not assoc w R - Interim |
embB | 4247956 | c.1443G>C | synonymous_variant | 0.14 | ethambutol | Not assoc w R - Interim |
embB | 4247968 | c.1455C>G | synonymous_variant | 0.15 | ethambutol | |
embB | 4247974 | c.1461C>G | synonymous_variant | 0.16 | ethambutol | |
embB | 4247983 | c.1470G>C | synonymous_variant | 0.15 | ethambutol | |
embB | 4247986 | c.1473C>G | synonymous_variant | 0.14 | ethambutol | |
embB | 4248118 | c.1605T>C | synonymous_variant | 0.15 | ethambutol | |
embB | 4248163 | c.1650G>C | synonymous_variant | 0.14 | ethambutol | |
embB | 4248169 | c.1656C>G | synonymous_variant | 0.14 | ethambutol | |
embB | 4248172 | c.1659G>C | synonymous_variant | 0.14 | ethambutol | |
embB | 4248206 | p.Ser565Gly | missense_variant | 0.19 | ethambutol | Uncertain significance |
embB | 4248211 | c.1698G>C | synonymous_variant | 0.2 | ethambutol | |
embB | 4248220 | c.1707A>C | synonymous_variant | 0.23 | ethambutol | |
embB | 4248226 | c.1713G>C | synonymous_variant | 0.22 | ethambutol | |
embB | 4248233 | c.1720C>T | synonymous_variant | 0.25 | ethambutol | |
embB | 4248241 | c.1728C>T | synonymous_variant | 0.25 | ethambutol | |
embB | 4248277 | c.1764G>C | synonymous_variant | 0.21 | ethambutol | |
embB | 4248280 | c.1767C>G | synonymous_variant | 0.19 | ethambutol | |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 | capreomycin | Not assoc w R |
amikacin | Not assoc w R | |||||
kanamycin | Not assoc w R |