TB-Profiler result

Run: ERR9786515
Summary

Run ID: ERR9786515

Sample name:

Date: 02-04-2023 12:29:38

Number of reads: 704965

Percentage reads mapped: 82.34

Strain: lineage4.1.2.1

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 0.98
lineage4.1 Euro-American T;X;H None 0.64
lineage4.1.2 Euro-American T;H None 0.65
lineage4.1.2.1 Euro-American (Haarlem) T1;H1 RD182 0.69
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
embB 4247580 p.Ala356Val missense_variant 0.15 ethambutol
embB 4247588 p.Leu359Ile missense_variant 0.15 ethambutol
embB 4247708 p.Asn399Asp missense_variant 0.16 ethambutol
ethA 4326016 c.1457delC frameshift_variant 0.65 ethionamide
gid 4408100 c.102delG frameshift_variant 0.84 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6238 c.999G>A synonymous_variant 0.16
gyrB 6242 p.Arg335Lys missense_variant 0.17
gyrB 6250 c.1011A>G synonymous_variant 0.18
gyrB 6256 c.1017G>A synonymous_variant 0.18
gyrB 6268 c.1029C>G synonymous_variant 0.18
gyrB 6280 c.1041T>C synonymous_variant 0.18
gyrB 6286 c.1047T>C synonymous_variant 0.18
gyrB 6289 c.1050C>T synonymous_variant 0.18
gyrB 6292 c.1053G>C synonymous_variant 0.19
gyrA 6307 c.-995T>G upstream_gene_variant 0.18
gyrA 6319 c.-983G>C upstream_gene_variant 0.18
gyrA 6709 c.-593A>G upstream_gene_variant 0.19
gyrA 6712 c.-590G>C upstream_gene_variant 0.18
gyrA 6728 c.-574C>T upstream_gene_variant 0.16
gyrA 6811 c.-491C>T upstream_gene_variant 0.15
gyrA 6878 c.-424T>C upstream_gene_variant 0.16
gyrA 6881 c.-421_-419delTTGinsCTC upstream_gene_variant 0.16
gyrA 6889 c.-413G>C upstream_gene_variant 0.16
gyrA 6898 c.-404G>C upstream_gene_variant 0.18
gyrA 6901 c.-401G>C upstream_gene_variant 0.18
gyrA 6904 c.-398C>G upstream_gene_variant 0.18
gyrA 6910 c.-392G>A upstream_gene_variant 0.18
gyrA 6916 c.-386G>C upstream_gene_variant 0.18
gyrA 6919 c.-383T>C upstream_gene_variant 0.18
gyrA 6925 c.-377T>C upstream_gene_variant 0.2
gyrA 6931 c.-371A>G upstream_gene_variant 0.21
gyrA 6949 c.-353A>G upstream_gene_variant 0.21
gyrA 6952 c.-350C>G upstream_gene_variant 0.22
gyrA 6967 c.-335T>C upstream_gene_variant 0.2
gyrA 6973 c.-329G>C upstream_gene_variant 0.21
gyrA 6982 c.-320A>C upstream_gene_variant 0.21
gyrA 7007 c.-295C>T upstream_gene_variant 0.23
gyrA 7010 c.-292C>T upstream_gene_variant 0.22
gyrB 7023 p.Leu595Gln missense_variant 0.25
gyrA 7033 c.-269G>C upstream_gene_variant 0.24
gyrB 7051 p.Glu604Asp missense_variant 0.27
gyrA 7066 c.-236G>C upstream_gene_variant 0.19
gyrA 7078 c.-224A>C upstream_gene_variant 0.19
gyrA 7084 c.-218A>G upstream_gene_variant 0.19
gyrA 7090 c.-212C>T upstream_gene_variant 0.14
gyrA 7114 c.-188C>A upstream_gene_variant 0.15
gyrA 7123 c.-179C>A upstream_gene_variant 0.16
gyrB 7124 p.Ser629Thr missense_variant 0.16
gyrA 7129 c.-173T>C upstream_gene_variant 0.17
gyrA 7132 c.-170T>G upstream_gene_variant 0.17
gyrA 7141 c.-161T>C upstream_gene_variant 0.17
gyrA 7165 c.-137C>G upstream_gene_variant 0.17
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7442 c.141G>C synonymous_variant 0.16
gyrA 7451 c.150C>G synonymous_variant 0.17
gyrA 7457 c.156T>C synonymous_variant 0.16
gyrA 7480 p.Phe60Tyr missense_variant 0.15
gyrA 7532 c.231T>C synonymous_variant 0.16
gyrA 7541 c.240C>G synonymous_variant 0.16
gyrA 7547 c.246C>T synonymous_variant 0.16
gyrA 7562 c.261C>T synonymous_variant 0.18
gyrA 7571 c.270G>C synonymous_variant 0.17
gyrA 7585 p.Ser95Thr missense_variant 0.66
gyrA 7622 c.321C>T synonymous_variant 0.16
gyrA 7625 c.324G>C synonymous_variant 0.16
gyrA 7637 c.336C>G synonymous_variant 0.16
gyrA 7652 c.351C>T synonymous_variant 0.16
gyrA 7658 c.357A>G synonymous_variant 0.17
gyrA 7664 c.363T>C synonymous_variant 0.16
gyrA 8504 c.1203G>C synonymous_variant 0.17
gyrA 8516 c.1215T>C synonymous_variant 0.16
gyrA 8519 c.1218A>C synonymous_variant 0.16
gyrA 8520 c.1219C>T synonymous_variant 0.16
gyrA 8528 c.1227G>C synonymous_variant 0.17
gyrA 8543 c.1242C>G synonymous_variant 0.21
gyrA 8546 c.1245T>C synonymous_variant 0.17
gyrA 8553 c.1252C>A synonymous_variant 0.19
gyrA 8561 c.1260A>C synonymous_variant 0.18
gyrA 8579 p.Asp426Glu missense_variant 0.17
gyrA 8588 c.1287G>A synonymous_variant 0.15
gyrA 8627 c.1326C>A synonymous_variant 0.14
gyrA 8807 c.1506C>T synonymous_variant 0.14
gyrA 8818 p.Ser506Asn missense_variant 0.17
gyrA 8828 c.1527T>C synonymous_variant 0.16
gyrA 8829 c.1528T>C synonymous_variant 0.16
gyrA 8852 c.1551T>C synonymous_variant 0.23
gyrA 8858 c.1557T>C synonymous_variant 0.23
gyrA 8867 c.1566A>G synonymous_variant 0.24
gyrA 8870 c.1569G>C synonymous_variant 0.23
gyrA 8873 c.1572A>C synonymous_variant 0.22
gyrA 8891 c.1590G>A synonymous_variant 0.21
gyrA 8897 c.1596T>C synonymous_variant 0.2
gyrA 8903 c.1602T>C synonymous_variant 0.2
gyrA 8933 c.1632G>C synonymous_variant 0.2
gyrA 8946 c.1645_1647delTTGinsCTC synonymous_variant 0.22
gyrA 8966 c.1665C>G synonymous_variant 0.18
gyrA 8967 p.Ala556Arg missense_variant 0.18
gyrA 8987 c.1686C>A synonymous_variant 0.2
gyrA 8990 c.1689C>G synonymous_variant 0.2
gyrA 8996 c.1695T>C synonymous_variant 0.17
gyrA 8998 p.Leu566Trp missense_variant 0.17
gyrA 9080 c.1779G>T synonymous_variant 0.15
gyrA 9153 p.Thr618Glu missense_variant 0.17
gyrA 9158 c.1857C>T synonymous_variant 0.17
gyrA 9182 c.1881T>C synonymous_variant 0.19
gyrA 9191 c.1890G>C synonymous_variant 0.19
gyrA 9200 c.1899A>G synonymous_variant 0.17
gyrA 9267 p.Asn656Gly missense_variant 0.17
gyrA 9304 p.Gly668Asp missense_variant 0.62
fgd1 490827 c.45C>T synonymous_variant 0.17
fgd1 490851 c.69A>T synonymous_variant 0.17
fgd1 490868 p.Ala29Gly missense_variant 0.17
fgd1 490887 c.105G>A synonymous_variant 0.19
fgd1 490890 c.108C>G synonymous_variant 0.21
fgd1 490896 c.114C>T synonymous_variant 0.22
fgd1 490905 c.123T>C synonymous_variant 0.24
fgd1 490911 c.129T>G synonymous_variant 0.24
fgd1 490917 c.135C>G synonymous_variant 0.24
fgd1 490921 p.Gln47Glu missense_variant 0.24
fgd1 490929 c.147C>G synonymous_variant 0.24
fgd1 490932 c.150T>C synonymous_variant 0.24
fgd1 490935 c.153C>G synonymous_variant 0.24
fgd1 490948 p.Ser56Ala missense_variant 0.24
fgd1 490962 c.180T>G synonymous_variant 0.19
fgd1 490974 c.192T>C synonymous_variant 0.21
fgd1 490977 c.195C>G synonymous_variant 0.21
fgd1 490980 p.Asn66Lys missense_variant 0.21
fgd1 490984 p.Leu68Ile missense_variant 0.21
fgd1 490987 p.Leu69Thr missense_variant 0.22
fgd1 490998 c.216T>C synonymous_variant 0.27
fgd1 491001 c.219G>C synonymous_variant 0.27
fgd1 491007 c.225G>C synonymous_variant 0.29
fgd1 491013 c.231C>G synonymous_variant 0.3
fgd1 491043 c.261T>G synonymous_variant 0.48
fgd1 491049 c.267T>C synonymous_variant 0.48
fgd1 491063 p.Gly94Ala missense_variant 0.45
fgd1 491077 p.Asn99Asp missense_variant 0.39
fgd1 491082 c.300T>C synonymous_variant 0.41
fgd1 491083 p.Val101Ile missense_variant 0.41
fgd1 491091 c.309T>C synonymous_variant 0.39
fgd1 491094 c.312C>G synonymous_variant 0.39
fgd1 491097 c.315G>C synonymous_variant 0.38
fgd1 491100 c.318C>T synonymous_variant 0.38
fgd1 491106 c.324T>C synonymous_variant 0.36
fgd1 491121 c.339A>G synonymous_variant 0.36
fgd1 491130 c.348C>G synonymous_variant 0.33
fgd1 491144 p.Ala121Asp missense_variant 0.3
fgd1 491151 c.369G>A synonymous_variant 0.33
fgd1 491173 c.391C>A synonymous_variant 0.3
fgd1 491181 c.399T>C synonymous_variant 0.32
fgd1 491184 c.402A>G synonymous_variant 0.3
fgd1 491191 p.Gly137Arg missense_variant 0.25
fgd1 491194 c.412_414delCTAinsTTG synonymous_variant 0.24
fgd1 491202 c.420G>C synonymous_variant 0.25
fgd1 491203 p.Gln141Glu missense_variant 0.25
fgd1 491212 p.Ser144Arg missense_variant 0.24
fgd1 491217 c.435T>C synonymous_variant 0.24
fgd1 491232 c.450T>C synonymous_variant 0.25
fgd1 491241 p.Asp153Glu missense_variant 0.2
fgd1 491244 c.462T>C synonymous_variant 0.21
fgd1 491591 p.Lys270Met missense_variant 0.96
mshA 575679 p.Asn111Ser missense_variant 0.44
mshA 575713 c.366G>A synonymous_variant 0.15
mshA 575719 c.372C>T synonymous_variant 0.15
mshA 575734 c.387T>G synonymous_variant 0.15
mshA 575737 c.390T>C synonymous_variant 0.15
mshA 575746 c.399C>G synonymous_variant 0.15
mshA 575752 c.405G>C synonymous_variant 0.16
mshA 575755 c.408G>A synonymous_variant 0.16
mshA 575770 c.423G>A synonymous_variant 0.17
mshA 575771 p.Val142Ser missense_variant 0.17
mshA 575779 c.432A>G synonymous_variant 0.17
mshA 575782 c.435G>C synonymous_variant 0.16
mshA 575809 c.462C>T synonymous_variant 0.2
mshA 575812 c.465C>T synonymous_variant 0.21
mshA 575821 c.474G>C synonymous_variant 0.19
mshA 575824 c.477T>G synonymous_variant 0.19
mshA 575830 c.483C>G synonymous_variant 0.19
mshA 575833 c.486C>G synonymous_variant 0.19
mshA 575845 c.498C>T synonymous_variant 0.19
mshA 575884 c.537G>C synonymous_variant 0.23
mshA 575887 c.540G>C synonymous_variant 0.23
mshA 575893 c.546C>G synonymous_variant 0.18
mshA 575896 c.549G>C synonymous_variant 0.17
rpoB 760115 c.309C>T synonymous_variant 0.55
rpoB 760223 c.417T>C synonymous_variant 0.17
rpoB 760235 c.429T>C synonymous_variant 0.21
rpoB 760283 c.477G>C synonymous_variant 0.21
rpoB 760298 c.492G>C synonymous_variant 0.21
rpoB 760307 c.501T>C synonymous_variant 0.16
rpoB 760310 c.504G>C synonymous_variant 0.16
rpoB 760381 p.Thr192Met missense_variant 0.14
rpoB 760406 c.600G>C synonymous_variant 0.2
rpoB 760412 c.606C>G synonymous_variant 0.2
rpoB 760424 c.618C>G synonymous_variant 0.21
rpoB 760430 c.624T>C synonymous_variant 0.21
rpoB 760481 c.675G>C synonymous_variant 0.16
rpoB 760484 c.678A>G synonymous_variant 0.19
rpoB 760522 p.Ser239Asn missense_variant 0.16
rpoB 760934 c.1128C>T synonymous_variant 0.16
rpoB 760946 c.1140A>G synonymous_variant 0.19
rpoB 760949 c.1143C>T synonymous_variant 0.18
rpoB 760982 c.1176G>C synonymous_variant 0.18
rpoB 760985 c.1179G>C synonymous_variant 0.18
rpoB 760991 c.1185G>C synonymous_variant 0.18
rpoB 761006 c.1200C>G synonymous_variant 0.22
rpoB 761015 c.1209G>C synonymous_variant 0.23
rpoB 761021 c.1215G>C synonymous_variant 0.21
rpoB 761027 c.1221A>G synonymous_variant 0.24
rpoB 761036 c.1230G>C synonymous_variant 0.26
rpoB 761037 c.1231T>C synonymous_variant 0.25
rpoB 761057 c.1251G>C synonymous_variant 0.33
rpoB 761102 c.1296A>G synonymous_variant 0.34
rpoB 761129 c.1323G>C synonymous_variant 0.32
rpoB 761132 c.1326G>T synonymous_variant 0.32
rpoB 761133 c.1327T>C synonymous_variant 0.32
rpoB 761150 c.1344A>C synonymous_variant 0.39
rpoB 761153 c.1347G>C synonymous_variant 0.38
rpoB 761165 c.1359G>C synonymous_variant 0.38
rpoB 761180 c.1374A>C synonymous_variant 0.33
rpoB 761189 c.1383T>C synonymous_variant 0.29
rpoB 761195 c.1389G>C synonymous_variant 0.27
rpoB 761207 c.1401C>T synonymous_variant 0.28
rpoB 761213 c.1407G>C synonymous_variant 0.29
rpoB 761219 c.1413G>C synonymous_variant 0.32
rpoB 761249 c.1443A>G synonymous_variant 0.27
rpoB 761255 c.1449T>G synonymous_variant 0.26
rpoB 761261 c.1455G>T synonymous_variant 0.22
rpoB 761306 c.1500C>G synonymous_variant 0.22
rpoB 761312 c.1506G>C synonymous_variant 0.21
rpoB 761327 c.1521A>G synonymous_variant 0.22
rpoB 761330 c.1524G>C synonymous_variant 0.25
rpoB 761354 c.1548C>T synonymous_variant 0.21
rpoB 761360 c.1554T>C synonymous_variant 0.18
rpoB 761362 p.Ser519Thr missense_variant 0.18
rpoB 761373 p.Val523His missense_variant 0.17
rpoB 761408 c.1602G>C synonymous_variant 0.18
rpoB 761414 c.1608A>G synonymous_variant 0.18
rpoB 761435 c.1629T>C synonymous_variant 0.16
rpoB 761438 c.1632G>C synonymous_variant 0.16
rpoB 761439 p.Asp545Asn missense_variant 0.16
rpoB 761444 c.1638T>C synonymous_variant 0.16
rpoB 761447 c.1641C>G synonymous_variant 0.16
rpoB 761452 p.Val549Asp missense_variant 0.15
rpoB 761457 p.Pro551Ser missense_variant 0.16
rpoB 761477 c.1671C>G synonymous_variant 0.2
rpoB 761492 c.1686G>C synonymous_variant 0.2
rpoB 761510 c.1704T>C synonymous_variant 0.22
rpoB 761537 c.1731C>G synonymous_variant 0.22
rpoB 761588 c.1782C>T synonymous_variant 0.17
rpoB 761606 c.1800C>G synonymous_variant 0.17
rpoB 761612 c.1806G>C synonymous_variant 0.16
rpoB 761615 c.1809A>C synonymous_variant 0.16
rpoB 761636 c.1830G>T synonymous_variant 0.24
rpoB 761639 c.1833G>A synonymous_variant 0.24
rpoB 761645 c.1839C>G synonymous_variant 0.23
rpoB 761648 c.1842T>C synonymous_variant 0.27
rpoB 761657 c.1851C>G synonymous_variant 0.25
rpoB 761675 c.1869G>C synonymous_variant 0.2
rpoB 761720 c.1914C>G synonymous_variant 0.17
rpoB 761732 c.1926C>G synonymous_variant 0.17
rpoB 761735 c.1929C>G synonymous_variant 0.18
rpoB 761747 c.1941G>C synonymous_variant 0.17
rpoB 761750 c.1944G>C synonymous_variant 0.17
rpoB 761765 c.1959T>C synonymous_variant 0.19
rpoB 761772 p.His656Ala missense_variant 0.2
rpoB 761778 p.Asn658Asp missense_variant 0.19
rpoB 761791 p.Arg662His missense_variant 0.19
rpoB 761815 p.Ala670Asp missense_variant 0.15
rpoB 762114 p.Ile770Val missense_variant 0.17
rpoB 762143 c.2337T>C synonymous_variant 0.15
rpoB 762167 c.2361T>C synonymous_variant 0.16
rpoB 762206 c.2400C>G synonymous_variant 0.15
rpoC 762929 c.-441G>C upstream_gene_variant 0.19
rpoC 762989 c.-381G>C upstream_gene_variant 0.23
rpoC 763013 c.-357C>G upstream_gene_variant 0.29
rpoC 763028 c.-342T>C upstream_gene_variant 0.26
rpoC 763031 c.-339T>G upstream_gene_variant 0.26
rpoC 763034 c.-336C>G upstream_gene_variant 0.24
rpoC 763040 c.-330C>G upstream_gene_variant 0.22
rpoC 763070 c.-300T>C upstream_gene_variant 0.24
rpoC 763085 c.-285C>G upstream_gene_variant 0.27
rpoC 763115 c.-255T>C upstream_gene_variant 0.21
rpoC 763136 c.-234C>T upstream_gene_variant 0.15
rpoC 763441 c.72C>T synonymous_variant 0.23
rpoC 763444 c.75T>C synonymous_variant 0.23
rpoC 763456 c.87A>G synonymous_variant 0.26
rpoC 763486 c.117T>G synonymous_variant 0.29
rpoC 763528 c.159G>A synonymous_variant 0.3
rpoC 763546 c.177A>G synonymous_variant 0.3
rpoC 763570 c.201G>C synonymous_variant 0.32
rpoC 763573 c.204G>C synonymous_variant 0.31
rpoC 763594 c.225C>T synonymous_variant 0.28
rpoC 763633 c.264T>C synonymous_variant 0.3
rpoC 763636 c.267T>C synonymous_variant 0.31
rpoC 763660 c.291T>G synonymous_variant 0.34
rpoC 763675 c.306C>G synonymous_variant 0.33
rpoC 763696 c.327T>C synonymous_variant 0.32
rpoC 763702 c.333C>G synonymous_variant 0.34
rpoC 763717 c.348T>C synonymous_variant 0.32
rpoC 763723 c.354G>C synonymous_variant 0.25
rpoC 763732 c.363C>G synonymous_variant 0.21
rpoC 763741 c.372C>T synonymous_variant 0.21
rpoC 763744 c.375G>C synonymous_variant 0.21
rpoC 763765 c.396T>C synonymous_variant 0.23
rpoC 763774 c.405G>C synonymous_variant 0.18
rpoC 764112 p.Tyr248Phe missense_variant 0.17
rpoC 764116 c.747C>T synonymous_variant 0.25
rpoC 764131 c.762T>C synonymous_variant 0.26
rpoC 764140 c.771C>T synonymous_variant 0.26
rpoC 764188 c.819A>G synonymous_variant 0.24
rpoC 764195 p.Ser276Ile missense_variant 0.24
rpoC 764203 c.834G>C synonymous_variant 0.23
rpoC 764206 c.837T>C synonymous_variant 0.22
rpoC 764215 c.846A>G synonymous_variant 0.22
rpoC 764236 c.867G>A synonymous_variant 0.22
rpoC 764248 c.879C>G synonymous_variant 0.16
rpoC 764419 c.1050C>G synonymous_variant 0.18
rpoC 764428 c.1059G>C synonymous_variant 0.18
rpoC 764431 c.1062G>C synonymous_variant 0.18
rpoC 764434 c.1065A>G synonymous_variant 0.18
rpoC 764446 c.1077T>C synonymous_variant 0.24
rpoC 764449 c.1080G>C synonymous_variant 0.24
rpoC 764452 c.1083T>C synonymous_variant 0.25
rpoC 764458 c.1089G>C synonymous_variant 0.25
rpoC 764461 c.1092A>G synonymous_variant 0.25
rpoC 764489 c.1120C>T synonymous_variant 0.27
rpoC 764497 c.1128A>G synonymous_variant 0.25
rpoC 764510 c.1141C>T synonymous_variant 0.22
rpoC 764521 c.1152T>C synonymous_variant 0.22
rpoC 764527 c.1158C>T synonymous_variant 0.22
rpoC 764536 c.1167G>C synonymous_variant 0.23
rpoC 764539 c.1170C>G synonymous_variant 0.23
rpoC 764554 c.1185C>T synonymous_variant 0.22
rpoC 764560 c.1191T>C synonymous_variant 0.23
rpoC 764566 c.1197C>G synonymous_variant 0.22
rpoC 764581 c.1212T>C synonymous_variant 0.17
rpoC 764593 c.1224C>T synonymous_variant 0.21
rpoC 764611 c.1242G>T synonymous_variant 0.23
rpoC 764650 c.1281G>C synonymous_variant 0.2
rpoC 764651 c.1282_1284delTCGinsAGC synonymous_variant 0.2
rpoC 764752 c.1383G>C synonymous_variant 0.17
rpoC 764764 c.1395T>C synonymous_variant 0.18
rpoC 764809 c.1440C>T synonymous_variant 0.22
rpoC 764815 c.1446A>G synonymous_variant 0.22
rpoC 764827 c.1458G>C synonymous_variant 0.18
rpoC 764858 c.1489T>C synonymous_variant 0.17
rpoC 764872 c.1503A>G synonymous_variant 0.17
rpoC 764888 c.1519T>C synonymous_variant 0.21
rpoC 764911 c.1542A>G synonymous_variant 0.22
rpoC 764932 c.1563C>A synonymous_variant 0.21
rpoC 764935 c.1566T>C synonymous_variant 0.19
rpoC 764948 c.1579T>C synonymous_variant 0.2
rpoC 764968 c.1599T>C synonymous_variant 0.29
rpoC 764995 c.1626C>G synonymous_variant 0.24
rpoC 765019 c.1650A>G synonymous_variant 0.23
rpoC 765034 c.1665T>C synonymous_variant 0.2
rpoC 765040 c.1671T>C synonymous_variant 0.2
rpoC 765041 c.1672T>C synonymous_variant 0.2
rpoC 765047 c.1678T>C synonymous_variant 0.22
rpoC 765053 c.1684_1685delTCinsAG synonymous_variant 0.21
rpoC 765073 c.1704G>C synonymous_variant 0.21
rpoC 765076 c.1707A>G synonymous_variant 0.21
rpoC 765079 c.1710T>G synonymous_variant 0.22
rpoC 765082 c.1713G>C synonymous_variant 0.22
rpoC 765089 c.1720T>C synonymous_variant 0.22
rpoC 765103 c.1734G>T synonymous_variant 0.21
rpoC 765150 p.Gly594Glu missense_variant 0.64
rpoC 765409 c.2040T>C synonymous_variant 0.16
rpoC 765499 c.2130C>G synonymous_variant 0.21
rpoC 765529 c.2160C>T synonymous_variant 0.2
rpoC 765541 c.2172C>G synonymous_variant 0.23
rpoC 765553 c.2184C>T synonymous_variant 0.22
rpoC 765556 c.2187G>C synonymous_variant 0.21
rpoC 765559 c.2190G>C synonymous_variant 0.21
rpoC 765580 c.2211G>C synonymous_variant 0.21
rpoC 765613 p.His748Gln missense_variant 0.19
rpoC 765625 c.2256C>G synonymous_variant 0.19
rpoC 765631 p.Asp754Glu missense_variant 0.19
rpoC 765700 c.2331T>C synonymous_variant 0.26
rpoC 765734 c.2365T>C synonymous_variant 0.2
rpoC 765739 c.2370G>T synonymous_variant 0.16
rpoC 765784 c.2415C>G synonymous_variant 0.18
rpoC 765787 c.2418C>T synonymous_variant 0.17
rpoC 765793 c.2424C>G synonymous_variant 0.17
rpoC 765796 c.2427C>T synonymous_variant 0.17
rpoC 765811 c.2442T>C synonymous_variant 0.21
rpoC 765814 c.2445A>G synonymous_variant 0.19
rpoC 765826 c.2457T>C synonymous_variant 0.19
rpoC 765835 c.2466C>T synonymous_variant 0.24
rpoC 765850 c.2481G>C synonymous_variant 0.24
rpoC 765883 c.2514C>G synonymous_variant 0.19
rpoC 765886 c.2517C>G synonymous_variant 0.19
rpoC 765892 c.2523T>C synonymous_variant 0.18
rpoC 765937 c.2568T>C synonymous_variant 0.32
rpoC 765967 c.2598C>T synonymous_variant 0.27
rpoC 765982 c.2613C>G synonymous_variant 0.27
rpoC 765994 c.2625A>T synonymous_variant 0.26
rpoC 766010 c.2641_2642delTCinsAG synonymous_variant 0.25
rpoC 766021 c.2652G>C synonymous_variant 0.23
rpoC 766027 c.2658G>C synonymous_variant 0.23
rpoC 766030 c.2661C>G synonymous_variant 0.22
rpoC 766036 c.2667C>T synonymous_variant 0.21
rpoC 766043 p.Gln892Glu missense_variant 0.21
rpoC 766054 c.2685C>G synonymous_variant 0.18
rpoC 766129 c.2760C>G synonymous_variant 0.16
rpoC 766135 c.2766G>A synonymous_variant 0.21
rpoC 766141 c.2772C>T synonymous_variant 0.2
rpoC 766142 c.2773C>T synonymous_variant 0.19
rpoC 766168 c.2799C>T synonymous_variant 0.19
rpoC 766174 p.Asn935Lys missense_variant 0.19
rpoC 766178 p.Ile937Val missense_variant 0.19
rpoC 766185 p.Glu939Ala missense_variant 0.19
rpoC 766189 c.2820T>C synonymous_variant 0.21
rpoC 766192 c.2823T>C synonymous_variant 0.21
rpoC 766193 p.Gln942Glu missense_variant 0.21
rpoC 766204 c.2835C>T synonymous_variant 0.23
rpoC 766207 c.2838T>C synonymous_variant 0.23
rpoC 766216 c.2847T>C synonymous_variant 0.23
rpoC 766219 p.Asp950Glu missense_variant 0.23
rpoC 766222 c.2853T>C synonymous_variant 0.23
rpoC 766226 c.2857T>C synonymous_variant 0.23
rpoC 766231 c.2862T>G synonymous_variant 0.23
rpoC 766234 c.2865T>C synonymous_variant 0.25
rpoC 766237 c.2868T>C synonymous_variant 0.23
rpoC 766240 c.2871T>C synonymous_variant 0.23
rpoC 766243 c.2874C>G synonymous_variant 0.21
rpoC 766258 c.2889T>C synonymous_variant 0.26
rpoC 766273 c.2904T>C synonymous_variant 0.22
rpoC 766274 p.Ala969Thr missense_variant 0.22
rpoC 766280 p.Ser971Gly missense_variant 0.23
rpoC 766288 c.2919C>G synonymous_variant 0.19
rpoC 766303 c.2934C>T synonymous_variant 0.15
rpoC 766327 c.2958C>A synonymous_variant 0.17
rpoC 766345 c.2976T>C synonymous_variant 0.17
rpoC 766348 c.2979A>G synonymous_variant 0.17
rpoC 766357 c.2988C>T synonymous_variant 0.21
rpoC 766363 c.2994G>C synonymous_variant 0.22
rpoC 766381 c.3012C>T synonymous_variant 0.21
rpoC 766384 c.3015A>G synonymous_variant 0.21
rpoC 766408 c.3039C>G synonymous_variant 0.17
rpoC 766411 c.3042C>G synonymous_variant 0.17
rpoC 766426 c.3057C>T synonymous_variant 0.17
rpoC 766630 c.3261G>C synonymous_variant 0.17
rpoC 766657 c.3288A>G synonymous_variant 0.19
rpoC 766672 c.3303T>C synonymous_variant 0.21
rpoC 766673 p.Gly1102Asn missense_variant 0.21
rpoC 766726 c.3357T>C synonymous_variant 0.21
rpoC 766738 c.3369G>C synonymous_variant 0.17
rpoC 766765 c.3396A>C synonymous_variant 0.21
rpoC 766774 c.3405T>C synonymous_variant 0.23
rpoC 766801 c.3432C>G synonymous_variant 0.23
rpoC 766804 c.3435A>G synonymous_variant 0.23
rpoC 766861 c.3492G>C synonymous_variant 0.22
rpoC 766864 c.3495G>C synonymous_variant 0.22
rpoC 766933 c.3564A>G synonymous_variant 0.19
rpoC 766945 c.3576A>G synonymous_variant 0.19
rpoC 766963 c.3594T>C synonymous_variant 0.17
rpoC 767033 p.Ser1222Thr missense_variant 0.14
rpoC 767062 c.3693C>A synonymous_variant 0.17
rpoC 767098 c.3729T>C synonymous_variant 0.21
rpoC 767119 c.3750A>G synonymous_variant 0.17
rpoC 767134 c.3765C>A synonymous_variant 0.17
rpoC 767158 c.3789T>C synonymous_variant 0.17
rpoC 767180 p.Ala1271Gln missense_variant 0.17
rpoC 767191 c.3822C>G synonymous_variant 0.17
rpoC 767206 c.3837C>G synonymous_variant 0.21
rpoC 767209 c.3840T>C synonymous_variant 0.17
rpoC 767212 c.3843G>C synonymous_variant 0.17
rpoC 767221 c.3852C>G synonymous_variant 0.16
rpoC 767230 c.3861G>C synonymous_variant 0.18
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776656 p.Gly609Arg missense_variant 0.42
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781649 c.90T>C synonymous_variant 0.18
rpsL 781655 c.96T>C synonymous_variant 0.17
rpsL 781682 c.123T>C synonymous_variant 0.2
rpsL 781700 c.141G>C synonymous_variant 0.2
rpsL 781703 c.144G>T synonymous_variant 0.21
rpsL 781715 c.156T>C synonymous_variant 0.22
rpsL 781728 c.169T>C synonymous_variant 0.22
rpsL 781736 c.177T>C synonymous_variant 0.26
rpsL 781742 c.183C>T synonymous_variant 0.25
rpsL 781748 c.189C>G synonymous_variant 0.23
rpsL 781754 c.195G>C synonymous_variant 0.22
rpsL 781760 c.201T>C synonymous_variant 0.22
rpsL 781772 c.213C>A synonymous_variant 0.19
rpsL 781808 c.249C>T synonymous_variant 0.23
rpsL 781811 c.252C>T synonymous_variant 0.23
rpsL 781832 c.273T>C synonymous_variant 0.24
rpsL 781838 c.279G>C synonymous_variant 0.22
rpsL 781841 c.282C>G synonymous_variant 0.24
rpsL 781865 c.306G>C synonymous_variant 0.22
rpsL 781868 c.309T>C synonymous_variant 0.22
rpsL 781871 c.312G>C synonymous_variant 0.23
rpsL 781877 c.318T>C synonymous_variant 0.23
rpsL 781892 c.333A>G synonymous_variant 0.21
rpsL 781898 c.339A>T synonymous_variant 0.26
rpsL 781916 c.357T>C synonymous_variant 0.28
rpsL 781929 p.Gly124Ser missense_variant 0.3
rplC 800715 c.-94A>C upstream_gene_variant 0.2
rplC 800720 c.-89T>C upstream_gene_variant 0.23
rplC 800723 c.-86C>G upstream_gene_variant 0.23
rplC 800747 c.-62C>G upstream_gene_variant 0.22
rplC 800771 c.-38C>T upstream_gene_variant 0.19
rplC 800814 c.6A>G synonymous_variant 0.2
rplC 800817 c.9A>T synonymous_variant 0.2
rplC 800844 c.36T>C synonymous_variant 0.17
rplC 800874 c.66A>G synonymous_variant 0.16
rplC 800875 p.Val23Ile missense_variant 0.16
rplC 800889 c.81C>G synonymous_variant 0.18
rplC 800892 c.84G>C synonymous_variant 0.17
rplC 801367 p.Ala187Thr missense_variant 0.18
rplC 801402 c.594T>C synonymous_variant 0.22
rplC 801405 c.597T>C synonymous_variant 0.22
rplC 801423 c.615G>C synonymous_variant 0.18
rplC 801426 c.618C>G synonymous_variant 0.18
rplC 801427 p.Met207Val missense_variant 0.2
rplC 801438 c.630T>C synonymous_variant 0.19
rplC 801442 p.Ile212Val missense_variant 0.2
fbiC 1303654 c.724C>T synonymous_variant 0.16
fbiC 1303659 c.729T>C synonymous_variant 0.16
fbiC 1303661 p.Val244Ala missense_variant 0.16
fbiC 1303663 c.733C>T synonymous_variant 0.16
fbiC 1303671 c.741C>T synonymous_variant 0.15
fbiC 1303681 c.751T>C synonymous_variant 0.17
fbiC 1303686 c.756C>G synonymous_variant 0.19
fbiC 1303695 c.765T>C synonymous_variant 0.22
fbiC 1303704 c.774T>C synonymous_variant 0.25
fbiC 1303708 c.778T>C synonymous_variant 0.25
fbiC 1303728 c.798G>A synonymous_variant 0.23
fbiC 1303731 c.801A>C synonymous_variant 0.22
fbiC 1303732 p.Ser268Ala missense_variant 0.22
fbiC 1303737 c.807G>A synonymous_variant 0.22
fbiC 1303746 c.816T>C synonymous_variant 0.2
fbiC 1303749 c.819G>C synonymous_variant 0.2
fbiC 1303752 c.822A>G synonymous_variant 0.17
fbiC 1303755 c.825T>C synonymous_variant 0.21
fbiC 1303761 c.831T>C synonymous_variant 0.21
fbiC 1303785 c.855G>C synonymous_variant 0.21
fbiC 1303789 p.Ile287Val missense_variant 0.17
fbiC 1303797 c.867A>G synonymous_variant 0.18
fbiC 1303818 c.888C>G synonymous_variant 0.19
fbiC 1303836 c.906G>C synonymous_variant 0.19
fbiC 1303845 c.915C>G synonymous_variant 0.19
fbiC 1303846 p.Phe306Val missense_variant 0.19
fbiC 1303854 c.924T>C synonymous_variant 0.22
fbiC 1303860 c.930A>C synonymous_variant 0.23
fbiC 1303884 c.954T>G synonymous_variant 0.18
fbiC 1303980 c.1050G>A synonymous_variant 0.13
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472044 n.199G>T non_coding_transcript_exon_variant 0.14
rrs 1472045 n.200T>A non_coding_transcript_exon_variant 0.14
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.16
rrs 1473105 n.1260G>A non_coding_transcript_exon_variant 0.17
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.16
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.16
rrl 1473756 n.99G>A non_coding_transcript_exon_variant 0.15
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.15
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.2
rrl 1473877 n.220G>A non_coding_transcript_exon_variant 0.24
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.26
rrl 1473943 n.286G>T non_coding_transcript_exon_variant 0.21
rrl 1473945 n.288T>A non_coding_transcript_exon_variant 0.21
rrl 1473946 n.289A>T non_coding_transcript_exon_variant 0.21
rrl 1473986 n.329T>C non_coding_transcript_exon_variant 0.22
rrl 1473987 n.330G>A non_coding_transcript_exon_variant 0.23
rrl 1473995 n.338G>T non_coding_transcript_exon_variant 0.24
rrl 1474001 n.344C>T non_coding_transcript_exon_variant 0.44
rrl 1474009 n.352A>G non_coding_transcript_exon_variant 0.18
rrl 1474012 n.355C>T non_coding_transcript_exon_variant 0.18
rrl 1474093 n.436G>T non_coding_transcript_exon_variant 0.16
rrl 1474099 n.442G>A non_coding_transcript_exon_variant 0.15
rrl 1474103 n.446A>T non_coding_transcript_exon_variant 0.15
rrl 1474639 n.982G>A non_coding_transcript_exon_variant 0.23
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.26
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.29
rrl 1474823 n.1166C>T non_coding_transcript_exon_variant 0.35
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 0.35
rrl 1474904 n.1247G>A non_coding_transcript_exon_variant 0.28
rrl 1474963 n.1306G>T non_coding_transcript_exon_variant 0.14
rrl 1474964 n.1307T>A non_coding_transcript_exon_variant 0.14
rrl 1474970 n.1313G>A non_coding_transcript_exon_variant 0.17
rrl 1475006 n.1349A>T non_coding_transcript_exon_variant 0.14
rrl 1475088 n.1431A>T non_coding_transcript_exon_variant 0.15
rrl 1475199 n.1542G>A non_coding_transcript_exon_variant 0.19
rrl 1475206 n.1549C>T non_coding_transcript_exon_variant 0.21
rrl 1475209 n.1552G>C non_coding_transcript_exon_variant 0.21
rrl 1475213 n.1556C>T non_coding_transcript_exon_variant 0.2
rrl 1475249 n.1592T>C non_coding_transcript_exon_variant 0.19
rrl 1475252 n.1595C>T non_coding_transcript_exon_variant 0.19
rrl 1475266 n.1609T>C non_coding_transcript_exon_variant 0.18
rrl 1475267 n.1610G>A non_coding_transcript_exon_variant 0.21
rrl 1475275 n.1618C>T non_coding_transcript_exon_variant 0.19
rrl 1475276 n.1619T>C non_coding_transcript_exon_variant 0.19
rrl 1475291 n.1634A>C non_coding_transcript_exon_variant 0.16
rrl 1475315 n.1658A>T non_coding_transcript_exon_variant 0.2
rrl 1475355 n.1698C>T non_coding_transcript_exon_variant 0.28
rrl 1475369 n.1712G>T non_coding_transcript_exon_variant 0.23
rrl 1475402 n.1745C>T non_coding_transcript_exon_variant 0.27
rrl 1475419 n.1762C>T non_coding_transcript_exon_variant 0.31
rrl 1475429 n.1772G>A non_coding_transcript_exon_variant 0.32
rrl 1475436 n.1779C>T non_coding_transcript_exon_variant 0.33
rrl 1475483 n.1826C>T non_coding_transcript_exon_variant 0.24
rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 0.26
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.31
rrl 1475599 n.1942A>G non_coding_transcript_exon_variant 0.24
rrl 1475608 n.1951T>C non_coding_transcript_exon_variant 0.24
rrl 1475642 n.1985T>C non_coding_transcript_exon_variant 0.23
rrl 1475657 n.2000A>G non_coding_transcript_exon_variant 0.21
rrl 1475659 n.2002G>T non_coding_transcript_exon_variant 0.21
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.24
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.31
rrl 1476031 n.2374C>T non_coding_transcript_exon_variant 0.34
rrl 1476032 n.2375C>A non_coding_transcript_exon_variant 0.34
rrl 1476033 n.2376T>C non_coding_transcript_exon_variant 0.34
rrl 1476034 n.2377C>A non_coding_transcript_exon_variant 0.34
rrl 1476045 n.2388G>T non_coding_transcript_exon_variant 0.35
rrl 1476047 n.2390G>T non_coding_transcript_exon_variant 0.35
rrl 1476048 n.2391G>A non_coding_transcript_exon_variant 0.35
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.35
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 0.28
rrl 1476089 n.2432T>C non_coding_transcript_exon_variant 0.3
rrl 1476095 n.2438C>G non_coding_transcript_exon_variant 0.29
rrl 1476108 n.2451T>C non_coding_transcript_exon_variant 0.27
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.26
rrl 1476117 n.2460G>C non_coding_transcript_exon_variant 0.26
rrl 1476214 n.2557G>A non_coding_transcript_exon_variant 0.2
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.22
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.17
rrl 1476583 n.2926G>A non_coding_transcript_exon_variant 0.21
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.21
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 0.29
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.22
rrl 1476603 n.2946G>A non_coding_transcript_exon_variant 0.28
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.26
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.21
rrl 1476689 n.3032A>T non_coding_transcript_exon_variant 0.21
rrl 1476690 n.3033C>T non_coding_transcript_exon_variant 0.21
rrl 1476693 n.3036G>A non_coding_transcript_exon_variant 0.21
rrl 1476695 n.3038T>A non_coding_transcript_exon_variant 0.21
rrl 1476716 n.3059A>C non_coding_transcript_exon_variant 0.16
inhA 1674114 c.-88T>A upstream_gene_variant 0.18
inhA 1674123 c.-79T>C upstream_gene_variant 0.2
inhA 1674126 c.-76G>C upstream_gene_variant 0.21
inhA 1674132 c.-70T>C upstream_gene_variant 0.18
fabG1 1674136 p.Ser233Ala missense_variant 0.19
inhA 1674141 c.-61T>C upstream_gene_variant 0.18
inhA 1674352 p.Thr51Ala missense_variant 0.14
inhA 1674368 p.Ala56Glu missense_variant 0.15
inhA 1674375 c.174C>G synonymous_variant 0.15
inhA 1674382 p.Leu61Ile missense_variant 0.17
inhA 1674387 c.186A>G synonymous_variant 0.17
inhA 1674399 c.198A>G synonymous_variant 0.2
inhA 1674428 p.Gly76Asp missense_variant 0.18
inhA 1674438 c.237C>G synonymous_variant 0.18
inhA 1674440 p.Glu80Ala missense_variant 0.18
inhA 1674443 p.Ala81Glu missense_variant 0.18
inhA 1674450 c.249G>C synonymous_variant 0.17
inhA 1674452 p.Ala84Asp missense_variant 0.17
inhA 1674471 c.270G>C synonymous_variant 0.33
inhA 1674480 c.279T>C synonymous_variant 0.36
inhA 1674486 c.285T>C synonymous_variant 0.36
inhA 1674504 c.303C>G synonymous_variant 0.5
inhA 1674507 c.306G>C synonymous_variant 0.44
inhA 1674537 c.336C>G synonymous_variant 0.38
inhA 1674542 p.Ala114Glu missense_variant 0.33
inhA 1674546 c.345T>C synonymous_variant 0.3
inhA 1674549 c.348G>C synonymous_variant 0.27
inhA 1674555 c.354G>A synonymous_variant 0.33
inhA 1674561 c.360C>T synonymous_variant 0.33
inhA 1674582 c.381T>C synonymous_variant 0.36
inhA 1674585 c.384T>C synonymous_variant 0.4
inhA 1674589 p.Met130Leu missense_variant 0.4
inhA 1674601 p.Leu134Thr missense_variant 0.38
inhA 1674624 c.423A>C synonymous_variant 0.25
inhA 1674660 c.459G>C synonymous_variant 0.29
inhA 1674672 c.471C>G synonymous_variant 0.25
inhA 1674703 c.502T>C synonymous_variant 0.29
inhA 1674708 c.507G>A synonymous_variant 0.25
rpsA 1833595 c.54T>C synonymous_variant 0.16
rpsA 1833724 c.183C>G synonymous_variant 0.18
rpsA 1833727 c.186G>C synonymous_variant 0.18
rpsA 1833811 c.270G>T synonymous_variant 0.14
rpsA 1833847 c.306C>G synonymous_variant 0.18
rpsA 1833856 c.315A>G synonymous_variant 0.17
rpsA 1833928 c.387G>C synonymous_variant 0.21
rpsA 1833940 c.399C>G synonymous_variant 0.23
rpsA 1833971 c.430C>T synonymous_variant 0.21
rpsA 1833979 c.438T>C synonymous_variant 0.21
rpsA 1834000 c.459G>C synonymous_variant 0.22
rpsA 1834021 c.480C>T synonymous_variant 0.24
rpsA 1834030 c.489C>G synonymous_variant 0.23
rpsA 1834099 c.558C>G synonymous_variant 0.23
rpsA 1834102 c.561T>C synonymous_variant 0.25
rpsA 1834105 c.564C>G synonymous_variant 0.25
rpsA 1834108 c.567C>G synonymous_variant 0.25
rpsA 1834123 c.582C>G synonymous_variant 0.24
rpsA 1834150 c.609G>C synonymous_variant 0.15
rpsA 1834169 p.Thr210Ala missense_variant 0.17
rpsA 1834177 c.636A>C synonymous_variant 0.17
rpsA 1834189 c.648G>C synonymous_variant 0.18
rpsA 1834195 c.654G>C synonymous_variant 0.19
rpsA 1834210 c.669C>T synonymous_variant 0.19
rpsA 1834222 c.681T>C synonymous_variant 0.21
rpsA 1834231 c.690T>C synonymous_variant 0.19
rpsA 1834234 c.693G>C synonymous_variant 0.19
rpsA 1834249 c.708T>C synonymous_variant 0.2
rpsA 1834261 c.720A>G synonymous_variant 0.17
rpsA 1834262 c.721_723delTCGinsAGC synonymous_variant 0.18
rpsA 1834303 c.762T>C synonymous_variant 0.21
rpsA 1834306 c.765T>C synonymous_variant 0.21
rpsA 1834348 c.807T>C synonymous_variant 0.19
rpsA 1834366 c.825A>G synonymous_variant 0.2
rpsA 1834396 c.855G>C synonymous_variant 0.22
rpsA 1834411 c.870T>C synonymous_variant 0.23
rpsA 1834417 c.876G>C synonymous_variant 0.22
rpsA 1834423 c.882G>C synonymous_variant 0.24
rpsA 1834435 c.894G>C synonymous_variant 0.25
rpsA 1834451 c.910T>C synonymous_variant 0.25
rpsA 1834465 c.924T>C synonymous_variant 0.3
rpsA 1834468 c.927A>G synonymous_variant 0.29
rpsA 1834489 c.948T>C synonymous_variant 0.25
rpsA 1834528 c.987T>C synonymous_variant 0.2
rpsA 1834540 c.999G>C synonymous_variant 0.23
rpsA 1834546 c.1005T>C synonymous_variant 0.23
rpsA 1834609 c.1068T>C synonymous_variant 0.21
rpsA 1834633 c.1092A>G synonymous_variant 0.22
rpsA 1834639 c.1098T>C synonymous_variant 0.22
rpsA 1834654 p.Glu371Asp missense_variant 0.25
rpsA 1834684 c.1143C>T synonymous_variant 0.27
rpsA 1834690 c.1149T>C synonymous_variant 0.26
rpsA 1834732 c.1191T>C synonymous_variant 0.31
rpsA 1834733 p.Ala398Ser missense_variant 0.31
rpsA 1834738 c.1197A>G synonymous_variant 0.31
rpsA 1834753 c.1212T>C synonymous_variant 0.33
rpsA 1834765 p.Glu408Asp missense_variant 0.27
rpsA 1834775 p.Ala412Thr missense_variant 0.29
rpsA 1834780 c.1239A>G synonymous_variant 0.29
rpsA 1834786 c.1245A>G synonymous_variant 0.28
rpsA 1834789 c.1248T>C synonymous_variant 0.25
rpsA 1834792 c.1251G>C synonymous_variant 0.25
tlyA 1917972 c.33A>G synonymous_variant 1.0
tlyA 1918389 c.450G>C synonymous_variant 0.17
tlyA 1918392 c.453A>C synonymous_variant 0.17
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2518076 c.-39C>T upstream_gene_variant 0.68
kasA 2518146 p.Phe11Tyr missense_variant 0.16
kasA 2518657 c.543G>C synonymous_variant 0.17
kasA 2518672 c.558G>C synonymous_variant 0.17
kasA 2518678 c.564C>T synonymous_variant 0.14
kasA 2518684 c.570C>G synonymous_variant 0.19
kasA 2518693 c.579C>G synonymous_variant 0.18
kasA 2518696 c.582C>G synonymous_variant 0.17
kasA 2518699 c.585C>T synonymous_variant 0.17
kasA 2518702 c.588C>T synonymous_variant 0.17
kasA 2518705 c.591T>C synonymous_variant 0.18
kasA 2518711 c.597A>G synonymous_variant 0.2
kasA 2518714 c.600A>C synonymous_variant 0.2
kasA 2518732 c.618C>G synonymous_variant 0.24
kasA 2518744 c.630C>T synonymous_variant 0.23
kasA 2518747 c.633C>G synonymous_variant 0.23
kasA 2518768 c.654C>T synonymous_variant 0.18
kasA 2518777 c.663C>T synonymous_variant 0.17
ribD 2986827 c.-12G>A upstream_gene_variant 0.91
Rv2752c 3064995 c.1197C>G synonymous_variant 0.16
Rv2752c 3064998 c.1194A>G synonymous_variant 0.19
Rv2752c 3065007 c.1185G>C synonymous_variant 0.23
Rv2752c 3065013 c.1179G>C synonymous_variant 0.21
Rv2752c 3065018 p.Asn392His missense_variant 0.25
Rv2752c 3065028 p.Val388Ile missense_variant 0.21
Rv2752c 3065040 c.1152C>G synonymous_variant 0.26
Rv2752c 3065048 c.1144C>T synonymous_variant 0.29
Rv2752c 3065052 c.1140G>A synonymous_variant 0.29
Rv2752c 3065055 c.1137T>C synonymous_variant 0.3
Rv2752c 3065064 c.1128G>C synonymous_variant 0.24
Rv2752c 3065073 c.1119C>G synonymous_variant 0.25
Rv2752c 3065079 c.1113T>C synonymous_variant 0.25
Rv2752c 3065082 c.1110G>C synonymous_variant 0.25
Rv2752c 3065085 c.1105_1107delAGGinsCGC synonymous_variant 0.25
Rv2752c 3065088 c.1104A>G synonymous_variant 0.24
Rv2752c 3065109 c.1081_1083delAGAinsCGC synonymous_variant 0.21
Rv2752c 3065451 c.741G>A synonymous_variant 0.14
Rv2752c 3065463 c.729T>C synonymous_variant 0.16
Rv2752c 3065520 c.672G>C synonymous_variant 0.16
Rv2752c 3065535 c.657C>T synonymous_variant 0.15
Rv2752c 3065544 c.648C>T synonymous_variant 0.16
Rv2752c 3065553 c.639A>G synonymous_variant 0.16
Rv2752c 3065562 c.630T>C synonymous_variant 0.16
Rv2752c 3065569 p.Ile208His missense_variant 0.16
Rv2752c 3065580 c.612G>C synonymous_variant 0.16
Rv2752c 3065586 c.606C>T synonymous_variant 0.16
Rv2752c 3065595 p.Leu199Phe missense_variant 0.16
Rv2752c 3065598 c.594G>T synonymous_variant 0.16
Rv2752c 3066290 c.-99G>A upstream_gene_variant 0.15
Rv2752c 3066315 c.-124C>T upstream_gene_variant 0.15
thyX 3067475 c.471A>G synonymous_variant 0.17
thyX 3067490 c.456C>G synonymous_variant 0.17
thyX 3067545 p.Glu134Ala missense_variant 0.24
thyX 3067549 p.Thr133Ala missense_variant 0.24
thyX 3067556 p.His130Gln missense_variant 0.25
thyX 3067559 c.387C>G synonymous_variant 0.26
thyX 3067565 p.Asp127Glu missense_variant 0.26
thyX 3067570 p.Ala126Pro missense_variant 0.26
thyX 3067577 c.369G>A synonymous_variant 0.23
thyX 3067601 p.Arg115His missense_variant 0.21
thyX 3067611 p.Lys112Thr missense_variant 0.21
thyX 3067619 c.327A>C synonymous_variant 0.19
thyX 3067631 c.315C>G synonymous_variant 0.2
thyX 3067634 c.312C>G synonymous_variant 0.2
thyX 3067652 c.294T>C synonymous_variant 0.24
thyX 3067661 c.285C>G synonymous_variant 0.24
thyX 3067685 c.261A>C synonymous_variant 0.21
thyX 3067691 p.Ile85Leu missense_variant 0.21
thyX 3067694 c.252G>C synonymous_variant 0.21
thyX 3067718 c.228C>G synonymous_variant 0.26
thyX 3067721 c.225T>C synonymous_variant 0.26
thyX 3067727 c.219A>C synonymous_variant 0.25
thyX 3067736 p.Phe70Leu missense_variant 0.26
thyX 3067739 c.207T>C synonymous_variant 0.26
thyX 3067761 p.Arg62Lys missense_variant 0.28
thyX 3067765 p.Leu61Ile missense_variant 0.28
thyX 3067772 c.174C>G synonymous_variant 0.28
thyX 3067781 c.165C>G synonymous_variant 0.29
thyX 3067793 c.153T>C synonymous_variant 0.26
thyX 3067799 c.147G>A synonymous_variant 0.22
thyX 3067802 c.144C>G synonymous_variant 0.22
thyX 3067814 c.132T>C synonymous_variant 0.19
thyA 3073989 c.483T>C synonymous_variant 0.14
thyA 3074004 c.468T>C synonymous_variant 0.15
thyA 3074010 c.462C>G synonymous_variant 0.17
thyA 3074031 c.441T>C synonymous_variant 0.16
thyA 3074037 c.435C>G synonymous_variant 0.17
thyA 3074053 p.Arg140Gln missense_variant 0.17
thyA 3074055 p.Glu139Pro missense_variant 0.16
thyA 3074061 c.411A>G synonymous_variant 0.17
thyA 3074079 c.393G>C synonymous_variant 0.19
thyA 3074100 c.372T>C synonymous_variant 0.15
thyA 3074106 c.366T>C synonymous_variant 0.15
thyA 3074127 c.345G>C synonymous_variant 0.16
thyA 3074130 c.342G>C synonymous_variant 0.17
thyA 3074440 p.Val11Ala missense_variant 0.22
ald 3086788 c.-32T>C upstream_gene_variant 0.58
fprA 3473996 c.-11_-10insA upstream_gene_variant 0.63
fprA 3474222 c.216G>A synonymous_variant 0.16
fprA 3474225 c.219C>T synonymous_variant 0.16
fprA 3474231 c.225C>G synonymous_variant 0.16
fprA 3474237 c.231C>T synonymous_variant 0.16
fprA 3474249 c.243T>C synonymous_variant 0.17
fprA 3474252 c.246G>C synonymous_variant 0.17
fprA 3474253 p.Val83Ser missense_variant 0.17
fprA 3474270 c.264C>G synonymous_variant 0.15
fprA 3474273 c.267G>A synonymous_variant 0.15
fprA 3474277 p.Gly91Ser missense_variant 0.15
alr 3840764 c.657G>C synonymous_variant 0.3
rpoA 3877571 p.Pro313Ala missense_variant 0.18
rpoA 3877587 c.921A>G synonymous_variant 0.16
rpoA 3877613 p.Ile299Val missense_variant 0.19
rpoA 3877656 c.852T>G synonymous_variant 0.23
rpoA 3877668 c.840A>G synonymous_variant 0.23
rpoA 3877679 p.Ala277Ser missense_variant 0.23
rpoA 3877686 c.822A>G synonymous_variant 0.23
rpoA 3877692 c.816G>C synonymous_variant 0.24
rpoA 3877704 c.804G>C synonymous_variant 0.25
rpoA 3877743 c.765T>C synonymous_variant 0.19
rpoA 3877764 c.744C>G synonymous_variant 0.17
rpoA 3877770 c.738A>G synonymous_variant 0.17
rpoA 3877776 c.732T>C synonymous_variant 0.21
rpoA 3877782 c.726T>C synonymous_variant 0.18
rpoA 3877791 c.717C>G synonymous_variant 0.19
rpoA 3877818 c.690A>G synonymous_variant 0.17
rpoA 3877839 c.669G>C synonymous_variant 0.18
rpoA 3877848 c.660C>T synonymous_variant 0.21
rpoA 3877857 c.651G>A synonymous_variant 0.21
rpoA 3877866 c.642G>C synonymous_variant 0.21
rpoA 3877875 c.633T>G synonymous_variant 0.18
rpoA 3877878 c.630G>C synonymous_variant 0.18
rpoA 3877890 c.618C>T synonymous_variant 0.2
rpoA 3877896 c.612G>C synonymous_variant 0.19
rpoA 3877900 p.Ser203Asn missense_variant 0.2
rpoA 3877905 c.603A>G synonymous_variant 0.2
rpoA 3877909 p.Asn200Ser missense_variant 0.19
rpoA 3877920 c.588G>C synonymous_variant 0.19
rpoA 3877923 c.585C>T synonymous_variant 0.19
rpoA 3877926 c.582G>C synonymous_variant 0.19
rpoA 3877962 c.546G>T synonymous_variant 0.16
rpoA 3877986 c.522G>C synonymous_variant 0.29
rpoA 3877989 c.519A>G synonymous_variant 0.32
rpoA 3878001 c.507A>G synonymous_variant 0.3
rpoA 3878022 c.486T>C synonymous_variant 0.3
rpoA 3878028 c.480G>C synonymous_variant 0.23
rpoA 3878031 c.477T>C synonymous_variant 0.23
rpoA 3878040 c.468T>C synonymous_variant 0.27
rpoA 3878043 c.465G>A synonymous_variant 0.27
rpoA 3878055 c.453A>G synonymous_variant 0.26
rpoA 3878058 c.450G>T synonymous_variant 0.26
rpoA 3878061 c.447G>C synonymous_variant 0.26
rpoA 3878067 c.441C>G synonymous_variant 0.25
rpoA 3878070 c.438T>C synonymous_variant 0.25
rpoA 3878076 c.432C>T synonymous_variant 0.28
rpoA 3878082 c.426T>G synonymous_variant 0.27
rpoA 3878094 c.414C>G synonymous_variant 0.24
rpoA 3878103 c.405A>G synonymous_variant 0.23
rpoA 3878106 c.402G>C synonymous_variant 0.22
rpoA 3878118 c.390T>C synonymous_variant 0.21
rpoA 3878130 c.378C>G synonymous_variant 0.21
rpoA 3878141 p.Met123Leu missense_variant 0.21
rpoA 3878143 p.Gly122Asp missense_variant 0.21
rpoA 3878157 c.351C>G synonymous_variant 0.24
rpoA 3878163 c.345C>T synonymous_variant 0.24
rpoA 3878169 c.339G>C synonymous_variant 0.28
rpoA 3878172 c.336G>C synonymous_variant 0.28
rpoA 3878181 c.327C>T synonymous_variant 0.28
rpoA 3878187 c.321C>G synonymous_variant 0.26
rpoA 3878193 c.315T>C synonymous_variant 0.26
rpoA 3878199 c.309T>C synonymous_variant 0.28
rpoA 3878217 c.291A>G synonymous_variant 0.29
rpoA 3878226 c.282C>G synonymous_variant 0.3
rpoA 3878232 c.276G>C synonymous_variant 0.33
rpoA 3878247 c.261G>C synonymous_variant 0.33
rpoA 3878271 c.237T>C synonymous_variant 0.37
rpoA 3878284 p.Glu75Ala missense_variant 0.36
rpoA 3878292 c.216T>C synonymous_variant 0.38
rpoA 3878298 c.210A>G synonymous_variant 0.37
rpoA 3878304 c.204G>C synonymous_variant 0.38
rpoA 3878313 c.195G>C synonymous_variant 0.38
rpoA 3878322 c.186A>G synonymous_variant 0.38
rpoA 3878331 c.177A>G synonymous_variant 0.35
rpoA 3878334 c.174T>C synonymous_variant 0.35
rpoA 3878337 c.171T>C synonymous_variant 0.38
rpoA 3878340 c.168C>T synonymous_variant 0.43
rpoA 3878346 c.162T>C synonymous_variant 0.44
rpoA 3878364 c.144A>T synonymous_variant 0.54
rpoA 3878367 c.141C>G synonymous_variant 0.52
rpoA 3878376 c.132G>C synonymous_variant 0.52
rpoA 3878385 c.123C>G synonymous_variant 0.52
rpoA 3878388 c.120C>G synonymous_variant 0.55
rpoA 3878391 c.117T>C synonymous_variant 0.55
rpoA 3878415 c.93C>T synonymous_variant 0.53
rpoA 3878424 c.84G>C synonymous_variant 0.41
rpoA 3878436 c.72A>G synonymous_variant 0.33
rpoA 3878442 c.66G>C synonymous_variant 0.36
rpoA 3878454 c.54A>C synonymous_variant 0.31
rpoA 3878472 p.Asp12Glu missense_variant 0.25
rpoA 3878478 c.30C>G synonymous_variant 0.25
clpC1 4039226 c.1479T>C synonymous_variant 0.2
clpC1 4039229 c.1476C>G synonymous_variant 0.2
clpC1 4039274 c.1431G>C synonymous_variant 0.21
clpC1 4039286 c.1419T>C synonymous_variant 0.2
clpC1 4039295 c.1410A>C synonymous_variant 0.2
clpC1 4039298 c.1407T>C synonymous_variant 0.2
clpC1 4039319 c.1386T>C synonymous_variant 0.19
clpC1 4039322 c.1383T>C synonymous_variant 0.17
clpC1 4039328 c.1377A>C synonymous_variant 0.17
clpC1 4039331 c.1374C>G synonymous_variant 0.17
clpC1 4039337 p.Thr456Gln missense_variant 0.17
clpC1 4039349 c.1356C>T synonymous_variant 0.18
clpC1 4039352 c.1353C>G synonymous_variant 0.19
clpC1 4039364 c.1341C>G synonymous_variant 0.2
clpC1 4039391 c.1314T>G synonymous_variant 0.18
clpC1 4040036 c.669C>G synonymous_variant 0.16
clpC1 4040318 c.387C>G synonymous_variant 0.17
clpC1 4040330 c.375C>G synonymous_variant 0.17
clpC1 4040354 c.351A>G synonymous_variant 0.17
clpC1 4040363 c.342A>T synonymous_variant 0.17
clpC1 4040369 c.336C>G synonymous_variant 0.15
clpC1 4040381 c.324T>C synonymous_variant 0.17
clpC1 4040387 c.318A>G synonymous_variant 0.17
clpC1 4040393 c.312G>C synonymous_variant 0.16
embC 4240141 c.279A>G synonymous_variant 0.17
embC 4240789 c.927T>C synonymous_variant 0.16
embC 4240867 c.1005T>C synonymous_variant 0.17
embC 4240870 c.1008T>C synonymous_variant 0.16
embC 4240873 c.1011C>G synonymous_variant 0.16
embC 4240879 c.1017G>C synonymous_variant 0.16
embC 4240880 p.Ala340Thr missense_variant 0.16
embC 4240885 c.1023T>C synonymous_variant 0.15
embC 4240898 c.1036_1038delCTAinsTTG synonymous_variant 0.15
embC 4241017 c.1155T>C synonymous_variant 0.15
embC 4241023 c.1161T>G synonymous_variant 0.18
embC 4241032 c.1170G>C synonymous_variant 0.16
embC 4241089 c.1227C>G synonymous_variant 0.19
embC 4241095 c.1233C>T synonymous_variant 0.21
embC 4241107 c.1245G>C synonymous_variant 0.24
embC 4241140 c.1278A>G synonymous_variant 0.26
embC 4241146 c.1284C>G synonymous_variant 0.26
embC 4241158 c.1296T>C synonymous_variant 0.26
embC 4241161 c.1299C>G synonymous_variant 0.25
embC 4241162 c.1300T>C synonymous_variant 0.26
embC 4241170 c.1308G>C synonymous_variant 0.25
embC 4241173 c.1311C>T synonymous_variant 0.24
embC 4241203 c.1341T>C synonymous_variant 0.22
embC 4241206 c.1344G>C synonymous_variant 0.22
embC 4241218 c.1356G>C synonymous_variant 0.18
embC 4241233 c.1371G>C synonymous_variant 0.15
embC 4241501 p.Ser547Thr missense_variant 0.14
embC 4241521 c.1659T>C synonymous_variant 0.16
embC 4241530 c.1668C>A synonymous_variant 0.16
embC 4241539 c.1677T>C synonymous_variant 0.17
embC 4241551 c.1689A>G synonymous_variant 0.17
embC 4241567 p.Ile569Val missense_variant 0.17
embC 4241572 c.1710C>G synonymous_variant 0.18
embC 4241578 c.1716G>C synonymous_variant 0.18
embC 4241584 c.1722T>C synonymous_variant 0.18
embC 4241587 c.1725C>G synonymous_variant 0.18
embC 4241591 p.Leu577Val missense_variant 0.18
embC 4241611 c.1749G>C synonymous_variant 0.2
embC 4241614 c.1752A>C synonymous_variant 0.2
embC 4241626 c.1764T>C synonymous_variant 0.19
embC 4241644 c.1782G>C synonymous_variant 0.15
embC 4241650 p.Leu596Phe missense_variant 0.15
embC 4241657 p.Ser599Pro missense_variant 0.15
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embC 4242803 p.Val981Leu missense_variant 0.55
embA 4245137 c.1905T>C synonymous_variant 0.2
embA 4245146 c.1914G>A synonymous_variant 0.2
embA 4245149 c.1917C>G synonymous_variant 0.2
embA 4245153 p.Ile641Val missense_variant 0.21
embA 4245182 c.1950T>C synonymous_variant 0.2
embA 4245189 c.1957C>T synonymous_variant 0.21
embA 4245198 p.Leu656Ile missense_variant 0.24
embA 4245207 c.1975T>C synonymous_variant 0.25
embA 4245215 c.1983A>C synonymous_variant 0.25
embA 4245222 p.Tyr664Gln missense_variant 0.31
embA 4245248 c.2016G>C synonymous_variant 0.17
embA 4245257 c.2025A>G synonymous_variant 0.17
embA 4245263 c.2031A>G synonymous_variant 0.18
embA 4245282 p.Ile684Val missense_variant 0.15
embA 4245885 p.Asp885Asn missense_variant 0.14
embA 4245892 p.Ile887Thr missense_variant 0.14
embA 4245942 p.Arg904Ser missense_variant 0.17
embB 4247497 c.984T>C synonymous_variant 0.16
embB 4247512 c.999T>C synonymous_variant 0.17
embB 4247539 c.1026T>C synonymous_variant 0.16
embB 4247554 c.1041T>C synonymous_variant 0.16
embB 4247566 c.1053C>A synonymous_variant 0.15
embB 4247587 c.1074G>A synonymous_variant 0.15
embB 4247603 c.1090C>T synonymous_variant 0.2
embB 4247611 c.1098G>T synonymous_variant 0.17
embB 4247614 c.1101T>C synonymous_variant 0.17
embB 4247692 c.1179C>G synonymous_variant 0.14
embB 4247716 c.1203C>T synonymous_variant 0.18
embB 4247722 c.1209G>C synonymous_variant 0.15
embB 4247797 c.1284C>G synonymous_variant 0.21
embB 4247800 c.1287A>T synonymous_variant 0.21
embB 4247803 c.1290G>C synonymous_variant 0.21
embB 4247815 c.1302C>G synonymous_variant 0.22
embB 4247819 p.Val436Ile missense_variant 0.22
embB 4247830 c.1317A>C synonymous_variant 0.19
embB 4247836 c.1323A>G synonymous_variant 0.19
embB 4247839 c.1326G>C synonymous_variant 0.19
embB 4249417 c.2904A>G synonymous_variant 0.18
embB 4249423 p.Asp970Glu missense_variant 0.17
embB 4249424 p.Leu971Met missense_variant 0.15
embB 4249429 c.2916C>T synonymous_variant 0.17
embB 4249432 c.2919A>G synonymous_variant 0.17
embB 4249435 c.2922G>A synonymous_variant 0.18
embB 4249441 c.2928A>G synonymous_variant 0.18
embB 4249444 c.2931T>C synonymous_variant 0.25
embB 4249447 c.2934G>C synonymous_variant 0.29
embB 4249469 p.Leu986Met missense_variant 0.22
embB 4249486 c.2973T>G synonymous_variant 0.29
aftB 4268336 c.501C>T synonymous_variant 0.15
aftB 4269201 c.-365A>G upstream_gene_variant 0.18
aftB 4269206 c.-370C>T upstream_gene_variant 0.17
ubiA 4269220 p.Ala205Lys missense_variant 0.19
aftB 4269222 c.-386T>C upstream_gene_variant 0.19
aftB 4269242 c.-406C>T upstream_gene_variant 0.21
ubiA 4269243 p.His197Gln missense_variant 0.23
aftB 4269249 c.-413G>A upstream_gene_variant 0.23
aftB 4269258 c.-422C>T upstream_gene_variant 0.24
ubiA 4269285 p.Gly183Ala missense_variant 0.19
aftB 4269291 c.-455A>G upstream_gene_variant 0.19
aftB 4269300 c.-464G>C upstream_gene_variant 0.19
ubiA 4269312 p.Lys174Gln missense_variant 0.2
aftB 4269315 c.-479C>A upstream_gene_variant 0.2
ubiA 4269329 p.Lys169Glu missense_variant 0.21
aftB 4269342 c.-506G>C upstream_gene_variant 0.23
aftB 4269363 c.-527T>C upstream_gene_variant 0.15
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407650 p.Asp185Asn missense_variant 0.48