Rv3245c - c.840G>A


Drug resistance types
84 Sensitive 5 RR-TB 55 HR-TB 21 MDR-TB 6 Pre-XDR-TB 1 XDR-TB 191 Other
lineage Counts
lineage Count
lineage4.9 131
lineage4.9;lineage6.3 7
lineage2.1;lineage4.9;lineage6.3 11
lineage2.2.1 16
La1.7;lineage4.9 8
lineage2.1 6
La3;lineage2.1;lineage4.9 3
lineage2.1;lineage4.9 15
lineage3.1 1
La1.7;lineage3;lineage4.9;lineage7 1
La1.7;lineage4.9;lineage7 3
lineage5.1.4 1
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
lineage5.2 2
lineage4.1.2.1 12
23
La1.7;M.canetti;lineage4.9 4
lineage4.3.4.2.1 2
lineage4.9;lineage7 4
lineage4.1.1.1 3
lineage1;lineage4.9 1
lineage6.2.3 1
La3;lineage2 1
M.canetti;lineage4.9;lineage9 1
lineage6.3.1 1
lineage4.3.3 2
La3;lineage1.1.2 1
La3;lineage2.1;lineage4.9;lineage6.3 4
La3;lineage4.9 7
La1.7;lineage4.3.4.1 1
lineage2.1;lineage4.1.4;lineage4.9 1
lineage3.1.1 1
lineage1.2.2.2 2
lineage4 9
lineage4.3.2 1
M.canetti;lineage4.9 2
La1.8.1 1
La3 2
lineage4.3.4.1 2
M.canetti;lineage2.1;lineage4.9 2
lineage2.2.1.1 2
lineage4.6.2.2 1
lineage2.1;lineage4.9;lineage7 1
lineage4.8 5
lineage4.2.1 1
lineage3 4
lineage4.5 2
La3;lineage2.1;lineage6.3 1
lineage4.1;lineage4.9 2
lineage2.2 1
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La3;M.canetti;lineage2.2.1 1
La3;lineage2.2.1 1
La1.7.X-unk4;lineage4.9 1
La2;lineage2.2 1
lineage4.7 1
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 1
lineage2.1;lineage6.3 2
lineage1.1.2 2
lineage4.6.3;lineage4.9 1
La1.7 1
lineage2.2.1;lineage3 1
M.canetti;lineage1 1
lineage4.9;lineage9 1
lineage4.1.3 2
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 1
lineage1.1.3.2 2
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
M.canetti;lineage2.1;lineage6.3 1
lineage4.4.1.1 2
lineage3;lineage4.9 1
lineage4.1.1.3;lineage4.9 1
La1.6;lineage4 1
lineage6.1.3 1
La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 1
lineage3.1.2.1;lineage4.9 1
La1.2.BCG;La1.8.1 1
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 2
lineage4.6.1.1 1
La3;lineage4.8 1
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 1
lineage4.6.3;lineage4.9;lineage6.3 1
La2;lineage4.9 1
lineage4.1.2.1.1 1
lineage2.2.2 1
lineage2.2.1;lineage6.3 1
La3;lineage4.3.4 1
lineage2.1;lineage4.3.2;lineage4.9 1
lineage1.1.2;lineage4.1.2.1;lineage4.1.3 1
La1.7.1;La1.7.X-unk4;lineage7 1
spoligotype Counts
spoligotype Count
None 363
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR1172234 Other lineage4.9 None
SRR12416840 MDR-TB lineage4.9 None
ERR13265748 Other lineage4.9;lineage6.3 None
ERR702404 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR3797046 HR-TB lineage4.9 None
SRR26937107 MDR-TB lineage2.2.1 None
ERR1034634 HR-TB lineage4.9 None
SRR3675488 Other La1.7;lineage4.9 None
SRR6045706 Sensitive lineage4.9 None
SRR6044819 Sensitive lineage4.9 None
ERR4797054 Pre-XDR-TB lineage2.1 None
SRR5341302 Other La3;lineage2.1;lineage4.9 None
ERR323043 Other lineage2.1;lineage4.9 None
ERR4798493 MDR-TB lineage2.2.1 None
SRR1184346 HR-TB lineage3.1 None
ERR349266 Sensitive lineage4.9 None
ERR5311094 HR-TB lineage4.9 None
ERR373946 Sensitive lineage4.9 None
SRR5341315 Other La1.7;lineage3;lineage4.9;lineage7 None
SRR5341422 HR-TB La1.7;lineage4.9;lineage7 None
SRR3675311 Other lineage4.9 None
SRR7496472 Other lineage4.9 None
SRR1184294 Other lineage4.9 None
ERR2513283 Sensitive lineage5.1.4 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR3283025 MDR-TB La1.7;lineage4.9 None
ERR9119500 MDR-TB lineage5.2 None
ERR9786642 Other lineage4.1.2.1 None
SRR1184381 MDR-TB None
SRR6046196 Other La1.7;M.canetti;lineage4.9 None
ERR4814352 Other lineage2.2.1 None
ERR349264 Sensitive lineage4.9 None
ERR9786601 Other lineage4.1.2.1 None
ERR176549 Other lineage4.3.4.2.1 None
ERR3283055 HR-TB lineage4.9 None
ERR3445502 Sensitive lineage4.9;lineage7 None
SRR1184372 MDR-TB None
SRR6045503 Sensitive lineage4.9 None
SRR3675232 Other lineage4.1.2.1 None
SRR25827507 MDR-TB lineage4.1.1.1 None
ERR4797350 Sensitive lineage1;lineage4.9 None
ERR363500 Sensitive lineage4.9 None
SRR6045242 Other lineage2.1;lineage4.9 None
ERR9787061 Sensitive lineage6.2.3 None
ERR3283040 HR-TB lineage4.9 None
ERR369162 Other lineage4.9 None
ERR3797029 Other lineage4.9 None
SRR6046540 Other lineage2.1;lineage4.9 None
ERR4811030 Sensitive lineage4.9 None
ERR363453 Sensitive lineage4.9 None
SRR20969677 HR-TB La3;lineage2 None
ERR1063856 HR-TB M.canetti;lineage4.9;lineage9 None
SRR1175496 Sensitive lineage4.9 None
ERR9787139 Other lineage6.3.1 None
ERR369163 Sensitive lineage4.9 None
ERR3797080 Sensitive lineage4.9 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR1184298 Pre-XDR-TB lineage4.3.3 None
SRR18003019 Other lineage2.2.1 None
SRR12708384 Sensitive lineage4.9 None
ERR9786627 Other lineage4.1.2.1 None
SRR3416776 Other lineage2.1 None
ERR9117721 HR-TB La3;lineage1.1.2 None
SRR5341432 Sensitive La1.7;lineage4.9;lineage7 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
SRR7496517 Other None
SRR3675455 Sensitive lineage4.9 None
ERR373945 Sensitive lineage4.9 None
ERR3797015 HR-TB lineage4.9 None
ERR4769521 RR-TB lineage4.9 None
SRR6046133 HR-TB lineage4.9 None
ERR1063883 HR-TB lineage4.9 None
SRR6789626 Other None
SRR29016901 Other La3;lineage4.9 None
SRR29096879 Sensitive lineage4.9 None
SRR6046897 Sensitive lineage4.9 None
SRR6046783 Other La1.7;M.canetti;lineage4.9 None
ERR4816999 Other None
SRR6045219 HR-TB lineage4.9 None
ERR11465802 Other La1.7;lineage4.3.4.1 None
ERR3797036 HR-TB lineage2.1;lineage4.1.4;lineage4.9 None
SRR3675248 Other lineage4.9 None
SRR1196474 Other lineage3.1.1 None
SRR12708411 HR-TB lineage1.2.2.2 None
SRR6458423 HR-TB lineage2.2.1 None
ERR400336 Sensitive lineage4.9 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
ERR2446382 Other lineage4 None
SRR3675524 Other lineage4.9;lineage6.3 None
ERR926163 Other lineage4.9 None
ERR9117805 Other lineage4.3.2 None
SRR6045399 Other M.canetti;lineage4.9 None
ERR363509 Sensitive lineage4.9 None
ERR3797073 Other La1.8.1 None
ERR4816466 HR-TB lineage4.9 None
SRR3675387 Other lineage4.9 None
SRR1172728 RR-TB La3 None
ERR971389 Sensitive lineage4.9 None
SRR13583478 HR-TB lineage4.3.4.1 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR176643 Other La3;lineage4.9 None
SRR3675229 Sensitive lineage4.9 None
ERR369160 Sensitive lineage4.9 None
SRR7496509 Other None
SRR3675456 RR-TB lineage4.9;lineage7 None
ERR373947 Other lineage4.9 None
SRR1184024 RR-TB lineage2.2.1.1 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR9786645 Other lineage4.6.2.2 None
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
SRR6046225 Other lineage4.9;lineage6.3 None
SRR1180147 Other lineage2.2.1.1 None
SRR6045887 Other La1.7;M.canetti;lineage4.9 None
SRR12708416 Sensitive None
SRR6046485 Other lineage4.9 None
ERR3804155 Other lineage4.1.2.1 None
SRR7131023 Other lineage4.1.2.1 None
ERR363456 Sensitive lineage4.9 None
ERR2514692 Other None
ERR9787197 Other None
ERR4817060 Other None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR10808730 Other lineage4.9 None
ERR2517475 Other lineage4 None
ERR4797313 Sensitive lineage2.2.1 None
ERR9786671 Other None
SRR12142341 HR-TB lineage2.1 None
SRR3675547 Sensitive lineage4.9 None
ERR212034 HR-TB La1.7;lineage4.9 None
ERR349330 Sensitive lineage4.9 None
ERR363446 Sensitive lineage4.9 None
ERR926156 Sensitive lineage4.9 None
ERR9786421 Other lineage4.1.2.1 None
SRR3675539 HR-TB lineage4.9;lineage7 None
SRR29096717 Sensitive lineage4.9 None
ERR4819781 Other lineage2.2.1 None
SRR6045555 Other lineage4.9 None
SRR1173633 Other lineage4.9 None
SRR3675555 HR-TB lineage2.1;lineage4.9;lineage7 None
SRR3675572 Other None
SRR3675477 Sensitive lineage4.9 None
SRR5341333 Other lineage2.1;lineage4.9 None
SRR29096203 Sensitive lineage4.9 None
ERR3275201 Sensitive lineage4.8 nl
ERR13265528 Other lineage4.9;lineage6.3 None
ERR6866807 Other lineage4.9 None
SRR1196566 Other lineage4.9 None
SRR3675505 Other La1.7;M.canetti;lineage4.9 None
SRR3675465 Other lineage4.9;lineage6.3 None
ERR2512770 Sensitive lineage4.2.1 None
SRR23961558 Other lineage2.1;lineage4.9;lineage6.3 None
SRR6044855 Sensitive lineage4.9 None
ERR3283036 Other lineage2.1;lineage4.9 None
ERR9786694 Other lineage4.1.2.1 None
SRR1172951 Other lineage4.9 None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR9786569 Other lineage4.8 None
ERR400529 Other lineage3 None
ERR752229 Other lineage4.5 None
SRR1196583 Other lineage4.9 None
SRR3675508 Other lineage2.1;lineage4.9;lineage6.3 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
SRR5341373 Other lineage4.9 None
SRR3675275 Other lineage4.9 None
ERR4798431 Sensitive lineage4.1;lineage4.9 None
ERR4810624 MDR-TB lineage2.2 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR18213713 HR-TB None
ERR2514327 HR-TB lineage4.8 None
SRR28119717 Other lineage4.9;lineage6.3 None
SRR12708409 HR-TB lineage4.3.3 None
ERR387051 Other lineage4.9 None
ERR176568 HR-TB La3;lineage2.1;lineage4.9 None
ERR3283019 Other lineage2.1;lineage4.9 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
SRR1710057 Other lineage2.1 None
ERR3275450 Other lineage4 None
SRR29055629 MDR-TB La3;lineage2.2.1 None
ERR369158 Other lineage4.9 None
SRR3675522 Other lineage4.9 None
SRR3675214 Other lineage4.9 None
SRR1173629 Other lineage2.1;lineage4.9 None
SRR3675520 Other La1.7.X-unk4;lineage4.9 None
ERR4817896 HR-TB lineage2.2.1 None
ERR1063839 MDR-TB La2;lineage2.2 None
SRR26399973 Other La3;lineage4.9 None
ERR4819932 Other lineage4.7 None
ERR2026695 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 None
ERR9119669 HR-TB lineage4.9 None
SRR1173355 Other lineage4.9 None
SRR19303884 Other lineage2.1;lineage6.3 None
ERR9786682 Other lineage4.1.2.1 None
SRR3675501 Other La1.7;lineage4.9 None
ERR4188247 HR-TB lineage4.9 None
SRR1169194 Other lineage4.9 None
SRR6046863 Sensitive lineage1.1.2 None
SRR6046577 Other lineage4.6.3;lineage4.9 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
SRR5341332 Pre-XDR-TB lineage3 None
SRR3675231 MDR-TB lineage4.9;lineage7 None
SRR6044790 Other lineage2.1;lineage4.9 None
ERR363506 Sensitive lineage4.9 None
ERR926162 Sensitive lineage4.9 None
ERR363479 Sensitive lineage4.9 None
ERR11466146 Other lineage4.3.4.2.1 None
SRR3675467 Other lineage2.1;lineage4.9;lineage6.3 None
ERR4830353 Other La1.7 None
SRR1184312 Other lineage2.2.1 None
SRR5341345 Sensitive lineage4.9 None
SRR6045526 Other lineage4.9 None
ERR926160 Sensitive lineage4.9 None
ERR1035157 Other lineage4.9 None
SRR25827497 XDR-TB lineage2.2.1;lineage3 None
ERR3283030 HR-TB lineage4.9 None
SRR6046066 Other lineage4.9 None
SRR3675216 Other lineage2.1;lineage4.9 None
ERR363449 Sensitive lineage4.9 None
ERR363474 Sensitive lineage4.9 None
ERR4178226 Sensitive lineage4 None
ERR161037 Other lineage4.9 None
ERR11465801 Other lineage4.3.4.1 None
SRR15014655 Other M.canetti;lineage1 None
ERR400326 Other lineage4.9 None
SRR6046245 Other lineage4.9 None
SRR6046720 HR-TB lineage4.9;lineage9 None
ERR4820854 Other lineage4.1.2.1 None
SRR20970043 MDR-TB lineage2.2.1 None
ERR176793 Other lineage4.1.1.1 None
SRR7535086 Other None
ERR363499 Sensitive lineage4.9 None
SRR6046564 Sensitive lineage4.9 None
SRR1165699 Other lineage4.9 None
ERR3804169 HR-TB lineage4.1.3 None
SRR12708372 Sensitive lineage4.9 None
ERR4872094 MDR-TB lineage5.2 None
ERR4800341 Other lineage3 None
SRR3675541 Sensitive lineage4.9 None
ERR926154 Sensitive lineage4.9 None
ERR702406 Other lineage2.1 None
ERR363502 Other lineage4.9 None
SRR5341437 Sensitive lineage4.9 None
ERR9117709 Other None
ERR2026696 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 None
ERR9786611 HR-TB lineage4.1.3 None
SRR3675549 Other lineage4.9 None
ERR5336148 Other lineage2.1;lineage6.3 None
SRR1173400 Other lineage4.9 None
SRR3675581 Other lineage2.1;lineage4.9 None
ERR736867 Other lineage2.1;lineage4.9 None
ERR176751 Other lineage4.9 None
SRR28868888 Other lineage1.1.3.2 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
ERR4816559 MDR-TB lineage4.4.1.1 None
SRR1183144 Other lineage2.2.1 None
SRR22251329 Other lineage2.1 None
SRR5341396 Other lineage3;lineage4.9 None
ERR502912 Other lineage2.2.1 None
ERR349296 Sensitive lineage4.9 None
ERR3797070 Other lineage4.9 None
ERR176560 HR-TB La1.7;lineage4.9 None
SRR3675221 Other lineage4.9 None
SRR25827682 Other None
SRR28351339 MDR-TB lineage4 None
SRR1172857 Other None
ERR212033 Other lineage4.9 None
SRR6789621 Other lineage4.9 None
ERR234659 Other None
ERR369159 Sensitive lineage4.9 None
SRR1175507 Sensitive lineage4.1.1.3;lineage4.9 None
ERR926165 Sensitive lineage4.9 None
ERR9786604 Other None
SRR1165667 Other lineage4.9;lineage6.3 None
SRR1167384 Other La3;lineage4.9 None
SRR6046382 Sensitive lineage2.2.1 None
ERR4815752 Other lineage4.9 None
SRR3675457 Other lineage4.9 None
SRR28351554 Sensitive La1.6;lineage4 None
SRR6045380 Other lineage2.1;lineage4.9 None
ERR926155 Sensitive lineage4.9 None
ERR4407463 HR-TB None
ERR9787165 Other lineage6.1.3 None
ERR1034652 Other La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 None
ERR926157 Sensitive lineage4.9 None
ERR2514390 Sensitive lineage3.1.2.1;lineage4.9 None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1173778 Other lineage4.9 None
ERR4818021 Other La1.2.BCG;La1.8.1 None
ERR181744 HR-TB La3;lineage4.9 None
SRR3675385 Other La1.7;lineage4.9 None
ERR4811031 Sensitive lineage4.5 None
ERR2026698 HR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
ERR6358755 Other lineage4.6.1.1 None
ERR4817893 Other La3;lineage4.8 None
SRR1175074 Other None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
ERR363498 Sensitive lineage4.9 None
SRR1184388 Other lineage2.1;lineage4.9 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
ERR400320 Sensitive lineage4.9 None
ERR4817735 Other lineage4.8 None
SRR5341313 Sensitive La1.7;lineage4.9;lineage7 None
SRR25827687 MDR-TB lineage1.1.2 None
SRR3675265 Other lineage4 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3797069 Other lineage4.9 None
SRR3675495 Other lineage2.1;lineage4.9 None
ERR4178309 Other lineage4.1.2.1 None
ERR2026697 HR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
ERR363490 Sensitive lineage4.9 None
ERR736863 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR1165628 Other La3;lineage4.9 None
ERR736848 Other lineage4.9 None
ERR4799547 HR-TB lineage2.2.1 None
SRR14801759 HR-TB La1.7;lineage4.9 None
ERR349300 Sensitive lineage4.9 None
ERR363421 Sensitive lineage4.9 None
SRR3675473 Sensitive lineage4.9 None
SRR3675574 Other lineage4.6.3;lineage4.9;lineage6.3 None
SRR5341293 Sensitive lineage4.9 None
ERR1063857 MDR-TB La2;lineage4.9 None
ERR4972483 Pre-XDR-TB lineage4.1.2.1.1 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
SRR3675267 Other La1.7;lineage4.9 None
SRR15368973 Other lineage4.9 None
ERR4815604 Other None
ERR736839 HR-TB M.canetti;lineage4.9 None
SRR18910194 HR-TB lineage2.2.2 None
ERR2027263 Other lineage4 None
SRR12708374 Sensitive lineage4.1;lineage4.9 None
SRR12708398 Sensitive lineage4.4.1.1 None
SRR1169306 Other La3;lineage4.9 None
ERR400345 Other lineage4.9 None
SRR28119811 Other lineage2.2.1;lineage6.3 None
ERR6865502 Sensitive lineage4 None
ERR4799478 Pre-XDR-TB lineage2.2.1 None
SRR11662694 Other lineage4.9 None
ERR9786617 Other lineage4.1.1.1 None
ERR4797588 MDR-TB lineage3 None
ERR161039 HR-TB La3;lineage4.3.4 None
ERR6865513 Other lineage4.1.2.1 None
ERR926161 Sensitive lineage4.9 None
SRR1196546 Other lineage4.9 None
SRR1184380 Other lineage2.1;lineage4.9 None
SRR6045327 Other lineage2.1;lineage4.3.2;lineage4.9 None
SRR5341323 Sensitive lineage4.9 None
SRR6045371 Other lineage4.9 None
ERR7821123 Other lineage1.1.3.2 None
SRR3675236 Other None
SRR3675260 Sensitive lineage4.9 None
ERR3283044 Other lineage4 None
ERR926159 Sensitive lineage4.9 None
ERR4797201 Other lineage1.2.2.2 None
ERR2446570 Sensitive lineage4.8 nl
ERR4812155 Other lineage4.9 None
ERR4814683 Sensitive lineage1.1.2;lineage4.1.2.1;lineage4.1.3 None
ERR363445 Other lineage4.9 None
ERR926164 Other lineage4.9 None
SRR6046594 Sensitive lineage4.9 None
SRR3675247 Other lineage4.9 None
SRR1172817 Other La3 None
SRR1180172 Other lineage2.2.1 None
ERR3445501 HR-TB La1.7.1;La1.7.X-unk4;lineage7 None