Rv0005 - c.1011A>G


Drug resistance types
76 Sensitive 4 RR-TB 183 HR-TB 23 MDR-TB 9 Pre-XDR-TB 0 XDR-TB 125 Other
lineage Counts
lineage Count
174
lineage4 25
lineage4.1.2.1 16
lineage4.9 41
lineage4.3 1
lineage4.1.1.3 2
lineage2.2 9
lineage4.4.1.1 42
lineage2.2.1 24
La1.8.1 8
lineage4.8;La3 1
La2 2
lineage4.8 10
lineage4.1 2
lineage4.1.1 2
lineage4.2.2.2 1
lineage4.1.1.2 1
lineage4.7 2
lineage3 3
lineage3.1 2
lineage1.1 1
lineage4.6.2.2 4
lineage5.2 2
lineage4.2.1 2
lineage4.2.1.1 1
lineage4.3.4.1 2
lineage4.1.2 1
lineage4.4.1.2 1
La1 2
lineage4.1.3 2
La1.2 1
lineage1.2.2.2 1
lineage2 3
lineage4.6.1.1 1
lineage4.3.3 2
lineage4.3.4 2
lineage4.3.2 2
lineage4.1.2.1.1 1
lineage1.1.2 1
lineage4.3.4.2.1 1
lineage4.8;lineage4.1 1
lineage6.1.3 1
lineage6 2
lineage6.3.1 1
La3 1
lineage2.2.1.1 3
lineage4.5 2
lineage1.1.1 1
lineage1.2.1.2.1 1
lineage9;lineage3.1 1
lineage4;lineage2.2 1
lineage4.9;La3 1
lineage6.3;lineage4.9;lineage2.1 1
lineage6.3;lineage2.2.1 1
lineage3;lineage2.1 1
spoligotype Counts
spoligotype Count
None 420
Geographic prevalence
Country level data for this variant is available for 45 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR3675236 HR-TB None
SRR3675270 HR-TB None
ERR181824 HR-TB lineage4 None
SRR3675232 Other lineage4.1.2.1 None
ERR181887 HR-TB None
SRR3675284 HR-TB lineage4.9 None
ERR176568 Other lineage4.3 None
ERR176651 HR-TB None
ERR176643 HR-TB None
SRR3675311 Other None
SRR3675383 HR-TB None
SRR3675456 HR-TB None
SRR3675510 Other None
ERR176751 HR-TB None
ERR4816999 Other None
ERR212125 HR-TB lineage4 None
ERR2027263 Other lineage4 None
SRR3675545 HR-TB None
ERR212001 HR-TB None
SRR3675550 Other None
ERR212033 HR-TB None
ERR4817060 RR-TB None
ERR4817037 Other lineage4.9 None
SRR3675555 HR-TB None
ERR212034 HR-TB None
SRR3675558 HR-TB None
SRR3675572 Other None
ERR212123 Other None
ERR4816551 HR-TB lineage4.1.1.3 None
SRR3675574 HR-TB None
SRR3675571 HR-TB None
ERR4816466 HR-TB None
ERR4816585 Other lineage2.2 None
SRR3742665 HR-TB None
SRR4034419 Sensitive lineage4.4.1.1 None
ERR502912 Other lineage2.2.1 None
ERR4818021 Other La1.8.1 None
ERR4817893 Other lineage4.8;La3 None
ERR4817896 HR-TB lineage2.2.1 None
ERR551704 Sensitive La2 None
ERR4817735 Other lineage4.8 None
ERR2446566 Other lineage4.1 None
ERR1035162 Other None
ERR3275196 Other lineage2.2.1 nl
ERR2229143 Other lineage4.1.1 None
ERR234659 HR-TB None
ERR2513470 Other lineage4.2.2.2 None
ERR4818252 Other lineage4.1.1.2 None
ERR4818615 Other None
ERR4818607 Sensitive lineage4.9 None
ERR1035138 MDR-TB None
ERR3275201 Sensitive lineage4.8 nl
SRR5341456 Other None
SRR5341418 Other None
ERR4819932 Other lineage4.7 None
ERR4819781 Other lineage2.2.1 None
ERR2514692 Other None
SRR5341302 HR-TB None
SRR5341332 Pre-XDR-TB lineage3 None
SRR5341333 HR-TB None
SRR5341330 HR-TB None
ERR6359082 Other lineage4.9 None
SRR6045526 HR-TB None
ERR4820854 Other lineage4.1.2.1 None
ERR2693239 HR-TB None
SRR4034416 Sensitive lineage4.4.1.1 za
SRR6045503 HR-TB None
ERR2693238 HR-TB lineage4.9 None
ERR2446563 Other lineage2.2.1 nl
ERR2446570 Sensitive lineage4.8 nl
SRR6045450 Other lineage4.9 None
SRR4034412 Sensitive lineage4.4.1.1 za
SRR4034418 Sensitive lineage4.4.1.1 za
SRR4034433 Sensitive lineage4.4.1.1 za
SRR4034394 Sensitive lineage4.4.1.1 za
SRR6045519 HR-TB None
SRR4034400 Sensitive lineage4.4.1.1 za
SRR4034405 Sensitive lineage4.4.1.1 za
SRR4034396 Sensitive lineage4.4.1.1 za
SRR4034407 Sensitive lineage4.4.1.1 za
ERR551706 Sensitive La2 cg
SRR4034426 Sensitive lineage4.4.1.1 za
SRR6045555 HR-TB None
ERR2693227 Other lineage4.9 None
SRR4034408 Sensitive lineage4.4.1.1 za
ERR278594 HR-TB None
ERR2660539 Other lineage4.9 None
SRR4034432 Sensitive lineage4.4.1.1 za
SRR4034427 Sensitive lineage4.4.1.1 za
ERR4827864 HR-TB lineage4.8 None
SRR4034428 Sensitive lineage4.4.1.1 za
SRR4034421 Sensitive lineage4.4.1.1 za
SRR4034404 Sensitive lineage4.4.1.1 za
ERR4821655 Sensitive lineage4 None
SRR4034409 Sensitive lineage4.4.1.1 za
SRR4034413 Sensitive lineage4.4.1.1 za
SRR4034430 Sensitive lineage4.4.1.1 za
SRR4034411 Sensitive lineage4.4.1.1 za
SRR4034406 Sensitive lineage4.4.1.1 za
SRR4034402 Sensitive lineage4.4.1.1 za
SRR4034417 Sensitive lineage4.4.1.1 za
SRR4034434 Sensitive lineage4.4.1.1 za
SRR4034431 Sensitive lineage4.4.1.1 za
SRR6046133 HR-TB None
SRR6044838 Other lineage4.9 None
SRR4034410 Sensitive lineage4.4.1.1 za
SRR4034435 Sensitive lineage4.4.1.1 za
SRR6044790 HR-TB None
SRR6044835 Sensitive lineage4 None
SRR6044855 Other lineage4.9 None
SRR6044875 HR-TB lineage4.9 None
SRR6045952 HR-TB None
SRR6044876 Sensitive lineage4 None
SRR4034401 Sensitive lineage4.4.1.1 za
SRR4034398 Sensitive lineage4.4.1.1 za
SRR6045053 Other None
SRR6045158 Other lineage4.9 None
SRR4034395 Sensitive lineage4.4.1.1 za
SRR4034399 Sensitive lineage4.4.1.1 za
SRR4034423 Sensitive lineage4.4.1.1 za
SRR6046046 Other None
SRR6045217 Other lineage4 None
SRR6046253 HR-TB lineage4.9 None
SRR6045233 HR-TB None
SRR6046210 Other lineage4 None
SRR6045399 Other None
SRR6046066 HR-TB None
SRR6045327 HR-TB None
SRR4034422 Sensitive lineage4.4.1.1 za
SRR6046299 HR-TB None
SRR6046305 Other lineage4.9 None
SRR4034429 Sensitive lineage4.4.1.1 za
SRR6325444 HR-TB None
SRR6046382 HR-TB lineage2.2.1 None
SRR6046514 HR-TB None
SRR6046492 Other None
SRR6325448 HR-TB None
ERR4797204 Other lineage4.4.1.1 in
SRR6046594 HR-TB lineage4 None
SRR4034424 Sensitive lineage4.4.1.1 za
SRR6046540 HR-TB None
SRR4034420 Sensitive lineage4.4.1.1 za
SRR4034397 Sensitive lineage4.4.1.1 za
SRR6046824 HR-TB None
SRR6325447 HR-TB None
SRR6397654 HR-TB lineage4.1.2.1 None
SRR4034415 Sensitive lineage4.4.1.1 za
SRR6046878 HR-TB lineage4 None
SRR6458421 MDR-TB lineage2.2.1 None
SRR6325442 HR-TB None
ERR323034 HR-TB lineage3.1 None
ERR3077978 Other lineage1.1 None
ERR4872119 MDR-TB lineage4.6.2.2 None
ERR4872094 MDR-TB lineage5.2 None
ERR4831117 HR-TB None
SRR6785262 Sensitive lineage4.2.1 None
ERR294248 HR-TB None
SRR6785227 Other lineage2.2.1 None
ERR4831545 Pre-XDR-TB lineage2.2 None
ERR4831546 HR-TB lineage2.2 None
ERR2503463 Sensitive lineage4.8 fi
ERR323036 HR-TB None
SRR6785268 Sensitive lineage4.2.1 None
SRR6785267 Other lineage2.2.1 None
SRR6832178 HR-TB lineage4.2.1.1 None
SRR6789626 Other None
SRR6832787 RR-TB lineage2.2.1 None
ERR294266 HR-TB None
SRR6785263 Sensitive lineage2.2.1 None
ERR502532 HR-TB None
ERR502889 Other None
ERR5311090 HR-TB None
ERR323038 HR-TB None
ERR502908 HR-TB lineage2.2.1 None
ERR5311099 HR-TB None
ERR5311081 HR-TB None
ERR323054 HR-TB lineage3.1 None
ERR11465152 Sensitive lineage4.3.4.1 None
SRR7496517 Other None
SRR9970978 Sensitive lineage4.1.2 None
SRR7535086 Other None
SRR7585435 Other lineage4.9 None
SRR7131023 Other lineage4.1.2.1 None
SRR7496509 Other None
SRR7496523 Other lineage4.7 None
ERR323041 HR-TB None
ERR323043 HR-TB None
ERR323055 HR-TB None
ERR067681 HR-TB None
ERR323056 HR-TB lineage4.4.1.2 None
ERR323063 HR-TB None
ERR1034652 Other None
ERR067699 HR-TB lineage4 None
ERR1023295 HR-TB lineage4.1.2.1 None
ERR1034634 HR-TB None
ERR1063858 HR-TB None
ERR1063857 HR-TB None
ERR1035157 Other lineage4.9 None
ERR1063839 HR-TB lineage2.2 None
ERR1063862 HR-TB None
ERR108471 HR-TB lineage4 None
ERR1063859 HR-TB None
ERR1063896 Sensitive None
ERR133986 HR-TB None
ERR133825 Sensitive lineage4 None
ERR3283030 HR-TB lineage4.9 None
ERR3283014 HR-TB None
ERR3283010 Other La1 None
ERR3283017 HR-TB None
ERR3283025 HR-TB None
ERR3283028 Other None
ERR3283027 HR-TB None
ERR3283032 HR-TB None
ERR3283051 Other lineage4.9 None
ERR3283040 HR-TB None
ERR3283036 HR-TB None
ERR3283031 HR-TB None
ERR3283048 HR-TB lineage4.9 None
ERR3283047 HR-TB None
ERR3283055 HR-TB None
ERR3445501 HR-TB None
ERR3283057 HR-TB lineage4 None
ERR3439432 Other None
ERR3445502 HR-TB lineage4 None
ERR3445503 HR-TB None
ERR3797016 HR-TB None
ERR5336148 Other None
ERR3468544 HR-TB None
ERR3797015 HR-TB None
ERR3797048 HR-TB None
ERR3797019 Other La1.8.1 None
ERR3797023 HR-TB La1.8.1 None
ERR3797043 HR-TB None
ERR3797046 HR-TB None
ERR3797036 HR-TB None
ERR3797067 Other La1.8.1 None
ERR3797060 Other La1.8.1 None
ERR3797058 Other lineage4.9 None
ERR3797079 Sensitive lineage4 None
ERR3797065 MDR-TB lineage4 None
ERR3797073 HR-TB La1.8.1 None
ERR3797069 Other None
ERR3797063 HR-TB None
ERR3797080 HR-TB lineage4.9 None
ERR3797081 Sensitive lineage4 None
ERR3797064 Sensitive None
ERR3801503 Sensitive lineage4.6.2.2 None
ERR3797083 HR-TB None
ERR3797087 Sensitive lineage4 None
ERR3797086 Other lineage4.9 None
ERR403298 HR-TB lineage4 None
ERR3804169 HR-TB lineage4.1.3 None
ERR3806850 HR-TB lineage4.1.2.1 None
ERR387051 HR-TB None
ERR4188350 HR-TB None
ERR4187734 Other La1.8.1 None
ERR473332 Other lineage4 None
ERR4407463 HR-TB None
ERR4769452 HR-TB None
ERR4769417 Pre-XDR-TB lineage4.9 None
ERR4769497 HR-TB La1.2 None
ERR4769450 HR-TB None
ERR4769521 HR-TB None
ERR4797201 Other lineage1.2.2.2 None
ERR4797054 Pre-XDR-TB lineage2 None
ERR4798262 HR-TB La1 None
ERR4797588 MDR-TB lineage3 None
ERR4798406 HR-TB None
ERR4799025 Pre-XDR-TB None
ERR4798493 MDR-TB lineage2.2.1 None
SRR16088207 Sensitive lineage4.8 None
ERR4800341 Other lineage3 None
ERR4799513 HR-TB lineage2.2 None
ERR4800527 MDR-TB lineage2.2.1 None
ERR4810624 HR-TB lineage2.2 None
ERR4811142 MDR-TB None
ERR4810741 HR-TB None
ERR4811105 HR-TB None
ERR6358755 Other lineage4.6.1.1 None
ERR5908228 Other lineage4.3.3 None
ERR4811493 HR-TB None
ERR5917710 Other lineage4.1.2.1 None
ERR736817 HR-TB lineage4.3.4 None
ERR6358991 HR-TB None
ERR6359070 Other lineage4.9 None
ERR6866807 HR-TB lineage4 None
ERR6358837 HR-TB None
ERR6866547 Sensitive lineage4 None
ERR702404 HR-TB None
ERR702406 HR-TB None
ERR736839 Other None
ERR736835 HR-TB None
ERR772255 MDR-TB lineage4.3.2 None
ERR736848 HR-TB None
ERR736867 HR-TB None
ERR736875 HR-TB lineage4 None
ERR736874 HR-TB None
ERR760733 MDR-TB lineage4.1.2.1.1 None
ERR7911670 Pre-XDR-TB lineage2.2 None
ERR9117721 HR-TB lineage1.1.2 None
ERR176549 Other lineage4.3.4.2.1 None
ERR8976043 HR-TB None
ERR9117709 HR-TB None
ERR9117805 Other lineage4.3.2 None
ERR9119500 MDR-TB lineage5.2 None
ERR9119096 Other lineage4.3.3 None
ERR9119525 MDR-TB lineage4.6.2.2 None
ERR9119669 HR-TB None
ERR9786421 Other lineage4.1.2.1 None
ERR9786525 Other lineage4.8;lineage4.1 None
ERR9786515 Other lineage4.1.2.1 None
ERR9786694 Other lineage4.1.2.1 None
ERR9786569 Other lineage4.8 None
ERR9786611 HR-TB lineage4.1.3 None
ERR9786711 Sensitive lineage4.6.2.2 None
ERR9786986 HR-TB lineage4.1.2.1 None
ERR9786843 Other None
ERR9786911 HR-TB lineage4.1.2.1 None
ERR9787153 Other lineage6.1.3 None
ERR9787030 Sensitive lineage6 None
ERR9787165 Other lineage6 None
SRR10808805 Sensitive None
ERR9787139 Other lineage6.3.1 None
ERR9787197 Other None
SRR1167055 Other lineage4.1.2.1 None
SRR1163221 HR-TB lineage4.1.2.1 None
SRR1165506 Other lineage4.1.2.1 None
SRR1166821 HR-TB lineage4.1.2.1 None
SRR1169194 Other None
SRR1167384 Other lineage4 None
SRR1169249 Other La3 None
SRR1172728 MDR-TB None
SRR1169306 Other None
SRR1172234 Other None
SRR1173788 Other None
SRR1173633 HR-TB lineage4.9 None
SRR1173767 HR-TB lineage4.4.1.1 None
SRR1172817 HR-TB None
SRR1172844 MDR-TB lineage4.4.1.1 None
SRR1173118 Other None
SRR1175090 Other lineage4.9 None
SRR1175074 MDR-TB None
SRR1180147 Other lineage2.2.1.1 None
SRR1181091 Other lineage2.2.1.1 None
SRR1181020 Other lineage2.2.1 None
SRR1183049 Other lineage2.2 None
SRR1181328 Other lineage2.2.1 None
SRR1184372 MDR-TB None
SRR1183106 Other lineage2.2.1.1 None
SRR1183144 Other lineage2.2.1 None
SRR1183145 Other lineage2.2.1 None
SRR1184312 HR-TB lineage2.2.1 None
SRR12416824 HR-TB None
SRR1196494 MDR-TB None
SRR1196677 HR-TB lineage2 None
SRR12142341 HR-TB None
SRR12416840 MDR-TB lineage4.9 None
SRR13423543 Pre-XDR-TB lineage4.8 None
SRR13837684 Sensitive lineage4.9 None
SRR13423649 Sensitive lineage2.2.1 None
SRR13583478 HR-TB lineage4.3.4.1 None
SRR13423544 Other lineage4.5 None
SRR13861381 MDR-TB lineage4.9 None
SRR13837827 Sensitive lineage4.9 None
SRR13861266 Sensitive lineage4.9 None
SRR13861434 RR-TB lineage4.9 None
SRR13861413 Sensitive lineage4.9 None
SRR14066533 Sensitive lineage1.1.1 None
SRR13861528 HR-TB lineage4.9 None
SRR13861556 Other lineage4.9 None
SRR13861573 Other lineage4.9 None
SRR13861686 RR-TB lineage4.9 None
SRR13861699 Sensitive lineage4.9 None
SRR14782405 HR-TB None
SRR1510066 Other lineage1.2.1.2.1 None
SRR14801749 Sensitive None
SRR1640750 HR-TB None
SRR16087999 Sensitive lineage4.8 None
SRR16088600 Sensitive lineage4.8 None
SRR1791696 Other La1.8.1 None
SRR25827418 Pre-XDR-TB lineage9;lineage3.1 None
SRR18213713 HR-TB lineage4.5 None
SRR18910194 HR-TB lineage2.2 None
SRR20969677 HR-TB lineage2 None
SRR5709967 MDR-TB lineage2.2.1 None
SRR19303884 HR-TB None
SRR19304036 HR-TB None
SRR8692863 Other lineage4;lineage2.2 None
SRR8692905 HR-TB None
SRR8692807 Other lineage4.9 None
SRR8692897 Other lineage4.9 None
SRR8692825 Other lineage4.9 None
SRR8692887 Other None
SRR26399973 Other lineage4.9;La3 None
SRR28119741 Pre-XDR-TB lineage2.2.1 None
SRR23961558 Other lineage6.3;lineage4.9;lineage2.1 None
SRR28119811 Other lineage6.3;lineage2.2.1 None
SRR3675464 HR-TB lineage4.1 None
ERR4815604 HR-TB None
SRR3675502 Other None
ERR176778 HR-TB None
SRR6325445 HR-TB None
ERR176779 HR-TB None
ERR176793 Other lineage4.1.1 None
ERR550636 MDR-TB lineage4.1.1.3 None
ERR158583 HR-TB None
ERR1035239 HR-TB None
SRR3675465 HR-TB None
ERR161033 HR-TB None
ERR4814352 HR-TB lineage2.2.1 None
SRR3675482 HR-TB None
SAMN02585910 Other lineage2.2.1 None
SRR3675488 HR-TB None
SRR3675501 HR-TB None
ERR161039 Sensitive lineage4.3.4 None
ERR4814536 MDR-TB lineage3;lineage2.1 None
ERR181744 HR-TB None
SRR3675486 HR-TB None
SRR3675221 HR-TB None
SRR3675222 Other None