Rv0668 - c.762T>C
Drug resistance types
85 Sensitive
27 RR-TB
134 HR-TB
72 MDR-TB
11 Pre-XDR-TB
3 XDR-TB
245 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.1;lineage4.1.1.1;lineage6.3 | 2 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 21 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| La1;lineage4.9 | 2 |
| lineage2.2.1 | 23 |
| La1.8.1 | 3 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 6 |
| lineage4.9 | 156 |
| M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| La1.2.BCG;lineage4.9 | 1 |
| 27 | |
| lineage4 | 7 |
| lineage4.9;lineage6.3 | 8 |
| lineage4.3.4.2.1 | 9 |
| M.canetti;lineage4.9 | 4 |
| lineage4.3.2 | 1 |
| lineage4.1.1.3 | 4 |
| lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 26 |
| lineage1.2.2.2 | 2 |
| lineage3 | 9 |
| lineage4.5 | 1 |
| La3;lineage4.9 | 17 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 4 |
| lineage4.4.1.1 | 4 |
| lineage5.2 | 3 |
| lineage2.1 | 5 |
| lineage2.2.2 | 4 |
| lineage4.1.3 | 2 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 3 |
| La3 | 2 |
| lineage2.1;lineage4.9;lineage6.3 | 10 |
| lineage4.9;lineage7 | 4 |
| lineage6.1.3 | 3 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 4 |
| lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | 1 |
| M.canetti;lineage4.2 | 1 |
| La1.7;lineage4.9 | 5 |
| lineage4.1.2.1 | 22 |
| M.canetti;lineage2.2 | 3 |
| La3;M.canetti;lineage2.1;lineage4.9 | 12 |
| lineage4.6.4;lineage4.9 | 1 |
| lineage4.1;lineage4.8 | 2 |
| lineage4.7 | 2 |
| lineage4.1 | 1 |
| M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | 1 |
| lineage4.3.4.1 | 2 |
| La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 2 |
| M.canetti;lineage4.6.4;lineage4.9 | 2 |
| lineage4.3.3 | 5 |
| lineage4.1.1.1 | 3 |
| La3;M.canetti;lineage4.8;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | 2 |
| lineage4.8 | 8 |
| lineage4.4.1.1.1 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La3;lineage2.1;lineage4.9 | 3 |
| La3;lineage4 | 1 |
| La3;lineage2 | 1 |
| lineage6.3.1 | 1 |
| M.canetti;lineage2.1;lineage4 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| La2;lineage2.2 | 1 |
| lineage2.2 | 4 |
| lineage1.1.2 | 1 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| lineage3.1.2.1 | 1 |
| lineage2.1;lineage6.3 | 2 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| lineage4.9;lineage9 | 1 |
| M.canetti;lineage2.1;lineage4.1.2.1 | 1 |
| lineage4.6.2.2 | 5 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| La1;lineage4.1.2 | 1 |
| lineage4.3.4.2 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 2 |
| lineage2.2.1;lineage4.1.2.1 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 | 1 |
| lineage3.1 | 1 |
| lineage1.2.1.2.1 | 1 |
| lineage2.1;lineage2.2;lineage6.3 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| La1.7;lineage4.2 | 1 |
| La1.2.BCG | 1 |
| La3;M.canetti;lineage3.1 | 1 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage1.1.1 | 1 |
| lineage2.2.2;lineage4 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 5 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| La1.7;M.canetti;lineage4.9 | 3 |
| lineage1.2.1.2 | 1 |
| La1.7.1 | 2 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| La3;M.canetti;lineage4.9 | 2 |
| La3;lineage4.8 | 2 |
| lineage2.1;lineage4.3.2 | 1 |
| lineage4.9.1 | 1 |
| La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| La3;lineage1.1.2 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1;lineage3;lineage4 | 1 |
| lineage4.1.2.1.1 | 1 |
| La3;lineage2.2.1 | 2 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage2.2.1.1 | 1 |
| lineage2.2.1;lineage4.9 | 2 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | 1 |
| lineage1.1 | 1 |
| M.canetti;lineage2.1 | 1 |
| M.canetti;lineage2.1;lineage3 | 1 |
| lineage4.6.3;lineage4.9 | 2 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| lineage4.1.2 | 2 |
| La3;lineage2.1;lineage6.3 | 1 |
| lineage4.6.1.1 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage2;lineage4.9 | 1 |
| La3;M.canetti;lineage2.1;lineage3.1 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| La2;lineage4.9 | 1 |
| lineage1.1.2;lineage4 | 1 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage1 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage3.1.1 | 1 |
| lineage4.3.2.1 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | 1 |
| La3;lineage2.2.2 | 1 |
| lineage2.2.1;lineage3 | 1 |
| lineage2.2.1;lineage6.3 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.3.1;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 577 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6325447 | MDR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | SRR10808805 | Other | La1;lineage4.9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR1791696 | Other | La1.8.1 | None | SRR3675481 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6044942 | HR-TB | lineage4.9 | None | ERR1035162 | Other | M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | SRR1915481 | Other | La1.2.BCG;lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | SRR6785263 | Sensitive | lineage2.2.1 | None | SRR3675236 | Other | None | ERR3273109 | HR-TB | lineage4 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR926163 | Other | lineage4.9 | None | ERR11465509 | Sensitive | lineage4.3.4.2.1 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR2229143 | RR-TB | lineage4.9 | None | ERR11466044 | Other | lineage4.1.1.3 | None | SRR3675464 | HR-TB | lineage2.1;lineage4.9;lineage6.3;lineage8 | None | ERR11465025 | Other | lineage4.1.1.3 | None | SRR1165699 | Other | lineage4.9 | None | SRR1181349 | Sensitive | lineage4 | None | ERR4819877 | HR-TB | lineage4.9 | None | SRR6045948 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4797201 | Other | lineage1.2.2.2 | None | SRR7535086 | Other | None | ERR3797073 | Other | La1.8.1 | None | ERR4817731 | HR-TB | lineage4.9 | None | ERR4800341 | Other | lineage3 | None | SRR13423544 | Other | lineage4.5 | None | ERR1035122 | Sensitive | lineage4.9 | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | SRR3675518 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR1173767 | MDR-TB | lineage4.4.1.1 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR702406 | Other | lineage2.1 | None | ERR1023509 | Other | lineage4.9 | None | SRR6046594 | Sensitive | lineage4.9 | None | ERR4816656 | Other | lineage4.9 | None | SRR069989 | HR-TB | lineage2.2.2 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR3675549 | Other | lineage4.9 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR6046824 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR1172817 | Other | La3 | None | SRR1173400 | Other | lineage4.9 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR12416840 | MDR-TB | lineage4.9 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | ERR1023236 | Other | lineage6.1.3 | None | SRR3675494 | RR-TB | lineage4.9 | None | SRR29017461 | Other | La3;lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR1180413 | Sensitive | lineage4.9 | None | ERR6358991 | HR-TB | lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR403298 | MDR-TB | M.canetti;lineage4.2 | None | ERR386953 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675383 | Sensitive | lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786843 | Other | None | SRR3675390 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR3675221 | Other | lineage4.9 | None | SRR6325448 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR1173118 | Other | lineage2.2.1 | None | ERR212033 | Other | lineage4.9 | None | SRR28119805 | Other | lineage4.9 | None | ERR4817060 | Other | None | ERR234659 | Other | None | ERR4769442 | Sensitive | lineage4.9 | None | ERR473314 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR3675487 | Other | M.canetti;lineage4.9 | None | ERR323047 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR4188322 | Other | lineage4.6.4;lineage4.9 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR4819781 | Other | lineage2.2.1 | None | ERR9786525 | Other | lineage4.1;lineage4.8 | None | SRR7496523 | Other | lineage4.7 | None | ERR9786440 | Other | lineage4.1 | None | SRR3675558 | HR-TB | M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | None | SRR1173363 | Other | None | ERR5311098 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR6326069 | Pre-XDR-TB | lineage4.3.4.1 | None | ERR6358837 | HR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR6866807 | Other | lineage4.9 | None | ERR3439432 | Other | M.canetti;lineage4.6.4;lineage4.9 | None | SRR1196566 | Other | lineage4.9 | None | ERR3797016 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR21732980 | Other | lineage4.3.3 | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | SRR6045832 | Other | lineage4.9 | None | ERR038268 | HR-TB | La3;M.canetti;lineage4.8;lineage4.9 | None | ERR3283042 | Other | lineage4.9 | None | ERR4407463 | HR-TB | None | ERR4798823 | HR-TB | lineage4 | None | ERR4819241 | Other | lineage4.9 | None | ERR176658 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675322 | HR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | SRR26399239 | Sensitive | lineage4.9 | None | ERR4188342 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675275 | Other | lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | ERR323063 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | SRR6044875 | Sensitive | lineage4.9 | None | ERR067681 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR069978 | HR-TB | lineage2.2.2 | None | ERR323058 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR387051 | Other | lineage4.9 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | ERR2693242 | RR-TB | lineage2.1;lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | ERR3283028 | Other | La3;lineage4 | None | ERR161034 | HR-TB | lineage4.3.4.2.1 | None | SRR1173788 | Sensitive | lineage4.9 | None | SRR20969677 | HR-TB | La3;lineage2 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR2693239 | RR-TB | M.canetti;lineage2.1;lineage4 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR3675214 | Other | lineage4.9 | None | SRR3675506 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | ERR4817735 | Other | lineage4.8 | None | SRR1180444 | Sensitive | lineage4.9 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | SRR1183049 | RR-TB | lineage2.2 | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | ERR5311081 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR28044916 | Sensitive | lineage3.1.2.1 | None | SRR1172844 | Sensitive | lineage4.9 | None | ERR9786682 | Other | lineage4.1.2.1 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | ERR5162090 | RR-TB | lineage4.9 | None | ERR4820773 | HR-TB | lineage4.9 | None | ERR323036 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | ERR124642 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | SRR1196677 | Other | lineage2.2 | None | ERR13267017 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR5311082 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | SRR3675561 | Other | M.canetti;lineage2.1;lineage4.9 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | ERR278594 | HR-TB | lineage2.1;lineage4.9 | None | ERR1023295 | MDR-TB | M.canetti;lineage2.1;lineage4.1.2.1 | None | ERR5311089 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | ERR4596902 | MDR-TB | lineage3 | None | ERR926159 | Sensitive | lineage4.9 | None | SRR069981 | HR-TB | lineage2.2.2 | None | SRR1180977 | Sensitive | lineage4.9 | None | ERR990545 | Other | lineage3 | None | ERR4188350 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR971389 | Sensitive | lineage4.9 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | SRR28119777 | Other | lineage4.9 | None | ERR176643 | Other | La3;lineage4.9 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR5311099 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | ERR9117709 | Other | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR3675450 | HR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR11466499 | Other | lineage4.3.4.1 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR1172234 | Other | lineage4.9 | None | ERR473332 | Other | lineage4.9 | None | SRR9970978 | Sensitive | La1;lineage4.1.2 | None | ERR323055 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | ERR9787153 | Other | lineage6.1.3 | None | ERR9786346 | Sensitive | lineage4.3.4.2 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR2229542 | Other | lineage4.8 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | SRR1165423 | RR-TB | lineage4.1.2.1 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | ERR5311096 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR29050859 | Other | lineage4.9 | None | ERR5311102 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR11488822 | Pre-XDR-TB | lineage2.2.1;lineage4.1.2.1 | None | ERR3283017 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1510066 | RR-TB | lineage1.2.1.2.1 | None | ERR8976043 | HR-TB | lineage2.1;lineage2.2;lineage6.3 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | SRR5341418 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675311 | Other | lineage4.9 | None | ERR5908228 | RR-TB | lineage4.3.3 | None | ERR7821163 | Other | lineage2.2.1 | None | SRR26399265 | Other | lineage2.2.1 | None | ERR1873393 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6046485 | Other | lineage4.9 | None | ERR4798262 | HR-TB | La1.2.BCG | None | ERR323054 | MDR-TB | La3;M.canetti;lineage3.1 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | ERR11252548 | Other | lineage1.2.2.2 | None | SRR1184381 | MDR-TB | None | ERR11252664 | Other | lineage2.2.1 | None | ERR11252612 | Other | La3;lineage4.9 | None | ERR11465024 | Other | lineage4.1.1.3 | None | SRR29093105 | Other | lineage2.2.2;lineage4 | None | ERR124652 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR126600 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR181824 | HR-TB | lineage4.9 | None | ERR502908 | HR-TB | lineage2.2.1 | None | ERR502889 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | SRR1162864 | Other | lineage4.1.2.1 | None | SRR12142341 | HR-TB | lineage2.1 | None | SRR6044815 | Other | lineage4.9 | None | ERR12268496 | Sensitive | lineage4.4.1.1 | None | SRR29231479 | RR-TB | lineage4.9 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR3470647 | Other | lineage3 | None | ERR4819422 | HR-TB | lineage4.9 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | SRR1184372 | MDR-TB | None | SRR12006550 | Sensitive | lineage1.2.1.2 | None | SRR6045555 | Other | lineage4.9 | None | SRR7240492 | HR-TB | La1.7.1 | None | ERR926165 | Sensitive | lineage4.9 | None | ERR9786604 | Other | None | SRR3675243 | Other | lineage4.9 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR1167384 | Other | La3;lineage4.9 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | SRR1640750 | Other | None | SRR3675572 | Other | None | SRR3675545 | Other | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675568 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | None | SRR3675457 | Other | lineage4.9 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | SRR3675444 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | SRR6045952 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9787165 | Other | lineage6.1.3 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR926157 | Sensitive | lineage4.9 | None | SRR1172951 | Other | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | ERR4818929 | HR-TB | lineage4.9 | None | ERR4769444 | HR-TB | lineage4.9 | None | SRR3675508 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1196583 | Other | lineage4.9 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | ERR2693229 | RR-TB | La3;M.canetti;lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4810624 | MDR-TB | lineage2.2 | None | ERR4817893 | Other | La3;lineage4.8 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | ERR5311083 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR18003019 | Other | lineage2.2.1 | None | ERR772255 | MDR-TB | lineage2.1;lineage4.3.2 | None | ERR245758 | Other | lineage4.9.1 | None | SRR26399973 | Other | La3;lineage4.9 | None | ERR9119669 | HR-TB | lineage4.9 | None | ERR4819932 | Other | lineage4.7 | None | SRR1173355 | Other | lineage4.9 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR124651 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | SRR3416776 | Other | lineage2.1 | None | ERR3797083 | RR-TB | lineage4.9 | None | ERR9117721 | HR-TB | La3;lineage1.1.2 | None | SRR1792478 | HR-TB | La1.7.1 | None | ERR4821053 | RR-TB | lineage3 | None | SRR1169194 | Other | lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | SRR3675550 | RR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR4815441 | HR-TB | lineage4.9 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | ERR3283021 | HR-TB | lineage4.9 | None | SRR3675515 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3283044 | Other | lineage4 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR323037 | Other | lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR13285191 | Sensitive | lineage4.9 | None | ERR11081258 | Other | lineage4.8 | None | SRR13861528 | HR-TB | lineage4.9 | None | SRR6045290 | RR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR11049020 | Other | lineage4.8 | None | ERR126618 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR25827605 | Pre-XDR-TB | lineage2.2.1;lineage3;lineage4 | None | ERR4816478 | HR-TB | lineage4 | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR926154 | Sensitive | lineage4.9 | None | SRR1172728 | RR-TB | La3 | None | ERR176766 | HR-TB | lineage2.1;lineage4.9 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR7496509 | Other | None | ERR176751 | Other | lineage4.9 | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | ERR12015083 | Other | La3;lineage4.8 | None | SRR26937071 | MDR-TB | La3;lineage2.2.1 | None | SRR1180399 | Sensitive | lineage4.9 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR4799513 | HR-TB | lineage2.2 | None | SAMN02414850 | Other | lineage4.1.2.1 | None | SRR21732954 | Sensitive | lineage4.9 | None | SRR13861332 | Other | lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR7496472 | Other | lineage4.9 | None | SRR1184294 | Other | lineage4.9 | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | SRR13861305 | Other | lineage4.9 | None | SRR3675320 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | None | ERR5311090 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR323033 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR3077978 | RR-TB | lineage1.1 | None | SRR3675312 | Sensitive | lineage4.9 | None | ERR323041 | HR-TB | M.canetti;lineage2.1 | None | ERR323038 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR3509850 | MDR-TB | lineage4.3.4.2.1 | None | ERR3804155 | Other | lineage4.1.2.1 | None | SRR29231548 | MDR-TB | lineage5.2 | None | SRR6045233 | Other | M.canetti;lineage4.9 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR4814536 | MDR-TB | M.canetti;lineage2.1;lineage3 | None | ERR3797070 | Other | lineage4.9 | None | ERR736831 | Other | lineage4.9 | None | SRR1165584 | Other | lineage4.1.2.1 | None | ERR11465510 | Sensitive | lineage4.3.4.2.1 | None | ERR9119096 | RR-TB | lineage4.3.3 | None | ERR11465333 | Sensitive | lineage4.3.4.2.1 | None | SRR1181402 | Sensitive | lineage4.9 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | SRR28351488 | MDR-TB | lineage2.2.1 | None | SRR3675554 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR28044634 | Other | lineage3 | None | ERR2514692 | Other | None | SRR25827682 | Other | None | SRR28351339 | MDR-TB | lineage4 | None | ERR212001 | HR-TB | None | SRR1172857 | Other | None | ERR9787197 | Other | None | SRR6325442 | HR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | SRR6789621 | Other | lineage4.9 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | SRR28119752 | Other | lineage4.9 | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR4814352 | Other | lineage2.2.1 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR926156 | Sensitive | lineage4.9 | None | ERR9786076 | Sensitive | lineage3 | None | ERR9786421 | Other | lineage4.1.2.1 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1180312 | Sensitive | lineage4.9 | None | ERR13285192 | Sensitive | lineage4.9 | None | ERR133986 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | ERR2693252 | Sensitive | lineage4.9 | None | SRR6045217 | Sensitive | lineage4.9 | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR323060 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | ERR4818347 | Other | lineage4.1.2 | None | SRR1175513 | Sensitive | lineage4.9 | None | ERR4818615 | Sensitive | None | SRR1180410 | Sensitive | lineage4.9 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | SRR3675586 | Other | M.canetti;lineage4.6.4;lineage4.9 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | SRR29050928 | Other | lineage4.9 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR13861510 | Other | lineage4.9 | None | SRR1173778 | Other | lineage4.9 | None | SRR1196768 | MDR-TB | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR1180406 | Sensitive | lineage4.9 | None | ERR3468607 | Other | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | SRR1165506 | Other | lineage4.1.2.1 | None | ERR1035239 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675507 | Other | lineage4.9 | None | ERR11252736 | Other | lineage4.9 | None | ERR6358755 | Other | lineage4.6.1.1 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR18213713 | HR-TB | None | ERR2514327 | HR-TB | lineage4.8 | None | SRR1180345 | Other | lineage4.9 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR6046514 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR1710057 | Other | lineage2.1 | None | SRR29055629 | MDR-TB | La3;lineage2.2.1 | None | SRR1180300 | Sensitive | lineage4.9 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR294248 | MDR-TB | lineage2.1;lineage4.9 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR5311079 | Other | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | ERR323034 | MDR-TB | La3;M.canetti;lineage2.1;lineage3.1 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | SRR7496517 | Other | None | ERR12015086 | RR-TB | lineage4.8 | None | ERR5311100 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | ERR6358979 | Other | lineage4.9 | None | ERR5311101 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | SRR6325445 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR176741 | Other | lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | ERR323115 | Sensitive | lineage4.9 | None | SRR3675446 | RR-TB | lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | SRR1184312 | Other | lineage2.2.1 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR2027263 | Other | lineage4 | None | ERR2446566 | Other | lineage4.9 | None | ERR9786526 | Other | lineage4.1;lineage4.8 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | ERR1063855 | Other | lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | SRR1169306 | Other | La3;lineage4.9 | None | ERR4816999 | Other | None | SRR26159043 | Other | lineage4.9 | None | ERR4817692 | HR-TB | lineage1.1.2;lineage4 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | SRR29016901 | Other | La3;lineage4.9 | None | SRR6789626 | Other | None | ERR9786617 | Other | lineage4.1.1.1 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR3675248 | Other | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR3797085 | Other | lineage4.9 | None | ERR9786515 | Other | lineage4.1.2.1 | None | SRR1196474 | Other | lineage3.1.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR1196546 | Other | lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | SRR1163221 | MDR-TB | lineage4.1.2.1 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR126608 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR5311103 | RR-TB | La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | SRR3675269 | RR-TB | lineage4.9 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | ERR11466146 | Other | lineage4.3.4.2.1 | None | ERR13245558 | MDR-TB | La3;lineage2.2.2 | None | ERR6359066 | HR-TB | lineage4.9 | None | SRR15368973 | Other | lineage4.9 | None | ERR4815604 | Other | None | SRR3675486 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR736856 | Sensitive | lineage4.9 | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | SRR18910194 | HR-TB | lineage2.2.2 | None | ERR1063883 | HR-TB | lineage4.9 | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR1180420 | Sensitive | lineage4.9 | None | ERR3468544 | Other | lineage2.1;lineage4.9 | None | SRR28119811 | Other | lineage2.2.1;lineage6.3 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR6359069 | Sensitive | lineage4.9 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR3283016 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR3675582 | Other | lineage4.9 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR9896144 | Other | lineage3 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR6045548 | Sensitive | lineage4.9 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR1165628 | Other | La3;lineage4.9 | None | ERR323040 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR6045526 | Other | lineage4.9 | None | ERR1873396 | Pre-XDR-TB | M.canetti;lineage2.2 | None | SRR1175487 | Sensitive | lineage4.9 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR9786444 | Sensitive | lineage4.8 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR5311078 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | ERR323064 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR29051077 | Other | lineage4.9 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR161033 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | ERR9119138 | RR-TB | M.canetti;lineage4.3.1;lineage4.9 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None |
|---|
