Rv3457c - c.327C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
5 Sensitive
1 RR-TB
9 HR-TB
4 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
65 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 14 |
| 15 | |
| lineage2.1;lineage4.9 | 8 |
| lineage4 | 2 |
| lineage2.2.2;lineage4 | 1 |
| lineage4.1.2.1 | 4 |
| lineage4.7 | 1 |
| La3;lineage4.9 | 2 |
| lineage2.2.1 | 6 |
| lineage2.1 | 1 |
| lineage4.1.1.3 | 3 |
| lineage4.8.1 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| lineage2.1;lineage4.9;lineage6.3 | 4 |
| La1.2.BCG;La1.8.1 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1.2 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage2.1;lineage6.3 | 2 |
| lineage4.1.3 | 2 |
| lineage4.1.1.1 | 2 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.9;lineage6.3 | 7 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage4.8 | 1 |
| lineage6.3.1 | 1 |
| La3;lineage2.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 86 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3675275 | Other | lineage4.9 | None | SRR18213713 | HR-TB | None | ERR4815604 | Other | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | SRR6789626 | Other | None | ERR2027263 | Other | lineage4 | None | ERR4797201 | Other | None | ERR4816999 | Other | None | SRR29093105 | Other | lineage2.2.2;lineage4 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR4819932 | Sensitive | lineage4.7 | None | SRR29017461 | Other | La3;lineage4.9 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | ERR3283044 | Other | lineage4 | None | SRR20969677 | HR-TB | lineage2.1 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR21728330 | Sensitive | lineage4.1.1.3 | None | SRR12708389 | MDR-TB | lineage4.8.1 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | SRR3675311 | Other | lineage4.9 | None | SRR3675221 | Other | lineage4.9 | None | ERR234659 | Other | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | SRR6046385 | Sensitive | lineage4.9 | None | SRR3675457 | Other | lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR4797054 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3797069 | Other | lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR7496517 | Other | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | SRR28119753 | Other | lineage4.9 | None | ERR9786515 | Other | lineage4.1.2.1 | None | SRR3675236 | Other | None | SRR28119777 | Other | lineage4.9 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | SRR7496509 | Other | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR7496472 | Other | lineage4.9 | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR3797070 | Other | lineage4.9 | None | SRR28119805 | Other | lineage4.9 | None | SRR6789621 | Other | lineage4.9 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR11049020 | Other | lineage4.8 | None | SRR29016901 | Other | La3;lineage4.9 | None | ERR4811105 | HR-TB | None | ERR4810741 | HR-TB | None | ERR4811075 | Other | None | ERR4811142 | RR-TB | None | SRR29093909 | Other | lineage4.9 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | SRR1165699 | Other | lineage4.9 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | ERR4816585 | Other | lineage2.2.1 | None | ERR9117709 | Other | None | SRR29055629 | MDR-TB | lineage2.2.1 | None | SRR28119811 | Other | lineage2.2.1 | None | SRR26937071 | MDR-TB | La3;lineage2.2.1 | None | SRR21728167 | Sensitive | lineage4.1.1.3 | None | SRR21728174 | Sensitive | lineage4.1.1.3 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR3675572 | Other | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None |
|---|
