TB-Profiler result

Run: SRR1710057
Summary

Run ID: SRR1710057

Sample name:

Date: 03-04-2023 17:49:41

Number of reads: 3581134

Percentage reads mapped: 71.49

Strain: lineage2.1

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage2 East-Asian Beijing RD105 0.99
La1.2.BCG M.bovis BCG None 0.07
lineage2.1 East-Asian (non-Beijing) None None 0.97
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472307 n.462C>T non_coding_transcript_exon_variant 0.26 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6123 p.Ala295Gly missense_variant 0.15
gyrB 6136 c.897G>A synonymous_variant 0.15
gyrB 6139 c.900G>C synonymous_variant 0.17
gyrB 6268 c.1029C>G synonymous_variant 0.17
gyrB 6280 c.1041T>C synonymous_variant 0.18
gyrB 6286 c.1047T>C synonymous_variant 0.18
gyrB 6289 c.1050C>T synonymous_variant 0.15
gyrB 6292 c.1053G>C synonymous_variant 0.15
gyrA 6307 c.-995T>G upstream_gene_variant 0.21
gyrA 6319 c.-983G>C upstream_gene_variant 0.19
gyrA 6362 c.-940T>C upstream_gene_variant 0.19
gyrA 6700 c.-602T>C upstream_gene_variant 0.18
gyrA 6703 c.-599G>C upstream_gene_variant 0.17
gyrA 6712 c.-590G>C upstream_gene_variant 0.16
gyrA 6728 c.-574_-572delCTAinsTTG upstream_gene_variant 0.15
gyrA 6742 c.-560A>G upstream_gene_variant 0.17
gyrA 6745 c.-557T>G upstream_gene_variant 0.18
gyrA 6751 c.-551G>C upstream_gene_variant 0.19
gyrA 6760 c.-542G>C upstream_gene_variant 0.23
gyrA 6763 c.-539G>C upstream_gene_variant 0.22
gyrA 6775 c.-527G>C upstream_gene_variant 0.21
gyrB 6797 p.Gly520Thr missense_variant 0.16
gyrA 6811 c.-491C>T upstream_gene_variant 0.19
gyrA 6967 c.-335T>C upstream_gene_variant 0.16
gyrA 6973 c.-329G>C upstream_gene_variant 0.18
gyrA 6982 c.-320A>C upstream_gene_variant 0.2
gyrA 7006 c.-296T>C upstream_gene_variant 0.21
gyrA 7007 c.-295C>T upstream_gene_variant 0.21
gyrA 7010 c.-292C>T upstream_gene_variant 0.21
gyrA 7015 c.-287G>A upstream_gene_variant 0.21
gyrB 7023 p.Leu595Gln missense_variant 0.24
gyrA 7033 c.-269G>C upstream_gene_variant 0.23
gyrB 7051 p.Glu604Asp missense_variant 0.18
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7391 c.90C>T synonymous_variant 0.17
gyrA 7394 c.93T>C synonymous_variant 0.18
gyrA 7427 c.126G>C synonymous_variant 0.15
gyrA 7457 c.156T>C synonymous_variant 0.19
gyrA 7475 c.174A>G synonymous_variant 0.2
gyrA 7480 p.Phe60Tyr missense_variant 0.2
gyrA 7484 c.183T>C synonymous_variant 0.21
gyrA 7496 c.195C>G synonymous_variant 0.21
gyrA 7514 c.213C>G synonymous_variant 0.16
gyrA 7523 c.222C>G synonymous_variant 0.15
gyrA 7532 c.231T>C synonymous_variant 0.18
gyrA 7541 c.240C>G synonymous_variant 0.19
gyrA 7547 c.246C>T synonymous_variant 0.18
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 8121 c.820T>C synonymous_variant 0.16
gyrA 8129 c.828T>C synonymous_variant 0.19
gyrA 8135 c.834C>G synonymous_variant 0.2
gyrA 8156 c.855T>C synonymous_variant 0.18
gyrA 8168 c.867A>G synonymous_variant 0.2
gyrA 8177 c.876A>C synonymous_variant 0.19
gyrA 8186 c.885G>A synonymous_variant 0.17
gyrA 8189 c.888G>C synonymous_variant 0.17
gyrA 8288 c.987T>C synonymous_variant 0.17
gyrA 8294 c.993T>C synonymous_variant 0.2
gyrA 8324 c.1023T>C synonymous_variant 0.2
gyrA 8330 c.1029C>G synonymous_variant 0.2
gyrA 8339 c.1038A>G synonymous_variant 0.18
gyrA 8340 p.Ala347Ser missense_variant 0.17
gyrA 8420 c.1119T>C synonymous_variant 0.16
gyrA 8442 c.1141C>T synonymous_variant 0.2
gyrA 8453 c.1152A>C synonymous_variant 0.26
gyrA 8462 c.1161A>T synonymous_variant 0.26
gyrA 8465 c.1164C>G synonymous_variant 0.25
gyrA 8471 c.1170T>C synonymous_variant 0.23
gyrA 8472 c.1171C>T synonymous_variant 0.23
gyrA 8480 c.1179C>T synonymous_variant 0.26
gyrA 8486 c.1185T>C synonymous_variant 0.29
gyrA 8516 c.1215T>C synonymous_variant 0.26
gyrA 8519 c.1218A>C synonymous_variant 0.25
gyrA 8520 c.1219C>T synonymous_variant 0.24
gyrA 8528 c.1227G>C synonymous_variant 0.24
gyrA 8543 c.1242C>G synonymous_variant 0.17
gyrA 8546 c.1245T>C synonymous_variant 0.16
gyrA 8552 c.1251C>A synonymous_variant 0.15
gyrA 8576 c.1275C>G synonymous_variant 0.2
gyrA 8579 c.1278C>T synonymous_variant 0.21
gyrA 8588 c.1287G>A synonymous_variant 0.19
gyrA 8597 c.1296C>G synonymous_variant 0.2
gyrA 8603 c.1302A>G synonymous_variant 0.2
gyrA 8619 c.1318_1320delTTGinsCTA synonymous_variant 0.22
gyrA 8624 c.1323G>C synonymous_variant 0.22
gyrA 8636 c.1335A>C synonymous_variant 0.25
gyrA 8642 c.1341A>G synonymous_variant 0.24
gyrA 8672 c.1371A>G synonymous_variant 0.2
gyrA 8858 c.1557T>C synonymous_variant 0.15
gyrA 8873 c.1572A>C synonymous_variant 0.16
gyrA 8891 c.1590G>A synonymous_variant 0.2
gyrA 8897 c.1596T>C synonymous_variant 0.21
gyrA 8903 c.1602T>C synonymous_variant 0.22
gyrA 8933 c.1632G>C synonymous_variant 0.22
gyrA 8939 c.1638T>C synonymous_variant 0.2
gyrA 8942 c.1641G>C synonymous_variant 0.2
gyrA 8946 c.1645_1647delTTGinsCTC synonymous_variant 0.19
gyrA 9119 c.1818A>G synonymous_variant 0.18
gyrA 9122 c.1821C>G synonymous_variant 0.19
gyrA 9143 c.1842T>C synonymous_variant 0.19
gyrA 9158 c.1857C>T synonymous_variant 0.14
gyrA 9161 c.1860C>G synonymous_variant 0.15
gyrA 9182 c.1881T>C synonymous_variant 0.19
gyrA 9191 c.1890G>C synonymous_variant 0.21
gyrA 9200 c.1899A>G synonymous_variant 0.2
gyrA 9204 p.Ser635Thr missense_variant 0.2
gyrA 9224 c.1923C>T synonymous_variant 0.17
gyrA 9230 c.1929T>C synonymous_variant 0.19
gyrA 9233 c.1932C>G synonymous_variant 0.21
gyrA 9239 c.1938C>T synonymous_variant 0.23
gyrA 9252 p.Val651Ile missense_variant 0.25
gyrA 9284 c.1983T>C synonymous_variant 0.23
gyrA 9291 c.1990C>T synonymous_variant 0.19
gyrA 9296 c.1995T>C synonymous_variant 0.21
gyrA 9299 c.1998G>C synonymous_variant 0.17
gyrA 9300 p.Ala667Ser missense_variant 0.17
gyrA 9304 p.Gly668Asp missense_variant 1.0
gyrA 9308 p.Asp669Glu missense_variant 0.2
gyrA 9323 c.2022C>A synonymous_variant 0.19
fgd1 490797 c.15G>A synonymous_variant 0.18
fgd1 490800 c.18A>C synonymous_variant 0.18
fgd1 490803 c.21T>A synonymous_variant 0.2
fgd1 490812 c.30A>G synonymous_variant 0.2
fgd1 490815 c.33G>C synonymous_variant 0.2
fgd1 490827 c.45C>T synonymous_variant 0.21
fgd1 490848 c.66A>G synonymous_variant 0.19
fgd1 490851 c.69A>T synonymous_variant 0.19
fgd1 490868 p.Ala29Gly missense_variant 0.19
fgd1 490887 c.105G>A synonymous_variant 0.24
fgd1 490890 c.108C>G synonymous_variant 0.2
fgd1 490905 c.123T>C synonymous_variant 0.18
fgd1 490911 c.129T>G synonymous_variant 0.17
fgd1 490948 p.Ser56Ala missense_variant 0.17
fgd1 491144 p.Ala121Asp missense_variant 0.15
fgd1 491151 c.369G>A synonymous_variant 0.18
fgd1 491181 c.399T>C synonymous_variant 0.28
fgd1 491184 c.402A>G synonymous_variant 0.28
fgd1 491191 p.Gly137Arg missense_variant 0.28
fgd1 491194 c.412_414delCTAinsTTG synonymous_variant 0.29
fgd1 491202 c.420G>C synonymous_variant 0.32
fgd1 491203 p.Gln141Glu missense_variant 0.31
fgd1 491212 p.Ser144Arg missense_variant 0.31
fgd1 491217 c.435T>C synonymous_variant 0.34
fgd1 491232 c.450T>C synonymous_variant 0.3
fgd1 491241 p.Asp153Glu missense_variant 0.2
fgd1 491244 c.462T>C synonymous_variant 0.2
fgd1 491601 c.819T>C synonymous_variant 0.15
fgd1 491742 c.960T>C synonymous_variant 1.0
mshA 575713 c.366G>A synonymous_variant 0.18
mshA 575719 c.372C>T synonymous_variant 0.21
mshA 575734 c.387T>G synonymous_variant 0.22
mshA 575737 c.390T>C synonymous_variant 0.22
mshA 575746 c.399C>G synonymous_variant 0.24
mshA 575752 c.405G>C synonymous_variant 0.2
mshA 575755 c.408G>A synonymous_variant 0.2
mshA 575756 c.409C>T synonymous_variant 0.2
mshA 575779 c.432A>G synonymous_variant 0.16
mshA 575782 c.435G>C synonymous_variant 0.17
mshA 575809 c.462C>T synonymous_variant 0.25
mshA 575812 c.465C>T synonymous_variant 0.24
mshA 575821 c.474G>C synonymous_variant 0.23
mshA 575824 c.477T>G synonymous_variant 0.25
mshA 575830 c.483C>G synonymous_variant 0.26
mshA 575833 c.486C>G synonymous_variant 0.26
mshA 575845 c.498C>T synonymous_variant 0.29
mshA 575864 c.517T>C synonymous_variant 0.31
mshA 575884 c.537G>C synonymous_variant 0.27
mshA 575887 c.540G>C synonymous_variant 0.26
mshA 575893 c.546C>G synonymous_variant 0.25
mshA 575896 c.549G>C synonymous_variant 0.26
mshA 575908 c.561A>G synonymous_variant 0.17
mshA 575917 p.Asp190Glu missense_variant 0.18
mshA 575920 c.573C>G synonymous_variant 0.15
ccsA 620256 c.366C>G synonymous_variant 0.16
ccsA 620265 c.375C>G synonymous_variant 0.17
ccsA 620310 c.420C>T synonymous_variant 0.17
ccsA 620317 p.Val143Leu missense_variant 0.18
ccsA 620340 c.450C>G synonymous_variant 0.19
ccsA 620346 c.456C>G synonymous_variant 0.2
ccsA 620362 p.Ala158Thr missense_variant 0.19
ccsA 620367 c.477T>C synonymous_variant 0.17
ccsA 620373 c.483C>T synonymous_variant 0.17
ccsA 620376 c.486G>C synonymous_variant 0.16
ccsA 620385 c.495G>C synonymous_variant 0.16
ccsA 620388 c.498A>G synonymous_variant 0.16
ccsA 620389 c.499C>T synonymous_variant 0.16
ccsA 620412 c.522T>C synonymous_variant 0.17
ccsA 620415 c.525T>C synonymous_variant 0.16
ccsA 620421 c.531G>C synonymous_variant 0.17
ccsA 620424 c.534G>C synonymous_variant 0.18
ccsA 620433 c.543C>G synonymous_variant 0.18
ccsA 620436 c.546T>A synonymous_variant 0.16
ccsA 620439 c.549T>C synonymous_variant 0.16
ccsA 620445 c.555A>G synonymous_variant 0.16
ccsA 620460 c.570T>G synonymous_variant 0.15
rpoB 760112 c.306T>C synonymous_variant 0.17
rpoB 760118 c.312T>G synonymous_variant 0.17
rpoB 760121 c.315T>C synonymous_variant 0.17
rpoB 760130 p.Asp108Glu missense_variant 0.17
rpoB 760139 c.333A>G synonymous_variant 0.16
rpoB 760142 c.336C>G synonymous_variant 0.16
rpoB 760181 c.375T>C synonymous_variant 0.21
rpoB 760184 c.378A>G synonymous_variant 0.22
rpoB 760196 c.390C>G synonymous_variant 0.21
rpoB 760223 c.417T>C synonymous_variant 0.21
rpoB 760235 c.429T>C synonymous_variant 0.22
rpoB 760283 c.477G>C synonymous_variant 0.17
rpoB 760298 c.492G>C synonymous_variant 0.19
rpoB 760307 c.501T>C synonymous_variant 0.17
rpoB 760310 c.504G>C synonymous_variant 0.17
rpoB 760328 c.522G>C synonymous_variant 0.19
rpoB 760331 c.525G>C synonymous_variant 0.19
rpoB 760340 c.534G>T synonymous_variant 0.23
rpoB 760361 c.555T>C synonymous_variant 0.27
rpoB 760370 c.564C>G synonymous_variant 0.25
rpoB 760376 p.Asp190Glu missense_variant 0.24
rpoB 760380 p.Thr192Leu missense_variant 0.23
rpoB 760406 c.600G>C synonymous_variant 0.27
rpoB 760412 c.606C>G synonymous_variant 0.25
rpoB 760424 c.618C>G synonymous_variant 0.22
rpoB 760430 c.624T>C synonymous_variant 0.21
rpoB 760475 c.669A>G synonymous_variant 0.22
rpoB 760481 c.675G>T synonymous_variant 0.21
rpoB 760484 c.678A>G synonymous_variant 0.22
rpoB 760522 p.Ser239Asn missense_variant 0.21
rpoB 760532 c.726T>C synonymous_variant 0.17
rpoB 760533 p.Val243Thr missense_variant 0.16
rpoB 760541 c.735G>C synonymous_variant 0.17
rpoB 760547 c.741G>C synonymous_variant 0.18
rpoB 760591 p.Val262Ala missense_variant 0.2
rpoB 760611 c.805T>C synonymous_variant 0.19
rpoB 760646 c.840C>G synonymous_variant 0.22
rpoB 760655 c.849A>G synonymous_variant 0.22
rpoB 760661 c.855A>C synonymous_variant 0.22
rpoB 760670 c.864G>C synonymous_variant 0.19
rpoB 760674 c.868T>C synonymous_variant 0.17
rpoB 760679 c.873A>G synonymous_variant 0.16
rpoB 760683 c.877T>C synonymous_variant 0.15
rpoB 760845 p.Thr347Pro missense_variant 0.16
rpoB 760862 c.1056G>C synonymous_variant 0.15
rpoB 760869 p.Val355Ile missense_variant 0.19
rpoB 760886 c.1080A>G synonymous_variant 0.18
rpoB 760925 c.1119T>C synonymous_variant 0.21
rpoB 760928 c.1122G>C synonymous_variant 0.19
rpoB 760931 c.1125C>G synonymous_variant 0.2
rpoB 760934 c.1128C>T synonymous_variant 0.2
rpoB 760946 c.1140A>G synonymous_variant 0.26
rpoB 760982 c.1176G>C synonymous_variant 0.19
rpoB 760985 c.1179G>C synonymous_variant 0.21
rpoB 760991 c.1185G>C synonymous_variant 0.21
rpoB 761006 c.1200C>G synonymous_variant 0.2
rpoB 761015 c.1209G>C synonymous_variant 0.22
rpoB 761021 c.1215G>C synonymous_variant 0.2
rpoB 761027 c.1221A>G synonymous_variant 0.19
rpoB 761036 c.1230G>C synonymous_variant 0.17
rpoB 761037 c.1231T>C synonymous_variant 0.17
rpoB 761057 c.1251G>C synonymous_variant 0.19
rpoB 761102 c.1296A>G synonymous_variant 0.18
rpoB 761129 c.1323G>C synonymous_variant 0.2
rpoB 761132 c.1326G>T synonymous_variant 0.21
rpoB 761133 c.1327T>C synonymous_variant 0.22
rpoB 761150 c.1344A>C synonymous_variant 0.2
rpoB 761153 c.1347G>C synonymous_variant 0.2
rpoB 761165 c.1359G>C synonymous_variant 0.2
rpoB 761180 c.1374A>C synonymous_variant 0.24
rpoB 761189 c.1383T>C synonymous_variant 0.27
rpoB 761195 c.1389G>C synonymous_variant 0.27
rpoB 761207 c.1401C>T synonymous_variant 0.26
rpoB 761213 c.1407G>C synonymous_variant 0.24
rpoB 761219 c.1413G>C synonymous_variant 0.24
rpoB 761249 c.1443A>G synonymous_variant 0.31
rpoB 761255 c.1449T>G synonymous_variant 0.3
rpoB 761261 c.1455G>T synonymous_variant 0.33
rpoB 761306 c.1500C>G synonymous_variant 0.24
rpoB 761327 c.1521A>G synonymous_variant 0.24
rpoB 761330 c.1524G>C synonymous_variant 0.28
rpoB 761354 c.1548C>T synonymous_variant 0.27
rpoB 761360 c.1554T>C synonymous_variant 0.26
rpoB 761362 p.Ser519Thr missense_variant 0.26
rpoB 761373 p.Val523His missense_variant 0.22
rpoB 761408 c.1602G>C synonymous_variant 0.22
rpoB 761414 c.1608A>G synonymous_variant 0.22
rpoB 761477 c.1671C>G synonymous_variant 0.21
rpoB 761492 c.1686G>C synonymous_variant 0.22
rpoB 761510 c.1704T>C synonymous_variant 0.24
rpoB 761531 c.1725C>G synonymous_variant 0.29
rpoB 761537 c.1731C>G synonymous_variant 0.31
rpoB 761570 c.1764T>C synonymous_variant 0.34
rpoB 761573 c.1767C>G synonymous_variant 0.33
rpoB 761579 c.1773G>C synonymous_variant 0.33
rpoB 761588 c.1782C>T synonymous_variant 0.34
rpoB 761606 c.1800C>G synonymous_variant 0.32
rpoB 761612 c.1806G>C synonymous_variant 0.3
rpoB 761615 c.1809A>C synonymous_variant 0.32
rpoB 761636 c.1830G>T synonymous_variant 0.33
rpoB 761645 c.1839C>G synonymous_variant 0.3
rpoB 761648 c.1842T>C synonymous_variant 0.26
rpoB 761657 c.1851C>G synonymous_variant 0.24
rpoB 761772 p.His656Ala missense_variant 0.15
rpoB 761778 p.Asn658Asp missense_variant 0.17
rpoB 761791 p.Arg662His missense_variant 0.18
rpoB 761813 c.2007T>C synonymous_variant 0.19
rpoB 761815 p.Ala670Glu missense_variant 0.19
rpoB 761834 c.2028T>C synonymous_variant 0.17
rpoB 761858 c.2052G>C synonymous_variant 0.16
rpoB 761873 c.2067A>C synonymous_variant 0.19
rpoB 761885 c.2079T>C synonymous_variant 0.18
rpoB 761948 c.2142G>C synonymous_variant 0.27
rpoB 761954 c.2148C>G synonymous_variant 0.27
rpoB 762008 c.2202C>T synonymous_variant 0.32
rpoB 762014 c.2208C>T synonymous_variant 0.33
rpoB 762017 c.2211A>G synonymous_variant 0.34
rpoB 762053 c.2247T>C synonymous_variant 0.31
rpoB 762062 c.2256T>C synonymous_variant 0.27
rpoB 762065 c.2259T>C synonymous_variant 0.28
rpoB 762083 c.2277T>C synonymous_variant 0.28
rpoB 762086 c.2280G>C synonymous_variant 0.27
rpoB 762101 c.2295C>G synonymous_variant 0.28
rpoB 762114 p.Ile770Val missense_variant 0.18
rpoB 762140 c.2334G>C synonymous_variant 0.15
rpoB 762143 c.2337T>C synonymous_variant 0.17
rpoB 762149 c.2343G>C synonymous_variant 0.18
rpoB 762167 c.2361T>C synonymous_variant 0.23
rpoB 762176 c.2370T>C synonymous_variant 0.21
rpoB 762185 c.2379G>C synonymous_variant 0.21
rpoB 762206 c.2400C>G synonymous_variant 0.28
rpoB 762233 c.2427G>C synonymous_variant 0.29
rpoB 762246 c.2440C>T synonymous_variant 0.31
rpoB 762254 c.2448T>G synonymous_variant 0.29
rpoB 762257 c.2451C>G synonymous_variant 0.28
rpoB 762266 c.2460T>C synonymous_variant 0.3
rpoB 762284 c.2478G>C synonymous_variant 0.3
rpoB 762293 c.2487T>C synonymous_variant 0.35
rpoB 762317 c.2511A>G synonymous_variant 0.22
rpoB 762329 c.2523G>C synonymous_variant 0.2
rpoB 762338 c.2532T>C synonymous_variant 0.18
rpoC 762395 c.-975G>C upstream_gene_variant 0.15
rpoC 762410 c.-960T>C upstream_gene_variant 0.17
rpoC 762416 c.-954A>G upstream_gene_variant 0.16
rpoC 762419 c.-951C>G upstream_gene_variant 0.16
rpoC 762434 c.-936T>C upstream_gene_variant 0.2
rpoC 762449 c.-921C>A upstream_gene_variant 0.17
rpoC 762467 c.-903C>T upstream_gene_variant 0.22
rpoC 762509 c.-861T>G upstream_gene_variant 0.22
rpoB 762510 p.Ala902Pro missense_variant 0.22
rpoC 762521 c.-849C>T upstream_gene_variant 0.22
rpoC 762533 c.-837T>C upstream_gene_variant 0.17
rpoC 762536 c.-834T>C upstream_gene_variant 0.18
rpoC 762537 c.-833T>C upstream_gene_variant 0.18
rpoC 762782 c.-588T>C upstream_gene_variant 0.17
rpoB 762789 p.Leu995Met missense_variant 0.15
rpoB 762799 p.Ala998Gly missense_variant 0.17
rpoB 762810 p.Ala1002Ser missense_variant 0.16
rpoB 762813 p.Met1003Val missense_variant 0.19
rpoC 762818 c.-552C>G upstream_gene_variant 0.2
rpoC 762827 c.-543G>C upstream_gene_variant 0.21
rpoC 762857 c.-513C>G upstream_gene_variant 0.17
rpoC 762860 c.-510G>C upstream_gene_variant 0.18
rpoC 762863 c.-507T>C upstream_gene_variant 0.17
rpoC 762929 c.-441G>C upstream_gene_variant 0.26
rpoC 762989 c.-381G>C upstream_gene_variant 0.23
rpoC 762995 c.-375G>T upstream_gene_variant 0.23
rpoC 763013 c.-357C>G upstream_gene_variant 0.26
rpoC 763028 c.-342T>C upstream_gene_variant 0.25
rpoC 763031 c.-339T>G upstream_gene_variant 1.0
rpoC 763034 c.-336C>G upstream_gene_variant 0.24
rpoC 763040 c.-330C>G upstream_gene_variant 0.27
rpoC 763067 c.-303C>G upstream_gene_variant 0.26
rpoC 763070 c.-300T>C upstream_gene_variant 0.26
rpoC 763085 c.-285C>G upstream_gene_variant 0.28
rpoC 763115 c.-255T>C upstream_gene_variant 0.25
rpoC 763136 c.-234C>T upstream_gene_variant 0.26
rpoC 763148 c.-222G>C upstream_gene_variant 0.22
rpoC 763158 c.-212C>T upstream_gene_variant 0.21
rpoC 763166 c.-204A>G upstream_gene_variant 0.19
rpoC 763190 c.-180C>T upstream_gene_variant 0.18
rpoC 763402 c.33C>G synonymous_variant 0.15
rpoC 763411 c.42T>G synonymous_variant 0.17
rpoC 763414 c.45T>C synonymous_variant 0.18
rpoC 763441 c.72C>T synonymous_variant 0.24
rpoC 763444 c.75T>C synonymous_variant 0.25
rpoC 763456 c.87A>G synonymous_variant 0.28
rpoC 763486 c.117T>G synonymous_variant 0.33
rpoC 763492 c.123G>C synonymous_variant 0.33
rpoC 763528 c.159G>A synonymous_variant 0.3
rpoC 763546 c.177A>G synonymous_variant 0.29
rpoC 763570 c.201G>C synonymous_variant 0.24
rpoC 763573 c.204G>C synonymous_variant 0.23
rpoC 763594 c.225C>T synonymous_variant 0.23
rpoC 763603 c.234C>T synonymous_variant 0.23
rpoC 763606 c.237C>T synonymous_variant 0.21
rpoC 763636 c.267T>C synonymous_variant 0.24
rpoC 763657 c.288G>A synonymous_variant 0.25
rpoC 763660 c.291T>G synonymous_variant 0.26
rpoC 763675 c.306C>G synonymous_variant 0.27
rpoC 763696 c.327T>C synonymous_variant 0.35
rpoC 763702 c.333C>G synonymous_variant 0.34
rpoC 763717 c.348T>C synonymous_variant 0.38
rpoC 763723 c.354G>C synonymous_variant 0.34
rpoC 763732 c.363C>G synonymous_variant 0.34
rpoC 763741 c.372C>T synonymous_variant 0.34
rpoC 763744 c.375G>C synonymous_variant 0.33
rpoC 763765 c.396T>C synonymous_variant 0.34
rpoC 763774 c.405G>C synonymous_variant 0.35
rpoC 763807 c.438T>C synonymous_variant 0.28
rpoC 763816 c.447C>G synonymous_variant 0.21
rpoC 763835 p.Ala156Met missense_variant 0.18
rpoC 763853 p.Val162Ile missense_variant 0.18
rpoC 763858 c.489A>G synonymous_variant 0.16
rpoC 764102 p.Val245Ile missense_variant 0.15
rpoC 764112 p.Tyr248Phe missense_variant 0.15
rpoC 764116 c.747C>T synonymous_variant 0.15
rpoC 764131 c.762T>C synonymous_variant 0.16
rpoC 764188 c.819A>G synonymous_variant 0.17
rpoC 764195 p.Ser276Ile missense_variant 0.16
rpoC 764203 c.834G>C synonymous_variant 0.16
rpoC 764206 c.837T>C synonymous_variant 0.15
rpoC 764215 c.846A>G synonymous_variant 0.21
rpoC 764236 c.867G>A synonymous_variant 0.25
rpoC 764248 c.879C>G synonymous_variant 0.23
rpoC 764257 c.888G>C synonymous_variant 0.2
rpoC 764266 c.897T>C synonymous_variant 0.18
rpoC 764269 c.900G>C synonymous_variant 0.19
rpoC 764272 c.903G>C synonymous_variant 0.21
rpoC 764278 c.909A>G synonymous_variant 0.22
rpoC 764338 c.969G>A synonymous_variant 0.26
rpoC 764353 c.984G>C synonymous_variant 0.23
rpoC 764365 c.996C>T synonymous_variant 0.17
rpoC 764458 c.1089G>C synonymous_variant 0.16
rpoC 764461 c.1092A>G synonymous_variant 0.16
rpoC 764489 c.1120C>T synonymous_variant 0.18
rpoC 764497 c.1128A>G synonymous_variant 0.23
rpoC 764510 c.1141C>T synonymous_variant 0.23
rpoC 764521 c.1152T>C synonymous_variant 0.19
rpoC 764527 c.1158C>T synonymous_variant 0.2
rpoC 764536 c.1167G>C synonymous_variant 0.18
rpoC 764548 c.1179G>A synonymous_variant 0.15
rpoC 764554 c.1185C>T synonymous_variant 0.14
rpoC 764560 c.1191T>C synonymous_variant 0.16
rpoC 764566 c.1197C>G synonymous_variant 0.16
rpoC 764575 c.1206T>G synonymous_variant 0.17
rpoC 764593 c.1224C>T synonymous_variant 0.15
rpoC 764611 c.1242G>T synonymous_variant 0.21
rpoC 764650 c.1281G>C synonymous_variant 0.21
rpoC 764651 c.1282_1284delTCGinsAGC synonymous_variant 0.22
rpoC 764752 c.1383G>C synonymous_variant 0.16
rpoC 764764 c.1395T>C synonymous_variant 0.18
rpoC 764809 c.1440C>T synonymous_variant 0.21
rpoC 764815 c.1446A>G synonymous_variant 0.19
rpoC 764827 c.1458G>C synonymous_variant 0.21
rpoC 765319 c.1950A>G synonymous_variant 0.21
rpoC 765326 p.His653Ala missense_variant 0.21
rpoC 765330 p.Ser654Asn missense_variant 0.21
rpoC 765346 c.1977C>G synonymous_variant 0.21
rpoC 765349 c.1980T>C synonymous_variant 0.2
rpoC 765352 c.1983G>C synonymous_variant 0.23
rpoC 765383 p.Met672Leu missense_variant 0.24
rpoC 765404 p.Leu679Val missense_variant 0.26
rpoC 765409 c.2040T>C synonymous_variant 0.23
rpoC 765421 c.2052C>G synonymous_variant 0.22
rpoC 765451 c.2082C>A synonymous_variant 0.21
rpoC 765478 c.2109T>C synonymous_variant 0.22
rpoC 765499 c.2130C>G synonymous_variant 0.19
rpoC 765529 c.2160C>T synonymous_variant 0.26
rpoC 765541 c.2172C>G synonymous_variant 0.28
rpoC 765553 c.2184C>T synonymous_variant 0.29
rpoC 765556 c.2187G>C synonymous_variant 0.28
rpoC 765559 c.2190G>C synonymous_variant 0.29
rpoC 765580 c.2211G>C synonymous_variant 0.33
rpoC 765613 p.His748Gln missense_variant 0.34
rpoC 765625 c.2256C>G synonymous_variant 0.33
rpoC 765631 p.Asp754Glu missense_variant 0.33
rpoC 765700 c.2331T>C synonymous_variant 0.32
rpoC 765734 c.2365T>C synonymous_variant 0.32
rpoC 765739 c.2370G>T synonymous_variant 0.28
rpoC 765751 c.2382C>G synonymous_variant 0.25
rpoC 765753 p.Asp795Ala missense_variant 0.25
rpoC 765772 c.2403C>G synonymous_variant 0.24
rpoC 765784 c.2415C>G synonymous_variant 0.23
rpoC 765787 c.2418C>T synonymous_variant 0.23
rpoC 765793 c.2424C>G synonymous_variant 0.22
rpoC 765796 c.2427C>T synonymous_variant 0.19
rpoC 765811 c.2442T>C synonymous_variant 0.16
rpoC 765826 c.2457T>C synonymous_variant 0.21
rpoC 765835 c.2466C>T synonymous_variant 0.21
rpoC 765850 c.2481G>C synonymous_variant 0.26
rpoC 765883 c.2514C>G synonymous_variant 0.32
rpoC 765886 c.2517C>G synonymous_variant 0.31
rpoC 765892 c.2523T>C synonymous_variant 0.32
rpoC 765937 c.2568T>C synonymous_variant 0.25
rpoC 765947 c.2578T>C synonymous_variant 0.28
rpoC 765967 c.2598C>T synonymous_variant 0.24
rpoC 765982 c.2613C>G synonymous_variant 0.27
rpoC 765994 c.2625A>T synonymous_variant 0.27
rpoC 766010 c.2641_2642delTCinsAG synonymous_variant 0.26
rpoC 766021 c.2652G>C synonymous_variant 0.26
rpoC 766027 c.2658G>C synonymous_variant 0.28
rpoC 766043 p.Gln892Glu missense_variant 0.22
rpoC 766054 c.2685C>G synonymous_variant 0.24
rpoC 766082 p.Ala905Gln missense_variant 0.25
rpoC 766096 c.2727G>C synonymous_variant 0.25
rpoC 766129 c.2760C>G synonymous_variant 0.18
rpoC 766135 c.2766G>A synonymous_variant 0.16
rpoC 766381 c.3012C>T synonymous_variant 0.18
rpoC 766384 c.3015A>G synonymous_variant 0.18
rpoC 766390 c.3021C>T synonymous_variant 0.18
rpoC 766393 c.3024C>G synonymous_variant 0.2
rpoC 766408 c.3039C>G synonymous_variant 0.2
rpoC 766411 c.3042C>G synonymous_variant 0.2
rpoC 766426 c.3057C>T synonymous_variant 0.26
rpoC 766447 c.3078T>C synonymous_variant 0.32
rpoC 766462 c.3093G>C synonymous_variant 0.35
rpoC 766483 c.3114G>C synonymous_variant 0.32
rpoC 766484 p.Val1039Ile missense_variant 0.32
rpoC 766492 c.3123T>C synonymous_variant 0.35
rpoC 766522 c.3153C>G synonymous_variant 0.38
rpoC 766528 c.3159T>C synonymous_variant 0.37
rpoC 766531 c.3162G>C synonymous_variant 0.35
rpoC 766540 p.Asp1057Glu missense_variant 0.4
rpoC 766549 c.3180G>C synonymous_variant 0.32
rpoC 766573 c.3204T>C synonymous_variant 0.22
rpoC 766582 c.3213C>G synonymous_variant 0.21
rpoC 766583 p.Gly1072Ser missense_variant 0.2
rpoC 766591 c.3222A>G synonymous_variant 0.2
rpoC 766594 c.3225G>C synonymous_variant 0.21
rpoC 766597 c.3228C>G synonymous_variant 0.22
rpoC 766607 p.Ile1080Leu missense_variant 0.24
rpoC 766630 c.3261G>C synonymous_variant 0.21
rpoC 766657 c.3288A>G synonymous_variant 0.29
rpoC 766672 c.3303T>C synonymous_variant 0.26
rpoC 766673 p.Gly1102Asn missense_variant 0.26
rpoC 766726 c.3357T>C synonymous_variant 0.32
rpoC 766738 c.3369G>C synonymous_variant 0.3
rpoC 766765 c.3396A>C synonymous_variant 0.34
rpoC 766774 c.3405T>C synonymous_variant 0.36
rpoC 766801 c.3432C>G synonymous_variant 0.35
rpoC 766804 c.3435A>G synonymous_variant 0.36
rpoC 766861 c.3492G>C synonymous_variant 0.28
rpoC 766864 c.3495G>C synonymous_variant 0.28
rpoC 766900 c.3531T>C synonymous_variant 0.31
rpoC 766933 c.3564A>G synonymous_variant 0.32
rpoC 766945 c.3576A>G synonymous_variant 0.32
rpoC 766963 c.3594T>C synonymous_variant 0.31
rpoC 766972 c.3603G>C synonymous_variant 0.36
rpoC 766996 c.3627C>T synonymous_variant 0.34
rpoC 767009 c.3640_3642delTCGinsAGC synonymous_variant 0.23
rpoC 767014 c.3645G>C synonymous_variant 0.23
rpoC 767033 c.3664_3666delTCGinsAGC synonymous_variant 0.25
rpoC 767059 c.3690T>G synonymous_variant 0.36
rpoC 767062 c.3693C>A synonymous_variant 0.35
rpoC 767098 c.3729T>C synonymous_variant 0.32
rpoC 767119 c.3750A>G synonymous_variant 0.3
rpoC 767134 c.3765C>A synonymous_variant 0.26
rpoC 767158 c.3789T>C synonymous_variant 0.22
rpoC 767180 p.Ala1271Gln missense_variant 0.19
rpoC 767191 c.3822C>G synonymous_variant 0.2
rpoC 767206 c.3837C>G synonymous_variant 0.24
rpoC 767209 c.3840T>C synonymous_variant 0.24
rpoC 767212 c.3843G>C synonymous_variant 0.23
rpoC 767221 c.3852C>G synonymous_variant 0.24
rpoC 767230 c.3861G>C synonymous_variant 0.22
rpoC 767233 c.3864T>C synonymous_variant 0.21
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
mmpL5 777170 c.1311T>C synonymous_variant 0.18
mmpL5 777176 p.Glu435Asp missense_variant 0.16
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781595 c.36T>C synonymous_variant 0.17
rpsL 781605 p.Ile16Val missense_variant 0.16
rpsL 781608 p.Ser17Ala missense_variant 0.17
rpsL 781628 c.69T>C synonymous_variant 0.24
rpsL 781631 c.72G>C synonymous_variant 0.26
rpsL 781649 c.90T>C synonymous_variant 0.28
rpsL 781655 c.96T>C synonymous_variant 0.28
rpsL 781682 c.123T>C synonymous_variant 0.21
rpsL 781700 c.141G>C synonymous_variant 0.21
rpsL 781703 c.144G>T synonymous_variant 0.22
rpsL 781715 c.156T>C synonymous_variant 0.2
rpsL 781728 c.169T>C synonymous_variant 0.17
rpsL 781736 c.177T>C synonymous_variant 0.16
rpsL 781742 c.183C>T synonymous_variant 0.17
rpsL 781748 c.189C>G synonymous_variant 0.18
rpsL 781754 c.195G>C synonymous_variant 0.18
rpsL 781760 c.201T>C synonymous_variant 0.2
rpsL 781772 c.213C>A synonymous_variant 0.2
rpsL 781808 c.249C>T synonymous_variant 0.23
rpsL 781811 c.252C>T synonymous_variant 0.22
rpsL 781832 c.273T>C synonymous_variant 0.21
rpsL 781838 c.279G>C synonymous_variant 0.19
rpsL 781841 c.282C>G synonymous_variant 0.2
rpsL 781865 c.306G>C synonymous_variant 0.16
rpsL 781868 c.309T>C synonymous_variant 0.16
rpsL 781871 c.312G>C synonymous_variant 0.16
rpsL 781877 c.318T>C synonymous_variant 0.18
rpsL 781892 c.333A>G synonymous_variant 0.18
rpsL 781898 c.339A>T synonymous_variant 0.19
rpsL 781916 c.357T>C synonymous_variant 0.18
rpsL 781929 p.Gly124Ser missense_variant 0.19
rplC 800654 c.-155T>C upstream_gene_variant 0.15
rplC 800693 c.-116A>G upstream_gene_variant 0.21
rplC 800703 c.-106T>C upstream_gene_variant 0.22
rplC 800715 c.-94A>C upstream_gene_variant 0.24
rplC 800720 c.-89T>C upstream_gene_variant 0.24
rplC 800723 c.-86C>G upstream_gene_variant 0.25
rplC 800747 c.-62C>G upstream_gene_variant 0.26
rplC 800771 c.-38C>T upstream_gene_variant 0.22
rplC 800794 c.-15A>G upstream_gene_variant 0.17
rplC 800796 c.-13A>G upstream_gene_variant 0.17
rplC 800798 c.-10_-9delGG upstream_gene_variant 0.17
rplC 800814 c.6A>G synonymous_variant 0.16
rplC 800817 c.9A>T synonymous_variant 0.16
rplC 801300 c.492C>G synonymous_variant 0.18
rplC 801309 c.501C>G synonymous_variant 0.17
rplC 801312 c.504G>C synonymous_variant 0.2
rplC 801321 c.513C>T synonymous_variant 0.19
rplC 801324 c.516T>C synonymous_variant 0.19
rplC 801339 c.531T>C synonymous_variant 0.19
rplC 801341 p.Leu178Gln missense_variant 0.19
rplC 801348 c.540T>G synonymous_variant 0.22
rplC 801357 c.549T>C synonymous_variant 0.24
rplC 801367 p.Ala187Thr missense_variant 0.28
rplC 801402 c.594T>C synonymous_variant 0.18
rplC 801405 c.597T>C synonymous_variant 0.19
rplC 801423 c.615G>C synonymous_variant 0.16
rplC 801427 p.Met207Val missense_variant 0.16
rplC 801438 c.630T>C synonymous_variant 0.22
rplC 801442 p.Ile212Val missense_variant 0.23
fbiC 1303545 c.615A>G synonymous_variant 0.17
fbiC 1303575 c.645G>C synonymous_variant 0.19
fbiC 1303590 c.660A>G synonymous_variant 0.18
fbiC 1303728 c.798G>A synonymous_variant 0.18
fbiC 1303731 c.801A>C synonymous_variant 0.18
fbiC 1303732 p.Ser268Ala missense_variant 0.16
fbiC 1303737 c.807G>A synonymous_variant 0.16
fbiC 1303746 c.816T>C synonymous_variant 0.16
fbiC 1303755 c.825T>C synonymous_variant 0.17
fbiC 1303761 c.831T>C synonymous_variant 0.2
fbiC 1303785 c.855G>C synonymous_variant 0.18
fbiC 1303818 c.888C>G synonymous_variant 0.14
fbiC 1303836 c.906G>C synonymous_variant 0.19
fbiC 1303845 c.915C>G synonymous_variant 0.17
fbiC 1303846 p.Phe306Val missense_variant 0.17
fbiC 1303854 c.924T>C synonymous_variant 0.19
fbiC 1303860 c.930A>C synonymous_variant 0.18
fbiC 1303884 c.954T>G synonymous_variant 0.16
fbiC 1303914 c.984C>G synonymous_variant 0.17
fbiC 1303920 c.990C>T synonymous_variant 0.14
fbiC 1304127 c.1197A>G synonymous_variant 0.26
fbiC 1304132 p.Ala401Gly missense_variant 0.29
fbiC 1304142 c.1212G>C synonymous_variant 0.42
fbiC 1304161 p.Arg411Ser missense_variant 0.23
fbiC 1304169 c.1239T>C synonymous_variant 0.22
fbiC 1304174 p.Val415Ala missense_variant 0.21
fbiC 1304184 c.1254G>C synonymous_variant 0.22
fbiC 1304187 c.1257T>C synonymous_variant 0.24
fbiC 1304208 c.1278C>T synonymous_variant 0.17
fbiC 1304443 p.Ala505Thr missense_variant 1.0
fbiC 1304553 c.1623C>T synonymous_variant 0.17
fbiC 1304559 p.Glu543Asp missense_variant 0.17
fbiC 1304565 c.1635C>G synonymous_variant 0.16
fbiC 1304568 c.1638T>C synonymous_variant 0.18
fbiC 1304580 c.1650T>C synonymous_variant 0.25
fbiC 1304613 c.1683T>C synonymous_variant 0.19
fbiC 1304634 c.1704C>G synonymous_variant 0.16
fbiC 1304640 c.1710A>C synonymous_variant 0.16
fbiC 1304742 c.1812T>C synonymous_variant 0.17
fbiC 1304748 c.1818T>C synonymous_variant 0.19
fbiC 1304757 c.1827A>G synonymous_variant 0.2
fbiC 1304778 c.1848T>C synonymous_variant 0.26
fbiC 1304784 c.1854T>C synonymous_variant 0.26
fbiC 1304787 c.1857T>G synonymous_variant 0.27
fbiC 1304808 c.1878C>G synonymous_variant 0.25
fbiC 1304811 c.1881C>G synonymous_variant 0.25
fbiC 1304817 c.1887T>C synonymous_variant 0.26
fbiC 1304829 c.1899T>C synonymous_variant 0.24
fbiC 1304832 c.1902C>T synonymous_variant 0.26
fbiC 1304853 c.1923C>T synonymous_variant 0.26
fbiC 1304856 c.1926C>G synonymous_variant 0.27
fbiC 1304869 c.1939C>T synonymous_variant 0.26
fbiC 1304875 p.Ile649Val missense_variant 0.28
fbiC 1304883 p.Glu651Asp missense_variant 0.29
fbiC 1304891 p.Ile654Thr missense_variant 0.29
fbiC 1304893 p.Gly655Ser missense_variant 0.29
fbiC 1304907 c.1977C>G synonymous_variant 0.28
fbiC 1304910 c.1980G>C synonymous_variant 0.29
fbiC 1304916 c.1986T>C synonymous_variant 0.27
fbiC 1304928 c.1998T>C synonymous_variant 0.34
fbiC 1304937 c.2007G>C synonymous_variant 0.32
fbiC 1304958 c.2028T>G synonymous_variant 0.35
fbiC 1304983 c.2053C>T synonymous_variant 0.32
fbiC 1304994 c.2064A>G synonymous_variant 0.23
fbiC 1304995 p.Leu689Met missense_variant 0.23
fbiC 1305006 c.2076A>G synonymous_variant 0.21
fbiC 1305012 c.2082G>C synonymous_variant 0.19
fbiC 1305015 c.2085G>C synonymous_variant 0.2
atpE 1460852 c.-193C>G upstream_gene_variant 0.15
atpE 1460858 c.-187C>G upstream_gene_variant 0.16
atpE 1460861 c.-184C>G upstream_gene_variant 0.21
atpE 1460882 c.-163T>C upstream_gene_variant 0.23
atpE 1460894 c.-151A>G upstream_gene_variant 0.21
atpE 1460897 c.-148A>C upstream_gene_variant 0.21
atpE 1460900 c.-145T>C upstream_gene_variant 0.2
atpE 1460915 c.-130C>G upstream_gene_variant 0.15
atpE 1460918 c.-127A>G upstream_gene_variant 0.15
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471923 n.78T>C non_coding_transcript_exon_variant 0.2
rrs 1471925 n.80T>C non_coding_transcript_exon_variant 0.2
rrs 1471932 n.87A>G non_coding_transcript_exon_variant 0.2
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 0.22
rrs 1471969 n.124T>C non_coding_transcript_exon_variant 0.15
rrs 1471970 n.125G>A non_coding_transcript_exon_variant 0.15
rrs 1472028 n.183A>T non_coding_transcript_exon_variant 0.22
rrs 1472029 n.184C>T non_coding_transcript_exon_variant 0.22
rrs 1472030 n.185G>T non_coding_transcript_exon_variant 0.23
rrs 1472031 n.186G>A non_coding_transcript_exon_variant 0.21
rrs 1472033 n.188A>G non_coding_transcript_exon_variant 0.21
rrs 1472034 n.189T>C non_coding_transcript_exon_variant 0.22
rrs 1472044 n.199G>T non_coding_transcript_exon_variant 0.21
rrs 1472045 n.200T>A non_coding_transcript_exon_variant 0.21
rrs 1472053 n.211_212delGC non_coding_transcript_exon_variant 0.26
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 0.24
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.39
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.21
rrs 1472266 n.421C>T non_coding_transcript_exon_variant 0.12
rrs 1472969 n.1124A>G non_coding_transcript_exon_variant 0.29
rrs 1472970 n.1125C>G non_coding_transcript_exon_variant 0.27
rrs 1472977 n.1132G>C non_coding_transcript_exon_variant 0.29
rrs 1472978 n.1133T>C non_coding_transcript_exon_variant 0.29
rrl 1473668 n.11C>T non_coding_transcript_exon_variant 0.14
rrl 1473756 n.99G>A non_coding_transcript_exon_variant 0.29
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.33
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.64
rrl 1473877 n.220G>A non_coding_transcript_exon_variant 0.27
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.18
rrl 1473943 n.286G>T non_coding_transcript_exon_variant 0.25
rrl 1473945 n.288T>A non_coding_transcript_exon_variant 0.25
rrl 1473946 n.289A>T non_coding_transcript_exon_variant 0.25
rrl 1473986 n.329T>C non_coding_transcript_exon_variant 0.33
rrl 1473987 n.330G>A non_coding_transcript_exon_variant 0.31
rrl 1473995 n.338G>T non_coding_transcript_exon_variant 0.29
rrl 1474001 n.344C>T non_coding_transcript_exon_variant 0.29
rrl 1474009 n.352A>G non_coding_transcript_exon_variant 0.21
rrl 1474012 n.355C>T non_coding_transcript_exon_variant 0.21
rrl 1474093 n.436G>T non_coding_transcript_exon_variant 0.3
rrl 1474099 n.442G>A non_coding_transcript_exon_variant 0.36
rrl 1474103 n.446A>T non_coding_transcript_exon_variant 0.36
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.3
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.25
rrl 1474181 n.524C>T non_coding_transcript_exon_variant 0.28
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.29
rrl 1474425 n.768A>G non_coding_transcript_exon_variant 0.17
rrl 1474428 n.771C>T non_coding_transcript_exon_variant 0.15
rrl 1474639 n.982G>A non_coding_transcript_exon_variant 0.38
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.13
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.14
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 0.19
rrl 1474904 n.1247G>A non_coding_transcript_exon_variant 0.13
rrl 1474956 n.1299C>T non_coding_transcript_exon_variant 0.29
rrl 1474960 n.1303C>G non_coding_transcript_exon_variant 0.31
rrl 1474963 n.1306G>T non_coding_transcript_exon_variant 0.23
rrl 1474964 n.1307T>A non_coding_transcript_exon_variant 0.23
rrl 1474965 n.1308G>C non_coding_transcript_exon_variant 0.23
rrl 1474970 n.1313G>A non_coding_transcript_exon_variant 0.25
rrl 1475006 n.1349A>T non_coding_transcript_exon_variant 0.3
rrl 1475061 n.1404C>T non_coding_transcript_exon_variant 0.2
rrl 1475088 n.1431A>T non_coding_transcript_exon_variant 0.27
rrl 1475199 n.1542G>A non_coding_transcript_exon_variant 0.44
rrl 1475206 n.1549C>T non_coding_transcript_exon_variant 0.29
rrl 1475209 n.1552G>C non_coding_transcript_exon_variant 0.33
rrl 1475213 n.1556C>T non_coding_transcript_exon_variant 0.33
rrl 1475249 n.1592T>C non_coding_transcript_exon_variant 0.5
rrl 1475252 n.1595C>T non_coding_transcript_exon_variant 0.45
rrl 1475266 n.1609T>C non_coding_transcript_exon_variant 0.5
rrl 1475267 n.1610G>A non_coding_transcript_exon_variant 0.5
rrl 1475275 n.1618C>T non_coding_transcript_exon_variant 0.45
rrl 1475276 n.1619T>C non_coding_transcript_exon_variant 0.5
rrl 1475291 n.1634A>C non_coding_transcript_exon_variant 0.44
rrl 1475313 n.1656G>A non_coding_transcript_exon_variant 0.57
rrl 1475315 n.1658A>T non_coding_transcript_exon_variant 0.5
rrl 1475355 n.1698C>T non_coding_transcript_exon_variant 0.4
rrl 1475369 n.1712G>T non_coding_transcript_exon_variant 0.38
rrl 1475402 n.1745C>T non_coding_transcript_exon_variant 0.36
rrl 1475419 n.1762C>T non_coding_transcript_exon_variant 0.29
rrl 1475429 n.1772G>A non_coding_transcript_exon_variant 0.29
rrl 1475436 n.1779C>T non_coding_transcript_exon_variant 0.38
rrl 1475483 n.1826C>T non_coding_transcript_exon_variant 0.47
rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 0.35
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.55
rrl 1475599 n.1942A>G non_coding_transcript_exon_variant 0.29
rrl 1475608 n.1951T>C non_coding_transcript_exon_variant 0.29
rrl 1475642 n.1985T>C non_coding_transcript_exon_variant 0.27
rrl 1475657 n.2000A>G non_coding_transcript_exon_variant 0.43
rrl 1475659 n.2002G>T non_coding_transcript_exon_variant 0.4
rrl 1475765 n.2111delG non_coding_transcript_exon_variant 0.21
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.29
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.4
rrl 1476214 n.2557G>A non_coding_transcript_exon_variant 0.23
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.27
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.15
rrl 1476583 n.2926G>A non_coding_transcript_exon_variant 0.19
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.19
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 0.2
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.2
rrl 1476603 n.2946G>A non_coding_transcript_exon_variant 0.21
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.18
rrl 1476689 n.3032A>T non_coding_transcript_exon_variant 0.16
rrl 1476690 n.3033C>T non_coding_transcript_exon_variant 0.16
rrl 1476693 n.3036G>A non_coding_transcript_exon_variant 0.16
rrl 1476695 n.3038T>A non_coding_transcript_exon_variant 0.16
rrl 1476716 n.3059A>C non_coding_transcript_exon_variant 0.16
fabG1 1673633 p.Ser65Asn missense_variant 0.14
fabG1 1673641 p.Val68Ile missense_variant 0.18
inhA 1673646 c.-556T>C upstream_gene_variant 0.18
fabG1 1673657 p.Thr73Lys missense_variant 0.19
inhA 1673660 c.-542C>A upstream_gene_variant 0.19
inhA 1673664 c.-538A>C upstream_gene_variant 0.18
inhA 1673667 c.-535A>G upstream_gene_variant 0.19
inhA 1673679 c.-523T>C upstream_gene_variant 0.24
inhA 1673685 c.-517C>T upstream_gene_variant 0.26
fabG1 1673710 p.Leu91Ile missense_variant 0.28
fabG1 1673716 p.Ala93Lys missense_variant 0.24
fabG1 1673733 p.Met98Ile missense_variant 0.19
inhA 1673748 c.-454A>G upstream_gene_variant 0.16
fabG1 1673941 p.Ala168Ser missense_variant 0.14
inhA 1673955 c.-247G>C upstream_gene_variant 0.15
inhA 1674624 c.423A>C synonymous_variant 0.16
inhA 1674630 c.429C>G synonymous_variant 0.15
inhA 1674672 c.471C>G synonymous_variant 0.17
inhA 1674801 c.600T>C synonymous_variant 0.15
inhA 1674822 c.621C>G synonymous_variant 0.24
inhA 1674828 c.627G>A synonymous_variant 0.21
inhA 1674846 p.Ile215Met missense_variant 0.24
inhA 1674855 c.654C>G synonymous_variant 0.24
inhA 1674864 c.663C>T synonymous_variant 0.25
inhA 1674870 c.669T>C synonymous_variant 0.27
inhA 1674879 c.678T>C synonymous_variant 0.27
inhA 1674903 c.702T>C synonymous_variant 0.25
inhA 1674904 p.Ala235Pro missense_variant 0.25
inhA 1674909 c.708G>A synonymous_variant 0.26
inhA 1674942 c.741T>G synonymous_variant 0.27
inhA 1674960 c.759C>G synonymous_variant 0.16
rpsA 1833554 p.Thr5Ala missense_variant 0.19
rpsA 1833568 c.27G>C synonymous_variant 0.2
rpsA 1833589 c.48A>T synonymous_variant 0.21
rpsA 1833595 c.54T>C synonymous_variant 0.23
rpsA 1833661 c.120A>G synonymous_variant 0.23
rpsA 1833667 c.126C>G synonymous_variant 0.23
rpsA 1833721 c.180A>G synonymous_variant 0.22
rpsA 1833724 c.183C>G synonymous_variant 0.21
rpsA 1833727 c.186G>C synonymous_variant 0.22
rpsA 1833742 c.201A>G synonymous_variant 0.25
rpsA 1833745 c.204G>C synonymous_variant 0.26
rpsA 1833748 c.207C>G synonymous_variant 0.28
rpsA 1833787 c.246C>G synonymous_variant 0.28
rpsA 1833790 c.249T>C synonymous_variant 0.27
rpsA 1833802 c.261A>G synonymous_variant 0.3
rpsA 1833811 c.270G>T synonymous_variant 0.3
rpsA 1833838 c.297G>C synonymous_variant 0.34
rpsA 1833841 c.300C>G synonymous_variant 0.35
rpsA 1833847 c.306C>G synonymous_variant 0.33
rpsA 1833856 c.315A>G synonymous_variant 0.36
rpsA 1833874 c.333T>C synonymous_variant 0.37
rpsA 1833928 c.387G>C synonymous_variant 0.38
rpsA 1833940 c.399C>G synonymous_variant 0.39
rpsA 1833971 c.430C>T synonymous_variant 0.31
rpsA 1833979 c.438T>C synonymous_variant 0.3
rpsA 1834000 c.459G>C synonymous_variant 0.29
rpsA 1834021 c.480C>T synonymous_variant 0.28
rpsA 1834030 c.489C>G synonymous_variant 0.29
rpsA 1834099 c.558C>G synonymous_variant 0.22
rpsA 1834102 c.561T>C synonymous_variant 0.21
rpsA 1834105 c.564C>G synonymous_variant 0.22
rpsA 1834108 c.567C>G synonymous_variant 0.23
rpsA 1834123 c.582C>G synonymous_variant 0.22
rpsA 1834177 c.636A>C synonymous_variant 1.0
rpsA 1834189 c.648G>C synonymous_variant 0.16
rpsA 1834195 c.654G>C synonymous_variant 0.18
rpsA 1834210 c.669C>T synonymous_variant 0.21
rpsA 1834222 c.681T>C synonymous_variant 0.2
rpsA 1834231 c.690T>C synonymous_variant 0.18
rpsA 1834234 c.693G>C synonymous_variant 0.19
rpsA 1834249 c.708T>C synonymous_variant 0.24
rpsA 1834261 c.720A>G synonymous_variant 0.24
rpsA 1834264 c.723G>C synonymous_variant 0.25
rpsA 1834303 c.762T>C synonymous_variant 0.24
rpsA 1834306 c.765T>C synonymous_variant 0.21
rpsA 1834348 c.807T>C synonymous_variant 0.2
rpsA 1834366 c.825A>G synonymous_variant 0.21
rpsA 1834375 c.834G>A synonymous_variant 0.23
rpsA 1834378 c.837T>C synonymous_variant 0.23
rpsA 1834396 c.855G>C synonymous_variant 0.23
rpsA 1834411 c.870T>C synonymous_variant 0.27
rpsA 1834417 c.876G>C synonymous_variant 0.25
rpsA 1834423 c.882G>C synonymous_variant 0.27
rpsA 1834435 c.894G>C synonymous_variant 0.29
rpsA 1834451 c.910T>C synonymous_variant 0.3
rpsA 1834465 c.924T>C synonymous_variant 0.33
rpsA 1834468 c.927A>G synonymous_variant 0.32
rpsA 1834489 c.948T>C synonymous_variant 0.32
rpsA 1834501 c.960G>C synonymous_variant 0.3
rpsA 1834510 c.969C>T synonymous_variant 0.27
rpsA 1834513 c.972C>G synonymous_variant 0.29
rpsA 1834528 c.987T>C synonymous_variant 0.29
rpsA 1834540 c.999G>C synonymous_variant 0.27
rpsA 1834546 c.1005T>C synonymous_variant 0.26
rpsA 1834609 c.1068T>C synonymous_variant 0.36
rpsA 1834618 c.1077G>C synonymous_variant 0.34
rpsA 1834633 c.1092A>G synonymous_variant 0.3
rpsA 1834639 c.1098T>C synonymous_variant 0.31
rpsA 1834654 p.Glu371Asp missense_variant 0.28
rpsA 1834684 c.1143C>T synonymous_variant 0.26
rpsA 1834690 c.1149T>C synonymous_variant 0.25
rpsA 1834732 c.1191T>C synonymous_variant 0.19
rpsA 1834733 p.Ala398Ser missense_variant 0.19
rpsA 1834738 c.1197A>G synonymous_variant 0.2
rpsA 1834753 c.1212T>C synonymous_variant 0.24
rpsA 1834765 p.Glu408Asp missense_variant 0.24
rpsA 1834775 p.Ala412Thr missense_variant 0.23
rpsA 1834780 c.1239A>G synonymous_variant 0.21
rpsA 1834786 c.1245A>G synonymous_variant 0.19
rpsA 1834789 c.1248T>C synonymous_variant 0.2
rpsA 1834792 c.1251G>C synonymous_variant 0.21
tlyA 1917972 c.33A>G synonymous_variant 1.0
tlyA 1917981 c.42G>C synonymous_variant 0.17
tlyA 1917990 c.51G>C synonymous_variant 0.21
tlyA 1917993 c.54A>G synonymous_variant 0.21
tlyA 1917996 c.57A>G synonymous_variant 0.22
tlyA 1918002 c.63A>G synonymous_variant 0.21
ndh 2101920 c.1123A>C synonymous_variant 0.16
ndh 2101924 c.1119T>G synonymous_variant 0.2
ndh 2101939 c.1104A>G synonymous_variant 0.23
ndh 2101960 c.1083A>G synonymous_variant 0.21
ndh 2101963 c.1080G>A synonymous_variant 0.19
ndh 2101966 c.1077T>G synonymous_variant 0.19
ndh 2101972 c.1071G>C synonymous_variant 0.17
ndh 2101988 p.Ala352Asp missense_variant 0.14
ndh 2102218 c.825C>A synonymous_variant 0.18
ndh 2102227 c.816C>T synonymous_variant 0.21
ndh 2102230 c.813G>C synonymous_variant 0.21
ndh 2102233 c.810G>A synonymous_variant 0.23
ndh 2102302 c.741G>C synonymous_variant 0.15
ndh 2102671 c.372T>G synonymous_variant 0.16
ndh 2102680 c.363T>C synonymous_variant 0.17
ndh 2102686 c.357G>C synonymous_variant 0.16
ndh 2102695 c.348C>T synonymous_variant 0.16
ndh 2102700 c.343C>T synonymous_variant 0.15
katG 2154724 p.Arg463Leu missense_variant 1.0
katG 2155661 p.Val151Ile missense_variant 0.15
katG 2155677 c.435C>G synonymous_variant 0.26
katG 2155680 c.432G>C synonymous_variant 0.29
katG 2155691 c.421T>C synonymous_variant 0.28
katG 2155695 c.417C>G synonymous_variant 0.28
katG 2155704 c.408C>G synonymous_variant 0.28
katG 2155716 c.396T>G synonymous_variant 0.23
katG 2155722 c.390G>C synonymous_variant 0.23
katG 2155728 c.384G>C synonymous_variant 0.19
PPE35 2167926 p.Leu896Ser missense_variant 1.0
PPE35 2169320 p.Leu431Phe missense_variant 0.27
PPE35 2170048 p.Leu189Val missense_variant 0.21
PPE35 2170053 p.Thr187Ser missense_variant 0.16
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
pncA 2289987 c.-746C>T upstream_gene_variant 0.25
pncA 2289991 c.-750G>C upstream_gene_variant 0.2
pncA 2289994 c.-753A>G upstream_gene_variant 0.21
pncA 2289997 c.-756G>C upstream_gene_variant 0.2
pncA 2290009 c.-768A>G upstream_gene_variant 0.21
pncA 2290015 c.-774A>C upstream_gene_variant 0.17
pncA 2290030 c.-791_-789delAATinsCAC upstream_gene_variant 0.17
pncA 2290038 c.-797G>A upstream_gene_variant 0.15
pncA 2290042 c.-801T>C upstream_gene_variant 0.15
kasA 2517950 c.-165C>G upstream_gene_variant 0.25
kasA 2517989 c.-126T>C upstream_gene_variant 0.16
kasA 2517993 c.-122G>T upstream_gene_variant 0.16
kasA 2518162 c.48G>A synonymous_variant 0.17
kasA 2518174 c.60A>G synonymous_variant 0.22
kasA 2518190 p.Ser26Ala missense_variant 0.28
kasA 2518199 p.Ile29Val missense_variant 0.27
kasA 2518220 c.106C>T synonymous_variant 0.29
kasA 2518234 c.120G>A synonymous_variant 0.24
kasA 2518248 p.Ala45Val missense_variant 0.21
kasA 2518504 c.390T>C synonymous_variant 0.16
kasA 2518519 c.405G>C synonymous_variant 0.16
kasA 2518540 c.426T>C synonymous_variant 0.17
kasA 2518567 c.453G>C synonymous_variant 0.16
kasA 2518570 c.456G>C synonymous_variant 0.16
kasA 2518588 c.474T>C synonymous_variant 0.18
kasA 2518591 c.477G>C synonymous_variant 0.18
kasA 2518609 p.Met165Ile missense_variant 0.15
kasA 2518732 c.618C>G synonymous_variant 0.15
kasA 2518744 c.630C>T synonymous_variant 0.17
kasA 2518747 c.633C>G synonymous_variant 0.16
kasA 2518768 c.654C>T synonymous_variant 0.24
kasA 2518777 c.663C>T synonymous_variant 0.25
kasA 2518783 c.669T>C synonymous_variant 0.22
kasA 2518789 c.675G>C synonymous_variant 0.19
kasA 2518792 c.678C>A synonymous_variant 0.18
kasA 2518795 c.681C>G synonymous_variant 0.18
kasA 2518825 c.711T>C synonymous_variant 0.19
kasA 2518879 c.765A>G synonymous_variant 0.2
kasA 2518885 c.771T>C synonymous_variant 0.18
kasA 2518906 c.792A>G synonymous_variant 0.16
kasA 2518910 p.Leu266Met missense_variant 0.15
kasA 2519062 c.948T>G synonymous_variant 0.22
kasA 2519068 c.954C>T synonymous_variant 0.21
kasA 2519072 p.Ala320Thr missense_variant 0.2
kasA 2519107 c.993T>C synonymous_variant 0.29
kasA 2519108 p.Asp332Gln missense_variant 0.28
kasA 2519122 c.1008G>C synonymous_variant 0.34
kasA 2519137 c.1023T>G synonymous_variant 0.28
kasA 2519158 c.1044C>T synonymous_variant 0.27
kasA 2519167 c.1053T>G synonymous_variant 0.27
kasA 2519173 c.1059C>G synonymous_variant 0.27
ahpC 2726336 c.144G>C synonymous_variant 0.17
ahpC 2726348 c.156T>C synonymous_variant 0.2
ahpC 2726357 c.165A>G synonymous_variant 0.18
ahpC 2726657 c.465A>C synonymous_variant 0.17
ahpC 2726669 p.Asp159Glu missense_variant 0.17
ahpC 2726672 c.480G>A synonymous_variant 0.17
ahpC 2726675 c.483A>G synonymous_variant 0.16
ahpC 2726681 c.489A>C synonymous_variant 0.19
ahpC 2726687 c.495C>G synonymous_variant 0.2
ahpC 2726693 c.501C>G synonymous_variant 0.19
ahpC 2726696 c.504C>G synonymous_variant 0.17
folC 2747086 c.513A>C synonymous_variant 1.0
folC 2747239 c.360T>C synonymous_variant 0.15
folC 2747248 c.351G>C synonymous_variant 0.21
folC 2747264 p.Gly112Ala missense_variant 0.29
folC 2747266 c.333C>T synonymous_variant 0.29
folC 2747275 c.324T>C synonymous_variant 0.31
folC 2747289 p.Pro104Ala missense_variant 0.3
folC 2747290 c.309A>G synonymous_variant 0.31
folC 2747293 c.306G>A synonymous_variant 0.3
folC 2747302 c.297A>G synonymous_variant 0.38
folC 2747314 c.285A>C synonymous_variant 0.37
folC 2747317 c.282C>G synonymous_variant 0.37
folC 2747343 p.Val86Ile missense_variant 0.28
folC 2747355 p.Val82Ile missense_variant 0.24
folC 2747359 c.240C>G synonymous_variant 0.24
folC 2747362 c.237G>C synonymous_variant 0.25
folC 2747394 p.Ile69Val missense_variant 0.23
folC 2747395 c.204T>C synonymous_variant 0.23
folC 2747407 c.192T>C synonymous_variant 0.18
folC 2747772 c.-174C>G upstream_gene_variant 0.17
folC 2747790 c.-192G>C upstream_gene_variant 0.16
ribD 2987307 p.Ala157Pro missense_variant 0.22
Rv2752c 3066066 c.126T>C synonymous_variant 0.16
Rv2752c 3066075 c.117A>G synonymous_variant 0.17
thyX 3067325 c.621A>G synonymous_variant 0.19
thyX 3067349 c.597G>C synonymous_variant 0.19
thyX 3067355 c.591A>C synonymous_variant 0.2
thyX 3067367 c.579G>C synonymous_variant 0.24
thyX 3067373 c.573C>G synonymous_variant 0.25
thyX 3067391 c.555G>C synonymous_variant 0.25
thyX 3067394 c.552G>C synonymous_variant 0.25
thyX 3067439 c.507A>G synonymous_variant 0.31
thyX 3067442 c.504C>T synonymous_variant 0.31
thyX 3067445 c.501C>G synonymous_variant 0.3
thyX 3067457 c.489C>G synonymous_variant 0.28
thyX 3067462 c.484C>T synonymous_variant 0.24
thyX 3067465 p.Ile161Val missense_variant 0.25
thyX 3067466 c.480G>C synonymous_variant 0.26
thyX 3067475 c.471A>G synonymous_variant 0.29
thyX 3067490 c.456C>G synonymous_variant 0.31
thyX 3067493 c.453A>G synonymous_variant 0.3
thyX 3067510 c.436C>T synonymous_variant 0.21
thyX 3067515 p.Ser144Thr missense_variant 0.18
thyX 3067545 p.Glu134Ala missense_variant 0.16
thyX 3067549 p.Thr133Ala missense_variant 0.17
thyX 3067556 p.His130Gln missense_variant 0.23
thyX 3067559 c.387C>G synonymous_variant 0.22
thyX 3067565 p.Asp127Glu missense_variant 0.22
thyX 3067570 p.Ala126Pro missense_variant 0.23
thyX 3067577 c.369G>A synonymous_variant 0.22
thyX 3067601 p.Arg115His missense_variant 0.24
thyX 3067611 p.Lys112Thr missense_variant 0.23
thyX 3067619 c.327A>C synonymous_variant 0.22
thyX 3067631 c.315C>G synonymous_variant 0.22
thyX 3067634 c.312C>G synonymous_variant 0.21
thyX 3067661 c.285C>G synonymous_variant 0.18
thyX 3067685 c.261A>C synonymous_variant 0.2
thyX 3067691 p.Ile85Leu missense_variant 0.17
thyX 3067694 c.252G>C synonymous_variant 0.17
thyX 3067718 c.228C>G synonymous_variant 0.19
thyX 3067721 c.225T>C synonymous_variant 0.17
thyX 3067727 c.219A>C synonymous_variant 0.16
thyX 3067736 c.210C>T synonymous_variant 0.19
thyX 3067761 p.Arg62Lys missense_variant 0.17
thyX 3067765 p.Leu61Ile missense_variant 0.21
thyX 3067772 c.174C>G synonymous_variant 0.19
thyX 3067775 c.171C>T synonymous_variant 0.19
thyX 3067781 c.165C>G synonymous_variant 0.26
thyX 3067793 c.153T>C synonymous_variant 0.26
thyX 3067799 c.147G>A synonymous_variant 0.28
thyX 3067802 c.144C>G synonymous_variant 0.27
thyX 3067814 c.132T>C synonymous_variant 0.29
thyX 3067850 c.96A>C synonymous_variant 0.32
thyX 3067869 p.Thr26Ser missense_variant 0.36
thyX 3067874 c.72C>G synonymous_variant 0.34
thyX 3067877 c.69G>C synonymous_variant 0.36
thyX 3067883 c.63C>G synonymous_variant 0.33
thyX 3067886 c.60A>C synonymous_variant 0.35
thyX 3067889 c.57C>G synonymous_variant 0.32
thyX 3067898 p.Asp16Glu missense_variant 0.33
thyX 3067935 p.Thr4Ile missense_variant 0.2
thyA 3073815 c.657G>A synonymous_variant 0.16
thyA 3073839 c.633T>C synonymous_variant 0.18
thyA 3073860 c.612C>G synonymous_variant 0.17
thyA 3074187 c.285T>C synonymous_variant 0.16
thyA 3074205 p.Glu89Asp missense_variant 0.24
thyA 3074214 c.258T>C synonymous_variant 0.21
thyA 3074244 c.228A>G synonymous_variant 0.17
thyA 3074263 p.Gly70Ala missense_variant 0.15
thyA 3074268 c.204T>C synonymous_variant 0.15
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fprA 3473809 c.-198G>C upstream_gene_variant 0.28
fprA 3473812 c.-195G>A upstream_gene_variant 0.27
fprA 3473838 c.-169G>A upstream_gene_variant 0.22
fprA 3473843 c.-164C>G upstream_gene_variant 0.2
fprA 3473848 c.-159_-157delCAAinsGAG upstream_gene_variant 0.18
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
rpoA 3877553 p.Glu319Gln missense_variant 0.27
rpoA 3877571 p.Pro313Ala missense_variant 0.34
rpoA 3877587 c.921A>G synonymous_variant 0.36
rpoA 3877613 p.Ile299Val missense_variant 0.43
rpoA 3877656 c.852T>G synonymous_variant 0.36
rpoA 3877668 c.840A>G synonymous_variant 0.33
rpoA 3877679 p.Ala277Ser missense_variant 0.36
rpoA 3877686 c.822A>G synonymous_variant 0.33
rpoA 3877692 c.816G>C synonymous_variant 0.33
rpoA 3877704 c.804G>C synonymous_variant 0.29
rpoA 3877743 c.765T>C synonymous_variant 0.22
rpoA 3877764 c.744C>G synonymous_variant 0.19
rpoA 3877770 c.738A>G synonymous_variant 0.19
rpoA 3877776 c.732T>C synonymous_variant 0.23
rpoA 3877782 c.726T>C synonymous_variant 0.22
rpoA 3877791 c.717C>G synonymous_variant 0.24
rpoA 3877818 c.690A>G synonymous_variant 0.32
rpoA 3877839 c.669G>C synonymous_variant 0.34
rpoA 3877848 c.660C>T synonymous_variant 0.3
rpoA 3877857 c.651G>A synonymous_variant 0.29
rpoA 3877866 c.642G>C synonymous_variant 0.28
rpoA 3877875 c.633T>G synonymous_variant 0.27
rpoA 3877878 c.630G>C synonymous_variant 0.26
rpoA 3877890 c.618C>T synonymous_variant 0.26
rpoA 3877896 c.612G>C synonymous_variant 0.26
rpoA 3877900 p.Ser203Asn missense_variant 0.22
rpoA 3877905 c.603A>G synonymous_variant 0.23
rpoA 3877909 p.Asn200Ser missense_variant 0.24
rpoA 3877920 c.588G>C synonymous_variant 0.21
rpoA 3877923 c.585C>T synonymous_variant 0.23
rpoA 3877926 c.582G>C synonymous_variant 0.25
rpoA 3877962 c.546G>T synonymous_variant 0.28
rpoA 3877986 c.522G>C synonymous_variant 0.22
rpoA 3877989 c.519A>G synonymous_variant 0.23
rpoA 3878001 c.507A>G synonymous_variant 0.22
rpoA 3878022 c.486T>C synonymous_variant 0.17
rpoA 3878217 c.291A>G synonymous_variant 0.2
rpoA 3878226 c.282C>G synonymous_variant 0.26
rpoA 3878232 c.276G>C synonymous_variant 0.31
rpoA 3878247 c.261G>C synonymous_variant 0.41
rpoA 3878271 c.237T>C synonymous_variant 0.34
rpoA 3878284 p.Glu75Ala missense_variant 0.33
rpoA 3878292 c.216T>C synonymous_variant 0.33
rpoA 3878298 c.210A>G synonymous_variant 0.3
rpoA 3878304 c.204G>C synonymous_variant 0.28
rpoA 3878313 c.195G>C synonymous_variant 0.33
rpoA 3878322 c.186A>G synonymous_variant 0.29
rpoA 3878331 c.177A>G synonymous_variant 0.23
rpoA 3878334 c.174T>C synonymous_variant 0.23
rpoA 3878337 c.171T>C synonymous_variant 0.25
rpoA 3878346 c.162T>C synonymous_variant 0.25
rpoA 3878364 c.144A>T synonymous_variant 0.24
rpoA 3878367 c.141C>G synonymous_variant 0.23
rpoA 3878376 c.132G>C synonymous_variant 0.24
rpoA 3878385 c.123C>G synonymous_variant 0.23
rpoA 3878388 c.120C>G synonymous_variant 0.24
rpoA 3878391 c.117T>C synonymous_variant 0.24
rpoA 3878415 c.93C>T synonymous_variant 0.26
rpoA 3878424 c.84G>C synonymous_variant 0.23
rpoA 3878436 c.72A>G synonymous_variant 0.24
rpoA 3878442 c.66G>C synonymous_variant 0.19
rpoA 3878454 c.54A>C synonymous_variant 0.19
rpoA 3878472 p.Asp12Glu missense_variant 0.15
rpoA 3878484 c.24C>A synonymous_variant 0.16
rpoA 3878490 c.18C>A synonymous_variant 0.16
rpoA 3878672 c.-165A>T upstream_gene_variant 0.14
rpoA 3878683 c.-176G>C upstream_gene_variant 0.27
clpC1 4038239 c.2466T>C synonymous_variant 0.2
clpC1 4038255 p.Val817Lys missense_variant 0.17
clpC1 4038392 c.2313C>T synonymous_variant 0.15
clpC1 4038498 p.Ser736His missense_variant 0.14
clpC1 4038509 c.2196C>T synonymous_variant 0.17
clpC1 4038530 p.Glu725Asp missense_variant 0.21
clpC1 4038541 c.2164C>T synonymous_variant 0.19
clpC1 4038596 c.2109A>G synonymous_variant 0.26
clpC1 4038623 c.2082A>G synonymous_variant 0.22
clpC1 4038640 p.Asp689Asn missense_variant 0.19
clpC1 4038653 c.2052C>T synonymous_variant 0.19
clpC1 4038658 p.Lys683Gln missense_variant 0.17
clpC1 4038661 p.Ser682Thr missense_variant 0.16
clpC1 4038662 c.2043T>C synonymous_variant 0.16
clpC1 4038671 c.2034T>C synonymous_variant 0.15
clpC1 4038749 c.1956C>G synonymous_variant 0.18
clpC1 4038755 c.1950G>T synonymous_variant 0.19
clpC1 4038770 c.1935C>T synonymous_variant 0.2
clpC1 4038773 c.1932T>C synonymous_variant 0.24
clpC1 4038782 c.1923G>C synonymous_variant 0.23
clpC1 4038812 c.1893T>C synonymous_variant 0.3
clpC1 4038845 c.1860G>C synonymous_variant 0.39
clpC1 4038860 c.1845G>C synonymous_variant 0.29
clpC1 4038878 c.1827A>G synonymous_variant 0.28
clpC1 4038905 c.1800A>G synonymous_variant 0.34
clpC1 4038908 c.1797C>G synonymous_variant 0.38
clpC1 4038914 c.1791G>C synonymous_variant 0.44
clpC1 4038923 c.1780_1782delCTAinsTTG synonymous_variant 0.41
clpC1 4038953 c.1752A>G synonymous_variant 0.39
clpC1 4038956 c.1749T>C synonymous_variant 0.41
clpC1 4038965 c.1740T>C synonymous_variant 0.4
clpC1 4038971 c.1734T>C synonymous_variant 0.35
clpC1 4038974 c.1731T>C synonymous_variant 0.35
clpC1 4038989 c.1716T>C synonymous_variant 0.28
clpC1 4038997 c.1708T>C synonymous_variant 0.31
clpC1 4039004 c.1701C>G synonymous_variant 0.31
clpC1 4039022 c.1683A>G synonymous_variant 0.31
clpC1 4039064 c.1641C>T synonymous_variant 0.36
clpC1 4039097 c.1608G>C synonymous_variant 0.31
clpC1 4039103 c.1602T>C synonymous_variant 0.26
clpC1 4039106 c.1599G>C synonymous_variant 0.28
clpC1 4039112 c.1593C>G synonymous_variant 0.25
clpC1 4039121 c.1584T>C synonymous_variant 0.26
clpC1 4039142 c.1563A>G synonymous_variant 0.19
clpC1 4039145 c.1560G>C synonymous_variant 0.19
clpC1 4039169 p.Glu512Asp missense_variant 0.23
clpC1 4039172 c.1533A>G synonymous_variant 0.21
clpC1 4039178 c.1527G>C synonymous_variant 0.25
clpC1 4039183 c.1522T>C synonymous_variant 0.27
clpC1 4039186 c.1519C>T synonymous_variant 0.25
clpC1 4039226 c.1479T>C synonymous_variant 0.26
clpC1 4039229 c.1476C>G synonymous_variant 0.28
clpC1 4039274 c.1431G>C synonymous_variant 0.19
clpC1 4039286 c.1419T>C synonymous_variant 0.17
clpC1 4039295 c.1410A>C synonymous_variant 0.2
clpC1 4039298 c.1407T>C synonymous_variant 0.19
clpC1 4039319 c.1386T>C synonymous_variant 0.16
clpC1 4039322 c.1383T>C synonymous_variant 0.17
clpC1 4039328 c.1377A>C synonymous_variant 0.15
clpC1 4039339 p.Thr456Pro missense_variant 0.17
clpC1 4039349 c.1356C>T synonymous_variant 0.16
clpC1 4039352 c.1353C>G synonymous_variant 0.17
clpC1 4039364 c.1341C>G synonymous_variant 0.21
clpC1 4039391 c.1314T>G synonymous_variant 0.22
clpC1 4039463 c.1242C>G synonymous_variant 0.16
clpC1 4039466 c.1239T>C synonymous_variant 0.17
clpC1 4039469 c.1236T>C synonymous_variant 0.19
clpC1 4039481 c.1224T>C synonymous_variant 0.25
clpC1 4039484 c.1221T>C synonymous_variant 0.24
clpC1 4039517 c.1188C>G synonymous_variant 0.22
clpC1 4039556 c.1149G>C synonymous_variant 0.2
clpC1 4039559 c.1146C>G synonymous_variant 0.17
clpC1 4039562 c.1143C>G synonymous_variant 0.16
clpC1 4039565 c.1140G>T synonymous_variant 0.16
clpC1 4039570 p.Met379Leu missense_variant 0.17
clpC1 4039577 c.1128T>C synonymous_variant 0.16
clpC1 4039589 c.1116G>C synonymous_variant 0.22
clpC1 4039610 c.1095G>C synonymous_variant 0.22
clpC1 4039616 c.1089G>C synonymous_variant 0.2
clpC1 4039661 c.1044T>G synonymous_variant 0.36
clpC1 4039664 c.1041G>C synonymous_variant 0.34
clpC1 4039694 c.1011G>C synonymous_variant 0.26
clpC1 4039724 c.981A>G synonymous_variant 0.29
clpC1 4039751 c.954A>G synonymous_variant 0.21
clpC1 4039757 c.948A>G synonymous_variant 0.19
clpC1 4039760 c.945T>C synonymous_variant 0.17
clpC1 4039766 c.939T>C synonymous_variant 0.2
clpC1 4039769 c.936C>G synonymous_variant 0.2
clpC1 4039775 c.930G>C synonymous_variant 0.19
clpC1 4039778 c.927A>G synonymous_variant 0.2
clpC1 4039781 c.924G>C synonymous_variant 0.2
clpC1 4039790 c.915C>G synonymous_variant 0.24
clpC1 4039817 c.888A>C synonymous_variant 0.24
clpC1 4039820 c.885T>G synonymous_variant 0.23
clpC1 4039826 c.879C>G synonymous_variant 0.26
clpC1 4039831 c.874T>C synonymous_variant 0.26
clpC1 4039850 c.855T>C synonymous_variant 0.22
clpC1 4039865 c.840T>C synonymous_variant 0.2
clpC1 4039898 c.807C>G synonymous_variant 0.2
clpC1 4039937 c.768G>C synonymous_variant 0.18
clpC1 4039946 c.759A>C synonymous_variant 0.2
clpC1 4039952 c.753T>C synonymous_variant 0.19
clpC1 4039979 c.726C>G synonymous_variant 0.25
clpC1 4039988 c.717C>G synonymous_variant 0.23
clpC1 4039991 c.714G>C synonymous_variant 0.19
clpC1 4040021 c.684A>C synonymous_variant 0.16
clpC1 4040024 c.681A>G synonymous_variant 0.16
clpC1 4040033 c.672G>C synonymous_variant 0.18
clpC1 4040036 c.669C>G synonymous_variant 0.18
clpC1 4040147 c.558A>G synonymous_variant 0.17
clpC1 4040162 c.543G>C synonymous_variant 0.16
clpC1 4040291 c.414G>C synonymous_variant 0.2
clpC1 4040318 c.387C>G synonymous_variant 0.25
clpC1 4040330 c.375C>G synonymous_variant 0.26
clpC1 4040342 c.363C>G synonymous_variant 0.22
clpC1 4040354 c.351A>G synonymous_variant 0.21
clpC1 4040363 c.342A>T synonymous_variant 0.22
clpC1 4040369 c.336C>G synonymous_variant 0.22
clpC1 4040423 c.282A>G synonymous_variant 0.2
clpC1 4040426 c.279T>C synonymous_variant 0.2
clpC1 4040431 c.274T>C synonymous_variant 0.21
clpC1 4040444 c.261C>T synonymous_variant 0.21
clpC1 4040450 c.255A>G synonymous_variant 0.22
clpC1 4040459 c.246C>G synonymous_variant 0.24
clpC1 4040465 c.240T>C synonymous_variant 0.24
clpC1 4040471 c.234T>C synonymous_variant 0.24
clpC1 4040477 c.228G>C synonymous_variant 0.28
clpC1 4040480 c.225T>G synonymous_variant 0.29
embC 4240726 c.864G>C synonymous_variant 0.18
embC 4240780 c.918T>C synonymous_variant 0.25
embC 4240783 c.921G>C synonymous_variant 0.25
embC 4240789 c.927T>C synonymous_variant 0.25
embC 4240819 c.957A>G synonymous_variant 0.2
embC 4240828 c.966G>A synonymous_variant 0.16
embC 4240831 c.969T>G synonymous_variant 0.15
embC 4241013 p.Met384Thr missense_variant 0.17
embC 4241017 c.1155T>C synonymous_variant 0.21
embC 4241023 c.1161T>G synonymous_variant 0.23
embC 4241032 c.1170G>C synonymous_variant 0.23
embC 4241038 c.1176G>C synonymous_variant 0.26
embC 4241047 c.1185C>G synonymous_variant 0.27
embC 4241050 c.1188T>G synonymous_variant 0.28
embC 4241053 c.1191G>C synonymous_variant 0.3
embC 4241089 c.1227C>G synonymous_variant 0.27
embC 4241095 c.1233C>T synonymous_variant 0.28
embC 4241107 c.1245G>C synonymous_variant 0.24
embC 4241140 c.1278A>G synonymous_variant 0.18
embC 4241146 c.1284C>G synonymous_variant 0.17
embC 4241158 c.1296T>C synonymous_variant 0.17
embC 4241161 c.1299C>G synonymous_variant 0.16
embC 4241173 c.1311C>T synonymous_variant 0.15
embC 4241203 c.1341T>C synonymous_variant 0.15
embC 4241449 c.1587C>G synonymous_variant 0.24
embC 4241453 p.Ile531Val missense_variant 0.21
embC 4241479 c.1617C>G synonymous_variant 0.16
embC 4241480 c.1618T>C synonymous_variant 0.16
embC 4241488 c.1626G>C synonymous_variant 0.16
embA 4242643 c.-590C>T upstream_gene_variant 0.98
embA 4242742 c.-491C>G upstream_gene_variant 0.16
embA 4242748 c.-485A>G upstream_gene_variant 0.16
embA 4242754 c.-479G>C upstream_gene_variant 0.16
embA 4242772 c.-461G>C upstream_gene_variant 0.19
embA 4242892 c.-341G>C upstream_gene_variant 0.16
embA 4245083 c.1851A>C synonymous_variant 0.18
embA 4245089 c.1857G>C synonymous_variant 0.19
embA 4245101 c.1869G>C synonymous_variant 0.21
embA 4245137 c.1905T>C synonymous_variant 0.32
embA 4245146 c.1914G>A synonymous_variant 0.32
embA 4245149 c.1917C>G synonymous_variant 0.33
embA 4245153 p.Ile641Val missense_variant 0.33
embA 4245182 c.1950T>C synonymous_variant 0.35
embA 4245189 c.1957C>T synonymous_variant 0.35
embA 4245198 p.Leu656Ile missense_variant 0.34
embA 4245207 c.1975T>C synonymous_variant 0.29
embA 4245215 c.1983A>C synonymous_variant 0.27
embA 4245222 p.Tyr664Gln missense_variant 0.22
embA 4245248 c.2016G>C synonymous_variant 0.18
embA 4245693 p.Ile821Val missense_variant 0.17
embB 4245701 c.-813G>C upstream_gene_variant 0.19
embB 4245704 c.-810G>C upstream_gene_variant 0.2
embB 4245725 c.-789A>G upstream_gene_variant 0.24
embB 4245726 c.-788T>C upstream_gene_variant 0.25
embB 4245737 c.-777A>C upstream_gene_variant 0.23
embB 4245740 c.-774T>C upstream_gene_variant 0.22
embB 4245851 c.-663G>C upstream_gene_variant 0.15
embB 4246088 c.-426A>G upstream_gene_variant 1.0
embB 4246217 c.-297G>A upstream_gene_variant 0.16
embB 4246235 c.-279G>A upstream_gene_variant 0.18
embA 4246242 p.Gln1004Gly missense_variant 0.19
embB 4246250 c.-264G>C upstream_gene_variant 0.18
embB 4246256 c.-258G>T upstream_gene_variant 0.19
embB 4246259 c.-255G>C upstream_gene_variant 0.19
embA 4246264 p.His1011Arg missense_variant 0.16
embB 4246292 c.-222A>G upstream_gene_variant 0.16
embA 4246305 p.Ser1025Glu missense_variant 0.16
embA 4246308 p.Thr1026Ala missense_variant 0.16
embB 4246316 c.-198T>G upstream_gene_variant 0.17
embB 4246319 c.-195G>C upstream_gene_variant 0.16
embA 4246329 p.Thr1033Ala missense_variant 0.17
embB 4246349 c.-165C>G upstream_gene_variant 0.16
embA 4246359 p.Ala1043Ser missense_variant 0.16
embB 4247437 c.924A>G synonymous_variant 0.15
embB 4247446 c.933C>T synonymous_variant 0.14
embB 4247464 c.951C>G synonymous_variant 0.18
embB 4247470 c.957T>C synonymous_variant 0.18
embB 4247491 c.978G>C synonymous_variant 0.21
embB 4247497 c.984T>C synonymous_variant 0.2
embB 4247512 c.999T>C synonymous_variant 0.17
embB 4247554 c.1041T>C synonymous_variant 0.16
embB 4247761 c.1248T>C synonymous_variant 0.15
embB 4247773 c.1260G>A synonymous_variant 0.16
embB 4247776 c.1263G>T synonymous_variant 0.17
embB 4247797 c.1284C>G synonymous_variant 0.17
embB 4247800 c.1287A>T synonymous_variant 0.16
embB 4247803 c.1290G>C synonymous_variant 0.17
embB 4247815 c.1302C>G synonymous_variant 0.18
embB 4247819 p.Val436Ile missense_variant 0.18
embB 4247830 c.1317A>G synonymous_variant 0.16
embB 4247836 c.1323A>G synonymous_variant 0.15
embB 4247839 c.1326G>C synonymous_variant 0.15
embB 4247866 c.1353G>C synonymous_variant 0.17
embB 4247875 c.1362G>C synonymous_variant 0.19
embB 4247876 c.1363C>T synonymous_variant 0.19
embB 4247881 c.1368G>C synonymous_variant 0.19
embB 4247887 c.1374C>T synonymous_variant 0.2
embB 4247893 c.1380C>T synonymous_variant 0.24
embB 4247899 p.Met462Ile missense_variant 0.3
embB 4247905 c.1392G>C synonymous_variant 0.27
embB 4247909 c.1396T>C synonymous_variant 0.3
embB 4247914 c.1401G>C synonymous_variant 0.31
embB 4247932 c.1419C>G synonymous_variant 0.25
embB 4247940 p.Leu476Trp missense_variant 0.23
embB 4247945 c.1432T>C synonymous_variant 0.24
embB 4247951 p.Ser480Ala missense_variant 0.21
embB 4247956 c.1443G>C synonymous_variant 0.2
embB 4247974 c.1461C>G synonymous_variant 0.19
embB 4248007 c.1494C>G synonymous_variant 0.18
embB 4248011 p.Ser500Arg missense_variant 0.16
embB 4248014 p.Thr501Ala missense_variant 0.16
embB 4248035 p.Val508Ile missense_variant 0.18
embB 4248040 c.1527C>G synonymous_variant 0.16
embB 4248041 p.Ala510Thr missense_variant 0.16
embB 4248044 p.Lys511Glu missense_variant 0.16
embB 4248070 c.1557T>C synonymous_variant 0.2
embB 4248085 c.1572T>C synonymous_variant 0.19
embB 4248097 c.1584C>G synonymous_variant 0.23
embB 4248130 c.1617G>C synonymous_variant 0.26
embB 4248142 c.1629T>C synonymous_variant 0.26
embB 4248143 c.1630T>C synonymous_variant 0.26
embB 4248157 c.1644A>G synonymous_variant 0.27
embB 4248172 c.1659G>C synonymous_variant 0.3
embB 4248199 c.1686A>G synonymous_variant 0.2
embB 4248200 p.Ile563Val missense_variant 0.2
embB 4248205 c.1692C>G synonymous_variant 0.21
embB 4248206 p.Ser565Gly missense_variant 0.21
embB 4248220 c.1707A>C synonymous_variant 0.24
embB 4248304 c.1791G>C synonymous_variant 0.25
embB 4248316 c.1803C>G synonymous_variant 0.24
embB 4248319 c.1806A>G synonymous_variant 0.24
embB 4248343 c.1830G>C synonymous_variant 0.2
embB 4248350 c.1837T>C synonymous_variant 0.17
embB 4248373 c.1860C>G synonymous_variant 0.14
embB 4249444 c.2931T>C synonymous_variant 0.16
embB 4249469 p.Leu986Met missense_variant 0.2
embB 4249486 c.2973T>G synonymous_variant 0.14
aftB 4267635 p.Arg401Gln missense_variant 0.14
aftB 4267647 p.Asp397Gly missense_variant 0.88
aftB 4268164 p.Gln225Glu missense_variant 0.16
aftB 4268169 p.Ala223Gly missense_variant 0.16
aftB 4268994 c.-158T>G upstream_gene_variant 0.17
aftB 4268999 c.-163C>T upstream_gene_variant 0.16
aftB 4269006 c.-170T>C upstream_gene_variant 0.17
aftB 4269012 c.-176G>C upstream_gene_variant 0.2
aftB 4269027 c.-191C>T upstream_gene_variant 0.21
aftB 4269033 c.-197T>C upstream_gene_variant 0.21
aftB 4269036 c.-200C>G upstream_gene_variant 0.21
aftB 4269042 c.-206G>C upstream_gene_variant 0.21
aftB 4269102 c.-266C>T upstream_gene_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0