TB-Profiler result

Run: ERR3797073
Summary

Run ID: ERR3797073

Sample name:

Date: 01-04-2023 03:04:40

Number of reads: 695829

Percentage reads mapped: 41.57

Strain: La1.8.1

Drug-resistance: HR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
La1 M.bovis None None 0.96
La1.8 M.bovis None None 0.99
La1.8.1 M.bovis None None 0.95
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
katG 2154976 p.Ala379Val missense_variant 0.14 isoniazid
pncA 2289073 p.His57Asp missense_variant 1.0 pyrazinamide
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5752 c.513G>A synonymous_variant 1.0
gyrB 6124 c.885C>G synonymous_variant 0.17
gyrB 6172 c.933C>T synonymous_variant 0.15
gyrB 6242 p.Arg335Lys missense_variant 0.18
gyrB 6250 c.1011A>G synonymous_variant 0.18
gyrB 6259 p.Asp340Glu missense_variant 0.17
gyrB 6268 c.1029C>G synonymous_variant 0.15
gyrA 6406 c.-896C>T upstream_gene_variant 1.0
gyrB 6446 p.Ala403Ser missense_variant 1.0
gyrA 6550 c.-752A>G upstream_gene_variant 0.24
gyrA 6571 c.-731T>C upstream_gene_variant 0.25
gyrA 6580 c.-722C>G upstream_gene_variant 0.23
gyrB 6590 p.Arg451Ser missense_variant 0.27
gyrA 6598 c.-704C>G upstream_gene_variant 0.19
gyrA 6610 c.-692C>G upstream_gene_variant 0.39
gyrA 6613 c.-689A>G upstream_gene_variant 0.37
gyrA 6616 c.-686A>G upstream_gene_variant 0.37
gyrA 6622 c.-680C>T upstream_gene_variant 0.16
gyrA 6628 c.-674C>G upstream_gene_variant 0.18
gyrA 6631 c.-671C>T upstream_gene_variant 0.18
gyrA 6634 c.-668T>C upstream_gene_variant 0.22
gyrA 6637 c.-665T>G upstream_gene_variant 0.39
gyrA 6640 c.-662A>C upstream_gene_variant 0.35
gyrA 6643 c.-659A>G upstream_gene_variant 0.37
gyrA 6646 c.-656C>T upstream_gene_variant 0.17
gyrA 6649 c.-653T>C upstream_gene_variant 0.26
gyrA 6652 c.-650C>G upstream_gene_variant 0.25
gyrA 6655 c.-647T>C upstream_gene_variant 0.26
gyrA 6673 c.-629A>C upstream_gene_variant 0.35
gyrA 6676 c.-626T>G upstream_gene_variant 0.28
gyrA 6700 c.-602T>C upstream_gene_variant 0.2
gyrA 6703 c.-599G>C upstream_gene_variant 0.32
gyrA 6709 c.-593A>G upstream_gene_variant 0.32
gyrA 6712 c.-590G>C upstream_gene_variant 0.29
gyrA 6730 c.-572A>G upstream_gene_variant 0.33
gyrA 6742 c.-560A>G upstream_gene_variant 0.24
gyrA 6745 c.-557T>G upstream_gene_variant 0.21
gyrA 6760 c.-542G>C upstream_gene_variant 0.29
gyrA 6775 c.-527G>C upstream_gene_variant 0.18
gyrA 6793 c.-509T>C upstream_gene_variant 0.19
gyrA 7066 c.-236G>C upstream_gene_variant 0.18
gyrA 7078 c.-224A>C upstream_gene_variant 0.26
gyrA 7084 c.-218A>G upstream_gene_variant 0.27
gyrA 7093 c.-209T>C upstream_gene_variant 0.38
gyrA 7114 c.-188C>G upstream_gene_variant 0.3
gyrA 7123 c.-179C>G upstream_gene_variant 0.3
gyrA 7129 c.-173T>G upstream_gene_variant 0.42
gyrA 7132 c.-170T>G upstream_gene_variant 0.45
gyrA 7136 c.-166T>C upstream_gene_variant 0.35
gyrA 7141 c.-161T>A upstream_gene_variant 0.41
gyrA 7144 c.-158A>G upstream_gene_variant 0.47
gyrA 7147 c.-155G>C upstream_gene_variant 0.37
gyrA 7150 c.-152G>C upstream_gene_variant 0.35
gyrA 7153 c.-149G>C upstream_gene_variant 0.45
gyrA 7168 c.-134C>G upstream_gene_variant 0.4
gyrA 7177 c.-125G>A upstream_gene_variant 0.4
gyrA 7178 c.-124T>C upstream_gene_variant 0.4
gyrA 7192 c.-110G>C upstream_gene_variant 0.33
gyrA 7201 c.-101G>A upstream_gene_variant 0.28
gyrB 7210 p.Asp657Glu missense_variant 0.26
gyrA 7216 c.-86G>C upstream_gene_variant 0.25
gyrA 7219 c.-83C>T upstream_gene_variant 0.16
gyrA 7225 c.-77T>C upstream_gene_variant 0.19
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7442 c.141G>T synonymous_variant 0.2
gyrA 7457 c.156T>C synonymous_variant 0.27
gyrA 7463 c.162G>C synonymous_variant 0.2
gyrA 7469 c.168C>G synonymous_variant 0.22
gyrA 7472 c.171T>C synonymous_variant 0.22
gyrA 7475 c.174A>G synonymous_variant 0.28
gyrA 7480 p.Phe60Tyr missense_variant 0.35
gyrA 7484 c.183T>C synonymous_variant 0.33
gyrA 7487 c.186C>G synonymous_variant 0.21
gyrA 7496 c.195C>T synonymous_variant 0.18
gyrA 7502 c.201C>T synonymous_variant 0.21
gyrA 7517 c.216G>A synonymous_variant 0.17
gyrA 7520 c.219G>C synonymous_variant 0.18
gyrA 7523 c.222C>G synonymous_variant 0.2
gyrA 7526 c.225G>C synonymous_variant 0.2
gyrA 7547 c.246C>T synonymous_variant 0.18
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 7592 c.291G>C synonymous_variant 0.18
gyrA 7607 c.306C>G synonymous_variant 0.28
gyrA 7614 c.313C>T synonymous_variant 0.19
gyrA 7658 c.357A>G synonymous_variant 0.27
gyrA 7661 c.360C>T synonymous_variant 0.23
gyrA 7664 c.363T>C synonymous_variant 0.27
gyrA 7667 c.366C>T synonymous_variant 0.21
gyrA 7670 c.369A>G synonymous_variant 0.25
gyrA 7673 c.372G>A synonymous_variant 0.15
gyrA 7679 c.378G>C synonymous_variant 0.22
gyrA 7683 c.382_384delAGGinsCGT synonymous_variant 0.26
gyrA 7697 c.396C>G synonymous_variant 0.23
gyrA 7700 c.399G>A synonymous_variant 0.15
gyrA 7706 c.405C>T synonymous_variant 0.26
gyrA 7725 c.424C>T synonymous_variant 0.16
gyrA 7728 c.427_429delAGGinsCGT synonymous_variant 0.25
gyrA 8048 c.747C>A synonymous_variant 1.0
gyrA 8285 c.984C>T synonymous_variant 1.0
gyrA 8453 c.1152A>C synonymous_variant 0.16
gyrA 8462 c.1161A>G synonymous_variant 0.2
gyrA 8486 c.1185T>C synonymous_variant 0.2
gyrA 8489 c.1188A>G synonymous_variant 0.2
gyrA 8504 c.1203G>C synonymous_variant 0.21
gyrA 8516 c.1215T>C synonymous_variant 0.22
gyrA 8519 c.1218A>G synonymous_variant 0.2
gyrA 8520 c.1219C>T synonymous_variant 0.24
gyrA 9143 c.1842T>C synonymous_variant 1.0
gyrA 9179 c.1878C>G synonymous_variant 0.15
gyrA 9182 c.1881T>C synonymous_variant 0.15
gyrA 9191 c.1890G>T synonymous_variant 0.16
gyrA 9217 p.Asp639Ala missense_variant 0.8
gyrA 9230 c.1929T>C synonymous_variant 0.25
gyrA 9236 c.1935G>C synonymous_variant 0.19
gyrA 9242 c.1941A>C synonymous_variant 0.28
gyrA 9248 c.1947G>C synonymous_variant 0.26
gyrA 9252 p.Val651Ile missense_variant 0.25
gyrA 9263 c.1962C>G synonymous_variant 0.24
gyrA 9266 p.Asp655Glu missense_variant 0.24
gyrA 9267 p.Asn656Gly missense_variant 0.35
gyrA 9275 c.1974G>A synonymous_variant 0.33
gyrA 9296 c.1995T>C synonymous_variant 0.44
gyrA 9302 c.2001C>A synonymous_variant 0.29
gyrA 9304 p.Gly668Glu missense_variant 1.0
gyrA 9317 c.2016G>C synonymous_variant 0.27
gyrA 9323 c.2022C>G synonymous_variant 0.4
gyrA 9324 p.Ser675Thr missense_variant 0.13
gyrA 9335 c.2034G>C synonymous_variant 0.33
gyrA 9341 c.2040C>G synonymous_variant 0.28
gyrA 9345 c.2044_2046delAGGinsCGC synonymous_variant 0.37
gyrA 9356 c.2055G>C synonymous_variant 0.15
gyrA 9377 c.2076A>G synonymous_variant 0.21
gyrA 9383 c.2082T>C synonymous_variant 0.21
fgd1 491144 p.Ala121Asp missense_variant 0.18
fgd1 491181 c.399T>C synonymous_variant 0.18
fgd1 491191 p.Gly137Arg missense_variant 0.15
fgd1 491526 c.744T>C synonymous_variant 0.2
fgd1 491547 c.765A>C synonymous_variant 0.2
fgd1 491550 c.768T>C synonymous_variant 0.2
fgd1 491574 c.792C>T synonymous_variant 0.17
fgd1 491595 c.813C>T synonymous_variant 0.22
fgd1 491601 c.819T>C synonymous_variant 0.26
fgd1 491605 c.823C>T synonymous_variant 0.22
fgd1 491610 c.828A>C synonymous_variant 0.23
fgd1 491616 c.834A>G synonymous_variant 0.24
fgd1 491640 c.858G>C synonymous_variant 0.22
fgd1 491658 c.876A>G synonymous_variant 0.22
fgd1 491661 c.879C>G synonymous_variant 0.19
fgd1 491667 c.885A>G synonymous_variant 0.21
fgd1 491742 c.960T>C synonymous_variant 1.0
mshA 575734 c.387T>G synonymous_variant 0.18
mshA 575744 p.Ala133Thr missense_variant 0.17
mshA 575803 c.456C>T synonymous_variant 0.21
mshA 575821 c.474G>C synonymous_variant 0.21
mshA 575824 c.477T>C synonymous_variant 0.19
mshA 575833 c.486C>G synonymous_variant 0.18
mshA 575857 c.510G>C synonymous_variant 0.22
mshA 575864 c.517T>C synonymous_variant 0.17
ccsA 620631 c.741T>C synonymous_variant 0.17
ccsA 620688 c.798G>C synonymous_variant 0.36
ccsA 620694 c.804C>G synonymous_variant 0.38
ccsA 620698 p.Val270Ile missense_variant 0.38
ccsA 620709 c.819G>C synonymous_variant 0.38
ccsA 620733 c.843G>C synonymous_variant 0.33
ccsA 620736 c.846G>C synonymous_variant 0.33
ccsA 620739 c.849A>G synonymous_variant 0.3
ccsA 620742 c.852G>C synonymous_variant 0.29
ccsA 620748 c.858T>G synonymous_variant 0.29
ccsA 620754 c.864G>T synonymous_variant 0.29
ccsA 620778 c.888T>C synonymous_variant 0.26
ccsA 620783 p.Ala298Val missense_variant 0.26
ccsA 620787 c.897C>T synonymous_variant 0.26
ccsA 620793 c.903G>C synonymous_variant 0.25
ccsA 620796 c.906C>G synonymous_variant 0.26
ccsA 620808 c.918T>C synonymous_variant 0.24
ccsA 620818 p.Val310Ile missense_variant 0.16
rpoB 760101 c.295T>C synonymous_variant 0.27
rpoB 760104 p.Ser100Thr missense_variant 0.17
rpoB 760112 c.306T>C synonymous_variant 0.21
rpoB 760139 c.333A>G synonymous_variant 0.2
rpoB 760142 c.336C>G synonymous_variant 0.24
rpoB 760184 c.378A>G synonymous_variant 0.17
rpoB 760274 c.468G>A synonymous_variant 0.24
rpoB 760283 c.477G>C synonymous_variant 0.26
rpoB 760298 c.492G>C synonymous_variant 0.22
rpoB 760307 c.501T>C synonymous_variant 0.26
rpoB 760310 c.504G>C synonymous_variant 0.22
rpoB 760316 c.510C>G synonymous_variant 0.23
rpoB 760317 c.511_513delAGCinsTCG synonymous_variant 0.2
rpoB 760328 c.522G>C synonymous_variant 0.32
rpoB 760331 c.525G>T synonymous_variant 0.32
rpoB 760337 c.531C>T synonymous_variant 0.29
rpoB 760340 c.534G>C synonymous_variant 0.38
rpoB 760361 c.555T>C synonymous_variant 0.43
rpoB 760376 p.Asp190Glu missense_variant 0.43
rpoB 760407 p.Ser201Gly missense_variant 0.24
rpoB 760415 c.609C>T synonymous_variant 0.18
rpoB 760424 c.618C>G synonymous_variant 0.24
rpoB 760430 c.624T>C synonymous_variant 0.18
rpoB 760457 c.651C>T synonymous_variant 0.24
rpoB 760463 c.657C>T synonymous_variant 0.24
rpoB 760475 c.669A>G synonymous_variant 0.22
rpoB 760481 c.675G>C synonymous_variant 0.2
rpoB 760484 c.678A>G synonymous_variant 0.26
rpoB 760522 p.Ser239Asn missense_variant 0.23
rpoB 760532 c.726T>C synonymous_variant 0.24
rpoB 760535 c.729C>G synonymous_variant 0.21
rpoB 760541 c.735G>C synonymous_variant 0.2
rpoB 760547 c.741G>C synonymous_variant 0.23
rpoB 760591 p.Val262Ala missense_variant 0.29
rpoB 760611 c.805T>C synonymous_variant 0.29
rpoB 760634 c.828T>A synonymous_variant 0.16
rpoB 760655 c.849A>G synonymous_variant 0.22
rpoB 760670 c.864G>C synonymous_variant 0.18
rpoB 760679 c.873A>G synonymous_variant 0.2
rpoB 761027 c.1221A>G synonymous_variant 0.19
rpoB 761036 c.1230G>C synonymous_variant 0.24
rpoB 761037 c.1231T>C synonymous_variant 0.21
rpoB 761051 c.1245G>T synonymous_variant 0.18
rpoB 761054 c.1248G>C synonymous_variant 0.19
rpoB 761057 c.1251G>C synonymous_variant 0.23
rpoB 761060 c.1254C>G synonymous_variant 0.22
rpoB 761063 c.1257C>G synonymous_variant 0.21
rpoB 761097 c.1291_1293delAGCinsTCG synonymous_variant 0.3
rpoB 761102 c.1296A>G synonymous_variant 0.39
rpoB 761132 c.1326G>T synonymous_variant 0.41
rpoB 761133 c.1327T>C synonymous_variant 0.53
rpoB 761147 c.1341C>T synonymous_variant 0.34
rpoB 761150 c.1344A>T synonymous_variant 0.37
rpoB 761153 c.1347G>T synonymous_variant 0.34
rpoB 761165 c.1359G>C synonymous_variant 0.45
rpoB 761180 c.1374A>C synonymous_variant 0.4
rpoB 761189 c.1383T>C synonymous_variant 0.3
rpoB 761195 c.1389G>C synonymous_variant 0.43
rpoB 761198 c.1392G>C synonymous_variant 0.29
rpoB 761219 c.1413G>C synonymous_variant 0.26
rpoB 761220 c.1414_1416delTCGinsAGC synonymous_variant 0.26
rpoB 761234 c.1428G>C synonymous_variant 0.29
rpoB 761249 c.1443A>G synonymous_variant 0.48
rpoB 761255 c.1449T>G synonymous_variant 0.19
rpoB 761261 c.1455G>T synonymous_variant 0.27
rpoB 761264 c.1458C>G synonymous_variant 0.19
rpoB 761282 c.1476C>T synonymous_variant 0.19
rpoB 761300 c.1494G>C synonymous_variant 0.19
rpoB 761306 c.1500C>G synonymous_variant 0.28
rpoB 761318 c.1512G>C synonymous_variant 0.35
rpoB 761327 c.1521A>G synonymous_variant 0.31
rpoB 761345 c.1539G>C synonymous_variant 0.21
rpoB 761354 c.1548C>T synonymous_variant 0.21
rpoB 761360 c.1554T>C synonymous_variant 0.19
rpoB 761362 p.Ser519Thr missense_variant 0.23
rpoB 761367 p.Glu521Gln missense_variant 0.16
rpoB 761374 p.Val523Asp missense_variant 0.21
rpoB 761537 c.1731C>G synonymous_variant 0.23
rpoB 761561 c.1755C>G synonymous_variant 0.23
rpoB 761573 c.1767C>G synonymous_variant 0.24
rpoB 761579 c.1773G>C synonymous_variant 0.24
rpoB 761606 c.1800C>G synonymous_variant 0.28
rpoB 761612 c.1806G>T synonymous_variant 0.26
rpoB 761615 c.1809A>C synonymous_variant 0.3
rpoB 761636 c.1830G>T synonymous_variant 0.28
rpoB 761645 c.1839C>G synonymous_variant 0.23
rpoB 761657 c.1851C>A synonymous_variant 0.22
rpoB 761690 c.1884G>C synonymous_variant 0.21
rpoB 761724 p.Glu640Lys missense_variant 0.15
rpoB 761728 p.Ser641Thr missense_variant 0.16
rpoB 761732 c.1926C>T synonymous_variant 0.16
rpoB 761747 c.1941G>C synonymous_variant 0.17
rpoB 761813 c.2007T>C synonymous_variant 0.25
rpoB 761834 c.2028T>G synonymous_variant 0.15
rpoB 761852 c.2046C>G synonymous_variant 0.16
rpoB 761864 c.2058G>C synonymous_variant 0.21
rpoB 761867 c.2061C>G synonymous_variant 0.14
rpoB 761885 c.2079T>C synonymous_variant 0.17
rpoB 761909 c.2103T>C synonymous_variant 0.18
rpoB 761912 c.2106T>C synonymous_variant 0.2
rpoB 761915 p.Asp703Glu missense_variant 0.2
rpoB 761916 p.Asp704Asn missense_variant 0.24
rpoB 761921 c.2115C>T synonymous_variant 0.24
rpoB 761948 c.2142G>C synonymous_variant 0.23
rpoB 761954 c.2148C>G synonymous_variant 0.3
rpoB 761969 c.2163G>A synonymous_variant 0.29
rpoB 761999 c.2193G>C synonymous_variant 0.35
rpoB 762002 c.2196C>G synonymous_variant 0.37
rpoB 762053 c.2247T>C synonymous_variant 0.58
rpoB 762065 c.2259T>C synonymous_variant 0.58
rpoB 762083 c.2277T>C synonymous_variant 0.5
rpoB 762086 c.2280G>C synonymous_variant 0.48
rpoB 762101 c.2295C>G synonymous_variant 0.42
rpoB 762114 p.Ile770Val missense_variant 0.43
rpoB 762134 c.2328C>T synonymous_variant 0.41
rpoB 762140 c.2334G>C synonymous_variant 0.35
rpoB 762143 c.2337T>C synonymous_variant 0.37
rpoB 762149 c.2343G>C synonymous_variant 0.37
rpoB 762158 c.2352G>C synonymous_variant 0.33
rpoB 762167 c.2361T>C synonymous_variant 0.33
rpoB 762176 c.2370T>C synonymous_variant 0.36
rpoB 762185 c.2379G>T synonymous_variant 0.38
rpoB 762218 c.2412T>C synonymous_variant 0.26
rpoB 762233 c.2427G>C synonymous_variant 0.29
rpoB 762251 c.2445G>C synonymous_variant 0.24
rpoB 762254 c.2448T>C synonymous_variant 0.3
rpoB 762257 c.2451C>G synonymous_variant 0.3
rpoB 762275 c.2469C>G synonymous_variant 0.23
rpoB 762284 c.2478G>C synonymous_variant 0.38
rpoB 762293 c.2487T>G synonymous_variant 0.31
rpoB 762305 c.2499G>C synonymous_variant 0.27
rpoB 762314 c.2508C>T synonymous_variant 0.25
rpoB 762317 c.2511A>G synonymous_variant 0.32
rpoB 762320 c.2514C>G synonymous_variant 0.24
rpoB 762329 c.2523G>C synonymous_variant 0.26
rpoB 762338 c.2532T>C synonymous_variant 0.24
rpoB 762341 c.2535G>C synonymous_variant 0.19
rpoB 762347 c.2541T>C synonymous_variant 0.25
rpoB 762362 p.Glu852Asp missense_variant 0.22
rpoB 762369 c.2563T>C synonymous_variant 0.18
rpoC 762443 c.-927G>C upstream_gene_variant 0.17
rpoC 762470 c.-900G>C upstream_gene_variant 0.19
rpoC 762509 c.-861T>G upstream_gene_variant 0.18
rpoB 762510 p.Ala902Pro missense_variant 0.18
rpoC 762533 c.-837T>C upstream_gene_variant 0.22
rpoC 762536 c.-834T>C upstream_gene_variant 0.23
rpoC 762537 c.-833T>C upstream_gene_variant 0.24
rpoC 762551 c.-819C>T upstream_gene_variant 0.25
rpoC 762581 c.-789T>C upstream_gene_variant 0.16
rpoC 762899 c.-471G>C upstream_gene_variant 0.16
rpoC 762917 c.-453C>G upstream_gene_variant 0.15
rpoC 762920 c.-450C>T upstream_gene_variant 0.16
rpoC 762929 c.-441G>T upstream_gene_variant 0.16
rpoC 763028 c.-342T>C upstream_gene_variant 0.24
rpoC 763031 c.-339T>C upstream_gene_variant 0.81
rpoC 763040 c.-330C>G upstream_gene_variant 0.23
rpoC 763070 c.-300T>C upstream_gene_variant 0.29
rpoC 763076 c.-294C>G upstream_gene_variant 0.2
rpoC 763079 c.-291C>G upstream_gene_variant 0.17
rpoC 763115 c.-255T>C upstream_gene_variant 0.29
rpoC 763127 c.-243G>T upstream_gene_variant 0.18
rpoC 763130 c.-240G>A upstream_gene_variant 0.16
rpoC 763133 c.-237G>C upstream_gene_variant 0.18
rpoC 763136 c.-234C>T upstream_gene_variant 0.34
rpoC 763158 c.-212C>T upstream_gene_variant 0.31
rpoC 763166 c.-204A>G upstream_gene_variant 0.36
rpoC 763169 c.-201A>G upstream_gene_variant 0.21
rpoC 763202 c.-168A>C upstream_gene_variant 0.21
rpoC 763205 c.-165G>C upstream_gene_variant 0.19
rpoC 763206 c.-164_-162delAGTinsTCC upstream_gene_variant 0.22
rpoC 763214 c.-156T>C upstream_gene_variant 0.32
rpoC 763226 c.-144A>G upstream_gene_variant 0.29
rpoB 763227 p.Leu1141Met missense_variant 0.19
rpoC 763238 c.-132T>C upstream_gene_variant 0.27
rpoC 763259 c.-111G>C upstream_gene_variant 0.14
rpoC 763375 c.6C>A synonymous_variant 0.16
rpoC 763430 c.61_63delAGGinsCGC synonymous_variant 0.17
rpoC 763444 c.75T>C synonymous_variant 0.18
rpoC 763468 c.99G>C synonymous_variant 0.29
rpoC 763486 c.117T>C synonymous_variant 0.31
rpoC 763492 c.123G>C synonymous_variant 0.24
rpoC 763528 c.159G>A synonymous_variant 0.33
rpoC 763531 c.162G>T synonymous_variant 0.15
rpoC 763546 c.177A>G synonymous_variant 0.35
rpoC 763570 c.201G>T synonymous_variant 0.29
rpoC 763573 c.204G>C synonymous_variant 0.28
rpoC 763594 c.225C>T synonymous_variant 0.45
rpoC 763606 c.237C>T synonymous_variant 0.26
rpoC 763633 c.264T>C synonymous_variant 0.22
rpoC 763660 c.291T>G synonymous_variant 0.43
rpoC 763666 c.297G>A synonymous_variant 0.22
rpoC 763675 c.306C>G synonymous_variant 0.26
rpoC 763696 c.327T>C synonymous_variant 0.18
rpoC 763699 c.330G>C synonymous_variant 0.17
rpoC 763702 c.333C>G synonymous_variant 0.35
rpoC 763708 c.339G>T synonymous_variant 0.17
rpoC 763714 c.345G>C synonymous_variant 0.29
rpoC 763717 c.348T>C synonymous_variant 0.2
rpoC 763732 c.363C>T synonymous_variant 0.19
rpoC 763741 c.372C>T synonymous_variant 0.22
rpoC 763744 c.375G>C synonymous_variant 0.17
rpoC 763879 c.510A>G synonymous_variant 0.18
rpoC 763888 c.519G>C synonymous_variant 0.18
rpoC 763891 c.522G>C synonymous_variant 0.18
rpoC 763894 c.525A>G synonymous_variant 0.18
rpoC 763900 c.531G>C synonymous_variant 0.18
rpoC 763921 c.552G>C synonymous_variant 0.14
rpoC 763933 c.564C>T synonymous_variant 0.15
rpoC 763945 c.576T>C synonymous_variant 0.2
rpoC 763960 c.591T>G synonymous_variant 0.15
rpoC 763967 p.Gly200Ser missense_variant 0.17
rpoC 763987 c.618C>T synonymous_variant 0.27
rpoC 763991 p.Ile208Leu missense_variant 0.3
rpoC 763996 c.627T>C synonymous_variant 0.42
rpoC 764002 c.633C>T synonymous_variant 0.2
rpoC 764005 c.636G>C synonymous_variant 0.46
rpoC 764024 c.655_657delTTGinsCTC synonymous_variant 0.5
rpoC 764029 p.Glu220Asp missense_variant 0.25
rpoC 764032 p.Asp221Glu missense_variant 0.29
rpoC 764040 p.Ser224Asn missense_variant 0.36
rpoC 764044 c.675T>C synonymous_variant 0.43
rpoC 764056 c.687G>C synonymous_variant 0.29
rpoC 764059 c.690G>T synonymous_variant 0.35
rpoC 764071 c.702G>C synonymous_variant 0.27
rpoC 764083 c.714A>G synonymous_variant 0.32
rpoC 764084 p.Asn239Val missense_variant 0.24
rpoC 764098 c.729A>G synonymous_variant 0.28
rpoC 764101 c.732C>G synonymous_variant 0.27
rpoC 764102 p.Val245Gln missense_variant 0.23
rpoC 764131 c.762T>C synonymous_variant 0.28
rpoC 764153 p.Gln262Lys missense_variant 0.23
rpoC 764161 c.792G>C synonymous_variant 0.2
rpoC 764188 c.819A>G synonymous_variant 0.26
rpoC 764203 c.834G>C synonymous_variant 0.25
rpoC 764206 p.Asp279Glu missense_variant 0.28
rpoC 764215 c.846A>C synonymous_variant 0.29
rpoC 764217 p.Asn283Ser missense_variant 0.29
rpoC 764227 c.858G>C synonymous_variant 0.29
rpoC 764239 c.870T>G synonymous_variant 0.27
rpoC 764242 c.873C>T synonymous_variant 0.28
rpoC 764245 c.876C>G synonymous_variant 0.28
rpoC 764254 c.885G>C synonymous_variant 0.3
rpoC 764263 c.894G>C synonymous_variant 0.26
rpoC 764266 c.897T>C synonymous_variant 0.3
rpoC 764272 c.903G>C synonymous_variant 0.31
rpoC 764278 c.909A>G synonymous_variant 0.33
rpoC 764296 c.927G>C synonymous_variant 0.31
rpoC 764320 c.951C>T synonymous_variant 0.38
rpoC 764353 c.984G>C synonymous_variant 0.33
rpoC 764365 c.996C>T synonymous_variant 0.38
rpoC 764371 c.1002G>C synonymous_variant 0.31
rpoC 764377 c.1008C>G synonymous_variant 0.3
rpoC 764380 c.1011G>C synonymous_variant 0.29
rpoC 764387 c.1018T>C synonymous_variant 0.3
rpoC 764405 c.1036_1038delAGGinsCGC synonymous_variant 0.37
rpoC 764429 c.1060C>T synonymous_variant 0.3
rpoC 764434 c.1065A>G synonymous_variant 0.35
rpoC 764435 c.1066_1068delAGGinsCGA synonymous_variant 0.29
rpoC 764446 c.1077T>C synonymous_variant 0.33
rpoC 764449 c.1080G>C synonymous_variant 0.32
rpoC 764458 c.1089G>C synonymous_variant 0.31
rpoC 764461 c.1092A>G synonymous_variant 0.31
rpoC 764485 c.1116G>C synonymous_variant 0.22
rpoC 764497 c.1128A>G synonymous_variant 0.25
rpoC 764500 c.1131C>G synonymous_variant 0.18
rpoC 764521 c.1152T>C synonymous_variant 0.19
rpoC 764536 c.1167G>C synonymous_variant 0.16
rpoC 764539 c.1170C>G synonymous_variant 0.16
rpoC 764575 c.1206T>G synonymous_variant 0.17
rpoC 764602 c.1233C>T synonymous_variant 0.19
rpoC 764611 c.1242G>T synonymous_variant 0.23
rpoC 764626 c.1257C>T synonymous_variant 0.26
rpoC 764632 c.1263T>C synonymous_variant 0.27
rpoC 764650 c.1281G>T synonymous_variant 0.29
rpoC 764716 c.1347G>C synonymous_variant 0.35
rpoC 764746 c.1377G>C synonymous_variant 0.21
rpoC 764752 c.1383G>C synonymous_variant 0.28
rpoC 764758 c.1389C>G synonymous_variant 0.23
rpoC 764764 c.1395T>C synonymous_variant 0.28
rpoC 764797 c.1428G>C synonymous_variant 0.24
rpoC 764803 c.1434C>T synonymous_variant 0.28
rpoC 764809 c.1440C>T synonymous_variant 0.29
rpoC 764812 c.1443C>G synonymous_variant 0.19
rpoC 764815 c.1446A>G synonymous_variant 0.27
rpoC 764824 c.1455T>C synonymous_variant 0.21
rpoC 764858 c.1489T>C synonymous_variant 0.33
rpoC 764878 c.1509C>G synonymous_variant 0.21
rpoC 764887 c.1518G>C synonymous_variant 0.24
rpoC 764888 c.1519_1521delTTGinsCTT synonymous_variant 0.29
rpoC 764893 c.1524T>C synonymous_variant 0.26
rpoC 764911 c.1542A>G synonymous_variant 0.24
rpoC 764912 p.Met515Gln missense_variant 0.24
rpoC 764920 c.1551G>C synonymous_variant 0.24
rpoC 764923 c.1554A>G synonymous_variant 0.24
rpoC 764935 c.1566T>C synonymous_variant 0.28
rpoC 764948 c.1579T>C synonymous_variant 0.21
rpoC 764962 c.1593G>C synonymous_variant 0.22
rpoC 764968 c.1599T>C synonymous_variant 0.26
rpoC 764983 c.1614T>C synonymous_variant 0.25
rpoC 765004 c.1635G>T synonymous_variant 0.18
rpoC 765007 c.1638T>G synonymous_variant 0.24
rpoC 765008 c.1639T>C synonymous_variant 0.24
rpoC 765016 c.1647C>G synonymous_variant 0.21
rpoC 765019 c.1650A>G synonymous_variant 0.26
rpoC 765034 c.1665T>C synonymous_variant 0.19
rpoC 765040 c.1671T>C synonymous_variant 0.25
rpoC 765041 c.1672T>C synonymous_variant 0.24
rpoC 765047 c.1678T>C synonymous_variant 0.24
rpoC 765259 c.1890G>C synonymous_variant 0.19
rpoC 765292 c.1923G>T synonymous_variant 0.18
rpoC 765300 p.Val644Ala missense_variant 0.18
rpoC 765338 p.Gln657Lys missense_variant 0.24
rpoC 765357 p.Met663Thr missense_variant 0.35
rpoC 765367 c.1998C>G synonymous_variant 0.27
rpoC 765370 c.2001G>C synonymous_variant 0.3
rpoC 765373 c.2004G>C synonymous_variant 0.26
rpoC 765404 p.Leu679Lys missense_variant 0.29
rpoC 765407 p.Gly680Ser missense_variant 0.29
rpoC 765425 p.Lys686Glu missense_variant 0.32
rpoC 765445 c.2076G>C synonymous_variant 0.27
rpoC 765452 p.Ala695Arg missense_variant 0.29
rpoC 765478 c.2109T>C synonymous_variant 0.26
rpoC 765480 p.Tyr704Phe missense_variant 0.26
rpoC 765496 c.2127C>G synonymous_variant 0.25
rpoC 765499 c.2130C>G synonymous_variant 0.23
rpoC 765875 p.Val836Ile missense_variant 0.15
rpoC 765886 c.2517C>G synonymous_variant 0.28
rpoC 765904 c.2535C>G synonymous_variant 0.26
rpoC 765934 c.2565C>T synonymous_variant 0.21
rpoC 765937 c.2568T>C synonymous_variant 0.3
rpoC 765940 c.2571A>T synonymous_variant 0.17
rpoC 765946 c.2577C>T synonymous_variant 0.17
rpoC 765947 c.2578T>C synonymous_variant 0.23
rpoC 765952 c.2583G>C synonymous_variant 0.17
rpoC 765961 c.2592G>T synonymous_variant 0.18
rpoC 765962 c.2593_2595delTTGinsCTT synonymous_variant 0.22
rpoC 765967 c.2598C>T synonymous_variant 0.16
rpoC 765979 c.2610C>G synonymous_variant 0.3
rpoC 765982 c.2613C>T synonymous_variant 0.31
rpoC 765994 c.2625A>T synonymous_variant 0.33
rpoC 766012 c.2643C>G synonymous_variant 0.26
rpoC 766021 c.2652G>C synonymous_variant 0.34
rpoC 766027 c.2658G>C synonymous_variant 0.28
rpoC 766043 p.Gln892Glu missense_variant 0.25
rpoC 766381 c.3012C>T synonymous_variant 0.17
rpoC 766384 c.3015A>G synonymous_variant 0.17
rpoC 766408 c.3039C>T synonymous_variant 0.17
rpoC 766573 c.3204T>C synonymous_variant 0.17
rpoC 766583 p.Gly1072Ser missense_variant 0.17
rpoC 766594 c.3225G>C synonymous_variant 0.17
rpoC 766607 p.Ile1080Leu missense_variant 0.18
rpoC 766645 c.3276A>G synonymous_variant 0.17
rpoC 766738 c.3369G>T synonymous_variant 0.19
rpoC 766741 c.3372G>C synonymous_variant 0.16
rpoC 766750 c.3381C>G synonymous_variant 0.19
rpoC 766765 c.3396A>C synonymous_variant 0.21
rpoC 766771 c.3402G>C synonymous_variant 0.19
rpoC 766774 c.3405T>C synonymous_variant 0.23
rpoC 766775 p.Arg1136Lys missense_variant 0.19
rpoC 766798 c.3429C>G synonymous_variant 0.24
rpoC 766804 c.3435A>G synonymous_variant 0.29
rpoC 766807 c.3438T>C synonymous_variant 0.25
rpoC 766837 c.3468G>C synonymous_variant 0.19
rpoC 766843 c.3474T>C synonymous_variant 0.18
rpoC 766846 c.3477C>G synonymous_variant 0.17
rpoC 766858 c.3489C>T synonymous_variant 0.19
rpoC 766861 c.3492G>C synonymous_variant 0.24
rpoC 766864 c.3495G>C synonymous_variant 0.26
rpoC 766894 c.3525T>C synonymous_variant 0.21
rpoC 766895 c.3526T>C synonymous_variant 0.22
rpoC 766900 c.3531T>C synonymous_variant 0.22
rpoC 766903 c.3534C>T synonymous_variant 0.16
rpoC 766933 c.3564A>G synonymous_variant 0.21
rpoC 766945 c.3576A>G synonymous_variant 0.22
rpoC 766960 c.3591C>T synonymous_variant 0.21
rpoC 766963 c.3594T>C synonymous_variant 0.24
rpoC 766975 c.3606C>A synonymous_variant 0.18
rpoC 766996 c.3627C>T synonymous_variant 0.36
rpoC 767002 c.3633G>C synonymous_variant 0.2
rpoC 767023 c.3654C>T synonymous_variant 0.26
rpoC 767062 c.3693C>A synonymous_variant 0.16
rpoC 767098 c.3729T>C synonymous_variant 0.37
rpoC 767104 c.3735C>G synonymous_variant 0.24
rpoC 767119 c.3750A>G synonymous_variant 0.3
rpoC 767163 p.Asn1265Ser missense_variant 0.2
rpoC 767180 p.Ala1271Gln missense_variant 0.22
rpoC 767191 c.3822C>G synonymous_variant 0.23
rpoC 767197 c.3828G>A synonymous_variant 0.23
rpoC 767206 c.3837C>T synonymous_variant 0.2
rpoC 767209 c.3840T>C synonymous_variant 0.19
rpoC 767212 c.3843G>T synonymous_variant 0.2
rpoC 767221 c.3852C>G synonymous_variant 0.24
rpoC 767230 c.3861G>C synonymous_variant 0.22
rpoC 767233 c.3864T>C synonymous_variant 0.21
rpoC 767263 c.3894T>C synonymous_variant 0.19
rpoC 767264 p.Ala1299Gln missense_variant 0.19
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 775817 c.2664T>C synonymous_variant 0.19
mmpL5 775856 c.2625T>C synonymous_variant 0.21
mmpL5 775862 c.2619G>C synonymous_variant 0.18
mmpL5 775865 c.2616T>C synonymous_variant 0.22
mmpL5 775886 c.2595A>C synonymous_variant 0.18
mmpL5 775909 p.Leu858Ile missense_variant 0.19
mmpL5 775910 c.2571G>C synonymous_variant 0.31
mmpL5 775913 p.Ala856Ser missense_variant 0.3
mmpL5 775916 c.2565T>G synonymous_variant 0.2
mmpL5 775940 c.2541C>T synonymous_variant 0.17
mmpL5 775955 p.Ile842Val missense_variant 0.23
mmpL5 775961 c.2520C>G synonymous_variant 0.17
mmpL5 775981 p.Leu834Met missense_variant 0.24
mmpL5 776009 c.2472A>G synonymous_variant 0.23
mmpL5 776030 c.2451G>T synonymous_variant 0.16
mmpL5 776100 p.Thr794Ile missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781655 c.96T>C synonymous_variant 0.19
rpsL 781706 c.147T>C synonymous_variant 0.18
rpsL 781715 c.156T>C synonymous_variant 0.29
rpsL 781718 c.159C>G synonymous_variant 0.21
rpsL 781728 c.169T>C synonymous_variant 0.31
rpsL 781733 c.174G>C synonymous_variant 0.23
rpsL 781736 c.177T>C synonymous_variant 0.33
rpsL 781742 c.183C>T synonymous_variant 0.25
rpsL 781748 c.189C>G synonymous_variant 0.27
rpsL 781751 c.192G>C synonymous_variant 0.22
rpsL 781754 c.195G>T synonymous_variant 0.2
rpsL 781760 c.201T>C synonymous_variant 0.18
rpsL 781763 c.204C>G synonymous_variant 0.17
rpsL 781769 c.210G>A synonymous_variant 0.21
rpsL 781808 c.249C>T synonymous_variant 0.24
rpsL 781814 c.255C>T synonymous_variant 0.16
rpsL 781817 c.258G>T synonymous_variant 0.21
rpsL 781832 c.273T>C synonymous_variant 0.28
rpsL 781838 c.279G>C synonymous_variant 0.22
rpsL 781841 c.282C>T synonymous_variant 0.22
rpsL 781865 c.306G>C synonymous_variant 0.28
rpsL 781868 c.309T>C synonymous_variant 0.33
rpsL 781871 c.312G>C synonymous_variant 0.4
rpsL 781880 c.321C>G synonymous_variant 0.38
rpsL 781892 c.333A>G synonymous_variant 0.36
rpsL 781898 c.339A>C synonymous_variant 0.35
rpsL 781907 c.348T>C synonymous_variant 0.32
rpsL 781910 c.351C>T synonymous_variant 0.29
rpsL 781916 c.357T>G synonymous_variant 0.35
rpsL 781929 p.Gly124Ser missense_variant 0.41
rpsL 781933 c.374G>A splice_region_variant&stop_retained_variant 0.3
rplC 800612 c.-197A>G upstream_gene_variant 0.22
rplC 800618 c.-191T>C upstream_gene_variant 0.26
rplC 800633 c.-176T>C upstream_gene_variant 0.33
rplC 800642 c.-167C>T upstream_gene_variant 0.23
rplC 800645 c.-164C>G upstream_gene_variant 0.33
rplC 800648 c.-161A>T upstream_gene_variant 0.26
rplC 800654 c.-155T>C upstream_gene_variant 0.27
rplC 800693 c.-116A>G upstream_gene_variant 0.27
rplC 800714 c.-95C>T upstream_gene_variant 0.21
rplC 800715 c.-94A>C upstream_gene_variant 0.37
rplC 800720 c.-89T>C upstream_gene_variant 0.32
rplC 800723 c.-86C>G upstream_gene_variant 0.33
rplC 800729 c.-80G>C upstream_gene_variant 0.25
rplC 800744 c.-65G>T upstream_gene_variant 0.33
rplC 800745 c.-64_-62delCTCinsTTG upstream_gene_variant 0.2
rplC 800759 c.-50C>T upstream_gene_variant 0.46
rplC 800762 c.-47T>G upstream_gene_variant 0.42
rplC 800768 c.-41C>A upstream_gene_variant 0.25
rplC 800844 c.36T>C synonymous_variant 0.21
rplC 800856 c.48A>G synonymous_variant 0.19
rplC 800865 c.57A>G synonymous_variant 0.36
rplC 800867 p.Ser20Asn missense_variant 0.36
rplC 800872 p.Arg22Gln missense_variant 0.14
rplC 800877 c.69A>C synonymous_variant 0.33
rplC 800880 c.72A>C synonymous_variant 0.21
rplC 800892 c.84G>C synonymous_variant 0.18
rplC 800907 c.99C>G synonymous_variant 0.29
rplC 800916 c.108A>G synonymous_variant 0.29
rplC 800931 c.123G>C synonymous_variant 0.24
rplC 800934 c.126C>G synonymous_variant 0.18
rplC 800937 c.129A>G synonymous_variant 0.29
rplC 800940 c.132C>T synonymous_variant 0.25
rplC 800946 c.138T>C synonymous_variant 0.21
rplC 800949 c.141T>C synonymous_variant 0.28
rplC 800970 c.162T>C synonymous_variant 0.29
rplC 800985 c.177A>G synonymous_variant 0.18
rplC 801454 p.Glu216Gln missense_variant 0.95
fbiC 1302899 c.-32A>G upstream_gene_variant 1.0
fbiC 1303794 c.864A>G synonymous_variant 0.14
fbiC 1303827 p.Glu299Asp missense_variant 0.18
fbiC 1303844 p.Ala305Asp missense_variant 0.17
fbiC 1303860 c.930A>C synonymous_variant 0.19
fbiC 1303866 p.Glu312Asp missense_variant 0.19
fbiC 1303871 p.Tyr314Phe missense_variant 0.2
fbiC 1303881 c.951G>C synonymous_variant 0.28
fbiC 1303884 c.954T>C synonymous_variant 0.27
fbiC 1303891 p.Ala321Thr missense_variant 0.27
fbiC 1303908 c.978C>G synonymous_variant 0.27
fbiC 1303912 p.Gly328Lys missense_variant 0.29
fbiC 1303947 c.1017T>G synonymous_variant 0.18
fbiC 1303948 p.Gly340Arg missense_variant 0.18
fbiC 1303969 p.Val347Ile missense_variant 0.15
fbiC 1304001 c.1071C>G synonymous_variant 0.17
fbiC 1304008 c.1078T>C synonymous_variant 0.21
fbiC 1304136 c.1206C>T synonymous_variant 0.16
fbiC 1304142 c.1212G>C synonymous_variant 0.17
fbiC 1304472 c.1542T>C synonymous_variant 0.17
fbiC 1304481 c.1551T>G synonymous_variant 0.16
fbiC 1304496 c.1566T>C synonymous_variant 0.19
fbiC 1304499 c.1569T>G synonymous_variant 0.17
fbiC 1304532 c.1602G>A synonymous_variant 0.24
fbiC 1304533 c.1603T>C synonymous_variant 0.27
fbiC 1304545 p.Val539Thr missense_variant 0.18
fbiC 1304553 c.1623C>T synonymous_variant 0.24
fbiC 1304559 p.Glu543Asp missense_variant 0.38
fbiC 1304562 c.1632G>C synonymous_variant 0.32
fbiC 1304565 c.1635C>G synonymous_variant 0.32
fbiC 1304568 c.1638T>C synonymous_variant 0.39
fbiC 1304571 c.1641G>C synonymous_variant 0.25
fbiC 1304580 c.1650T>C synonymous_variant 0.4
fbiC 1304613 c.1683T>C synonymous_variant 0.39
fbiC 1304634 c.1704C>G synonymous_variant 0.32
fbiC 1304640 c.1710A>C synonymous_variant 0.32
fbiC 1304646 c.1716T>C synonymous_variant 0.29
fbiC 1304658 c.1728C>G synonymous_variant 0.23
fbiC 1304667 c.1737G>C synonymous_variant 0.17
fbiC 1304675 p.Gly582Asp missense_variant 0.26
fbiC 1304694 c.1764A>C synonymous_variant 0.22
fbiC 1304703 c.1773C>G synonymous_variant 0.18
fbiC 1304712 c.1782C>A synonymous_variant 0.16
fbiC 1304715 c.1785G>T synonymous_variant 0.21
fbiC 1304724 c.1794A>G synonymous_variant 0.26
fbiC 1304727 c.1797A>G synonymous_variant 0.23
fbiC 1304742 c.1812T>C synonymous_variant 0.16
fbiC 1304748 c.1818T>C synonymous_variant 0.25
fbiC 1304754 c.1824G>A synonymous_variant 0.19
fbiC 1304757 c.1827A>G synonymous_variant 0.18
fbiC 1304784 c.1854T>G synonymous_variant 0.18
fbiC 1304790 c.1860C>G synonymous_variant 0.15
fbiC 1304808 c.1878C>G synonymous_variant 0.24
fbiC 1304811 c.1881C>G synonymous_variant 0.24
fbiC 1304817 c.1887T>C synonymous_variant 0.19
fbiC 1304823 c.1893C>T synonymous_variant 0.15
fbiC 1304829 c.1899T>C synonymous_variant 0.3
fbiC 1304832 c.1902C>G synonymous_variant 0.25
fbiC 1304869 c.1939C>T synonymous_variant 0.21
fbiC 1305099 c.2169T>C synonymous_variant 0.19
fbiC 1305125 p.Arg732His missense_variant 0.14
fbiC 1305144 c.2214G>A synonymous_variant 0.17
fbiC 1305150 c.2220C>G synonymous_variant 0.18
fbiC 1305154 c.2224T>C synonymous_variant 0.2
atpE 1460855 c.-190T>C upstream_gene_variant 0.25
atpE 1461149 c.105T>G synonymous_variant 0.19
atpE 1461159 p.Val39Ile missense_variant 0.2
atpE 1461185 c.141G>C synonymous_variant 0.23
atpE 1461189 c.145C>T synonymous_variant 0.18
atpE 1461194 c.150C>T synonymous_variant 0.18
atpE 1461197 c.153A>G synonymous_variant 0.2
atpE 1461219 c.175T>C synonymous_variant 0.23
atpE 1461224 c.180T>C synonymous_variant 0.17
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471925 n.80T>C non_coding_transcript_exon_variant 0.21
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 0.26
rrs 1471935 n.90T>C non_coding_transcript_exon_variant 0.7
rrs 1471986 n.141C>T non_coding_transcript_exon_variant 0.27
rrs 1472019 n.174G>A non_coding_transcript_exon_variant 0.19
rrs 1472053 n.211_212delGC non_coding_transcript_exon_variant 0.26
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 0.33
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.26
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.35
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.5
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.39
rrs 1472286 n.441C>G non_coding_transcript_exon_variant 0.18
rrs 1472289 n.444T>C non_coding_transcript_exon_variant 0.18
rrs 1472290 n.445C>A non_coding_transcript_exon_variant 0.18
rrs 1472297 n.453_465delGTCCGGGTTCTCT non_coding_transcript_exon_variant 0.21
rrs 1472315 n.470T>G non_coding_transcript_exon_variant 0.22
rrs 1472337 n.492C>G non_coding_transcript_exon_variant 0.17
rrs 1472380 n.535G>C non_coding_transcript_exon_variant 0.23
rrs 1472446 n.601T>A non_coding_transcript_exon_variant 0.33
rrs 1472452 n.607G>A non_coding_transcript_exon_variant 0.35
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.41
rrs 1472489 n.644A>T non_coding_transcript_exon_variant 0.26
rrs 1472755 n.910G>A non_coding_transcript_exon_variant 0.21
rrs 1472847 n.1002G>C non_coding_transcript_exon_variant 0.31
rrs 1472848 n.1003T>G non_coding_transcript_exon_variant 0.45
rrs 1472849 n.1004C>G non_coding_transcript_exon_variant 0.45
rrs 1472850 n.1005T>C non_coding_transcript_exon_variant 0.24
rrs 1472857 n.1012A>G non_coding_transcript_exon_variant 0.24
rrs 1472858 n.1013G>T non_coding_transcript_exon_variant 0.43
rrs 1472859 n.1014G>C non_coding_transcript_exon_variant 0.43
rrs 1472860 n.1015C>G non_coding_transcript_exon_variant 0.31
rrs 1472912 n.1067C>T non_coding_transcript_exon_variant 0.14
rrs 1472917 n.1072G>A non_coding_transcript_exon_variant 0.16
rrs 1472953 n.1108G>A non_coding_transcript_exon_variant 0.21
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.24
rrs 1472982 n.1137G>A non_coding_transcript_exon_variant 0.18
rrs 1472988 n.1143T>A non_coding_transcript_exon_variant 0.2
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.21
rrs 1473002 n.1157G>T non_coding_transcript_exon_variant 0.2
rrs 1473004 n.1159T>A non_coding_transcript_exon_variant 0.19
rrs 1473008 n.1163C>A non_coding_transcript_exon_variant 0.19
rrs 1473009 n.1164T>C non_coding_transcript_exon_variant 0.19
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.5
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.48
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.48
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.47
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.29
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.41
rrl 1473717 n.60G>A non_coding_transcript_exon_variant 0.25
rrl 1473731 n.74T>A non_coding_transcript_exon_variant 0.25
rrl 1473746 n.89T>C non_coding_transcript_exon_variant 0.22
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.38
rrl 1473770 n.113T>G non_coding_transcript_exon_variant 0.25
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.33
rrl 1474083 n.426C>T non_coding_transcript_exon_variant 0.18
rrl 1474093 n.436G>A non_coding_transcript_exon_variant 0.18
rrl 1474103 n.446A>T non_coding_transcript_exon_variant 0.18
rrl 1474127 n.470G>A non_coding_transcript_exon_variant 0.15
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.38
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.31
rrl 1474174 n.517A>G non_coding_transcript_exon_variant 0.18
rrl 1474181 n.524C>T non_coding_transcript_exon_variant 0.25
rrl 1474183 n.526T>C non_coding_transcript_exon_variant 0.18
rrl 1474185 n.528G>A non_coding_transcript_exon_variant 0.23
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.32
rrl 1474287 n.635_649delTTCCTCTCCGGAGGA non_coding_transcript_exon_variant 0.18
rrl 1474308 n.651G>T non_coding_transcript_exon_variant 0.41
rrl 1474310 n.653T>G non_coding_transcript_exon_variant 0.37
rrl 1474356 n.699T>C non_coding_transcript_exon_variant 0.24
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.27
rrl 1474376 n.719T>C non_coding_transcript_exon_variant 0.14
rrl 1474432 n.775C>T non_coding_transcript_exon_variant 0.15
rrl 1474446 n.789C>T non_coding_transcript_exon_variant 0.21
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.17
rrl 1474629 n.972G>A non_coding_transcript_exon_variant 0.18
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.27
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 0.3
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 0.27
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 0.27
rrl 1474639 n.982G>C non_coding_transcript_exon_variant 0.3
rrl 1474673 n.1016T>C non_coding_transcript_exon_variant 0.33
rrl 1474676 n.1019T>A non_coding_transcript_exon_variant 0.33
rrl 1474677 n.1020A>G non_coding_transcript_exon_variant 0.22
rrl 1474720 n.1063C>T non_coding_transcript_exon_variant 0.15
rrl 1474753 n.1096A>G non_coding_transcript_exon_variant 0.19
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.25
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.35
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.41
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.35
rrl 1475061 n.1404C>T non_coding_transcript_exon_variant 0.38
rrl 1475062 n.1405A>T non_coding_transcript_exon_variant 0.2
rrl 1475209 n.1552G>A non_coding_transcript_exon_variant 0.18
rrl 1475355 n.1698C>T non_coding_transcript_exon_variant 0.38
rrl 1475363 n.1706C>T non_coding_transcript_exon_variant 0.25
rrl 1475369 n.1712G>T non_coding_transcript_exon_variant 0.29
rrl 1475387 n.1730C>T non_coding_transcript_exon_variant 0.18
rrl 1475402 n.1745C>T non_coding_transcript_exon_variant 0.27
rrl 1475419 n.1762C>T non_coding_transcript_exon_variant 0.25
rrl 1475429 n.1772G>A non_coding_transcript_exon_variant 0.25
rrl 1475452 n.1795C>A non_coding_transcript_exon_variant 0.2
rrl 1475460 n.1803A>G non_coding_transcript_exon_variant 0.2
rrl 1475760 n.2103C>T non_coding_transcript_exon_variant 0.27
rrl 1475762 n.2105G>C non_coding_transcript_exon_variant 0.2
rrl 1475763 n.2106C>T non_coding_transcript_exon_variant 0.25
rrl 1475916 n.2259C>T non_coding_transcript_exon_variant 0.2
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.45
rrl 1475991 n.2334T>C non_coding_transcript_exon_variant 0.45
rrl 1475995 n.2338G>A non_coding_transcript_exon_variant 0.55
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 0.25
rrl 1476033 n.2376T>G non_coding_transcript_exon_variant 0.29
rrl 1476034 n.2377C>T non_coding_transcript_exon_variant 0.43
rrl 1476035 n.2378G>C non_coding_transcript_exon_variant 0.29
rrl 1476044 n.2387T>G non_coding_transcript_exon_variant 0.29
rrl 1476045 n.2388G>A non_coding_transcript_exon_variant 0.33
rrl 1476046 n.2389G>T non_coding_transcript_exon_variant 0.29
rrl 1476047 n.2390G>T non_coding_transcript_exon_variant 0.43
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.43
rrl 1476088 n.2431A>C non_coding_transcript_exon_variant 0.38
rrl 1476103 n.2446C>G non_coding_transcript_exon_variant 0.33
rrl 1476105 n.2448G>A non_coding_transcript_exon_variant 0.38
rrl 1476106 n.2449A>T non_coding_transcript_exon_variant 0.44
rrl 1476110 n.2453G>C non_coding_transcript_exon_variant 0.33
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.4
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.33
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.46
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.46
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.54
rrl 1476251 n.2594T>G non_coding_transcript_exon_variant 0.58
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.23
rrl 1476256 n.2599A>T non_coding_transcript_exon_variant 0.47
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.47
rrl 1476280 n.2623A>C non_coding_transcript_exon_variant 0.19
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.4
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 0.35
rrl 1476299 n.2642C>T non_coding_transcript_exon_variant 0.24
rrl 1476353 n.2696G>T non_coding_transcript_exon_variant 0.14
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 0.19
rrl 1476372 n.2715T>C non_coding_transcript_exon_variant 0.18
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 0.19
rrl 1476383 n.2726T>A non_coding_transcript_exon_variant 0.16
rrl 1476408 n.2751G>A non_coding_transcript_exon_variant 0.16
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.25
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.19
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.19
rrl 1476514 n.2857C>T non_coding_transcript_exon_variant 0.18
rrl 1476529 n.2872A>G non_coding_transcript_exon_variant 0.39
rrl 1476583 n.2926G>C non_coding_transcript_exon_variant 0.5
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.41
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.65
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.5
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.24
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.61
rrl 1476665 n.3008T>C non_coding_transcript_exon_variant 0.33
rrl 1476666 n.3009C>T non_coding_transcript_exon_variant 0.28
rrl 1476674 n.3017T>C non_coding_transcript_exon_variant 0.67
rrl 1476679 n.3022T>C non_coding_transcript_exon_variant 0.71
rrl 1476689 n.3032A>T non_coding_transcript_exon_variant 0.4
rrl 1476690 n.3033C>T non_coding_transcript_exon_variant 0.4
rrl 1476692 n.3035T>A non_coding_transcript_exon_variant 0.64
rrl 1476693 n.3036G>A non_coding_transcript_exon_variant 0.43
rrl 1476695 n.3038T>A non_coding_transcript_exon_variant 0.36
rrl 1476716 n.3059A>C non_coding_transcript_exon_variant 0.45
rrl 1476723 n.3066T>A non_coding_transcript_exon_variant 0.5
rrl 1476725 n.3068C>T non_coding_transcript_exon_variant 0.2
rrl 1476726 n.3069A>G non_coding_transcript_exon_variant 0.36
rrl 1476731 n.3074G>A non_coding_transcript_exon_variant 0.4
rrl 1476732 n.3075T>C non_coding_transcript_exon_variant 0.5
rrl 1476746 n.3089T>C non_coding_transcript_exon_variant 0.25
rrl 1476747 n.3090C>T non_coding_transcript_exon_variant 0.22
rrl 1476750 n.3093T>C non_coding_transcript_exon_variant 0.22
rrl 1476754 n.3097G>A non_coding_transcript_exon_variant 0.2
rrl 1476759 n.3102T>C non_coding_transcript_exon_variant 0.33
rrl 1476770 n.3113T>C non_coding_transcript_exon_variant 0.33
rrl 1476771 n.3114G>A non_coding_transcript_exon_variant 0.33
inhA 1673715 c.-487C>G upstream_gene_variant 0.96
inhA 1674542 p.Ala114Glu missense_variant 0.23
inhA 1674576 c.375T>C synonymous_variant 0.17
inhA 1674582 c.381T>C synonymous_variant 0.26
inhA 1674585 c.384T>C synonymous_variant 0.19
inhA 1674589 p.Met130Leu missense_variant 0.22
inhA 1674624 c.423A>C synonymous_variant 0.17
inhA 1674654 c.453G>C synonymous_variant 0.17
inhA 1674656 p.Ser152Thr missense_variant 0.22
inhA 1674660 c.459G>C synonymous_variant 0.22
inhA 1674663 c.462G>C synonymous_variant 0.17
inhA 1674703 c.502_504delTTGinsCTC synonymous_variant 0.36
inhA 1674708 c.507G>A synonymous_variant 0.22
inhA 1674718 c.517A>C synonymous_variant 0.28
inhA 1674726 c.525G>C synonymous_variant 0.21
inhA 1674729 c.528G>C synonymous_variant 0.24
inhA 1674745 p.Tyr182Val missense_variant 0.22
inhA 1674756 c.555T>C synonymous_variant 0.31
inhA 1674771 c.570C>G synonymous_variant 0.26
inhA 1674777 c.576C>A synonymous_variant 0.15
inhA 1674780 c.579T>G synonymous_variant 0.31
inhA 1674801 c.600T>C synonymous_variant 0.24
inhA 1674804 c.603G>A synonymous_variant 0.17
inhA 1674810 c.609C>G synonymous_variant 0.2
rpsA 1833589 c.48A>T synonymous_variant 0.17
rpsA 1833595 c.54T>C synonymous_variant 0.2
rpsA 1833619 c.78A>C synonymous_variant 0.18
rpsA 1833727 c.186G>C synonymous_variant 0.22
rpsA 1833742 c.201A>G synonymous_variant 0.18
rpsA 1833745 c.204G>C synonymous_variant 0.22
rpsA 1833778 c.237C>T synonymous_variant 0.16
rpsA 1833781 c.240T>G synonymous_variant 0.16
rpsA 1833787 c.246C>G synonymous_variant 0.18
rpsA 1833790 c.249T>C synonymous_variant 0.29
rpsA 1833805 c.264C>T synonymous_variant 0.19
rpsA 1833811 c.270G>C synonymous_variant 0.27
rpsA 1833829 c.288A>G synonymous_variant 0.22
rpsA 1833832 c.291G>A synonymous_variant 0.24
rpsA 1833838 c.297G>A synonymous_variant 0.21
rpsA 1833841 c.300C>G synonymous_variant 0.31
rpsA 1833847 c.306C>G synonymous_variant 0.36
rpsA 1833856 c.315A>G synonymous_variant 0.31
rpsA 1833862 c.321G>T synonymous_variant 0.21
rpsA 1833892 c.351G>A synonymous_variant 0.17
rpsA 1833894 p.Ala118Glu missense_variant 0.17
rpsA 1833979 c.438T>C synonymous_variant 0.31
rpsA 1833988 c.447C>T synonymous_variant 0.27
rpsA 1834000 c.459G>C synonymous_variant 0.32
rpsA 1834009 c.468C>T synonymous_variant 0.21
rpsA 1834012 c.471G>C synonymous_variant 0.32
rpsA 1834015 c.474G>C synonymous_variant 0.26
rpsA 1834021 c.480C>T synonymous_variant 0.26
rpsA 1834030 c.489C>G synonymous_variant 0.33
rpsA 1834069 c.528G>C synonymous_variant 0.26
rpsA 1834096 c.555G>C synonymous_variant 0.25
rpsA 1834099 c.558C>G synonymous_variant 0.28
rpsA 1834102 c.561T>C synonymous_variant 0.33
rpsA 1834261 c.720A>G synonymous_variant 0.16
rpsA 1834303 c.762T>G synonymous_variant 0.25
rpsA 1834306 c.765T>C synonymous_variant 0.25
rpsA 1834348 c.807T>C synonymous_variant 0.29
rpsA 1834361 c.820T>C synonymous_variant 0.24
rpsA 1834366 c.825A>G synonymous_variant 0.3
rpsA 1834378 c.837T>C synonymous_variant 0.24
rpsA 1834387 c.846C>T synonymous_variant 0.19
rpsA 1834396 c.855G>C synonymous_variant 0.3
rpsA 1834411 c.870T>C synonymous_variant 0.32
rpsA 1834423 c.882G>C synonymous_variant 0.37
rpsA 1834432 c.891G>C synonymous_variant 0.25
rpsA 1834451 c.910T>C synonymous_variant 0.32
rpsA 1834456 c.915T>G synonymous_variant 0.22
rpsA 1834468 c.927A>G synonymous_variant 0.3
rpsA 1834489 c.948T>C synonymous_variant 0.36
rpsA 1834513 c.972C>G synonymous_variant 0.34
rpsA 1834520 p.Ala327Ser missense_variant 0.26
rpsA 1834528 c.987T>C synonymous_variant 0.3
rpsA 1834540 c.999G>C synonymous_variant 0.23
rpsA 1834543 c.1002C>G synonymous_variant 0.17
rpsA 1834546 c.1005T>C synonymous_variant 0.29
rpsA 1834558 c.1017_1018insAG frameshift_variant 0.16
rpsA 1834609 c.1068T>C synonymous_variant 0.21
rpsA 1834619 c.1078T>C synonymous_variant 0.2
rpsA 1834622 c.1081_1083delTCGinsAGC synonymous_variant 0.23
rpsA 1834633 c.1092A>G synonymous_variant 0.33
rpsA 1834639 c.1098T>C synonymous_variant 0.32
rpsA 1834667 p.Ala376Ser missense_variant 0.27
rpsA 1834690 c.1149T>C synonymous_variant 0.35
rpsA 1834733 p.Ala398Pro missense_variant 0.19
rpsA 1834786 c.1245A>G synonymous_variant 0.17
rpsA 1834789 c.1248T>C synonymous_variant 0.16
rpsA 1834859 p.Ala440Thr missense_variant 1.0
tlyA 1917972 c.33A>G synonymous_variant 1.0
ndh 2101920 c.1123A>C synonymous_variant 0.17
ndh 2101924 c.1119T>G synonymous_variant 0.2
ndh 2103173 c.-132delG upstream_gene_variant 1.0
katG 2154724 p.Arg463Leu missense_variant 1.0
katG 2154991 p.Ser374Asn missense_variant 0.17
katG 2154996 c.1116G>A synonymous_variant 0.16
katG 2155029 c.1083C>G synonymous_variant 0.17
katG 2155032 c.1080T>C synonymous_variant 0.17
katG 2155035 c.1077C>A synonymous_variant 0.17
katG 2155068 c.1044T>C synonymous_variant 0.2
katG 2155080 c.1032G>C synonymous_variant 0.22
katG 2155113 c.999C>G synonymous_variant 0.24
katG 2155119 c.993T>C synonymous_variant 0.25
katG 2155503 c.609C>T synonymous_variant 1.0
katG 2155680 c.432G>C synonymous_variant 0.18
katG 2155691 c.421T>C synonymous_variant 0.24
katG 2155695 c.417C>G synonymous_variant 0.18
katG 2155716 c.396T>G synonymous_variant 0.19
katG 2155740 p.Gly124Ala missense_variant 0.18
katG 2155806 c.306T>C synonymous_variant 0.19
katG 2156025 c.87C>A synonymous_variant 1.0
PPE35 2167926 p.Leu896Ser missense_variant 1.0
PPE35 2168011 p.Ser868Arg missense_variant 1.0
PPE35 2168319 p.Thr765Ile missense_variant 1.0
PPE35 2168814 c.1798dupA frameshift_variant 1.0
PPE35 2170190 c.423G>A synonymous_variant 0.22
Rv1979c 2222308 p.Asp286Gly missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2517941 c.-174C>G upstream_gene_variant 0.26
kasA 2518132 c.18C>T synonymous_variant 1.0
kasA 2518606 c.492G>C synonymous_variant 0.15
kasA 2518609 p.Met165Ile missense_variant 0.19
kasA 2518627 c.513T>C synonymous_variant 0.22
kasA 2518642 c.528A>G synonymous_variant 0.23
kasA 2518645 c.531G>C synonymous_variant 0.16
kasA 2518672 c.558G>C synonymous_variant 0.23
kasA 2518687 c.573C>T synonymous_variant 0.23
kasA 2518702 c.588C>T synonymous_variant 0.21
kasA 2518714 c.600A>C synonymous_variant 0.25
kasA 2518727 c.613C>T synonymous_variant 0.2
kasA 2518747 c.633C>G synonymous_variant 0.25
kasA 2518792 c.678C>G synonymous_variant 0.15
kasA 2518795 c.681C>G synonymous_variant 0.18
eis 2715125 p.Thr70Ala missense_variant 1.0
ahpC 2726366 c.174G>C synonymous_variant 0.25
ahpC 2726397 p.Ser69Gly missense_variant 0.15
thyX 3067391 c.555G>C synonymous_variant 0.17
thyX 3067394 c.552G>C synonymous_variant 0.18
thyX 3067412 c.534C>G synonymous_variant 0.16
thyX 3067531 p.Ala139Thr missense_variant 0.15
thyA 3073953 c.519T>C synonymous_variant 0.26
thyA 3073977 c.495A>G synonymous_variant 0.23
thyA 3073989 c.483T>C synonymous_variant 0.17
thyA 3074004 c.468T>C synonymous_variant 0.21
thyA 3074031 c.441T>C synonymous_variant 0.17
thyA 3074037 c.435C>G synonymous_variant 0.21
thyA 3074082 c.390G>C synonymous_variant 0.15
ald 3086728 c.-92C>T upstream_gene_variant 1.0
ald 3086788 c.-32T>C upstream_gene_variant 1.0
ald 3087084 c.266delA frameshift_variant 1.0
Rv3083 3448783 p.Val94Ile missense_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
fprA 3474427 p.Val141Ile missense_variant 1.0
fprA 3475159 p.Asn385Asp missense_variant 1.0
rpoA 3877587 c.921A>G synonymous_variant 0.19
rpoA 3877613 p.Ile299Val missense_variant 0.16
rpoA 3877638 c.870T>C synonymous_variant 0.18
rpoA 3877647 c.861C>T synonymous_variant 0.27
rpoA 3877656 c.852T>G synonymous_variant 0.21
rpoA 3877668 c.840A>G synonymous_variant 0.32
rpoA 3877671 c.837C>G synonymous_variant 0.18
rpoA 3877677 c.831G>C synonymous_variant 0.21
rpoA 3877680 c.828G>C synonymous_variant 0.3
rpoA 3877686 c.822A>G synonymous_variant 0.33
rpoA 3877692 c.816G>C synonymous_variant 0.26
rpoA 3877704 c.804G>T synonymous_variant 0.31
rpoA 3877743 c.765T>C synonymous_variant 0.32
rpoA 3877770 c.738A>G synonymous_variant 0.24
rpoA 3877776 c.732T>C synonymous_variant 0.22
rpoA 3877782 c.726T>C synonymous_variant 0.24
rpoA 3877818 c.690A>G synonymous_variant 0.29
rpoA 3877839 c.669G>C synonymous_variant 0.27
rpoA 3877848 c.660C>T synonymous_variant 0.22
rpoA 3877857 c.651G>A synonymous_variant 0.27
rpoA 3877875 c.633T>C synonymous_variant 0.25
rpoA 3877896 c.612G>C synonymous_variant 0.21
rpoA 3877900 p.Ser203Thr missense_variant 0.18
rpoA 3877905 c.603A>G synonymous_variant 0.28
rpoA 3877908 p.Asn200Ser missense_variant 0.3
rpoA 3877920 c.588G>C synonymous_variant 0.17
rpoA 3877923 c.585C>T synonymous_variant 0.29
rpoA 3877926 c.582G>C synonymous_variant 0.19
rpoA 3877962 c.546G>T synonymous_variant 0.33
rpoA 3877986 c.522G>C synonymous_variant 0.37
rpoA 3877989 c.519A>G synonymous_variant 0.37
rpoA 3878001 c.507A>G synonymous_variant 0.38
rpoA 3878019 c.489A>G synonymous_variant 0.21
rpoA 3878022 c.486T>C synonymous_variant 0.36
rpoA 3878028 c.480G>C synonymous_variant 0.32
rpoA 3878031 c.477T>C synonymous_variant 0.32
rpoA 3878034 c.474A>G synonymous_variant 0.21
rpoA 3878046 c.462T>C synonymous_variant 0.24
rpoA 3878050 p.Arg153Lys missense_variant 0.21
rpoA 3878055 c.453A>G synonymous_variant 0.25
rpoA 3878061 c.447G>C synonymous_variant 0.25
rpoA 3878064 c.444G>C synonymous_variant 0.22
rpoA 3878067 c.441C>G synonymous_variant 0.26
rpoA 3878070 c.438T>C synonymous_variant 0.27
rpoA 3878076 c.432C>T synonymous_variant 0.25
rpoA 3878082 c.426T>C synonymous_variant 0.3
rpoA 3878103 c.405A>G synonymous_variant 0.31
rpoA 3878106 c.402G>C synonymous_variant 0.32
rpoA 3878118 c.390T>C synonymous_variant 0.29
rpoA 3878127 c.381G>C synonymous_variant 0.25
rpoA 3878143 p.Gly122Asp missense_variant 0.24
rpoA 3878145 c.363C>G synonymous_variant 0.28
rpoA 3878157 c.351C>G synonymous_variant 0.26
rpoA 3878160 c.348C>G synonymous_variant 0.26
rpoA 3878166 c.342C>A synonymous_variant 0.29
rpoA 3878169 c.339G>C synonymous_variant 0.35
rpoA 3878175 c.333G>C synonymous_variant 0.3
rpoA 3878184 c.324C>T synonymous_variant 0.3
rpoA 3878193 c.315T>C synonymous_variant 0.33
rpoA 3878196 p.Glu104Val missense_variant 0.29
rpoA 3878202 c.306G>C synonymous_variant 0.29
rpoA 3878205 c.303T>C synonymous_variant 0.27
rpoA 3878217 c.291A>G synonymous_variant 0.28
rpoA 3878247 c.261G>C synonymous_variant 0.3
rpoA 3878256 c.252G>C synonymous_variant 0.24
rpoA 3878271 c.237T>C synonymous_variant 0.27
rpoA 3878292 c.216T>C synonymous_variant 0.2
rpoA 3878313 c.195G>C synonymous_variant 0.24
rpoA 3878322 c.186A>G synonymous_variant 0.27
rpoA 3878331 c.177A>G synonymous_variant 0.3
rpoA 3878337 c.171T>C synonymous_variant 0.33
rpoA 3878346 c.162T>C synonymous_variant 0.32
rpoA 3878364 c.144A>C synonymous_variant 0.23
rpoA 3878385 c.123C>G synonymous_variant 0.2
rpoA 3878436 c.72A>G synonymous_variant 0.22
rpoA 3878442 c.66G>C synonymous_variant 0.22
rpoA 3878472 p.Asp12Glu missense_variant 0.14
rpoA 3878630 c.-124delC upstream_gene_variant 1.0
clpC1 4038403 c.2302T>C synonymous_variant 1.0
clpC1 4038596 c.2109A>G synonymous_variant 0.2
clpC1 4038623 c.2082A>G synonymous_variant 0.21
clpC1 4038658 p.Lys683Gln missense_variant 0.22
clpC1 4038661 p.Ser682Thr missense_variant 0.19
clpC1 4038662 c.2043T>C synonymous_variant 0.19
clpC1 4038671 c.2034T>C synonymous_variant 0.17
clpC1 4038679 p.Pro676Ala missense_variant 0.17
clpC1 4038695 c.2010C>G synonymous_variant 0.16
clpC1 4038701 c.2004G>C synonymous_variant 0.21
clpC1 4038704 c.2001T>C synonymous_variant 0.25
clpC1 4038707 c.1998C>G synonymous_variant 0.22
clpC1 4038713 c.1992T>C synonymous_variant 0.22
clpC1 4038755 c.1950G>C synonymous_variant 0.21
clpC1 4038767 c.1938G>C synonymous_variant 0.17
clpC1 4038773 c.1932T>C synonymous_variant 0.24
clpC1 4038782 c.1923G>C synonymous_variant 0.25
clpC1 4038812 c.1893T>C synonymous_variant 0.24
clpC1 4038815 c.1890G>C synonymous_variant 0.25
clpC1 4038845 p.Ser620Thr missense_variant 0.21
clpC1 4038860 c.1845G>C synonymous_variant 0.25
clpC1 4038878 c.1827A>G synonymous_variant 0.3
clpC1 4038881 c.1824C>T synonymous_variant 0.25
clpC1 4038908 c.1797C>G synonymous_variant 0.28
clpC1 4038911 c.1794G>T synonymous_variant 0.21
clpC1 4038914 c.1791G>C synonymous_variant 0.25
clpC1 4038917 c.1788C>T synonymous_variant 0.22
clpC1 4038923 c.1782A>G synonymous_variant 0.26
clpC1 4038932 c.1773G>C synonymous_variant 0.23
clpC1 4038941 c.1764G>C synonymous_variant 0.24
clpC1 4038953 c.1752A>G synonymous_variant 0.3
clpC1 4038956 c.1749T>C synonymous_variant 0.32
clpC1 4038965 c.1740T>C synonymous_variant 0.29
clpC1 4038971 c.1734T>C synonymous_variant 0.29
clpC1 4038974 c.1731T>C synonymous_variant 0.29
clpC1 4038989 c.1716T>C synonymous_variant 0.29
clpC1 4038997 c.1708T>C synonymous_variant 0.3
clpC1 4039022 c.1683A>G synonymous_variant 0.27
clpC1 4039067 c.1638G>C synonymous_variant 0.23
clpC1 4039082 c.1623C>T synonymous_variant 0.23
clpC1 4039085 c.1620A>G synonymous_variant 0.3
clpC1 4039091 c.1614G>C synonymous_variant 0.2
clpC1 4039097 c.1608G>T synonymous_variant 0.23
clpC1 4039100 c.1605C>G synonymous_variant 0.21
clpC1 4039103 c.1602T>C synonymous_variant 0.27
clpC1 4039106 c.1599G>C synonymous_variant 0.26
clpC1 4039119 c.1585_1586delTCinsAG synonymous_variant 0.19
clpC1 4039121 c.1584T>C synonymous_variant 0.26
clpC1 4039124 c.1581C>G synonymous_variant 0.19
clpC1 4039142 c.1563A>G synonymous_variant 0.35
clpC1 4039145 c.1560G>C synonymous_variant 0.32
clpC1 4039169 c.1536A>G synonymous_variant 0.21
clpC1 4039172 c.1533A>G synonymous_variant 0.24
clpC1 4039178 c.1527G>C synonymous_variant 0.29
clpC1 4039183 c.1522T>C synonymous_variant 0.23
clpC1 4039190 c.1515C>T synonymous_variant 0.17
clpC1 4039200 p.Ala502Asp missense_variant 0.15
clpC1 4039208 c.1497C>G synonymous_variant 0.17
clpC1 4039274 c.1431G>C synonymous_variant 0.21
clpC1 4039289 c.1416T>C synonymous_variant 0.17
clpC1 4039298 c.1407T>C synonymous_variant 0.2
clpC1 4039319 c.1386T>C synonymous_variant 0.22
clpC1 4039322 c.1383T>C synonymous_variant 0.15
clpC1 4039328 c.1377A>G synonymous_variant 0.21
clpC1 4039334 c.1371G>C synonymous_variant 0.2
clpC1 4039337 p.Thr456Gln missense_variant 0.22
clpC1 4039382 c.1323C>G synonymous_variant 0.19
clpC1 4039391 c.1314T>G synonymous_variant 0.28
clpC1 4039394 c.1311G>C synonymous_variant 0.16
clpC1 4039397 c.1308A>G synonymous_variant 0.21
clpC1 4039409 c.1296T>C synonymous_variant 0.24
clpC1 4039412 c.1293T>G synonymous_variant 0.24
clpC1 4039415 p.Glu430Asp missense_variant 0.23
clpC1 4039430 c.1275T>C synonymous_variant 0.32
clpC1 4039439 c.1266C>T synonymous_variant 0.24
clpC1 4039442 c.1263A>G synonymous_variant 0.31
clpC1 4039448 c.1257A>G synonymous_variant 0.19
clpC1 4039454 c.1251A>G synonymous_variant 0.25
clpC1 4039463 c.1242C>G synonymous_variant 0.26
clpC1 4039466 c.1239T>C synonymous_variant 0.26
clpC1 4039469 c.1236T>C synonymous_variant 0.26
clpC1 4039481 c.1224T>C synonymous_variant 0.2
clpC1 4039484 c.1221T>C synonymous_variant 0.2
clpC1 4039487 c.1218G>C synonymous_variant 0.19
clpC1 4039517 c.1188C>G synonymous_variant 0.29
clpC1 4039556 c.1149G>C synonymous_variant 0.17
clpC1 4039559 c.1146C>G synonymous_variant 0.17
clpC1 4039562 c.1143C>G synonymous_variant 0.2
clpC1 4039574 p.Ala377Ser missense_variant 0.19
clpC1 4039577 c.1128T>C synonymous_variant 0.26
clpC1 4039589 c.1116G>C synonymous_variant 0.21
clpC1 4039592 c.1113G>C synonymous_variant 0.22
clpC1 4039610 c.1095G>T synonymous_variant 0.24
clpC1 4039616 c.1089G>C synonymous_variant 0.35
clpC1 4039622 c.1083C>T synonymous_variant 0.32
clpC1 4039649 c.1056G>C synonymous_variant 0.28
clpC1 4039652 c.1053G>C synonymous_variant 0.23
clpC1 4039661 c.1044T>C synonymous_variant 0.3
clpC1 4039682 c.1023C>G synonymous_variant 0.27
clpC1 4039694 c.1011G>C synonymous_variant 0.2
clpC1 4039724 c.981A>G synonymous_variant 0.35
clpC1 4039748 c.957G>C synonymous_variant 0.18
clpC1 4039751 c.954A>G synonymous_variant 0.26
clpC1 4039757 c.948A>G synonymous_variant 0.26
clpC1 4039760 c.945T>C synonymous_variant 0.26
clpC1 4039766 c.939T>C synonymous_variant 0.22
clpC1 4039769 c.936C>G synonymous_variant 0.26
clpC1 4039778 c.927A>G synonymous_variant 0.24
clpC1 4039787 c.916_918delTCGinsAGC synonymous_variant 0.19
clpC1 4039817 c.888A>T synonymous_variant 0.27
clpC1 4039820 c.885T>G synonymous_variant 0.23
clpC1 4039823 c.882T>C synonymous_variant 0.19
clpC1 4039831 c.874T>C synonymous_variant 0.3
clpC1 4039832 c.873C>G synonymous_variant 0.25
clpC1 4039850 c.855T>C synonymous_variant 0.38
clpC1 4039865 c.840T>C synonymous_variant 0.41
clpC1 4039931 c.774T>C synonymous_variant 0.32
clpC1 4039937 c.768G>C synonymous_variant 0.21
clpC1 4039946 c.759A>C synonymous_variant 0.19
clpC1 4039952 c.753T>C synonymous_variant 0.23
clpC1 4039958 c.747G>C synonymous_variant 0.2
clpC1 4039979 c.726C>G synonymous_variant 0.26
clpC1 4039991 c.714G>C synonymous_variant 0.17
clpC1 4040021 c.684A>C synonymous_variant 0.21
clpC1 4040024 c.681A>G synonymous_variant 0.24
clpC1 4040033 c.672G>C synonymous_variant 0.17
clpC1 4040090 c.613_615delTCTinsAGC synonymous_variant 0.25
clpC1 4040093 c.612C>G synonymous_variant 0.24
clpC1 4040144 c.561G>C synonymous_variant 0.18
clpC1 4040147 c.558A>G synonymous_variant 0.23
clpC1 4040153 c.552A>G synonymous_variant 0.24
clpC1 4040162 c.543G>C synonymous_variant 0.25
clpC1 4040168 c.537G>C synonymous_variant 0.26
clpC1 4040171 c.534C>G synonymous_variant 0.26
clpC1 4040249 c.456A>G synonymous_variant 0.18
clpC1 4040267 c.438A>G synonymous_variant 0.29
clpC1 4040273 c.432T>C synonymous_variant 0.24
clpC1 4040277 c.427_428delTCinsAG synonymous_variant 0.18
clpC1 4040309 c.396C>G synonymous_variant 0.21
clpC1 4040330 c.375C>G synonymous_variant 0.24
clpC1 4040333 c.372G>C synonymous_variant 0.22
clpC1 4040345 c.360C>G synonymous_variant 0.24
clpC1 4040348 c.357G>C synonymous_variant 0.24
clpC1 4040357 c.348T>C synonymous_variant 0.23
clpC1 4040363 c.342A>T synonymous_variant 0.27
clpC1 4040369 c.336C>G synonymous_variant 0.25
clpC1 4040375 c.330G>C synonymous_variant 0.2
clpC1 4040380 c.325T>C synonymous_variant 0.25
clpC1 4040381 c.324T>C synonymous_variant 0.25
clpC1 4040387 c.318A>G synonymous_variant 0.29
clpC1 4040393 c.312G>C synonymous_variant 0.24
clpC1 4040411 c.294T>C synonymous_variant 0.26
clpC1 4040417 c.288G>C synonymous_variant 0.21
clpC1 4040426 c.279T>C synonymous_variant 0.3
clpC1 4040431 c.274T>C synonymous_variant 0.3
clpC1 4040444 c.261C>G synonymous_variant 0.33
clpC1 4040450 c.255A>G synonymous_variant 0.33
clpC1 4040459 c.246C>T synonymous_variant 0.23
clpC1 4040462 c.243C>G synonymous_variant 0.2
clpC1 4040465 c.240T>C synonymous_variant 0.27
clpC1 4040471 c.234T>C synonymous_variant 0.29
clpC1 4040477 c.228G>C synonymous_variant 0.21
clpC1 4040480 c.225T>G synonymous_variant 0.25
clpC1 4040522 c.183T>C synonymous_variant 0.27
clpC1 4040528 c.177G>C synonymous_variant 0.27
clpC1 4040531 c.174T>C synonymous_variant 0.21
embC 4240671 p.Thr270Ile missense_variant 1.0
embC 4240717 c.855T>C synonymous_variant 0.2
embC 4240726 c.864G>C synonymous_variant 0.3
embC 4240735 c.873C>G synonymous_variant 0.18
embC 4240736 p.Ser292Ala missense_variant 0.23
embC 4240768 c.906G>T synonymous_variant 0.24
embC 4240780 c.918T>C synonymous_variant 0.37
embC 4240783 c.921G>C synonymous_variant 0.35
embC 4240789 c.927T>C synonymous_variant 0.35
embC 4240816 c.954C>T synonymous_variant 0.24
embC 4240819 c.957A>G synonymous_variant 0.29
embC 4240822 c.960C>T synonymous_variant 0.22
embC 4240826 p.Ala322Ser missense_variant 0.21
embC 4240831 c.969T>G synonymous_variant 0.29
embC 4242642 p.Arg927His missense_variant 1.0
embA 4242970 c.-263C>T upstream_gene_variant 1.0
embA 4244220 c.988C>T synonymous_variant 1.0
embA 4245784 p.Thr851Lys missense_variant 0.15
embB 4245807 c.-707_-705delTTAinsCTG upstream_gene_variant 0.2
embA 4245820 p.Ser863Thr missense_variant 0.19
embA 4245840 p.Val870Thr missense_variant 0.2
embB 4245845 c.-669T>C upstream_gene_variant 0.21
embA 4245846 p.Ser872Ala missense_variant 0.22
embB 4246292 c.-222A>G upstream_gene_variant 0.17
embB 4246316 c.-198T>G upstream_gene_variant 0.2
embA 4246330 p.Thr1033Ile missense_variant 0.14
embB 4246551 p.Asn13Ser missense_variant 1.0
embB 4246864 c.351C>T synonymous_variant 1.0
embB 4247646 p.Glu378Ala missense_variant 1.0
embB 4248133 c.1620C>G synonymous_variant 0.14
embB 4248143 c.1630T>C synonymous_variant 0.17
embB 4248206 p.Ser565Gly missense_variant 0.19
embB 4248734 p.Arg741Trp missense_variant 1.0
embB 4249381 c.2868A>G synonymous_variant 0.16
embB 4249450 c.2937C>T synonymous_variant 0.17
embB 4249456 c.2943G>C synonymous_variant 0.18
embB 4249486 c.2973T>C synonymous_variant 0.21
embB 4249507 p.Gln998His missense_variant 0.18
embB 4249520 p.Ala1003Arg missense_variant 0.18
embB 4249525 c.3012T>C synonymous_variant 0.18
embB 4249529 p.Ile1006Val missense_variant 0.24
embB 4249532 p.Ala1007Thr missense_variant 0.21
embB 4249537 c.3024A>G synonymous_variant 0.21
embB 4249558 c.3045A>G synonymous_variant 0.2
embB 4249567 c.3054C>T synonymous_variant 0.19
embB 4249573 c.3060T>C synonymous_variant 0.24
embB 4249594 c.3081G>C synonymous_variant 0.27
embB 4249598 p.Glu1029Gln missense_variant 0.29
embB 4249609 c.3096T>C synonymous_variant 0.24
embB 4249651 c.3138C>G synonymous_variant 0.17
embB 4249654 c.3141C>T synonymous_variant 0.19
embB 4249657 c.3144C>G synonymous_variant 0.19
embB 4249663 c.3150C>G synonymous_variant 0.19
embB 4249666 c.3153C>G synonymous_variant 0.19
aftB 4267167 p.Gln557Pro missense_variant 1.0
aftB 4267858 p.Ile327Val missense_variant 1.0
aftB 4269351 c.-515C>T upstream_gene_variant 1.0
ubiA 4269387 p.Glu149Asp missense_variant 1.0
aftB 4269606 c.-770T>C upstream_gene_variant 1.0
ethA 4326024 p.Pro484Ser missense_variant 1.0
ethR 4327420 c.-129G>A upstream_gene_variant 0.15
ethR 4327426 c.-123A>C upstream_gene_variant 0.15
ethR 4327429 c.-120G>C upstream_gene_variant 0.15
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0