lineage | Count |
---|---|
157 | |
lineage4.7 | 2 |
lineage4.3.4.2.1 | 4 |
lineage4.9 | 26 |
lineage3.1 | 4 |
lineage4.1.1.3 | 3 |
lineage4 | 26 |
lineage4.1.2.1 | 19 |
lineage4.3.4.1;La1.7 | 1 |
La1 | 2 |
La1.8.1 | 3 |
lineage4.1.3 | 2 |
lineage4;lineage3.1 | 1 |
La1.2 | 2 |
lineage2 | 3 |
lineage1.2.2.2 | 1 |
lineage2.2.1 | 26 |
lineage3 | 4 |
lineage4.6.1.1 | 1 |
lineage4.3.4 | 1 |
lineage4.9.1 | 1 |
lineage4.3.2 | 2 |
lineage4.1.2.1.1 | 1 |
lineage1.1.2 | 2 |
lineage2.2 | 8 |
lineage4.8 | 3 |
lineage4.6.2.2 | 3 |
lineage5.2 | 2 |
lineage4.8;lineage4.1 | 2 |
lineage6.1.3 | 1 |
lineage6 | 1 |
lineage6.3.1 | 1 |
La3 | 1 |
lineage2.2.1.2 | 2 |
lineage4.3.3 | 5 |
lineage4.4.1.1 | 3 |
lineage2.2.1.1 | 4 |
lineage1.2.1.2 | 1 |
lineage4.5 | 2 |
lineage4.3.4.1 | 1 |
lineage1.1.1 | 1 |
lineage2.1 | 2 |
lineage4.9;La3 | 1 |
lineage6.3;lineage4.9;lineage2.1 | 1 |
lineage4.2;La1.7 | 1 |
lineage4;lineage3;lineage2.2.1 | 1 |
lineage6.3;lineage2.2.1 | 1 |
lineage4.1 | 1 |
lineage4.1.1 | 2 |
lineage3;lineage2.1 | 1 |
lineage4.3 | 1 |
lineage4;lineage1.1.2 | 1 |
lineage4.8;La3 | 1 |
lineage4.1.1.2 | 1 |
lineage4.2.2.2 | 1 |
lineage4;lineage1.1 | 1 |
lineage1.1 | 1 |
spoligotype | Count |
---|---|
None | 353 |
ID | Drug resistance | Lineage | Country iso2 | SRR7496509 | Other | None | SRR7496517 | Other | None | SRR7496523 | Other | lineage4.7 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR7585435 | Other | lineage4.9 | None | ERR323045 | HR-TB | None | ERR323043 | HR-TB | None | ERR323041 | HR-TB | None | ERR323055 | HR-TB | None | ERR323063 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR11465025 | Other | lineage4.1.1.3 | None | ERR323108 | HR-TB | lineage4 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR323107 | Other | lineage4 | None | ERR067699 | HR-TB | lineage4 | None | ERR067681 | HR-TB | None | ERR11465802 | Other | lineage4.3.4.1;La1.7 | None | ERR1023525 | HR-TB | lineage4 | None | ERR1035157 | Other | lineage4.9 | None | ERR11465024 | Other | lineage4.1.1.3 | None | ERR1063862 | HR-TB | None | ERR1063858 | HR-TB | None | ERR1063859 | HR-TB | None | ERR133825 | Sensitive | lineage4 | None | ERR133986 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3283010 | Other | La1 | None | ERR3283017 | HR-TB | None | ERR3283027 | HR-TB | None | ERR5336148 | Other | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283055 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283058 | Other | lineage4.9 | None | ERR4821179 | Other | lineage4.1.2.1 | gb | ERR3445504 | HR-TB | None | ERR3439432 | Other | None | ERR3468544 | HR-TB | None | ERR3445501 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3445503 | HR-TB | None | ERR3797015 | HR-TB | None | ERR3797016 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797069 | Other | None | ERR3797043 | HR-TB | None | ERR3797036 | HR-TB | None | ERR3797046 | HR-TB | None | ERR3797058 | Other | lineage4.9 | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797083 | HR-TB | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR403298 | HR-TB | lineage4 | None | ERR4188350 | HR-TB | None | ERR405209 | Sensitive | lineage4 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4798262 | HR-TB | La1 | None | ERR4769452 | HR-TB | None | ERR4769457 | Other | lineage4.9 | None | ERR4769497 | HR-TB | La1.2 | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4407463 | HR-TB | None | ERR473332 | Other | lineage4 | None | ERR4769450 | HR-TB | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR4798406 | HR-TB | None | ERR4809167 | Sensitive | lineage4.3.4.2.1 | za | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4799025 | Pre-XDR-TB | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR4800341 | Other | lineage3 | None | ERR4811022 | HR-TB | None | ERR4810741 | HR-TB | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR4811105 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR4811493 | HR-TB | None | ERR6198317 | Other | La1.2 | None | ERR6358837 | HR-TB | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR702404 | HR-TB | None | ERR6359045 | HR-TB | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR702406 | HR-TB | None | ERR245758 | Other | lineage4.9.1 | None | ERR736874 | HR-TB | None | ERR736848 | HR-TB | None | ERR736875 | HR-TB | lineage4 | None | ERR736867 | HR-TB | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | SRR21733183 | RR-TB | lineage1.1.2 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR9117709 | HR-TB | None | ERR8976043 | HR-TB | None | ERR9786444 | Sensitive | lineage4.8 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9786526 | Other | lineage4.8;lineage4.1 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786604 | Other | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9787197 | Other | None | ERR9787153 | Other | lineage6.1.3 | None | ERR9787165 | Other | lineage6 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9786843 | Other | None | ERR990545 | Other | lineage3 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR10809074 | Sensitive | lineage4 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1167384 | Other | lineage4 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1169194 | Other | None | SRR1169306 | Other | None | SRR1169249 | Other | La3 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1172234 | Other | None | SRR1172728 | MDR-TB | None | SRR1172817 | HR-TB | None | SRR1172857 | MDR-TB | None | SRR1172951 | Other | None | SRR1173118 | Other | None | SRR1173363 | HR-TB | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173153 | HR-TB | None | SRR1173384 | Other | lineage4 | None | SRR1173484 | Other | lineage4 | None | SRR1173400 | Other | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173629 | Other | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173706 | Other | lineage4.9 | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1173788 | Other | None | SRR1173778 | Other | None | SRR1175074 | MDR-TB | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1181251 | Other | lineage2.2.1 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1183049 | Other | lineage2.2 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1184024 | Other | lineage2.2.1.1 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1180270 | Other | lineage2.2.1 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR1181328 | Other | lineage2.2.1 | None | SRR1183145 | Other | lineage2.2.1 | None | SRR1184294 | HR-TB | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196494 | MDR-TB | None | SRR1196566 | HR-TB | None | SRR1184372 | MDR-TB | None | SRR1184381 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR1184388 | Other | None | SRR1196546 | HR-TB | None | SRR12006550 | Other | lineage1.2.1.2 | None | SRR1196768 | MDR-TB | None | SRR1196677 | HR-TB | lineage2 | None | SRR12142341 | HR-TB | None | SRR13861500 | RR-TB | lineage4.9 | None | SRR12416824 | HR-TB | None | SRR13423544 | Other | lineage4.5 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR13837528 | Other | lineage4.9 | None | SRR13861322 | Other | lineage4.9 | None | SRR13861381 | MDR-TB | lineage4.9 | None | SRR13861400 | Other | lineage4.9 | None | SRR13861146 | Sensitive | lineage4.9 | None | SRR14782405 | HR-TB | None | SRR13861646 | Other | lineage4.9 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR1640750 | HR-TB | None | SRR15368973 | Other | None | SRR1791696 | Other | La1.8.1 | None | SRR1710057 | Other | lineage2.1 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR26399973 | Other | lineage4.9;La3 | None | SRR19303884 | HR-TB | None | SRR20970016 | Other | lineage2.2 | None | SRR21732980 | Other | lineage4.3.3 | None | SRR19304036 | HR-TB | None | SRR20969677 | HR-TB | lineage2 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | SRR23961559 | Other | lineage4.2;La1.7 | None | SRR25827605 | Pre-XDR-TB | lineage4;lineage3;lineage2.2.1 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | SRR3675464 | HR-TB | lineage4.1 | None | ERR176778 | HR-TB | None | ERR4815604 | HR-TB | None | SRR3675502 | Other | None | ERR176779 | HR-TB | None | SRR6325445 | HR-TB | None | ERR176793 | Other | lineage4.1.1 | None | ERR158583 | HR-TB | None | SRR3675465 | HR-TB | None | ERR1035239 | HR-TB | None | SRR3675482 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR161033 | HR-TB | None | SAMN02585910 | Other | lineage2.2.1 | None | SRR3675486 | HR-TB | None | SRR3675488 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3416776 | Other | lineage2.1 | None | SRR3675222 | Other | None | SRR3675501 | HR-TB | None | SRR3675221 | HR-TB | None | SRR3675236 | HR-TB | None | SRR3675232 | Other | lineage4.1.2.1 | None | ERR181887 | HR-TB | None | ERR181824 | HR-TB | lineage4 | None | SRR3675270 | HR-TB | None | ERR176568 | Other | lineage4.3 | None | SRR3675383 | HR-TB | None | SRR3675311 | Other | None | ERR176643 | HR-TB | None | ERR176651 | HR-TB | None | ERR176751 | HR-TB | None | ERR4815752 | Other | lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR4816999 | Other | None | ERR212001 | HR-TB | None | SRR3675545 | HR-TB | None | ERR4816585 | Other | lineage2.2 | None | SRR3675550 | Other | None | ERR212033 | HR-TB | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | SRR3742665 | HR-TB | None | ERR4817060 | RR-TB | None | SRR3675558 | HR-TB | None | SRR3675572 | Other | None | ERR212125 | HR-TB | lineage4 | None | ERR212138 | HR-TB | lineage4 | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR4817893 | Other | lineage4.8;La3 | None | SRR7496472 | Other | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4818021 | Other | La1.8.1 | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR4818110 | Sensitive | lineage4.9 | None | ERR234659 | HR-TB | None | ERR1035162 | Other | None | ERR2229143 | Other | lineage4.1.1 | None | ERR4819051 | Other | lineage4 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR4820335 | Other | lineage4.1.2.1 | None | SRR5007188 | Other | lineage4 | None | ERR2513470 | Other | lineage4.2.2.2 | None | ERR4818615 | Other | None | ERR4819322 | Other | lineage4;lineage1.1 | None | SRR5341418 | Other | None | SAMN02414850 | Other | lineage4.1.2.1 | None | ERR2514327 | HR-TB | lineage4.8 | None | ERR6359082 | Other | lineage4.9 | None | SRR5341333 | HR-TB | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341302 | HR-TB | None | ERR4819932 | Other | lineage4.7 | None | SRR5341332 | Pre-XDR-TB | lineage3 | None | SRR5341330 | HR-TB | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR4821053 | Other | lineage3 | None | ERR2446563 | Other | lineage2.2.1 | nl | ERR2693239 | HR-TB | None | SRR6045555 | HR-TB | None | ERR4821655 | Sensitive | lineage4 | None | SRR5535933 | HR-TB | None | ERR278594 | HR-TB | None | SRR6044790 | HR-TB | None | SRR6046141 | Other | lineage4.9 | None | SRR6044780 | Other | lineage4.9 | None | SRR6046133 | HR-TB | None | SRR6044855 | Other | lineage4.9 | None | SRR6045010 | Other | lineage4 | None | SRR6045952 | HR-TB | None | SRR6045053 | Other | None | SRR6046066 | HR-TB | None | SRR6045217 | Other | lineage4 | None | SRR6045233 | HR-TB | None | SRR6045320 | Other | lineage4.9 | None | SRR6046046 | Other | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6046225 | HR-TB | None | SRR6046305 | Other | lineage4.9 | None | SRR6325448 | HR-TB | None | SRR6046492 | Other | None | SRR6046514 | HR-TB | None | SRR6325444 | HR-TB | None | ERR4830353 | Other | None | SRR6046482 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR6046824 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6325447 | HR-TB | None | SRR6325442 | HR-TB | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6046878 | HR-TB | lineage4 | None | ERR3077978 | Other | lineage1.1 | None | SRR6831950 | Other | lineage4.3.3 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR294248 | HR-TB | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR4831546 | HR-TB | lineage2.2 | None | SRR6789626 | Other | None | SRR6832249 | Other | lineage2.2.1 | None | ERR11465510 | Sensitive | lineage4.3.4.2.1 | None | SRR6832787 | RR-TB | lineage2.2.1 | None | ERR323036 | HR-TB | None | ERR5311099 | HR-TB | None | ERR502532 | HR-TB | None | ERR502908 | HR-TB | lineage2.2.1 | None | ERR502889 | Other | None | ERR5311081 | HR-TB | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR323038 | HR-TB | None | ERR5311090 | HR-TB | None | SRR8217918 | HR-TB | None |
---|