Rv0005 - c.1011A>G
Drug resistance types
74 Sensitive
4 RR-TB
183 HR-TB
23 MDR-TB
7 Pre-XDR-TB
0 XDR-TB
122 Other
lineage Counts
| lineage | Count |
|---|---|
| 174 | |
| lineage4.4.1.1 | 42 |
| lineage4 | 25 |
| lineage4.9 | 41 |
| lineage4.1.1.3 | 2 |
| lineage2.2 | 9 |
| lineage2.2.1 | 23 |
| lineage4.1 | 2 |
| La2 | 2 |
| lineage4.8 | 9 |
| La1.8.1 | 8 |
| lineage4.8;La3 | 1 |
| lineage4.2.2.2 | 1 |
| lineage4.1.1 | 2 |
| lineage4.1.1.2 | 1 |
| lineage3 | 3 |
| lineage4.7 | 2 |
| lineage4.1.2.1 | 16 |
| lineage1.1 | 1 |
| lineage3.1 | 2 |
| lineage4.2.1 | 2 |
| lineage5.2 | 2 |
| lineage4.6.2.2 | 4 |
| lineage4.2.1.1 | 1 |
| lineage4.1.2 | 1 |
| lineage4.4.1.2 | 1 |
| La1 | 2 |
| lineage4.1.3 | 2 |
| La1.2 | 1 |
| lineage2 | 3 |
| lineage1.2.2.2 | 1 |
| lineage4.3.3 | 2 |
| lineage4.6.1.1 | 1 |
| lineage4.3.2 | 2 |
| lineage4.3.4 | 2 |
| lineage4.1.2.1.1 | 1 |
| lineage1.1.2 | 1 |
| lineage4.8;lineage4.1 | 1 |
| lineage6 | 2 |
| lineage6.1.3 | 1 |
| lineage6.3.1 | 1 |
| La3 | 1 |
| lineage2.2.1.1 | 3 |
| lineage4.5 | 2 |
| lineage4.3.4.1 | 1 |
| lineage1.2.1.2.1 | 1 |
| lineage1.1.1 | 1 |
| lineage4;lineage2.2 | 1 |
| lineage3;lineage2.1 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 413 |
Geographic prevalence
Country level data for this variant is available for 45 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4816999 | Other | None | SRR4034430 | Sensitive | lineage4.4.1.1 | za | ERR2027263 | Other | lineage4 | None | SRR3675545 | HR-TB | None | ERR4817037 | Other | lineage4.9 | None | ERR212001 | HR-TB | None | SRR3675550 | Other | None | ERR212033 | HR-TB | None | SRR3675555 | HR-TB | None | ERR212034 | HR-TB | None | ERR4817060 | RR-TB | None | SRR3675558 | HR-TB | None | SRR3675572 | Other | None | ERR212123 | Other | None | ERR212125 | HR-TB | lineage4 | None | SRR3675574 | HR-TB | None | SRR4034434 | Sensitive | lineage4.4.1.1 | za | SRR3675571 | HR-TB | None | ERR4816466 | HR-TB | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | SRR3742665 | HR-TB | None | ERR4816585 | Other | lineage2.2 | None | SRR4034400 | Sensitive | lineage4.4.1.1 | za | SRR4034398 | Sensitive | lineage4.4.1.1 | za | SRR4034394 | Sensitive | lineage4.4.1.1 | za | ERR502912 | Other | lineage2.2.1 | None | SRR4034395 | Sensitive | lineage4.4.1.1 | za | SRR4034397 | Sensitive | lineage4.4.1.1 | za | SRR4034396 | Sensitive | lineage4.4.1.1 | za | SRR4034407 | Sensitive | lineage4.4.1.1 | za | SRR4034401 | Sensitive | lineage4.4.1.1 | za | SRR4034399 | Sensitive | lineage4.4.1.1 | za | SRR4034405 | Sensitive | lineage4.4.1.1 | za | SRR4034402 | Sensitive | lineage4.4.1.1 | za | SRR4034404 | Sensitive | lineage4.4.1.1 | za | SRR4034410 | Sensitive | lineage4.4.1.1 | za | SRR4034408 | Sensitive | lineage4.4.1.1 | za | SRR4034406 | Sensitive | lineage4.4.1.1 | za | SRR4034411 | Sensitive | lineage4.4.1.1 | za | SRR4034409 | Sensitive | lineage4.4.1.1 | za | SRR4034419 | Sensitive | lineage4.4.1.1 | None | SRR4034413 | Sensitive | lineage4.4.1.1 | za | SRR4034412 | Sensitive | lineage4.4.1.1 | za | SRR4034420 | Sensitive | lineage4.4.1.1 | za | SRR4034415 | Sensitive | lineage4.4.1.1 | za | SRR4034416 | Sensitive | lineage4.4.1.1 | za | SRR4034421 | Sensitive | lineage4.4.1.1 | za | SRR4034418 | Sensitive | lineage4.4.1.1 | za | SRR4034417 | Sensitive | lineage4.4.1.1 | za | SRR4034422 | Sensitive | lineage4.4.1.1 | za | SRR4034424 | Sensitive | lineage4.4.1.1 | za | SRR4034423 | Sensitive | lineage4.4.1.1 | za | SRR4034429 | Sensitive | lineage4.4.1.1 | za | SRR4034428 | Sensitive | lineage4.4.1.1 | za | SRR4034427 | Sensitive | lineage4.4.1.1 | za | SRR4034426 | Sensitive | lineage4.4.1.1 | za | SRR4034433 | Sensitive | lineage4.4.1.1 | za | SRR4034431 | Sensitive | lineage4.4.1.1 | za | SRR4034435 | Sensitive | lineage4.4.1.1 | za | ERR2446566 | Other | lineage4.1 | None | ERR551704 | Sensitive | La2 | None | ERR4817735 | Other | lineage4.8 | None | ERR4818021 | Other | La1.8.1 | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR1035162 | Other | None | ERR2513470 | Other | lineage4.2.2.2 | None | ERR234659 | HR-TB | None | ERR2229143 | Other | lineage4.1.1 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR2503463 | Sensitive | lineage4.8 | fi | SRR5341456 | Other | None | ERR4818615 | Other | None | ERR2446570 | Sensitive | lineage4.8 | nl | ERR4818607 | Sensitive | lineage4.9 | None | SRR5341332 | Pre-XDR-TB | lineage3 | None | ERR2514692 | Other | None | ERR4819932 | Other | lineage4.7 | None | SRR5341418 | Other | None | ERR1035138 | MDR-TB | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341302 | HR-TB | None | SRR6045450 | Other | lineage4.9 | None | SRR5341333 | HR-TB | None | ERR6359082 | Other | lineage4.9 | None | SRR5341330 | HR-TB | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR2693238 | HR-TB | lineage4.9 | None | ERR2693239 | HR-TB | None | SRR6045555 | HR-TB | None | SRR6045503 | HR-TB | None | SRR6045526 | HR-TB | None | SRR6045519 | HR-TB | None | ERR2660539 | Other | lineage4.9 | None | ERR278594 | HR-TB | None | ERR2693227 | Other | lineage4.9 | None | ERR4827864 | HR-TB | lineage4.8 | None | ERR4821655 | Sensitive | lineage4 | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | ERR551706 | Sensitive | La2 | cg | SRR6046492 | Other | None | SRR6046133 | HR-TB | None | SRR6044790 | HR-TB | None | SRR6044855 | Other | lineage4.9 | None | SRR6044875 | HR-TB | lineage4.9 | None | ERR2446563 | Other | lineage2.2.1 | nl | SRR6044838 | Other | lineage4.9 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6045952 | HR-TB | None | SRR6045053 | Other | None | SRR6045158 | Other | lineage4.9 | None | SRR6045217 | Other | lineage4 | None | SRR6046046 | Other | None | SRR6045233 | HR-TB | None | SRR6046210 | Other | lineage4 | None | SRR6046066 | HR-TB | None | SRR6045327 | HR-TB | None | SRR6045399 | Other | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6046305 | Other | lineage4.9 | None | SRR6046299 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6046382 | HR-TB | lineage2.2.1 | None | ERR3275196 | Other | lineage2.2.1 | nl | SRR6325448 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6325447 | HR-TB | None | SRR6046824 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6325442 | HR-TB | None | SRR6785267 | Other | lineage2.2.1 | None | ERR3077978 | Other | lineage1.1 | None | ERR323034 | HR-TB | lineage3.1 | None | SRR6785227 | Other | lineage2.2.1 | None | SRR6785262 | Sensitive | lineage4.2.1 | None | SRR6785263 | Sensitive | lineage2.2.1 | None | SRR6785268 | Sensitive | lineage4.2.1 | None | ERR4831117 | HR-TB | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR294248 | HR-TB | None | SRR6832178 | HR-TB | lineage4.2.1.1 | None | ERR294266 | HR-TB | None | SRR6789626 | Other | None | SRR6832787 | RR-TB | lineage2.2.1 | None | ERR323036 | HR-TB | None | ERR502532 | HR-TB | None | ERR5311099 | HR-TB | None | ERR502889 | Other | None | ERR502908 | HR-TB | lineage2.2.1 | None | ERR5311090 | HR-TB | None | ERR323038 | HR-TB | None | ERR5311081 | HR-TB | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR7496509 | Other | None | SRR7496517 | Other | None | SRR7496523 | Other | lineage4.7 | None | SRR7535086 | Other | None | SRR7585435 | Other | lineage4.9 | None | ERR1063862 | HR-TB | None | ERR323041 | HR-TB | None | ERR323055 | HR-TB | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR323063 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1034634 | HR-TB | None | ERR1034652 | Other | None | ERR1035157 | Other | lineage4.9 | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1063857 | HR-TB | None | ERR323043 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR067681 | HR-TB | None | ERR067699 | HR-TB | lineage4 | None | ERR1063858 | HR-TB | None | ERR1063859 | HR-TB | None | ERR1063896 | Sensitive | None | ERR3283031 | HR-TB | None | ERR108471 | HR-TB | lineage4 | None | ERR133825 | Sensitive | lineage4 | None | ERR133986 | HR-TB | None | ERR3283010 | Other | La1 | None | ERR3283017 | HR-TB | None | ERR3283014 | HR-TB | None | ERR3283025 | HR-TB | None | ERR3283028 | Other | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283027 | HR-TB | None | ERR3283032 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283051 | Other | lineage4.9 | None | ERR3283047 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR3445501 | HR-TB | None | ERR3439432 | Other | None | ERR3445502 | HR-TB | lineage4 | None | ERR3445503 | HR-TB | None | ERR3468544 | HR-TB | None | ERR5336148 | Other | None | ERR3797019 | Other | La1.8.1 | None | ERR3797016 | HR-TB | None | ERR3797015 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797043 | HR-TB | None | ERR3797046 | HR-TB | None | ERR3797036 | HR-TB | None | ERR3797048 | HR-TB | None | ERR3797058 | Other | lineage4.9 | None | ERR3797060 | Other | La1.8.1 | None | ERR3797067 | Other | La1.8.1 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797069 | Other | None | ERR3797063 | HR-TB | None | ERR3797073 | HR-TB | La1.8.1 | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797064 | Sensitive | None | ERR3797081 | Sensitive | lineage4 | None | ERR3797083 | HR-TB | None | ERR3797086 | Other | lineage4.9 | None | ERR3797087 | Sensitive | lineage4 | None | ERR4407463 | HR-TB | None | ERR4187734 | Other | La1.8.1 | None | ERR4188350 | HR-TB | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR387051 | HR-TB | None | ERR403298 | HR-TB | lineage4 | None | ERR473332 | Other | lineage4 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4769452 | HR-TB | None | ERR4769497 | HR-TB | La1.2 | None | ERR4769521 | HR-TB | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR4798262 | HR-TB | La1 | None | ERR4769450 | HR-TB | None | ERR4797204 | Other | lineage4.4.1.1 | in | ERR4797588 | MDR-TB | lineage3 | None | ERR4798406 | HR-TB | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4799025 | Pre-XDR-TB | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR4800341 | Other | lineage3 | None | ERR4810741 | HR-TB | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR4811105 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR4811493 | HR-TB | None | ERR6358991 | HR-TB | None | ERR5908228 | Other | lineage4.3.3 | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR6358837 | HR-TB | None | ERR6359070 | Other | lineage4.9 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR6866547 | Sensitive | lineage4 | None | ERR6866807 | HR-TB | lineage4 | None | ERR702404 | HR-TB | None | ERR702406 | HR-TB | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736835 | HR-TB | None | ERR736839 | Other | None | ERR736848 | HR-TB | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR736867 | HR-TB | None | ERR736875 | HR-TB | lineage4 | None | ERR736874 | HR-TB | None | ERR9117709 | HR-TB | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR8976043 | HR-TB | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9119669 | HR-TB | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9119096 | Other | lineage4.3.3 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786515 | Other | lineage4.1.2.1 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786843 | Other | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR9787030 | Sensitive | lineage6 | None | ERR9787153 | Other | lineage6.1.3 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9787165 | Other | lineage6 | None | SRR1165506 | Other | lineage4.1.2.1 | None | ERR9787197 | Other | None | SRR10808805 | Sensitive | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1169249 | Other | La3 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR1167384 | Other | lineage4 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1169194 | Other | None | SRR1169306 | Other | None | SRR1172728 | MDR-TB | None | SRR1172234 | Other | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1172817 | HR-TB | None | SRR1172844 | MDR-TB | lineage4.4.1.1 | None | SRR1173118 | Other | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1175074 | MDR-TB | None | SRR1173788 | Other | None | SRR1183145 | Other | lineage2.2.1 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1181328 | Other | lineage2.2.1 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1175090 | Other | lineage4.9 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR1183049 | Other | lineage2.2 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184372 | MDR-TB | None | SRR1196494 | MDR-TB | None | SRR12142341 | HR-TB | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR13423544 | Other | lineage4.5 | None | SRR1196677 | HR-TB | lineage2 | None | SRR12416824 | HR-TB | None | SRR13423543 | Pre-XDR-TB | lineage4.8 | None | SRR13861528 | HR-TB | lineage4.9 | None | SRR13837684 | Sensitive | lineage4.9 | None | SRR13861266 | Sensitive | lineage4.9 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR13837827 | Sensitive | lineage4.9 | None | SRR13861381 | MDR-TB | lineage4.9 | None | SRR13861413 | Sensitive | lineage4.9 | None | SRR13861434 | RR-TB | lineage4.9 | None | SRR13861556 | Other | lineage4.9 | None | SRR13861573 | Other | lineage4.9 | None | SRR1640750 | HR-TB | None | SRR14801749 | Sensitive | None | SRR1510066 | Other | lineage1.2.1.2.1 | None | SRR13861686 | RR-TB | lineage4.9 | None | SRR13861699 | Sensitive | lineage4.9 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR14782405 | HR-TB | None | SRR16087999 | Sensitive | lineage4.8 | None | SRR16088600 | Sensitive | lineage4.8 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR1791696 | Other | La1.8.1 | None | SRR19303884 | HR-TB | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR19304036 | HR-TB | None | SRR20969677 | HR-TB | lineage2 | None | SRR8692905 | HR-TB | None | SRR8692897 | Other | lineage4.9 | None | SRR8692807 | Other | lineage4.9 | None | SRR8692863 | Other | lineage4;lineage2.2 | None | SRR8692825 | Other | lineage4.9 | None | ERR4815604 | HR-TB | None | SRR8692887 | Other | None | SRR3675464 | HR-TB | lineage4.1 | None | ERR176778 | HR-TB | None | SRR3675502 | Other | None | ERR176779 | HR-TB | None | ERR176793 | Other | lineage4.1.1 | None | SRR3675482 | HR-TB | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | ERR158583 | HR-TB | None | SRR6325445 | HR-TB | None | SRR3675465 | HR-TB | None | ERR1035239 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR3675488 | HR-TB | None | SAMN02585910 | Other | lineage2.2.1 | None | ERR161033 | HR-TB | None | SRR3675501 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | ERR161039 | Sensitive | lineage4.3.4 | None | SRR3675486 | HR-TB | None | ERR181744 | HR-TB | None | SRR3675221 | HR-TB | None | SRR3675222 | Other | None | ERR176643 | HR-TB | None | ERR181824 | HR-TB | lineage4 | None | ERR3275201 | Sensitive | lineage4.8 | nl | SRR3675284 | HR-TB | lineage4.9 | None | SRR3675236 | HR-TB | None | SRR3675232 | Other | lineage4.1.2.1 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | SRR3675270 | HR-TB | None | ERR176568 | Other | lineage4.3 | None | ERR181887 | HR-TB | None | ERR176751 | HR-TB | None | ERR176651 | HR-TB | None | SRR3675311 | Other | None | SRR3675383 | HR-TB | None | SRR3675456 | HR-TB | None | SRR3675510 | Other | None | SRR4034432 | Sensitive | lineage4.4.1.1 | za |
|---|
