TB-Profiler result

Run: SRR6785263
Summary

Run ID: SRR6785263

Sample name:

Date: 04-04-2023 15:40:34

Number of reads: 2491233

Percentage reads mapped: 82.31

Strain: lineage2.2.1

Drug-resistance: Sensitive

Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage2 East-Asian Beijing RD105 0.99
lineage2.2 East-Asian (Beijing) Beijing-RD207 RD105;RD207 0.98
lineage2.2.1 East-Asian (Beijing) Beijing-RD181 RD105;RD207;RD181 0.99
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6238 c.999G>A synonymous_variant 0.15
gyrB 6242 p.Arg335Asn missense_variant 0.14
gyrB 6250 c.1011A>G synonymous_variant 0.16
gyrB 6256 c.1017G>A synonymous_variant 0.17
gyrB 6268 c.1029C>G synonymous_variant 0.14
gyrB 6280 c.1041T>C synonymous_variant 0.15
gyrB 6286 c.1047T>C synonymous_variant 0.15
gyrB 6289 c.1050C>T synonymous_variant 0.14
gyrB 6292 c.1053G>C synonymous_variant 0.15
gyrA 6307 c.-995T>G upstream_gene_variant 0.15
gyrA 6362 c.-940T>C upstream_gene_variant 0.16
gyrA 6649 c.-653T>C upstream_gene_variant 0.15
gyrA 6655 c.-647T>C upstream_gene_variant 0.14
gyrA 6670 c.-632G>C upstream_gene_variant 0.17
gyrA 6673 c.-629A>C upstream_gene_variant 0.16
gyrA 6676 c.-626T>G upstream_gene_variant 0.16
gyrA 6700 c.-602T>C upstream_gene_variant 0.19
gyrA 6703 c.-599G>C upstream_gene_variant 0.19
gyrA 6709 c.-593A>G upstream_gene_variant 0.2
gyrA 6712 c.-590G>C upstream_gene_variant 0.21
gyrA 6728 c.-574_-572delCTAinsTTG upstream_gene_variant 0.17
gyrA 6745 c.-557T>G upstream_gene_variant 0.13
gyrA 6775 c.-527G>C upstream_gene_variant 0.13
gyrA 7078 c.-224A>C upstream_gene_variant 0.15
gyrA 7084 c.-218A>G upstream_gene_variant 0.16
gyrA 7090 c.-212C>T upstream_gene_variant 0.13
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491742 c.960T>C synonymous_variant 1.0
mshA 575907 p.Ala187Val missense_variant 0.94
ccsA 620295 c.405G>T synonymous_variant 0.16
ccsA 620310 c.420C>T synonymous_variant 0.18
ccsA 620317 p.Val143Leu missense_variant 0.18
ccsA 620340 c.450C>G synonymous_variant 0.21
ccsA 620346 c.456C>G synonymous_variant 0.22
ccsA 620362 p.Ala158Thr missense_variant 0.21
ccsA 620367 c.477T>C synonymous_variant 0.22
ccsA 620373 c.483C>G synonymous_variant 0.22
ccsA 620376 c.486G>C synonymous_variant 0.22
ccsA 620385 c.495G>C synonymous_variant 0.21
ccsA 620388 c.498A>G synonymous_variant 0.19
ccsA 620389 c.499C>T synonymous_variant 0.19
ccsA 620412 c.522T>C synonymous_variant 0.19
ccsA 620415 c.525T>C synonymous_variant 0.16
ccsA 620421 c.531G>C synonymous_variant 0.13
ccsA 620424 c.534G>C synonymous_variant 0.16
ccsA 620460 c.570T>G synonymous_variant 0.13
ccsA 620625 p.Ile245Met missense_variant 0.98
rpoB 760181 c.375T>C synonymous_variant 0.15
rpoB 760184 c.378A>G synonymous_variant 0.15
rpoB 760196 c.390C>G synonymous_variant 0.14
rpoB 760223 c.417T>C synonymous_variant 0.15
rpoB 760298 c.492G>C synonymous_variant 0.14
rpoB 760307 c.501T>C synonymous_variant 0.14
rpoB 760328 c.522G>C synonymous_variant 0.18
rpoB 760331 c.525G>C synonymous_variant 0.18
rpoB 760340 c.534G>T synonymous_variant 0.18
rpoB 760361 c.555T>C synonymous_variant 0.21
rpoB 760370 c.564C>G synonymous_variant 0.22
rpoB 760376 p.Asp190Glu missense_variant 0.21
rpoB 760380 p.Thr192Leu missense_variant 0.19
rpoB 760406 c.600G>C synonymous_variant 0.23
rpoB 760412 c.606C>G synonymous_variant 0.2
rpoB 760424 c.618C>G synonymous_variant 0.17
rpoB 760430 c.624T>C synonymous_variant 0.18
rpoB 760475 c.669A>G synonymous_variant 0.16
rpoB 760481 c.675G>C synonymous_variant 0.16
rpoB 760484 c.678A>G synonymous_variant 0.15
rpoB 760522 p.Ser239Asn missense_variant 0.16
rpoB 760532 c.726T>C synonymous_variant 0.14
rpoB 760533 p.Val243Thr missense_variant 0.14
rpoB 760541 c.735G>C synonymous_variant 0.14
rpoB 760547 c.741G>C synonymous_variant 0.14
rpoB 760563 p.Arg253Ile missense_variant 0.13
rpoB 760591 p.Val262Ala missense_variant 0.21
rpoB 760611 c.805T>C synonymous_variant 0.16
rpoB 760646 c.840C>G synonymous_variant 0.13
rpoB 760661 c.855A>C synonymous_variant 0.14
rpoB 760670 c.864G>C synonymous_variant 0.14
rpoB 761057 c.1251G>C synonymous_variant 0.17
rpoB 761102 c.1296A>G synonymous_variant 0.19
rpoB 761129 c.1323G>C synonymous_variant 0.16
rpoB 761132 c.1326G>T synonymous_variant 0.15
rpoB 761133 c.1327T>C synonymous_variant 0.16
rpoB 761150 c.1344A>C synonymous_variant 0.16
rpoB 761153 c.1347G>C synonymous_variant 0.17
rpoB 761165 c.1359G>C synonymous_variant 0.18
rpoB 761180 c.1374A>C synonymous_variant 0.15
rpoB 761207 c.1401C>T synonymous_variant 0.13
rpoB 761219 c.1413G>C synonymous_variant 0.14
rpoB 761249 c.1443A>G synonymous_variant 0.17
rpoB 761255 c.1449T>G synonymous_variant 0.17
rpoB 761261 c.1455G>T synonymous_variant 0.17
rpoB 761306 c.1500C>G synonymous_variant 0.15
rpoB 761312 c.1506G>C synonymous_variant 0.15
rpoB 761327 c.1521A>G synonymous_variant 0.15
rpoB 761330 c.1524G>C synonymous_variant 0.15
rpoB 761354 c.1548C>T synonymous_variant 0.17
rpoB 761360 c.1554T>C synonymous_variant 0.17
rpoB 761362 p.Ser519Thr missense_variant 0.16
rpoB 761636 c.1830G>T synonymous_variant 0.14
rpoB 761645 c.1839C>G synonymous_variant 0.14
rpoB 761648 c.1842T>C synonymous_variant 0.14
rpoB 761657 c.1851C>G synonymous_variant 0.14
rpoB 762008 c.2202C>T synonymous_variant 0.13
rpoB 762065 c.2259T>C synonymous_variant 0.14
rpoB 762083 c.2277T>C synonymous_variant 0.14
rpoB 762086 c.2280G>C synonymous_variant 0.14
rpoB 762329 c.2523G>C synonymous_variant 0.13
rpoB 762338 c.2532T>C synonymous_variant 0.14
rpoB 762347 c.2541T>C synonymous_variant 0.13
rpoC 762434 c.-936T>C upstream_gene_variant 0.13
rpoC 762449 c.-921C>A upstream_gene_variant 0.13
rpoC 762989 c.-381G>C upstream_gene_variant 0.2
rpoC 762995 c.-375G>T upstream_gene_variant 0.2
rpoC 763013 c.-357C>G upstream_gene_variant 0.18
rpoC 763025 c.-345C>T upstream_gene_variant 0.15
rpoC 763028 c.-342T>C upstream_gene_variant 0.21
rpoC 763031 c.-339T>C upstream_gene_variant 0.94
rpoC 763034 c.-336C>G upstream_gene_variant 0.21
rpoC 763040 c.-330C>G upstream_gene_variant 0.23
rpoC 763070 c.-300T>C upstream_gene_variant 0.25
rpoC 763085 c.-285C>G upstream_gene_variant 0.18
rpoC 763115 c.-255T>C upstream_gene_variant 0.15
rpoC 763136 c.-234C>T upstream_gene_variant 0.18
rpoC 763148 c.-222G>C upstream_gene_variant 0.18
rpoC 763158 c.-212C>T upstream_gene_variant 0.19
rpoC 763166 c.-204A>G upstream_gene_variant 0.18
rpoC 763190 c.-180C>T upstream_gene_variant 0.16
rpoC 763206 c.-164_-162delAGTinsTCG upstream_gene_variant 0.14
rpoC 763214 c.-156T>C upstream_gene_variant 0.15
rpoC 763226 c.-144A>G upstream_gene_variant 0.15
rpoC 763227 c.-143C>T upstream_gene_variant 0.15
rpoC 763238 c.-132T>C upstream_gene_variant 0.14
rpoC 763253 c.-117G>C upstream_gene_variant 0.15
rpoC 763256 c.-114G>A upstream_gene_variant 0.15
rpoC 763456 c.87A>G synonymous_variant 0.14
rpoC 763486 c.117T>G synonymous_variant 0.15
rpoC 763528 c.159G>A synonymous_variant 0.14
rpoC 763570 c.201G>C synonymous_variant 0.16
rpoC 763573 c.204G>C synonymous_variant 0.15
rpoC 763594 c.225C>T synonymous_variant 0.16
rpoC 763603 c.234C>T synonymous_variant 0.16
rpoC 763636 c.267T>C synonymous_variant 0.16
rpoC 763660 c.291T>G synonymous_variant 0.15
rpoC 763675 c.306C>G synonymous_variant 0.14
rpoC 763696 c.327T>C synonymous_variant 0.2
rpoC 763702 c.333C>G synonymous_variant 0.2
rpoC 763717 c.348T>C synonymous_variant 0.19
rpoC 763723 c.354G>C synonymous_variant 0.18
rpoC 763732 c.363C>G synonymous_variant 0.18
rpoC 763741 c.372C>T synonymous_variant 0.18
rpoC 763744 c.375G>C synonymous_variant 0.16
rpoC 763765 c.396T>C synonymous_variant 0.21
rpoC 763774 c.405G>C synonymous_variant 0.24
rpoC 763807 c.438T>C synonymous_variant 0.19
rpoC 763816 c.447C>G synonymous_variant 0.17
rpoC 763835 p.Ala156Met missense_variant 0.15
rpoC 763853 p.Val162Ile missense_variant 0.15
rpoC 763858 c.489A>G synonymous_variant 0.17
rpoC 763872 p.Gly168Ala missense_variant 0.16
rpoC 763876 p.Glu169Asp missense_variant 0.16
rpoC 763879 c.510A>G synonymous_variant 0.14
rpoC 763888 c.519G>C synonymous_variant 0.15
rpoC 763891 c.522G>C synonymous_variant 0.15
rpoC 763894 c.525A>G synonymous_variant 0.16
rpoC 763900 c.531G>C synonymous_variant 0.18
rpoC 763936 c.567C>G synonymous_variant 0.18
rpoC 763939 c.570G>A synonymous_variant 0.18
rpoC 763942 c.573C>G synonymous_variant 0.16
rpoC 763948 c.579G>A synonymous_variant 0.17
rpoC 763949 c.580C>A synonymous_variant 0.17
rpoC 763954 c.585C>G synonymous_variant 0.16
rpoC 763963 c.594C>T synonymous_variant 0.13
rpoC 763987 c.618C>T synonymous_variant 0.16
rpoC 763996 c.627T>C synonymous_variant 0.13
rpoC 764002 c.633C>G synonymous_variant 0.18
rpoC 764005 c.636G>C synonymous_variant 0.18
rpoC 764024 c.655_657delTTGinsCTC synonymous_variant 0.18
rpoC 764032 p.Asp221Glu missense_variant 0.19
rpoC 764040 p.Ser224Thr missense_variant 0.19
rpoC 764044 c.675T>C synonymous_variant 0.21
rpoC 764059 c.690G>T synonymous_variant 0.2
rpoC 764083 c.714A>G synonymous_variant 0.16
rpoC 764098 c.729A>G synonymous_variant 0.2
rpoC 764101 c.732C>G synonymous_variant 0.2
rpoC 764102 p.Val245Ile missense_variant 0.2
rpoC 764112 p.Tyr248Phe missense_variant 0.2
rpoC 764116 c.747C>T synonymous_variant 0.21
rpoC 764131 c.762T>C synonymous_variant 0.2
rpoC 764140 c.771C>T synonymous_variant 0.18
rpoC 764236 c.867G>A synonymous_variant 0.13
rpoC 764419 c.1050C>G synonymous_variant 0.13
rpoC 764428 c.1059G>C synonymous_variant 0.16
rpoC 764431 c.1062G>C synonymous_variant 0.16
rpoC 764434 c.1065A>G synonymous_variant 0.18
rpoC 764446 c.1077T>C synonymous_variant 0.18
rpoC 764449 c.1080G>C synonymous_variant 0.18
rpoC 764452 c.1083T>C synonymous_variant 0.19
rpoC 764458 c.1089G>C synonymous_variant 0.19
rpoC 764461 c.1092A>G synonymous_variant 0.2
rpoC 764489 c.1120C>T synonymous_variant 0.13
rpoC 764497 c.1128A>G synonymous_variant 0.16
rpoC 764510 c.1141C>T synonymous_variant 0.17
rpoC 764521 c.1152T>C synonymous_variant 0.17
rpoC 764527 c.1158C>T synonymous_variant 0.17
rpoC 764536 c.1167G>C synonymous_variant 0.16
rpoC 764539 c.1170C>G synonymous_variant 0.14
rpoC 764554 c.1185C>T synonymous_variant 0.13
rpoC 764560 c.1191T>C synonymous_variant 0.13
rpoC 764872 c.1503A>G synonymous_variant 0.13
rpoC 764932 c.1563C>A synonymous_variant 0.13
rpoC 764935 c.1566T>C synonymous_variant 0.13
rpoC 765478 c.2109T>C synonymous_variant 0.2
rpoC 765499 c.2130C>G synonymous_variant 0.19
rpoC 765529 c.2160C>T synonymous_variant 0.2
rpoC 765541 c.2172C>G synonymous_variant 0.17
rpoC 765553 c.2184C>T synonymous_variant 0.17
rpoC 765556 c.2187G>C synonymous_variant 0.17
rpoC 765559 c.2190G>C synonymous_variant 0.17
rpoC 765580 c.2211G>C synonymous_variant 0.16
rpoC 765613 p.His748Gln missense_variant 0.18
rpoC 765739 c.2370G>T synonymous_variant 0.14
rpoC 765835 c.2466C>T synonymous_variant 0.14
rpoC 765850 c.2481G>C synonymous_variant 0.13
rpoC 765994 c.2625A>T synonymous_variant 0.14
rpoC 766027 c.2658G>C synonymous_variant 0.13
rpoC 766043 p.Gln892Glu missense_variant 0.15
rpoC 766054 c.2685C>G synonymous_variant 0.16
rpoC 766531 c.3162G>C synonymous_variant 0.12
rpoC 766645 p.Glu1092Asp missense_variant 0.83
rpoC 766894 c.3525T>C synonymous_variant 0.17
rpoC 766900 c.3531T>C synonymous_variant 0.18
rpoC 766933 c.3564A>G synonymous_variant 0.17
rpoC 766945 c.3576A>G synonymous_variant 0.15
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 0.98
mmpL5 776182 p.Asp767Asn missense_variant 0.98
mmpS5 779615 c.-710C>G upstream_gene_variant 0.96
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781728 c.169T>C synonymous_variant 0.14
rpsL 781736 c.177T>C synonymous_variant 0.13
rpsL 781742 c.183C>T synonymous_variant 0.14
rpsL 781760 c.201T>C synonymous_variant 0.14
rpsL 781772 c.213C>A synonymous_variant 0.14
rplC 801321 c.513C>T synonymous_variant 0.14
rplC 801324 c.516T>C synonymous_variant 0.17
rplC 801339 c.531T>C synonymous_variant 0.13
rplC 801341 p.Leu178Gln missense_variant 0.13
rplC 801348 c.540T>G synonymous_variant 0.15
rplC 801357 c.549T>C synonymous_variant 0.14
rplC 801367 p.Ala187Thr missense_variant 0.15
rplC 801402 c.594T>C synonymous_variant 0.15
rplC 801405 c.597T>C synonymous_variant 0.15
rplC 801423 c.615G>C synonymous_variant 0.14
rplC 801426 c.618C>G synonymous_variant 0.14
rplC 801427 p.Met207Val missense_variant 0.15
rplC 801438 c.630T>C synonymous_variant 0.18
rplC 801442 p.Ile212Val missense_variant 0.16
fbiC 1303920 c.990C>T synonymous_variant 0.13
Rv1258c 1406760 c.580_581insC frameshift_variant 0.94
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrl 1473943 n.286G>T non_coding_transcript_exon_variant 0.15
rrl 1473986 n.329T>C non_coding_transcript_exon_variant 0.16
rrl 1473987 n.330G>A non_coding_transcript_exon_variant 0.15
rrl 1473995 n.338G>T non_coding_transcript_exon_variant 0.19
rrl 1474001 n.344C>T non_coding_transcript_exon_variant 0.17
rrl 1474009 n.352A>G non_coding_transcript_exon_variant 0.16
rrl 1474012 n.355C>T non_coding_transcript_exon_variant 0.16
rrl 1474639 n.982G>A non_coding_transcript_exon_variant 0.18
rrl 1474970 n.1313G>A non_coding_transcript_exon_variant 0.14
rrl 1475006 n.1349A>T non_coding_transcript_exon_variant 0.15
rrl 1475013 n.1356G>A non_coding_transcript_exon_variant 0.17
rrl 1475199 n.1542G>A non_coding_transcript_exon_variant 0.2
rrl 1475206 n.1549C>T non_coding_transcript_exon_variant 0.18
rrl 1475209 n.1552G>C non_coding_transcript_exon_variant 0.17
rrl 1475213 n.1556C>T non_coding_transcript_exon_variant 0.17
rrl 1475249 n.1592T>C non_coding_transcript_exon_variant 0.15
rrl 1475252 n.1595C>T non_coding_transcript_exon_variant 0.18
rrl 1475266 n.1609T>C non_coding_transcript_exon_variant 0.16
rrl 1475275 n.1618C>T non_coding_transcript_exon_variant 0.16
rrl 1475369 n.1712G>T non_coding_transcript_exon_variant 0.13
rrl 1475402 n.1745C>T non_coding_transcript_exon_variant 0.13
rrl 1475419 n.1762C>T non_coding_transcript_exon_variant 0.18
rrl 1475483 n.1826C>T non_coding_transcript_exon_variant 0.21
rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 0.22
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.13
rrl 1475599 n.1942A>G non_coding_transcript_exon_variant 0.25
rrl 1475608 n.1951T>C non_coding_transcript_exon_variant 0.25
rrl 1475638 n.1981C>T non_coding_transcript_exon_variant 0.14
rrl 1475642 n.1985T>C non_coding_transcript_exon_variant 0.16
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.13
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.16
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.17
rrl 1476583 n.2926G>A non_coding_transcript_exon_variant 0.16
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.16
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 0.15
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.17
rrl 1476603 n.2946G>A non_coding_transcript_exon_variant 0.16
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.15
inhA 1674561 c.360C>T synonymous_variant 0.14
rpsA 1833811 c.270G>T synonymous_variant 0.14
rpsA 1833838 c.297G>C synonymous_variant 0.15
rpsA 1833841 c.300C>G synonymous_variant 0.16
rpsA 1833847 c.306C>G synonymous_variant 0.14
rpsA 1833856 c.315A>G synonymous_variant 0.14
rpsA 1833928 c.387G>C synonymous_variant 0.2
rpsA 1833940 c.399C>G synonymous_variant 0.23
rpsA 1833971 c.430C>T synonymous_variant 0.19
rpsA 1833979 c.438T>C synonymous_variant 0.22
rpsA 1834000 c.459G>C synonymous_variant 0.19
rpsA 1834021 c.480C>T synonymous_variant 0.17
rpsA 1834030 c.489C>G synonymous_variant 0.17
rpsA 1834081 c.540C>T synonymous_variant 0.14
rpsA 1834096 c.555G>C synonymous_variant 0.16
rpsA 1834099 c.558C>G synonymous_variant 0.15
rpsA 1834102 c.561T>C synonymous_variant 0.16
rpsA 1834105 c.564C>G synonymous_variant 0.16
rpsA 1834108 c.567C>G synonymous_variant 0.16
rpsA 1834123 c.582C>G synonymous_variant 0.16
rpsA 1834177 c.636A>C synonymous_variant 0.99
rpsA 1834210 c.669C>T synonymous_variant 0.15
rpsA 1834222 c.681T>C synonymous_variant 0.14
rpsA 1834231 c.690T>C synonymous_variant 0.13
rpsA 1834303 c.762T>C synonymous_variant 0.14
rpsA 1834348 c.807T>C synonymous_variant 0.15
rpsA 1834366 c.825A>G synonymous_variant 0.18
rpsA 1834396 c.855G>C synonymous_variant 0.17
rpsA 1834411 c.870T>C synonymous_variant 0.16
rpsA 1834417 c.876G>C synonymous_variant 0.16
rpsA 1834423 c.882G>C synonymous_variant 0.17
rpsA 1834435 c.894G>C synonymous_variant 0.19
rpsA 1834451 c.910T>C synonymous_variant 0.17
rpsA 1834465 c.924T>C synonymous_variant 0.21
rpsA 1834468 c.927A>G synonymous_variant 0.24
rpsA 1834489 c.948T>C synonymous_variant 0.31
rpsA 1834513 c.972C>G synonymous_variant 0.26
rpsA 1834528 c.987T>C synonymous_variant 0.24
rpsA 1834540 c.999G>C synonymous_variant 0.21
rpsA 1834546 c.1005T>C synonymous_variant 0.22
rpsA 1834555 c.1014T>G synonymous_variant 0.24
rpsA 1834609 c.1068T>C synonymous_variant 0.26
rpsA 1834618 c.1077G>C synonymous_variant 0.26
rpsA 1834633 c.1092A>G synonymous_variant 0.24
rpsA 1834639 c.1098T>C synonymous_variant 0.26
rpsA 1834654 p.Glu371Asp missense_variant 0.25
rpsA 1834690 c.1149T>C synonymous_variant 0.21
rpsA 1834753 c.1212T>C synonymous_variant 0.14
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2154724 p.Arg463Leu missense_variant 0.97
PPE35 2167926 p.Leu896Ser missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2517950 c.-165C>G upstream_gene_variant 0.19
folC 2747062 c.537A>G synonymous_variant 0.13
folC 2747065 c.534C>T synonymous_variant 0.13
Rv2752c 3066360 c.-169T>C upstream_gene_variant 0.17
thyX 3067355 c.591A>C synonymous_variant 0.17
thyX 3067367 c.579G>C synonymous_variant 0.17
thyX 3067373 c.573C>G synonymous_variant 0.22
thyX 3067376 c.570G>A synonymous_variant 0.19
thyX 3067391 c.555G>C synonymous_variant 0.22
thyX 3067394 c.552G>C synonymous_variant 0.22
thyX 3067439 c.507A>G synonymous_variant 0.33
thyX 3067445 c.501C>G synonymous_variant 0.33
thyX 3067457 c.489C>G synonymous_variant 0.37
thyX 3067465 p.Ile161Val missense_variant 0.38
thyX 3067475 c.471A>G synonymous_variant 0.41
thyX 3067490 c.456C>G synonymous_variant 0.39
thyX 3067493 c.453A>G synonymous_variant 0.38
thyX 3067515 p.Ser144Thr missense_variant 0.33
thyX 3067530 p.Ala139Ser missense_variant 0.26
thyX 3067545 p.Glu134Ala missense_variant 0.26
thyX 3067549 p.Thr133Ala missense_variant 0.22
thyX 3067556 p.His130Gln missense_variant 0.19
thyX 3067559 c.387C>G synonymous_variant 0.16
thyX 3067565 p.Asp127Glu missense_variant 0.15
thyX 3067570 p.Ala126Pro missense_variant 0.13
thyX 3067601 p.Arg115His missense_variant 0.14
thyX 3067652 c.294T>C synonymous_variant 0.18
thyX 3067661 c.285C>G synonymous_variant 0.16
thyX 3067685 c.261A>C synonymous_variant 0.15
thyX 3067691 p.Ile85Leu missense_variant 0.14
thyX 3067694 c.252G>C synonymous_variant 0.15
thyX 3067814 c.132T>C synonymous_variant 0.15
thyX 3067869 p.Thr26Ser missense_variant 0.15
thyX 3067874 c.72C>G synonymous_variant 0.16
thyX 3067883 c.63C>G synonymous_variant 0.16
thyX 3067886 c.60A>C synonymous_variant 0.16
thyX 3067889 c.57C>G synonymous_variant 0.14
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
Rv3236c 3612813 p.Thr102Ala missense_variant 1.0
rpoA 3877704 c.804G>C synonymous_variant 0.15
rpoA 3877743 c.765T>C synonymous_variant 0.15
rpoA 3877764 c.744C>G synonymous_variant 0.15
rpoA 3877770 c.738A>G synonymous_variant 0.14
rpoA 3877776 c.732T>C synonymous_variant 0.13
clpC1 4038845 c.1860G>C synonymous_variant 0.14
clpC1 4038860 c.1845G>C synonymous_variant 0.13
clpC1 4040291 c.414G>C synonymous_variant 0.16
clpC1 4040318 c.387C>G synonymous_variant 0.17
clpC1 4040330 c.375C>G synonymous_variant 0.14
clpC1 4040342 c.363C>G synonymous_variant 0.15
clpC1 4040423 c.282A>G synonymous_variant 0.16
clpC1 4040426 c.279T>C synonymous_variant 0.16
clpC1 4040431 c.274T>C synonymous_variant 0.15
clpC1 4040444 c.261C>T synonymous_variant 0.16
clpC1 4040450 c.255A>G synonymous_variant 0.15
clpC1 4040459 c.246C>G synonymous_variant 0.14
clpC1 4040465 c.240T>C synonymous_variant 0.13
clpC1 4040471 c.234T>C synonymous_variant 0.12
clpC1 4040501 c.204C>T synonymous_variant 0.13
embC 4241107 c.1245G>C synonymous_variant 0.13
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4243460 c.228C>T synonymous_variant 0.98
embA 4244728 p.Phe499Trp missense_variant 0.13
aftB 4267647 p.Asp397Gly missense_variant 0.94
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 0.98
gid 4407927 p.Glu92Asp missense_variant 1.0