SRR29093105
|
Other
|
lineage2.2.2;lineage4
|
None
|
ERR126600
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR181824
|
HR-TB
|
lineage4.9
|
None
|
ERR502908
|
HR-TB
|
lineage2.2.1
|
None
|
ERR502889
|
Other
|
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9
|
None
|
ERR9786601
|
Other
|
lineage4.1.2.1
|
None
|
ERR9786671
|
Other
|
|
None
|
SRR12142341
|
HR-TB
|
lineage2.1
|
None
|
ERR176549
|
Other
|
lineage4.3.4.2.1
|
None
|
ERR3801503
|
Sensitive
|
lineage4.6.2.2
|
None
|
ERR9786421
|
Other
|
lineage4.1.2.1
|
None
|
SRR3675539
|
HR-TB
|
lineage4.9;lineage7
|
None
|
SRR3675487
|
Other
|
M.canetti;lineage4.9
|
None
|
ERR323047
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR3445502
|
Sensitive
|
lineage4.9;lineage7
|
None
|
ERR4819422
|
HR-TB
|
lineage4.9
|
None
|
SRR7240492
|
HR-TB
|
La1.7.1
|
None
|
SRR7496523
|
Other
|
lineage4.7
|
None
|
SRR1173453
|
Other
|
lineage4.4.1.1
|
None
|
SRR1180312
|
Sensitive
|
lineage4.9
|
None
|
ERR9786604
|
Other
|
|
None
|
SRR1167384
|
Other
|
La3;lineage4.9
|
None
|
SRR6046382
|
Sensitive
|
lineage2.2.1
|
None
|
SRR3675568
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8
|
None
|
ERR4831545
|
XDR-TB
|
M.canetti;lineage2.2
|
None
|
ERR13285192
|
Sensitive
|
lineage4.9
|
None
|
SRR6046141
|
Other
|
lineage4.9
|
None
|
ERR13265528
|
Other
|
lineage4.9;lineage6.3
|
None
|
ERR6866807
|
Other
|
lineage4.9
|
None
|
ERR3797016
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR21732980
|
Other
|
lineage4.3.3
|
None
|
SRR25827507
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR3675586
|
Other
|
M.canetti;lineage4.6.4;lineage4.9
|
None
|
ERR3797023
|
HR-TB
|
La1.8.1
|
None
|
ERR9786694
|
Other
|
lineage4.1.2.1
|
None
|
SRR1180137
|
Other
|
lineage2.2.1
|
None
|
SRR1175506
|
Sensitive
|
lineage4.9
|
None
|
ERR3283027
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR4818021
|
Other
|
La1.2.BCG;La1.8.1
|
None
|
SRR19304036
|
Other
|
La3;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR3675322
|
HR-TB
|
M.canetti;lineage2.1;lineage4.1.4;lineage4.9
|
None
|
ERR9786569
|
Other
|
lineage4.8
|
None
|
SRR26399239
|
Sensitive
|
lineage4.9
|
None
|
SRR3675508
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR1180406
|
Sensitive
|
lineage4.9
|
None
|
ERR3468607
|
Other
|
lineage4.9
|
None
|
ERR2693229
|
RR-TB
|
La3;M.canetti;lineage4.9
|
None
|
ERR4810741
|
HR-TB
|
La3;lineage2.1;lineage6.3
|
None
|
SRR1165506
|
Other
|
lineage4.1.2.1
|
None
|
SRR3675507
|
Other
|
lineage4.9
|
None
|
SRR18213713
|
HR-TB
|
|
None
|
SRR28119717
|
Other
|
lineage4.9;lineage6.3
|
None
|
ERR067681
|
MDR-TB
|
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9
|
None
|
SRR069978
|
HR-TB
|
lineage2.2.2
|
None
|
ERR323058
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR387051
|
Other
|
lineage4.9
|
None
|
SRR1180345
|
Other
|
lineage4.9
|
None
|
ERR3283019
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR3283028
|
Other
|
La3;lineage4
|
None
|
SRR6046460
|
MDR-TB
|
La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9
|
None
|
SRR1173788
|
Sensitive
|
lineage4.9
|
None
|
SRR20969677
|
HR-TB
|
La3;lineage2
|
None
|
ERR9787139
|
Other
|
lineage6.3.1
|
None
|
ERR3283026
|
HR-TB
|
lineage4.2;lineage4.6.3;lineage4.9.1
|
None
|
SRR1710057
|
Other
|
lineage2.1
|
None
|
SRR29055629
|
MDR-TB
|
La3;lineage2.2.1
|
None
|
SRR1180300
|
Sensitive
|
lineage4.9
|
None
|
ERR4811075
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR4831546
|
HR-TB
|
M.canetti;lineage2.2.2;lineage6.2
|
None
|
SRR1184388
|
Other
|
lineage2.1;lineage4.9
|
None
|
SRR3675214
|
Other
|
lineage4.9
|
None
|
SRR3675506
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR11662696
|
MDR-TB
|
La1.6;La3;M.canetti;lineage4.2.2
|
None
|
ERR5311079
|
Other
|
La1.6;La3;M.canetti;lineage4.2;lineage4.9
|
None
|
SRR28044916
|
Sensitive
|
lineage3.1.2.1
|
None
|
SRR1172844
|
Sensitive
|
lineage4.9
|
None
|
ERR9786682
|
Other
|
lineage4.1.2.1
|
None
|
SRR19303884
|
Other
|
lineage2.1;lineage6.3
|
None
|
ERR3797083
|
RR-TB
|
lineage4.9
|
None
|
SRR1792478
|
HR-TB
|
La1.7.1
|
None
|
SRR9970980
|
HR-TB
|
lineage4.1.2
|
None
|
ERR473277
|
HR-TB
|
La3;M.canetti;lineage4.9
|
None
|
SRR6046577
|
Other
|
lineage4.6.3;lineage4.9
|
None
|
ERR6358979
|
Other
|
lineage4.9
|
None
|
SRR3675550
|
RR-TB
|
M.canetti;lineage4.2;lineage4.9
|
None
|
SRR3675231
|
MDR-TB
|
lineage4.9;lineage7
|
None
|
SRR1162740
|
Other
|
lineage4.1.2.1
|
None
|
SRR6045548
|
Sensitive
|
lineage4.9
|
None
|
ERR926162
|
Sensitive
|
lineage4.9
|
None
|
ERR176741
|
Other
|
lineage4.9
|
None
|
ERR5311103
|
RR-TB
|
La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9
|
None
|
ERR176518
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
ERR13245558
|
MDR-TB
|
La3;lineage2.2.2
|
None
|
SRR3675467
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR3675446
|
RR-TB
|
lineage4.9
|
None
|
ERR6359066
|
HR-TB
|
lineage4.9
|
None
|
SRR6045526
|
Other
|
lineage4.9
|
None
|
SRR1175487
|
Sensitive
|
lineage4.9
|
None
|
SRR3675486
|
HR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
ERR9786444
|
Sensitive
|
lineage4.8
|
None
|
ERR736856
|
Sensitive
|
lineage4.9
|
None
|
SRR25827497
|
XDR-TB
|
lineage2.2.1;lineage3
|
None
|
SRR18910194
|
HR-TB
|
lineage2.2.2
|
None
|
ERR3283031
|
Sensitive
|
La3;lineage4.9
|
None
|
ERR1063855
|
Other
|
lineage4.9
|
None
|
SRR1169306
|
Other
|
La3;lineage4.9
|
None
|
ERR1063883
|
HR-TB
|
lineage4.9
|
None
|
ERR3468544
|
Other
|
lineage2.1;lineage4.9
|
None
|
SRR28119811
|
Other
|
lineage2.2.1;lineage6.3
|
None
|
ERR5311078
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR323064
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR26159043
|
Other
|
lineage4.9
|
None
|
SRR6046482
|
Other
|
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3
|
None
|
SRR29051077
|
Other
|
lineage4.9
|
None
|
ERR4799478
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6789626
|
Other
|
|
None
|
ERR3797063
|
Sensitive
|
La3;lineage4.9
|
None
|
ERR926158
|
Sensitive
|
lineage4.9
|
None
|
ERR9119138
|
RR-TB
|
M.canetti;lineage4.3.1;lineage4.9
|
None
|
ERR1873492
|
HR-TB
|
M.canetti;lineage2.2.2;lineage6.2
|
None
|
SRR3675582
|
Other
|
lineage4.9
|
None
|
SRR9970981
|
RR-TB
|
lineage4.3.2.1
|
None
|
SRR1196546
|
Other
|
lineage4.9
|
None
|
SRR6046720
|
HR-TB
|
lineage4.9;lineage9
|
None
|
ERR4820854
|
Other
|
lineage4.1.2.1
|
None
|
SRR6046644
|
HR-TB
|
La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3
|
None
|
SRR10808805
|
Other
|
La1;lineage4.9
|
None
|
SRR6458423
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4815441
|
HR-TB
|
lineage4.9
|
None
|
ERR1035162
|
Other
|
M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9
|
None
|
ERR1063862
|
HR-TB
|
lineage4.9
|
None
|
SRR5709967
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11465509
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
ERR1023525
|
HR-TB
|
La1.7;lineage4.9
|
None
|
ERR9117805
|
Other
|
lineage4.3.2
|
None
|
ERR1023295
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.1.2.1
|
None
|
ERR3283021
|
HR-TB
|
lineage4.9
|
None
|
ERR4596902
|
MDR-TB
|
lineage3
|
None
|
ERR990545
|
Other
|
lineage3
|
None
|
ERR3804169
|
HR-TB
|
lineage4.1.3
|
None
|
SRR13861528
|
HR-TB
|
lineage4.9
|
None
|
ERR126618
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR7535086
|
Other
|
|
None
|
ERR4817731
|
HR-TB
|
lineage4.9
|
None
|
SRR13423544
|
Other
|
lineage4.5
|
None
|
SRR6325444
|
MDR-TB
|
M.canetti;lineage2.1;lineage6.3
|
None
|
SRR1172728
|
RR-TB
|
La3
|
None
|
ERR3797064
|
Other
|
La3;lineage4.9
|
None
|
SRR1173767
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR176643
|
Other
|
La3;lineage4.9
|
None
|
ERR736859
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR158583
|
MDR-TB
|
La3;M.canetti;lineage2;lineage4.2;lineage4.3
|
None
|
SRR6046594
|
Sensitive
|
lineage4.9
|
None
|
ERR1063849
|
HR-TB
|
lineage4.9
|
None
|
ERR926164
|
Other
|
lineage4.9
|
None
|
ERR9117709
|
Other
|
|
None
|
ERR5336148
|
Other
|
lineage2.1;lineage6.3
|
None
|
SRR6046824
|
MDR-TB
|
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9
|
None
|
ERR3445501
|
HR-TB
|
La1.7.1;La1.7.X-unk4;lineage7
|
None
|
SRR3675450
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
SRR9970978
|
Sensitive
|
La1;lineage4.1.2
|
None
|
ERR176751
|
Other
|
lineage4.9
|
None
|
SRR1196571
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR736867
|
Other
|
lineage2.1;lineage4.9
|
None
|
SRR12416840
|
MDR-TB
|
lineage4.9
|
None
|
ERR13265748
|
Other
|
lineage4.9;lineage6.3
|
None
|
SRR3675456
|
RR-TB
|
lineage4.9;lineage7
|
None
|
ERR926156
|
Sensitive
|
lineage4.9
|
None
|
ERR9786076
|
Sensitive
|
lineage3
|
None
|
SRR1180355
|
Sensitive
|
lineage4.9
|
None
|
SRR19295647
|
Sensitive
|
lineage4.9
|
None
|
ERR12268496
|
Sensitive
|
lineage4.4.1.1
|
None
|
SRR29231479
|
RR-TB
|
lineage4.9
|
None
|
ERR3470647
|
Other
|
lineage3
|
None
|
ERR4188322
|
Other
|
lineage4.6.4;lineage4.9
|
None
|
ERR4819781
|
Other
|
lineage2.2.1
|
None
|
ERR9786525
|
Other
|
lineage4.1;lineage4.8
|
None
|
SRR1184372
|
MDR-TB
|
|
None
|
SRR12006550
|
Sensitive
|
lineage1.2.1.2
|
None
|
SRR6045555
|
Other
|
lineage4.9
|
None
|
SRR3675558
|
HR-TB
|
M.canetti;lineage4.1.1.3;lineage6.3;lineage8
|
None
|
SRR1165667
|
Other
|
lineage4.9;lineage6.3
|
None
|
SRR1640750
|
Other
|
|
None
|
SRR6045380
|
Other
|
lineage2.1;lineage4.9
|
None
|
SRR3675444
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR133986
|
Other
|
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7
|
None
|
ERR2693252
|
Sensitive
|
lineage4.9
|
None
|
SRR6045217
|
Sensitive
|
lineage4.9
|
None
|
ERR4818347
|
Other
|
lineage4.1.2
|
None
|
SRR1175513
|
Sensitive
|
lineage4.9
|
None
|
ERR4818615
|
Sensitive
|
|
None
|
ERR3439432
|
Other
|
M.canetti;lineage4.6.4;lineage4.9
|
None
|
SRR3675465
|
Other
|
lineage4.9;lineage6.3
|
None
|
SRR6045242
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR038268
|
HR-TB
|
La3;M.canetti;lineage4.8;lineage4.9
|
None
|
ERR3283042
|
Other
|
lineage4.9
|
None
|
ERR4798823
|
HR-TB
|
lineage4
|
None
|
ERR4819241
|
Other
|
lineage4.9
|
None
|
ERR1034652
|
Other
|
La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2
|
None
|
SRR1172951
|
Other
|
lineage4.9
|
None
|
SRR1181325
|
Sensitive
|
lineage4.9
|
None
|
SRR13861510
|
Other
|
lineage4.9
|
None
|
SRR1196768
|
MDR-TB
|
|
None
|
ERR176658
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR4818929
|
HR-TB
|
lineage4.9
|
None
|
ERR4769444
|
HR-TB
|
lineage4.9
|
None
|
SRR1196583
|
Other
|
lineage4.9
|
None
|
ERR11252599
|
Other
|
M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3
|
None
|
SRR6046540
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR1035239
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR3675275
|
Other
|
lineage4.9
|
None
|
ERR11252736
|
Other
|
lineage4.9
|
None
|
ERR4769417
|
Pre-XDR-TB
|
lineage4.9
|
None
|
ERR4810624
|
MDR-TB
|
lineage2.2
|
None
|
ERR2693242
|
RR-TB
|
lineage2.1;lineage4.9
|
None
|
ERR1063856
|
HR-TB
|
M.canetti;lineage4.9;lineage9
|
None
|
ERR176568
|
HR-TB
|
La3;lineage2.1;lineage4.9
|
None
|
SRR6046514
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR3742657
|
Pre-XDR-TB
|
La3;M.canetti;lineage2.2.1
|
None
|
ERR294248
|
MDR-TB
|
lineage2.1;lineage4.9
|
None
|
SRR1173629
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR4817896
|
HR-TB
|
lineage2.2.1
|
None
|
SRR1183049
|
RR-TB
|
lineage2.2
|
None
|
SRR25827687
|
MDR-TB
|
lineage1.1.2
|
None
|
ERR5311081
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR4811022
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR1180946
|
Sensitive
|
lineage2;lineage4.9
|
None
|
SRR18003019
|
Other
|
lineage2.2.1
|
None
|
ERR245758
|
Other
|
lineage4.9.1
|
None
|
SRR26399973
|
Other
|
La3;lineage4.9
|
None
|
ERR9119669
|
HR-TB
|
lineage4.9
|
None
|
ERR4819932
|
Other
|
lineage4.7
|
None
|
SRR1173355
|
Other
|
lineage4.9
|
None
|
ERR9786627
|
Other
|
lineage4.1.2.1
|
None
|
ERR5162090
|
RR-TB
|
lineage4.9
|
None
|
ERR124651
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3
|
None
|
SRR3416776
|
Other
|
lineage2.1
|
None
|
ERR9117721
|
HR-TB
|
La3;lineage1.1.2
|
None
|
SRR5153091
|
HR-TB
|
lineage4.3.3
|
None
|
ERR4821053
|
RR-TB
|
lineage3
|
None
|
ERR4811142
|
RR-TB
|
La3;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR7496517
|
Other
|
|
None
|
ERR12015086
|
RR-TB
|
lineage4.8
|
None
|
ERR3797048
|
Other
|
La3;lineage4.9
|
None
|
ERR323108
|
HR-TB
|
La1.7;lineage4.9
|
None
|
SRR3675495
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR9896144
|
Other
|
lineage3
|
None
|
SRR1181237
|
Sensitive
|
lineage2.2.1;lineage4
|
None
|
SRR1163221
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR6044790
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR126608
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR736837
|
Pre-XDR-TB
|
lineage4.9
|
None
|
ERR736863
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR1165628
|
Other
|
La3;lineage4.9
|
None
|
SRR1184114
|
Sensitive
|
lineage2.2.1;lineage4.9
|
None
|
ERR323040
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR14801759
|
HR-TB
|
La1.7;lineage4.9
|
None
|
ERR11466146
|
Other
|
lineage4.3.4.2.1
|
None
|
SRR1184312
|
Other
|
lineage2.2.1
|
None
|
ERR4811105
|
HR-TB
|
La3;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR15368973
|
Other
|
lineage4.9
|
None
|
ERR4815604
|
Other
|
|
None
|
ERR926160
|
Sensitive
|
lineage4.9
|
None
|
ERR4816551
|
HR-TB
|
lineage4.1.1.3
|
None
|
SRR3675216
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR2446566
|
Other
|
lineage4.9
|
None
|
ERR9786526
|
Other
|
lineage4.1;lineage4.8
|
None
|
ERR4769521
|
RR-TB
|
lineage4.9
|
None
|
SRR6046521
|
Other
|
lineage4.4.1.1
|
None
|
SRR1180420
|
Sensitive
|
lineage4.9
|
None
|
ERR4817692
|
HR-TB
|
lineage1.1.2;lineage4
|
None
|
SRR29016901
|
Other
|
La3;lineage4.9
|
None
|
ERR161033
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR1181283
|
Sensitive
|
lineage4.9
|
None
|
ERR4797588
|
MDR-TB
|
lineage3
|
None
|
ERR216938
|
HR-TB
|
La1.7;lineage4.9
|
None
|
ERR067699
|
Sensitive
|
La1;lineage2;lineage4.9
|
None
|
ERR5917710
|
Other
|
lineage4.1.2.1
|
None
|
ERR4872119
|
MDR-TB
|
lineage4.6.2.2
|
None
|
SRR15014655
|
Other
|
M.canetti;lineage1
|
None
|
ERR3797036
|
HR-TB
|
lineage2.1;lineage4.1.4;lineage4.9
|
None
|
SRR3675248
|
Other
|
lineage4.9
|
None
|
ERR1063846
|
HR-TB
|
lineage4.9
|
None
|
ERR3797085
|
Other
|
lineage4.9
|
None
|
ERR9786515
|
Other
|
lineage4.1.2.1
|
None
|
SRR6325447
|
MDR-TB
|
lineage2.1;lineage4.1.1.1;lineage6.3
|
None
|
SRR1184380
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR5311082
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.1.4;lineage4.9
|
None
|
SRR1791696
|
Other
|
La1.8.1
|
None
|
SRR6044942
|
HR-TB
|
lineage4.9
|
None
|
SRR6785263
|
Sensitive
|
lineage2.2.1
|
None
|
SRR3675236
|
Other
|
|
None
|
ERR3273109
|
HR-TB
|
lineage4
|
None
|
SRR3675561
|
Other
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR6045399
|
Other
|
M.canetti;lineage4.9
|
None
|
ERR278594
|
HR-TB
|
lineage2.1;lineage4.9
|
None
|
ERR2229143
|
RR-TB
|
lineage4.9
|
None
|
SRR3675515
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR3283044
|
Other
|
lineage4
|
None
|
ERR4811311
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR5311089
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR1183054
|
Sensitive
|
lineage4.9
|
None
|
SRR3675464
|
HR-TB
|
lineage2.1;lineage4.9;lineage6.3;lineage8
|
None
|
SRR1180977
|
Sensitive
|
lineage4.9
|
None
|
SRR1165699
|
Other
|
lineage4.9
|
None
|
ERR4797201
|
Other
|
lineage1.2.2.2
|
None
|
ERR4800341
|
Other
|
lineage3
|
None
|
ERR4816478
|
HR-TB
|
lineage4
|
None
|
ERR760733
|
MDR-TB
|
lineage4.1.2.1.1
|
None
|
ERR926154
|
Sensitive
|
lineage4.9
|
None
|
ERR9786711
|
Sensitive
|
lineage4.6.2.2
|
None
|
SRR28119777
|
Other
|
lineage4.9
|
None
|
SRR3675518
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
ERR702406
|
Other
|
lineage2.1
|
None
|
SRR069989
|
HR-TB
|
lineage2.2.2
|
None
|
SRR3675549
|
Other
|
lineage4.9
|
None
|
ERR3797047
|
MDR-TB
|
lineage4.9
|
None
|
SRR1172817
|
Other
|
La3
|
None
|
SRR1173400
|
Other
|
lineage4.9
|
None
|
ERR11466499
|
Other
|
lineage4.3.4.1
|
None
|
SRR21677886
|
Sensitive
|
lineage4.9
|
None
|
ERR473332
|
Other
|
lineage4.9
|
None
|
ERR323055
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR1175512
|
Sensitive
|
lineage4.9
|
None
|
SRR3675494
|
RR-TB
|
lineage4.9
|
None
|
SRR29050859
|
Other
|
lineage4.9
|
None
|
ERR4799513
|
HR-TB
|
lineage2.2
|
None
|
SRR21732954
|
Sensitive
|
lineage4.9
|
None
|
SRR3675517
|
Other
|
La3;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR1180413
|
Sensitive
|
lineage4.9
|
None
|
ERR9786656
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR5341418
|
Other
|
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7
|
None
|
SRR3675490
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR5908228
|
RR-TB
|
lineage4.3.3
|
None
|
ERR7821163
|
Other
|
lineage2.2.1
|
None
|
SRR26399265
|
Other
|
lineage2.2.1
|
None
|
SRR1184294
|
Other
|
lineage4.9
|
None
|
ERR5311090
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR11465024
|
Other
|
lineage4.1.1.3
|
None
|
ERR124652
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR1162864
|
Other
|
lineage4.1.2.1
|
None
|
SRR6044815
|
Other
|
lineage4.9
|
None
|
SRR28119756
|
Other
|
lineage4.9;lineage6.3
|
None
|
ERR7911670
|
XDR-TB
|
M.canetti;lineage2.2
|
None
|
ERR4797474
|
Sensitive
|
lineage4.9
|
None
|
ERR736835
|
HR-TB
|
La1.7;M.canetti;lineage4.9
|
None
|
ERR926165
|
Sensitive
|
lineage4.9
|
None
|
ERR9786440
|
Other
|
lineage4.1
|
None
|
SRR3675243
|
Other
|
lineage4.9
|
None
|
SRR3675555
|
HR-TB
|
lineage2.1;lineage4.9;lineage7
|
None
|
SRR1173363
|
Other
|
|
None
|
SRR3675572
|
Other
|
|
None
|
SRR3675545
|
Other
|
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR3675457
|
Other
|
lineage4.9
|
None
|
SRR5341333
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR5311097
|
Sensitive
|
lineage4.2;lineage4.6.3;lineage4.9
|
None
|
SRR3675510
|
Sensitive
|
La3;lineage4.9
|
None
|
ERR3275196
|
Other
|
lineage2.2.1
|
nl
|
ERR323060
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR1180410
|
Sensitive
|
lineage4.9
|
None
|
ERR5311098
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR6326069
|
Pre-XDR-TB
|
lineage4.3.4.1
|
None
|
ERR6358837
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
SRR1196566
|
Other
|
lineage4.9
|
None
|
SRR3675232
|
Other
|
lineage4.1.2.1
|
None
|
ERR1063858
|
HR-TB
|
lineage4.9
|
None
|
ERR323044
|
HR-TB
|
lineage4.3.4.2.1
|
None
|
SRR29050928
|
Other
|
lineage4.9
|
None
|
SRR6045832
|
Other
|
lineage4.9
|
None
|
SRR6045952
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR926155
|
Sensitive
|
lineage4.9
|
None
|
ERR3283036
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR4407463
|
HR-TB
|
|
None
|
ERR9787165
|
Other
|
lineage6.1.3
|
None
|
ERR926157
|
Sensitive
|
lineage4.9
|
None
|
SRR1173778
|
Other
|
lineage4.9
|
None
|
ERR9786986
|
HR-TB
|
lineage4.1.2.1
|
None
|
ERR4188342
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR3797029
|
Other
|
lineage4.9
|
None
|
ERR4769439
|
HR-TB
|
lineage4.9
|
None
|
ERR323063
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR6358755
|
Other
|
lineage4.6.1.1
|
None
|
SRR3742665
|
HR-TB
|
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3
|
None
|
ERR4817893
|
Other
|
La3;lineage4.8
|
None
|
ERR2514327
|
HR-TB
|
lineage4.8
|
None
|
SRR6044875
|
Sensitive
|
lineage4.9
|
None
|
SRR1181215
|
Sensitive
|
lineage4.4.1.1.1
|
None
|
ERR161034
|
HR-TB
|
lineage4.3.4.2.1
|
None
|
ERR2693239
|
RR-TB
|
M.canetti;lineage2.1;lineage4
|
None
|
ERR736871
|
HR-TB
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR736874
|
Other
|
La3;lineage2.1;lineage4.9
|
None
|
ERR5311083
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR4817735
|
Other
|
lineage4.8
|
None
|
SRR1180444
|
Sensitive
|
lineage4.9
|
None
|
ERR1063839
|
MDR-TB
|
La2;lineage2.2
|
None
|
ERR323034
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage3.1
|
None
|
ERR772255
|
MDR-TB
|
lineage2.1;lineage4.3.2
|
None
|
ERR4188247
|
HR-TB
|
lineage4.9
|
None
|
SRR1169194
|
Other
|
lineage4.9
|
None
|
SRR6046362
|
MDR-TB
|
La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9
|
None
|
ERR5311100
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR5311101
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR4820773
|
HR-TB
|
lineage4.9
|
None
|
ERR323036
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR124642
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3
|
None
|
SRR1196677
|
Other
|
lineage2.2
|
None
|
ERR13267017
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR3675529
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR3797028
|
HR-TB
|
M.canetti;lineage4.9
|
None
|
SRR1167055
|
Other
|
lineage4.1.2.1
|
None
|
SRR6325445
|
HR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
ERR736848
|
Other
|
lineage4.9
|
None
|
SRR3675269
|
RR-TB
|
lineage4.9
|
None
|
SRR3675574
|
Other
|
lineage4.6.3;lineage4.9;lineage6.3
|
None
|
ERR323115
|
Sensitive
|
lineage4.9
|
None
|
ERR1063857
|
MDR-TB
|
La2;lineage4.9
|
None
|
ERR1035138
|
MDR-TB
|
lineage2.1;lineage4.9
|
None
|
ERR1873396
|
Pre-XDR-TB
|
M.canetti;lineage2.2
|
None
|
ERR2027263
|
Other
|
lineage4
|
None
|
ERR3283014
|
Sensitive
|
La3;lineage4.9
|
None
|
SRR6046133
|
HR-TB
|
lineage4.9
|
None
|
SRR13423649
|
Sensitive
|
lineage2.2.1
|
None
|
SRR6046783
|
Other
|
La1.7;M.canetti;lineage4.9
|
None
|
ERR4816999
|
Other
|
|
None
|
SRR6045219
|
HR-TB
|
lineage4.9
|
None
|
ERR9119525
|
MDR-TB
|
lineage4.6.2.2
|
None
|
ERR9786617
|
Other
|
lineage4.1.1.1
|
None
|
ERR5311091
|
Other
|
La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3
|
None
|
ERR4769474
|
HR-TB
|
lineage4.9
|
None
|
ERR6359069
|
Sensitive
|
lineage4.9
|
None
|
ERR3283016
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR3283047
|
Sensitive
|
La3;lineage4.9
|
None
|
ERR3283011
|
Other
|
La3;lineage4.9
|
None
|
ERR926161
|
Sensitive
|
lineage4.9
|
None
|
SRR1196474
|
Other
|
lineage3.1.1
|
None
|
SRR6045327
|
Other
|
lineage2.1;lineage4.3.2;lineage4.9
|
None
|
SRR3675481
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR6458421
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1915481
|
Other
|
La1.2.BCG;lineage4.9
|
None
|
ERR485006
|
HR-TB
|
lineage4.9
|
None
|
ERR176793
|
Other
|
lineage4.1.1.1
|
None
|
ERR4798406
|
MDR-TB
|
La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3
|
None
|
SRR3675524
|
Other
|
lineage4.9;lineage6.3
|
None
|
ERR212121
|
HR-TB
|
lineage4.9;lineage6.3
|
None
|
ERR926163
|
Other
|
lineage4.9
|
None
|
ERR926159
|
Sensitive
|
lineage4.9
|
None
|
SRR069981
|
HR-TB
|
lineage2.2.2
|
None
|
ERR11466044
|
Other
|
lineage4.1.1.3
|
None
|
ERR11465025
|
Other
|
lineage4.1.1.3
|
None
|
ERR323037
|
Other
|
lineage4.9
|
None
|
ERR108471
|
HR-TB
|
lineage4.9
|
None
|
SRR1181349
|
Sensitive
|
lineage4
|
None
|
ERR13285191
|
Sensitive
|
lineage4.9
|
None
|
ERR11081258
|
Other
|
lineage4.8
|
None
|
ERR4819877
|
HR-TB
|
lineage4.9
|
None
|
SRR6045290
|
RR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR11049020
|
Other
|
lineage4.8
|
None
|
SRR6045948
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR3797073
|
Other
|
La1.8.1
|
None
|
SRR25827605
|
Pre-XDR-TB
|
lineage2.2.1;lineage3;lineage4
|
None
|
ERR4816466
|
HR-TB
|
lineage4.9
|
None
|
ERR4188350
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR971389
|
Sensitive
|
lineage4.9
|
None
|
ERR1035122
|
Sensitive
|
lineage4.9
|
None
|
SRR8217918
|
HR-TB
|
lineage4.9
|
None
|
SRR12416842
|
HR-TB
|
lineage4.9
|
None
|
ERR4872094
|
MDR-TB
|
lineage5.2
|
None
|
ERR3290633
|
Other
|
lineage4.2;lineage4.6.3;lineage4.9.1
|
None
|
ERR133825
|
HR-TB
|
La1;lineage4.9
|
None
|
ERR5311099
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR1023509
|
Other
|
lineage4.9
|
None
|
ERR4816656
|
Other
|
lineage4.9
|
None
|
ERR176766
|
HR-TB
|
lineage2.1;lineage4.9
|
None
|
ERR9786611
|
HR-TB
|
lineage4.1.3
|
None
|
SRR3675581
|
Other
|
lineage2.1;lineage4.9
|
None
|
SRR1172234
|
Other
|
lineage4.9
|
None
|
SRR7496509
|
Other
|
|
None
|
ERR702404
|
HR-TB
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR1180399
|
Sensitive
|
lineage4.9
|
None
|
ERR1023236
|
Other
|
lineage6.1.3
|
None
|
SRR29017461
|
Other
|
La3;lineage4.9
|
None
|
ERR1334034
|
Other
|
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3
|
None
|
ERR4797054
|
Pre-XDR-TB
|
lineage2.1
|
None
|
ERR9787153
|
Other
|
lineage6.1.3
|
None
|
ERR4798493
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11488822
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.1.2.1
|
None
|
ERR3283017
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9
|
None
|
SRR1184346
|
HR-TB
|
lineage3.1
|
None
|
SRR1510066
|
RR-TB
|
lineage1.2.1.2.1
|
None
|
SRR3675311
|
Other
|
lineage4.9
|
None
|
SRR7496472
|
Other
|
lineage4.9
|
None
|
SRR6079962
|
HR-TB
|
lineage2.2.1.1
|
None
|
SRR1181390
|
Sensitive
|
lineage2.2.1;lineage4.9
|
None
|
SRR3675312
|
Sensitive
|
lineage4.9
|
None
|
ERR323041
|
HR-TB
|
M.canetti;lineage2.1
|
None
|
SRR29231548
|
MDR-TB
|
lineage5.2
|
None
|
ERR4800527
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4814536
|
MDR-TB
|
M.canetti;lineage2.1;lineage3
|
None
|
ERR3797070
|
Other
|
lineage4.9
|
None
|
SRR1165584
|
Other
|
lineage4.1.2.1
|
None
|
ERR11465510
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
ERR9119096
|
RR-TB
|
lineage4.3.3
|
None
|
ERR11252558
|
Other
|
lineage4.6.3;lineage4.9
|
None
|
SRR1184381
|
MDR-TB
|
|
None
|
SRR1173118
|
Other
|
lineage2.2.1
|
None
|
SRR28351488
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25827682
|
Other
|
|
None
|
ERR212033
|
Other
|
lineage4.9
|
None
|
SRR6325442
|
HR-TB
|
lineage2.1;lineage4.1.1.1;lineage6.3
|
None
|
ERR234659
|
Other
|
|
None
|
SRR28119752
|
Other
|
lineage4.9
|
None
|
SRR8552928
|
HR-TB
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR473314
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR4814352
|
Other
|
lineage2.2.1
|
None
|
SRR13861305
|
Other
|
lineage4.9
|
None
|
ERR3283018
|
HR-TB
|
lineage4.9
|
None
|
ERR323033
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR3077978
|
RR-TB
|
lineage1.1
|
None
|
ERR1873393
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR6046485
|
Other
|
lineage4.9
|
None
|
ERR4798262
|
HR-TB
|
La1.2.BCG
|
None
|
SRR6045233
|
Other
|
M.canetti;lineage4.9
|
None
|
SRR7131023
|
Other
|
lineage4.1.2.1
|
None
|
ERR386953
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR736831
|
Other
|
lineage4.9
|
None
|
SRR1181402
|
Sensitive
|
lineage4.9
|
None
|
SRR14066533
|
Sensitive
|
lineage1.1.1
|
None
|
ERR9119500
|
MDR-TB
|
lineage5.2
|
None
|
ERR9786642
|
Other
|
lineage4.1.2.1
|
None
|
SRR3675390
|
Other
|
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9
|
None
|
SRR3675221
|
Other
|
lineage4.9
|
None
|
SRR6325448
|
HR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
SRR28044634
|
Other
|
lineage3
|
None
|
ERR2514692
|
Other
|
|
None
|
ERR12015083
|
Other
|
La3;lineage4.8
|
None
|
SRR26937071
|
MDR-TB
|
La3;lineage2.2.1
|
None
|
ERR9786346
|
Sensitive
|
lineage4.3.4.2
|
None
|
SRR5341302
|
Other
|
La3;lineage2.1;lineage4.9
|
None
|
ERR2229542
|
Other
|
lineage4.8
|
None
|
ERR502532
|
Other
|
M.canetti;lineage2.1;lineage6.3
|
None
|
SRR1165423
|
RR-TB
|
lineage4.1.2.1
|
None
|
ERR323043
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR5311096
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR5311102
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SAMN02414850
|
Other
|
lineage4.1.2.1
|
None
|
SRR13861332
|
Other
|
lineage4.9
|
None
|
ERR6358991
|
HR-TB
|
lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3
|
None
|
ERR8976043
|
HR-TB
|
lineage2.1;lineage2.2;lineage6.3
|
None
|
ERR9786645
|
Other
|
lineage4.6.2.2
|
None
|
SRR23961559
|
Other
|
La1.7;lineage4.2
|
None
|
SRR1181351
|
Sensitive
|
lineage4.9
|
None
|
SRR6045887
|
Other
|
La1.7;M.canetti;lineage4.9
|
None
|
ERR3283057
|
Sensitive
|
La3;lineage4.9
|
None
|
SRR3675320
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9
|
None
|
ERR403298
|
MDR-TB
|
M.canetti;lineage4.2
|
None
|
ERR323054
|
MDR-TB
|
La3;M.canetti;lineage3.1
|
None
|
ERR323038
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR3509850
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR3804155
|
Other
|
lineage4.1.2.1
|
None
|
ERR11465333
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
SRR12416824
|
HR-TB
|
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3
|
None
|
SRR3675383
|
Sensitive
|
lineage4.9
|
None
|
ERR3283025
|
MDR-TB
|
La1.7;lineage4.9
|
None
|
ERR9786843
|
Other
|
|
None
|
ERR11252548
|
Other
|
lineage1.2.2.2
|
None
|
ERR11252664
|
Other
|
lineage2.2.1
|
None
|
ERR11252612
|
Other
|
La3;lineage4.9
|
None
|
SRR3675554
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR28351339
|
MDR-TB
|
lineage4
|
None
|
ERR212001
|
HR-TB
|
|
None
|
SRR1172857
|
Other
|
|
None
|
ERR9787197
|
Other
|
|
None
|
SRR28119805
|
Other
|
lineage4.9
|
None
|
SRR6789621
|
Other
|
lineage4.9
|
None
|
ERR4817060
|
Other
|
|
None
|
ERR6359045
|
Other
|
M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3
|
None
|
ERR4769442
|
Sensitive
|
lineage4.9
|
None
|