Rv0005 - c.1029C>G
Drug resistance types
25 Sensitive
2 RR-TB
108 HR-TB
18 MDR-TB
9 Pre-XDR-TB
0 XDR-TB
102 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 18 |
| 116 | |
| lineage6.3;lineage2.2.1 | 1 |
| lineage4.1.1 | 1 |
| lineage4.1.1.3 | 1 |
| lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
| lineage2.1 | 3 |
| lineage1.2.1.1 | 1 |
| lineage4.1.2.1 | 9 |
| lineage4.9 | 23 |
| lineage4.3 | 1 |
| lineage4.8 | 4 |
| lineage4 | 28 |
| lineage4.4.1.1 | 2 |
| lineage2.2 | 6 |
| lineage4.8;La3 | 1 |
| lineage4.1.2 | 3 |
| La1.8.1 | 4 |
| lineage3.1.3 | 1 |
| lineage4.1.1.2 | 1 |
| lineage4.2.2.2 | 1 |
| lineage3 | 3 |
| lineage4.7 | 2 |
| lineage4.6.2.2 | 3 |
| lineage4.2.1 | 2 |
| lineage4.1 | 1 |
| La1 | 1 |
| lineage4.1.3 | 2 |
| lineage4;lineage3.1 | 1 |
| lineage2 | 3 |
| lineage1.1.2 | 2 |
| lineage1.2.2.2 | 1 |
| lineage4.6.1.1 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4.3.2 | 1 |
| lineage4.8;lineage4.1 | 1 |
| lineage6 | 1 |
| lineage6.3.1 | 1 |
| La3 | 1 |
| lineage4.3.3 | 3 |
| lineage3.1 | 2 |
| lineage1.2.1.2 | 1 |
| lineage4.5 | 1 |
| lineage4;lineage2.2 | 1 |
| lineage4.9;La3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 264 |
Geographic prevalence
Country level data for this variant is available for 1 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR28119741 | Pre-XDR-TB | lineage2.2.1 | None | ERR176779 | HR-TB | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | ERR4815604 | HR-TB | None | ERR176778 | HR-TB | None | SRR3675221 | HR-TB | None | ERR176793 | Other | lineage4.1.1 | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | SRR3675465 | HR-TB | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR3416776 | Other | lineage2.1 | None | ERR4814734 | Other | lineage1.2.1.1 | None | SRR3675236 | HR-TB | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR3675284 | HR-TB | lineage4.9 | None | SRR3675270 | HR-TB | None | ERR176568 | Other | lineage4.3 | None | ERR181887 | HR-TB | None | SRR3675456 | HR-TB | None | ERR176643 | HR-TB | None | SRR3675311 | Other | None | ERR176651 | HR-TB | None | ERR176751 | HR-TB | None | SRR3675572 | Other | None | ERR2229542 | Other | lineage4.8 | None | SRR3675510 | Other | None | ERR4816999 | Other | None | ERR2027263 | Other | lineage4 | None | ERR212001 | HR-TB | None | ERR4817037 | Other | lineage4.9 | None | SRR5341422 | HR-TB | lineage2.1 | None | ERR212033 | HR-TB | None | SRR3675555 | HR-TB | None | ERR4817060 | RR-TB | None | ERR212138 | HR-TB | lineage4 | None | ERR212125 | HR-TB | lineage4 | None | SRR3675574 | HR-TB | None | SRR3742665 | HR-TB | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4817735 | Other | lineage4.8 | None | ERR4816585 | Other | lineage2.2 | None | ERR502912 | Other | lineage2.2.1 | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR4818347 | Other | lineage4.1.2 | None | SRR7496472 | Other | None | ERR4818021 | Other | La1.8.1 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR234659 | HR-TB | None | ERR4818252 | Other | lineage4.1.1.2 | None | SRR5341432 | HR-TB | lineage4 | None | ERR2513470 | Other | lineage4.2.2.2 | None | ERR4818615 | Other | None | SRR5341373 | HR-TB | lineage4 | None | SRR5341400 | HR-TB | lineage4 | None | ERR2514692 | Other | None | SRR5341293 | HR-TB | lineage4 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341332 | Pre-XDR-TB | lineage3 | None | SRR5341315 | Sensitive | None | SRR5341302 | HR-TB | None | SRR5341313 | HR-TB | None | ERR4819932 | Other | lineage4.7 | None | SRR6045503 | HR-TB | None | SRR5341333 | HR-TB | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR4821655 | Sensitive | lineage4 | None | SRR6045526 | HR-TB | None | ERR2660539 | Other | lineage4.9 | None | SRR6045519 | HR-TB | None | SRR6044790 | HR-TB | None | SRR6045892 | Sensitive | None | SRR6044855 | Other | lineage4.9 | None | SRR6045158 | Other | lineage4.9 | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6045010 | Other | lineage4 | None | SRR6045053 | Other | None | SRR6046066 | HR-TB | None | SRR6046046 | Other | None | SRR6046305 | Other | lineage4.9 | None | SRR6045327 | HR-TB | None | SRR6046225 | HR-TB | None | SRR6046382 | HR-TB | lineage2.2.1 | None | SRR6046540 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6789626 | Other | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR4831546 | HR-TB | lineage2.2 | None | SRR6785262 | Sensitive | lineage4.2.1 | None | SRR6785263 | Sensitive | lineage2.2.1 | None | SRR6785268 | Sensitive | lineage4.2.1 | None | SRR6785267 | Other | lineage2.2.1 | None | SRR6785413 | Other | lineage2.2.1 | None | SRR6789624 | MDR-TB | lineage4.1 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | ERR502532 | HR-TB | None | SRR7496509 | Other | None | SRR7496517 | Other | None | SRR7496523 | Other | lineage4.7 | None | ERR502908 | HR-TB | lineage2.2.1 | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR7535086 | Other | None | SRR7585435 | Other | lineage4.9 | None | ERR323043 | HR-TB | None | ERR323115 | Sensitive | lineage4 | None | ERR323107 | Other | lineage4 | None | ERR323108 | HR-TB | lineage4 | None | ERR108471 | HR-TB | lineage4 | None | ERR1035157 | Other | lineage4.9 | None | ERR1063859 | HR-TB | None | ERR3445503 | HR-TB | None | ERR3283014 | HR-TB | None | ERR3283028 | Other | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283032 | HR-TB | None | ERR3283031 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3283051 | Other | lineage4.9 | None | ERR3283057 | HR-TB | lineage4 | None | ERR3445502 | HR-TB | lineage4 | None | ERR3283010 | Other | La1 | None | ERR3283021 | HR-TB | None | ERR3283027 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3283047 | HR-TB | None | ERR3445501 | HR-TB | None | ERR5336148 | Other | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797019 | Other | La1.8.1 | None | ERR3797015 | HR-TB | None | ERR3797058 | Other | lineage4.9 | None | ERR3797048 | HR-TB | None | ERR3797067 | Other | La1.8.1 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797069 | Other | None | ERR3797063 | HR-TB | None | ERR3797087 | Sensitive | lineage4 | None | ERR3797073 | HR-TB | La1.8.1 | None | ERR3797064 | Sensitive | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797079 | Sensitive | lineage4 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR405209 | Sensitive | lineage4 | None | ERR387051 | HR-TB | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4769450 | HR-TB | None | ERR4769452 | HR-TB | None | ERR4407463 | HR-TB | None | ERR4769474 | HR-TB | lineage4 | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4796929 | Sensitive | lineage4 | None | ERR4800341 | Other | lineage3 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR2514818 | Sensitive | lineage4.1.2 | gb | ERR4799171 | Pre-XDR-TB | lineage4.8 | None | ERR4811022 | HR-TB | None | ERR4810741 | HR-TB | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR4811105 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR6866410 | Sensitive | None | ERR6358979 | Other | None | ERR736874 | HR-TB | None | ERR702406 | HR-TB | None | ERR736867 | HR-TB | None | ERR7821163 | Other | lineage2.2.1 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR9117709 | HR-TB | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9786604 | Other | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9786515 | Other | lineage4.1.2.1 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9787165 | Other | lineage6 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786843 | Other | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9787197 | Other | None | ERR9787139 | Other | lineage6.3.1 | None | SRR1169194 | Other | None | SRR10809074 | Sensitive | lineage4 | None | SRR10808805 | Sensitive | None | SRR1167384 | Other | lineage4 | None | SRR1172234 | Other | None | SRR1169249 | Other | La3 | None | SRR1169306 | Other | None | SRR1172844 | MDR-TB | lineage4.4.1.1 | None | SRR1172728 | MDR-TB | None | SRR1172817 | HR-TB | None | SRR1172857 | MDR-TB | None | SRR1173118 | Other | None | SRR1172951 | Other | None | SRR1173384 | Other | lineage4 | None | SRR1173153 | HR-TB | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173363 | HR-TB | None | SRR1173629 | Other | None | SRR1173400 | Other | None | SRR1173484 | Other | lineage4 | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1175074 | MDR-TB | None | SRR1173706 | Other | lineage4.9 | None | SRR1173788 | Other | None | SRR1175049 | RR-TB | None | SRR1173778 | Other | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1175090 | Other | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1184380 | HR-TB | None | SRR1183049 | Other | lineage2.2 | None | SRR1184294 | HR-TB | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184381 | MDR-TB | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184372 | MDR-TB | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196566 | HR-TB | None | SRR1184388 | Other | None | SRR1196494 | MDR-TB | None | SRR1196546 | HR-TB | None | SRR12142341 | HR-TB | None | SRR12006550 | Other | lineage1.2.1.2 | None | SRR1196677 | HR-TB | lineage2 | None | SRR1196768 | MDR-TB | None | SRR14801749 | Sensitive | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR12416824 | HR-TB | None | SRR13837827 | Sensitive | lineage4.9 | None | SRR1710057 | Other | lineage2.1 | None | SRR15368973 | Other | None | SRR18003019 | Other | lineage2.2.1 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR8692825 | Other | lineage4.9 | None | SRR19303884 | HR-TB | None | SRR19304036 | HR-TB | None | SRR20969677 | HR-TB | lineage2 | None | SRR8692905 | HR-TB | None | SRR8692863 | Other | lineage4;lineage2.2 | None | SRR8692882 | HR-TB | lineage4.9 | None | SRR8692887 | Other | None | SRR26399973 | Other | lineage4.9;La3 | None |
|---|
