TB-Profiler result

Run: ERR9787153

Summary

Run ID: ERR9787153

Sample name:

Date: 02-04-2023 13:03:02

Number of reads: 2672762

Percentage reads mapped: 82.28

Strain: lineage6.1.3

Drug-resistance: Other


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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage6 West-Africa 2 AFRI_1 RD702 0.94
lineage6.1 West-Africa 2 AFRI_1 RD702 0.38
lineage6.1.3 West-Africa 2 AFRI_1 RD702 0.99
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
embC 4240781 p.Ala307Thr missense_variant 0.89 ethambutol
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6214 c.975G>C synonymous_variant 0.2
gyrB 6238 c.999G>A synonymous_variant 0.17
gyrB 6242 p.Arg335Asn missense_variant 0.18
gyrB 6250 c.1011A>G synonymous_variant 0.17
gyrA 6362 c.-940T>C upstream_gene_variant 0.18
gyrB 6446 p.Ala403Ser missense_variant 0.94
gyrA 6680 c.-622C>T upstream_gene_variant 0.16
gyrA 6700 c.-602T>C upstream_gene_variant 0.17
gyrA 6706 c.-596G>A upstream_gene_variant 0.17
gyrA 6730 c.-572A>G upstream_gene_variant 0.18
gyrA 6760 c.-542G>C upstream_gene_variant 0.19
gyrA 6775 c.-527G>C upstream_gene_variant 0.21
gyrB 6797 p.Gly520Ser missense_variant 0.25
gyrA 6803 c.-499C>T upstream_gene_variant 0.26
gyrA 6824 c.-478C>T upstream_gene_variant 0.21
gyrA 6841 c.-461T>C upstream_gene_variant 0.21
gyrA 6856 c.-446T>C upstream_gene_variant 0.18
gyrA 6862 c.-440C>G upstream_gene_variant 0.17
gyrA 6878 c.-424T>C upstream_gene_variant 0.17
gyrA 6889 c.-413G>C upstream_gene_variant 0.19
gyrA 6904 c.-398C>G upstream_gene_variant 0.17
gyrA 6916 c.-386G>C upstream_gene_variant 0.17
gyrA 6919 c.-383T>C upstream_gene_variant 0.17
gyrA 6925 c.-377T>C upstream_gene_variant 0.17
gyrA 6931 c.-371A>G upstream_gene_variant 0.17
gyrA 6949 c.-353A>G upstream_gene_variant 0.17
gyrA 6952 c.-350C>G upstream_gene_variant 0.18
gyrA 6970 c.-332C>T upstream_gene_variant 0.16
gyrA 6982 c.-320A>C upstream_gene_variant 0.17
gyrA 7006 c.-296T>C upstream_gene_variant 0.17
gyrA 7012 c.-290G>C upstream_gene_variant 0.17
gyrA 7033 c.-269G>C upstream_gene_variant 0.17
gyrA 7162 c.-140C>A upstream_gene_variant 0.15
gyrB 7185 p.Ser649Phe missense_variant 0.85
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7412 c.111C>G synonymous_variant 0.16
gyrA 7436 c.135C>T synonymous_variant 0.16
gyrA 7442 c.141G>C synonymous_variant 0.17
gyrA 7457 c.156T>C synonymous_variant 0.18
gyrA 7463 c.162G>C synonymous_variant 0.18
gyrA 7480 p.Phe60Tyr missense_variant 0.2
gyrA 7484 c.183T>C synonymous_variant 0.2
gyrA 7532 c.231T>G synonymous_variant 0.22
gyrA 7541 c.240C>G synonymous_variant 0.2
gyrA 7547 c.246C>T synonymous_variant 0.2
gyrA 7565 c.264C>T synonymous_variant 0.19
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 7587 c.286C>T synonymous_variant 0.16
gyrA 8330 c.1029C>G synonymous_variant 0.17
gyrA 8339 c.1038A>C synonymous_variant 0.17
gyrA 8382 p.Leu361Met missense_variant 0.15
gyrA 8411 c.1110C>G synonymous_variant 0.16
gyrA 8447 c.1146C>G synonymous_variant 0.17
gyrA 8453 c.1152A>C synonymous_variant 0.17
gyrA 8459 c.1158G>A synonymous_variant 0.18
gyrA 8462 c.1161A>G synonymous_variant 0.18
gyrA 8480 c.1179C>T synonymous_variant 0.16
gyrA 8486 c.1185T>C synonymous_variant 0.17
gyrA 8493 p.Leu398Phe missense_variant 0.84
gyrA 8603 c.1302A>G synonymous_variant 0.19
gyrA 8609 c.1308G>C synonymous_variant 0.18
gyrA 8619 c.1318T>C synonymous_variant 0.19
gyrA 8633 c.1332C>G synonymous_variant 0.19
gyrA 8636 c.1335A>C synonymous_variant 0.19
gyrA 8729 c.1428T>C synonymous_variant 0.17
gyrA 8731 p.Gly477Ala missense_variant 0.17
gyrA 8751 p.Ala484Asn missense_variant 0.17
gyrA 8759 c.1458C>T synonymous_variant 0.16
gyrA 8767 p.Arg489Lys missense_variant 0.16
gyrA 8783 c.1482G>C synonymous_variant 0.19
gyrA 8786 c.1485T>C synonymous_variant 0.19
gyrA 8796 p.Ile499Val missense_variant 0.21
gyrA 8806 p.Asp502Gly missense_variant 0.79
gyrA 8810 c.1509A>G synonymous_variant 0.2
gyrA 8813 p.Asp504Glu missense_variant 0.2
gyrA 8828 c.1527T>C synonymous_variant 0.21
gyrA 8829 c.1528T>C synonymous_variant 0.21
gyrA 8852 c.1551T>C synonymous_variant 0.21
gyrA 8858 c.1557T>G synonymous_variant 0.21
gyrA 8870 c.1569G>C synonymous_variant 0.2
gyrA 8873 c.1572A>C synonymous_variant 0.19
gyrA 8897 c.1596T>C synonymous_variant 0.17
gyrA 8903 c.1602T>C synonymous_variant 0.17
gyrA 8939 c.1638T>C synonymous_variant 0.2
gyrA 8942 c.1641G>C synonymous_variant 0.2
gyrA 8946 c.1645_1647delTTGinsCTC synonymous_variant 0.19
gyrA 8998 p.Leu566Trp missense_variant 0.18
gyrA 9023 c.1722A>T synonymous_variant 0.22
gyrA 9029 c.1728T>G synonymous_variant 0.23
gyrA 9050 p.Asp583Glu missense_variant 0.22
gyrA 9051 c.1750T>C synonymous_variant 0.23
gyrA 9062 c.1761C>G synonymous_variant 0.22
gyrA 9068 c.1767G>C synonymous_variant 0.22
gyrA 9080 c.1779G>C synonymous_variant 0.21
gyrA 9083 c.1782G>A synonymous_variant 0.2
gyrA 9099 c.1798_1800delTTAinsCTG synonymous_variant 0.2
gyrA 9113 c.1812C>G synonymous_variant 0.21
gyrA 9119 c.1818A>G synonymous_variant 0.21
gyrA 9128 c.1827C>G synonymous_variant 0.22
gyrA 9143 c.1842T>C synonymous_variant 1.0
gyrA 9147 p.Gly616Ser missense_variant 0.24
gyrA 9153 p.Thr618Glu missense_variant 0.21
gyrA 9182 c.1881T>C synonymous_variant 0.24
gyrA 9191 c.1890G>C synonymous_variant 0.25
gyrA 9200 c.1899A>G synonymous_variant 0.26
gyrA 9204 p.Ser635Thr missense_variant 0.26
gyrA 9210 c.1909C>T synonymous_variant 0.27
gyrA 9230 c.1929T>C synonymous_variant 0.26
gyrA 9233 c.1932C>T synonymous_variant 0.24
gyrA 9242 c.1941A>C synonymous_variant 0.23
gyrA 9252 p.Val651Ile missense_variant 0.22
gyrA 9263 c.1962C>T synonymous_variant 0.21
gyrA 9268 p.Asn656Ser missense_variant 0.21
gyrA 9284 c.1983T>C synonymous_variant 0.2
gyrA 9293 c.1992G>C synonymous_variant 0.18
gyrA 9296 c.1995T>C synonymous_variant 0.17
gyrA 9304 p.Gly668Asp missense_variant 1.0
gyrA 9323 c.2022C>G synonymous_variant 0.16
fgd1 491668 p.Lys296Glu missense_variant 0.95
fgd1 491742 c.960T>C synonymous_variant 1.0
ccsA 620198 p.Gln103Leu missense_variant 0.16
rpoB 760855 p.Thr350Ile missense_variant 0.87
rpoB 760925 c.1119T>C synonymous_variant 0.16
rpoB 760969 p.Ser388Phe missense_variant 0.76
rpoB 760973 c.1167G>C synonymous_variant 0.23
rpoB 760982 c.1176G>C synonymous_variant 0.26
rpoB 760985 c.1179G>C synonymous_variant 0.26
rpoB 760991 c.1185G>C synonymous_variant 0.27
rpoB 761015 c.1209G>C synonymous_variant 0.23
rpoB 761021 c.1215G>C synonymous_variant 0.23
rpoB 761027 c.1221A>G synonymous_variant 0.23
rpoB 761037 c.1231T>C synonymous_variant 0.21
rpoB 761097 c.1291_1293delAGCinsTCG synonymous_variant 0.18
rpoB 761102 c.1296A>G synonymous_variant 0.19
rpoB 761150 c.1344A>C synonymous_variant 0.18
rpoB 761165 c.1359G>C synonymous_variant 0.17
rpoB 761168 c.1362C>G synonymous_variant 0.17
rpoB 761180 c.1374A>C synonymous_variant 0.19
rpoB 761189 c.1383T>C synonymous_variant 0.2
rpoB 761195 c.1389G>C synonymous_variant 0.21
rpoB 761231 c.1425C>T synonymous_variant 0.21
rpoB 761234 c.1428G>C synonymous_variant 0.21
rpoB 761249 c.1443A>G synonymous_variant 0.22
rpoB 761255 c.1449T>G synonymous_variant 0.19
rpoB 761261 c.1455G>T synonymous_variant 0.19
rpoB 761264 c.1458C>G synonymous_variant 0.2
rpoB 761288 c.1482G>T synonymous_variant 0.18
rpoB 761723 p.Glu639Asp missense_variant 1.0
rpoB 761972 c.2166C>T synonymous_variant 0.16
rpoB 761999 c.2193G>C synonymous_variant 0.17
rpoB 762053 c.2247T>C synonymous_variant 0.19
rpoB 762062 c.2256T>C synonymous_variant 0.18
rpoB 762065 c.2259T>C synonymous_variant 0.18
rpoB 762083 c.2277T>C synonymous_variant 0.2
rpoB 762086 c.2280G>C synonymous_variant 0.2
rpoB 762101 c.2295C>G synonymous_variant 0.22
rpoB 762110 c.2304G>C synonymous_variant 0.22
rpoB 762114 p.Ile770Val missense_variant 0.23
rpoB 762128 c.2322G>C synonymous_variant 0.22
rpoB 762140 c.2334G>C synonymous_variant 0.22
rpoB 762143 c.2337T>C synonymous_variant 0.21
rpoB 762149 c.2343G>C synonymous_variant 0.22
rpoB 762161 c.2355C>G synonymous_variant 0.25
rpoB 762167 c.2361T>G synonymous_variant 0.26
rpoB 762185 c.2379G>C synonymous_variant 0.26
rpoB 762233 c.2427G>C synonymous_variant 0.28
rpoB 762254 c.2448T>G synonymous_variant 0.27
rpoB 762257 c.2451C>G synonymous_variant 0.27
rpoB 762284 c.2478G>C synonymous_variant 0.21
rpoB 762293 c.2487T>C synonymous_variant 0.21
rpoB 762317 c.2511A>G synonymous_variant 0.2
rpoB 762329 c.2523G>C synonymous_variant 0.21
rpoB 762338 c.2532T>C synonymous_variant 0.22
rpoB 762347 c.2541T>C synonymous_variant 0.2
rpoB 762362 p.Glu852Asp missense_variant 0.21
rpoB 762369 c.2563T>C synonymous_variant 0.22
rpoC 762380 c.-990T>C upstream_gene_variant 0.2
rpoC 762395 c.-975G>C upstream_gene_variant 0.21
rpoC 762404 c.-966T>C upstream_gene_variant 0.18
rpoC 762410 c.-960T>C upstream_gene_variant 0.18
rpoC 762416 c.-954A>G upstream_gene_variant 0.19
rpoC 762434 c.-936T>C upstream_gene_variant 0.17
rpoC 762443 c.-927G>C upstream_gene_variant 0.18
rpoC 762509 c.-861T>G upstream_gene_variant 0.18
rpoB 762510 p.Ala902Pro missense_variant 0.18
rpoC 762533 c.-837T>C upstream_gene_variant 0.16
rpoC 762551 c.-819C>T upstream_gene_variant 0.15
rpoB 762630 p.Ala942Thr missense_variant 0.16
rpoC 762641 c.-729G>C upstream_gene_variant 0.17
rpoC 762710 c.-660G>A upstream_gene_variant 0.18
rpoC 762728 c.-642C>G upstream_gene_variant 0.19
rpoC 762749 c.-621C>G upstream_gene_variant 0.22
rpoC 762753 c.-617T>C upstream_gene_variant 0.21
rpoB 762759 p.Cys985Ala missense_variant 0.21
rpoC 762782 c.-588T>C upstream_gene_variant 0.21
rpoB 762785 p.Asp993Glu missense_variant 0.22
rpoB 762795 p.Asp997Asn missense_variant 0.25
rpoB 762799 p.Ala998Gly missense_variant 0.25
rpoC 762812 c.-558C>G upstream_gene_variant 0.24
rpoB 762813 p.Met1003Val missense_variant 0.24
rpoC 762818 c.-552C>G upstream_gene_variant 0.22
rpoC 762827 c.-543G>C upstream_gene_variant 0.23
rpoC 762857 c.-513C>G upstream_gene_variant 0.25
rpoB 762868 p.Tyr1021Phe missense_variant 0.24
rpoC 762929 c.-441G>C upstream_gene_variant 0.24
rpoC 762995 c.-375G>C upstream_gene_variant 0.22
rpoC 763028 c.-342T>C upstream_gene_variant 0.19
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoC 763034 c.-336C>G upstream_gene_variant 0.18
rpoC 763040 c.-330C>G upstream_gene_variant 0.2
rpoC 763070 c.-300T>C upstream_gene_variant 0.21
rpoC 763085 c.-285C>G upstream_gene_variant 0.21
rpoC 763142 c.-228C>G upstream_gene_variant 0.18
rpoC 763528 c.159G>A synonymous_variant 0.18
rpoC 763537 c.168C>G synonymous_variant 0.19
rpoC 763546 c.177A>G synonymous_variant 0.2
rpoC 763570 c.201G>C synonymous_variant 0.22
rpoC 763573 c.204G>C synonymous_variant 0.23
rpoC 763594 c.225C>T synonymous_variant 0.23
rpoC 763633 c.264T>C synonymous_variant 0.19
rpoC 763636 c.267T>C synonymous_variant 0.19
rpoC 763660 c.291T>G synonymous_variant 0.19
rpoC 763663 c.294C>G synonymous_variant 0.19
rpoC 763669 c.300C>G synonymous_variant 0.2
rpoC 763672 c.303C>G synonymous_variant 0.19
rpoC 763675 c.306C>G synonymous_variant 0.19
rpoC 763702 c.333C>G synonymous_variant 0.21
rpoC 763708 c.339G>C synonymous_variant 0.21
rpoC 763714 c.345G>C synonymous_variant 0.22
rpoC 763717 c.348T>C synonymous_variant 0.21
rpoC 763723 c.354G>C synonymous_variant 0.21
rpoC 763732 c.363C>G synonymous_variant 0.23
rpoC 763741 c.372C>T synonymous_variant 0.24
rpoC 763744 c.375G>C synonymous_variant 0.23
rpoC 763765 c.396T>C synonymous_variant 0.27
rpoC 763768 c.399C>G synonymous_variant 0.27
rpoC 763780 c.411C>G synonymous_variant 0.28
rpoC 763792 p.Glu141Asp missense_variant 0.29
rpoC 763807 c.438T>C synonymous_variant 0.3
rpoC 763816 c.447C>G synonymous_variant 0.31
rpoC 763835 p.Ala156Met missense_variant 0.3
rpoC 763851 p.Ala161Gly missense_variant 0.32
rpoC 763855 c.486C>T synonymous_variant 0.33
rpoC 763858 c.489A>G synonymous_variant 0.33
rpoC 763872 p.Gly168Ala missense_variant 0.31
rpoC 763876 c.507A>G synonymous_variant 0.31
rpoC 763879 c.510A>G synonymous_variant 0.29
rpoC 763888 c.519G>C synonymous_variant 0.29
rpoC 763894 c.525A>G synonymous_variant 0.28
rpoC 763900 c.531G>C synonymous_variant 0.29
rpoC 763906 c.537C>G synonymous_variant 0.3
rpoC 763945 c.576T>C synonymous_variant 0.27
rpoC 763960 c.591T>C synonymous_variant 0.26
rpoC 763996 c.627T>C synonymous_variant 0.26
rpoC 764005 c.636G>C synonymous_variant 0.25
rpoC 764024 c.655T>C synonymous_variant 0.23
rpoC 764044 c.675T>C synonymous_variant 0.23
rpoC 764059 c.690G>C synonymous_variant 0.23
rpoC 764083 c.714A>G synonymous_variant 0.2
rpoC 764098 c.729A>G synonymous_variant 0.21
rpoC 764119 c.750G>A synonymous_variant 0.2
rpoC 764131 c.762T>C synonymous_variant 0.21
rpoC 764188 c.819A>G synonymous_variant 0.24
rpoC 764194 p.Glu275Asp missense_variant 0.25
rpoC 764203 c.834G>T synonymous_variant 0.26
rpoC 764206 c.837T>C synonymous_variant 0.26
rpoC 764242 c.873C>T synonymous_variant 0.25
rpoC 764245 c.876C>T synonymous_variant 0.25
rpoC 764246 c.877_879delCTCinsTTG synonymous_variant 0.25
rpoC 764257 c.888G>C synonymous_variant 0.26
rpoC 764266 c.897T>C synonymous_variant 0.28
rpoC 764269 c.900G>C synonymous_variant 0.28
rpoC 764278 c.909A>G synonymous_variant 0.3
rpoC 764338 c.969G>A synonymous_variant 0.29
rpoC 764365 c.996C>T synonymous_variant 0.31
rpoC 764380 c.1011G>C synonymous_variant 0.29
rpoC 764381 c.1012_1013delTCinsAG synonymous_variant 0.29
rpoC 764387 c.1018_1020delTTGinsCTC synonymous_variant 0.29
rpoC 764405 c.1036_1038delAGGinsCGC synonymous_variant 0.28
rpoC 764431 c.1062G>C synonymous_variant 0.23
rpoC 764434 c.1065A>G synonymous_variant 0.24
rpoC 764446 c.1077T>C synonymous_variant 0.17
rpoC 764449 c.1080G>C synonymous_variant 0.17
rpoC 764452 c.1083T>C synonymous_variant 0.17
rpoC 764458 c.1089G>C synonymous_variant 0.17
rpoC 764461 c.1092A>G synonymous_variant 0.18
rpoC 764497 c.1128A>G synonymous_variant 0.17
rpoC 764527 c.1158C>T synonymous_variant 0.16
rpoC 764554 c.1185C>T synonymous_variant 0.15
rpoC 764566 c.1197C>G synonymous_variant 0.16
rpoC 764611 c.1242G>T synonymous_variant 0.18
rpoC 764626 c.1257C>T synonymous_variant 0.19
rpoC 764632 c.1263T>C synonymous_variant 0.19
rpoC 764644 c.1275G>C synonymous_variant 0.2
rpoC 764650 c.1281G>T synonymous_variant 0.2
rpoC 764695 c.1326T>C synonymous_variant 0.2
rpoC 764749 c.1380G>C synonymous_variant 0.18
rpoC 764752 c.1383G>C synonymous_variant 0.18
rpoC 764888 c.1519T>C synonymous_variant 0.17
rpoC 764893 c.1524T>C synonymous_variant 0.18
rpoC 764911 c.1542A>G synonymous_variant 0.18
rpoC 764932 c.1563C>G synonymous_variant 0.17
rpoC 764968 c.1599T>C synonymous_variant 0.17
rpoC 765019 c.1650A>G synonymous_variant 0.21
rpoC 765040 c.1671T>C synonymous_variant 0.21
rpoC 765041 c.1672T>C synonymous_variant 0.21
rpoC 765047 c.1678T>C synonymous_variant 0.23
rpoC 765076 c.1707A>G synonymous_variant 0.17
rpoC 765079 c.1710T>C synonymous_variant 0.17
rpoC 765082 c.1713G>C synonymous_variant 0.17
rpoC 765085 c.1716T>C synonymous_variant 0.18
rpoC 765089 c.1720T>C synonymous_variant 0.18
rpoC 765100 c.1731G>C synonymous_variant 0.19
rpoC 765103 c.1734G>A synonymous_variant 0.18
rpoC 765454 c.2085C>G synonymous_variant 0.2
rpoC 765466 c.2097C>T synonymous_variant 0.21
rpoC 765478 c.2109T>C synonymous_variant 0.22
rpoC 765517 c.2148C>G synonymous_variant 0.24
rpoC 765529 c.2160C>G synonymous_variant 0.25
rpoC 765541 c.2172C>G synonymous_variant 0.23
rpoC 765553 c.2184C>T synonymous_variant 0.23
rpoC 765556 c.2187G>C synonymous_variant 0.23
rpoC 765562 c.2193G>C synonymous_variant 0.23
rpoC 765613 p.His748Gln missense_variant 0.2
rpoC 765628 c.2259G>C synonymous_variant 0.22
rpoC 765694 c.2325G>C synonymous_variant 0.18
rpoC 765727 c.2358T>C synonymous_variant 0.16
rpoC 765753 p.Asp795Ala missense_variant 0.16
rpoC 765784 c.2415C>G synonymous_variant 0.16
rpoC 765787 c.2418C>T synonymous_variant 0.16
rpoC 765793 c.2424C>G synonymous_variant 0.17
rpoC 765796 c.2427C>T synonymous_variant 0.17
rpoC 765811 c.2442T>C synonymous_variant 0.16
rpoC 765892 c.2523T>C synonymous_variant 0.19
rpoC 765904 c.2535C>G synonymous_variant 0.2
rpoC 765967 c.2598C>T synonymous_variant 0.19
rpoC 765979 c.2610C>G synonymous_variant 0.18
rpoC 765994 c.2625A>T synonymous_variant 0.17
rpoC 766021 c.2652G>C synonymous_variant 0.16
rpoC 766027 c.2658G>C synonymous_variant 0.16
rpoC 766043 p.Gln892Glu missense_variant 0.16
rpoC 766069 c.2700G>A synonymous_variant 0.16
rpoC 766083 p.Ala905Glu missense_variant 0.16
rpoC 766151 p.Asp928Asn missense_variant 0.15
rpoC 766207 c.2838T>C synonymous_variant 0.17
rpoC 766231 c.2862T>C synonymous_variant 1.0
rpoC 766273 c.2904T>C synonymous_variant 0.17
rpoC 766280 p.Ser971Gly missense_variant 0.17
rpoC 766312 c.2943T>G synonymous_variant 0.21
rpoC 766321 c.2952C>G synonymous_variant 0.2
rpoC 766345 c.2976T>C synonymous_variant 0.22
rpoC 766348 c.2979A>G synonymous_variant 0.21
rpoC 766363 c.2994G>C synonymous_variant 0.2
rpoC 766384 c.3015A>G synonymous_variant 0.18
rpoC 766390 c.3021C>A synonymous_variant 0.18
rpoC 766402 c.3033C>G synonymous_variant 0.18
rpoC 766408 c.3039C>G synonymous_variant 0.17
rpoC 766426 c.3057C>T synonymous_variant 0.21
rpoC 766447 c.3078T>G synonymous_variant 0.17
rpoC 766459 c.3090G>T synonymous_variant 0.18
rpoC 766483 c.3114G>C synonymous_variant 0.22
rpoC 766486 c.3117A>G synonymous_variant 0.22
rpoC 766492 c.3123T>C synonymous_variant 0.24
rpoC 766522 c.3153C>G synonymous_variant 0.24
rpoC 766525 c.3156G>C synonymous_variant 0.24
rpoC 766528 c.3159T>G synonymous_variant 0.25
rpoC 766543 c.3174C>T synonymous_variant 0.29
rpoC 766573 c.3204T>C synonymous_variant 0.27
rpoC 766585 c.3216T>C synonymous_variant 0.27
rpoC 766594 c.3225G>C synonymous_variant 0.27
rpoC 766607 p.Ile1080Leu missense_variant 0.24
rpoC 766630 c.3261G>C synonymous_variant 0.23
rpoC 766635 p.Phe1089Tyr missense_variant 0.23
rpoC 766645 p.Glu1092Asp missense_variant 0.22
rpoC 766651 c.3282T>C synonymous_variant 0.21
rpoC 766657 c.3288A>G synonymous_variant 0.19
rpoC 766658 p.Arg1097Gly missense_variant 0.19
rpoC 766666 c.3297C>G synonymous_variant 0.21
rpoC 766726 c.3357T>C synonymous_variant 0.18
rpoC 766738 c.3369G>C synonymous_variant 0.24
rpoC 766765 c.3396A>C synonymous_variant 0.24
rpoC 766774 c.3405T>C synonymous_variant 0.23
rpoC 766804 c.3435A>G synonymous_variant 0.18
rpoC 766861 c.3492G>C synonymous_variant 0.19
rpoC 766864 c.3495G>C synonymous_variant 0.18
rpoC 766894 c.3525T>C synonymous_variant 0.23
rpoC 766895 c.3526T>C synonymous_variant 0.23
rpoC 766900 c.3531T>C synonymous_variant 0.22
rpoC 766918 c.3549C>T synonymous_variant 0.21
rpoC 766924 c.3555G>A synonymous_variant 0.2
rpoC 766933 c.3564A>G synonymous_variant 0.21
rpoC 766945 c.3576A>G synonymous_variant 0.2
rpoC 766963 c.3594T>C synonymous_variant 0.2
rpoC 766972 c.3603G>C synonymous_variant 0.21
rpoC 766996 c.3627C>T synonymous_variant 0.17
rpoC 767009 c.3640_3642delTCGinsAGC synonymous_variant 0.19
rpoC 767014 c.3645G>C synonymous_variant 0.2
rpoC 767033 c.3664_3666delTCGinsAGT synonymous_variant 0.23
rpoC 767059 c.3690T>G synonymous_variant 0.23
rpoC 767062 c.3693C>A synonymous_variant 0.24
rpoC 767098 c.3729T>C synonymous_variant 0.25
rpoC 767119 c.3750A>G synonymous_variant 0.25
rpoC 767134 c.3765C>A synonymous_variant 0.23
rpoC 767158 c.3789T>C synonymous_variant 0.22
rpoC 767167 c.3798C>T synonymous_variant 0.23
rpoC 767180 p.Ala1271Gln missense_variant 0.2
rpoC 767209 c.3840T>C synonymous_variant 0.19
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781649 c.90T>C synonymous_variant 0.17
rpsL 781655 c.96T>C synonymous_variant 0.18
rpsL 781682 c.123T>C synonymous_variant 0.19
rpsL 781715 c.156T>C synonymous_variant 0.21
rpsL 781718 c.159C>G synonymous_variant 0.21
rpsL 781724 c.165G>C synonymous_variant 0.23
rpsL 781728 c.169T>C synonymous_variant 0.24
rpsL 781736 c.177T>C synonymous_variant 0.24
rpsL 781760 c.201T>C synonymous_variant 0.24
rpsL 781808 c.249C>T synonymous_variant 0.23
rpsL 781811 c.252C>T synonymous_variant 0.23
rpsL 781820 c.261G>T synonymous_variant 0.24
rpsL 781832 c.273T>C synonymous_variant 0.2
rpsL 781835 c.276T>C synonymous_variant 0.21
rpsL 781838 c.279G>C synonymous_variant 0.21
rpsL 781841 c.282C>G synonymous_variant 0.21
rpsL 781865 c.306G>C synonymous_variant 0.19
rpsL 781868 c.309T>C synonymous_variant 0.18
rpsL 781871 c.312G>C synonymous_variant 0.18
rpsL 781877 c.318T>C synonymous_variant 0.18
rpsL 781892 c.333A>G synonymous_variant 0.18
rpsL 781898 c.339A>T synonymous_variant 0.17
rpsL 781916 c.357T>C synonymous_variant 0.18
rpsL 781929 p.Gly124Ser missense_variant 0.18
rpsL 781933 c.374G>A splice_region_variant&stop_retained_variant 0.19
rplC 800771 c.-38C>T upstream_gene_variant 0.15
rplC 801156 c.348T>C synonymous_variant 0.16
rplC 801174 c.366T>C synonymous_variant 0.18
rplC 801210 c.402T>C synonymous_variant 0.18
rplC 801222 c.414T>C synonymous_variant 0.18
rplC 801228 c.420T>C synonymous_variant 0.18
rplC 801249 c.441T>G synonymous_variant 0.19
rplC 801255 c.447C>T synonymous_variant 0.19
rplC 801264 c.456C>T synonymous_variant 0.18
rplC 801276 c.468G>T synonymous_variant 0.17
rplC 801279 c.471G>C synonymous_variant 0.17
rplC 801282 c.474G>T synonymous_variant 0.17
rplC 801385 c.577C>T synonymous_variant 0.17
fbiC 1302899 c.-32A>G upstream_gene_variant 1.0
fbiC 1303846 p.Phe306His missense_variant 0.17
fbiC 1303854 c.924T>C synonymous_variant 0.17
fbiC 1303860 c.930A>G synonymous_variant 0.18
fbiC 1303869 c.939T>C synonymous_variant 0.18
fbiC 1303878 c.948G>C synonymous_variant 0.17
fbiC 1303908 c.978C>A synonymous_variant 0.17
fbiC 1303911 c.981G>C synonymous_variant 0.19
fbiC 1303935 c.1005G>C synonymous_variant 0.22
fbiC 1303947 c.1017T>G synonymous_variant 0.25
fbiC 1303948 p.Gly340Arg missense_variant 0.25
fbiC 1303953 p.Asp341Glu missense_variant 0.25
fbiC 1303961 p.Arg344Leu missense_variant 0.23
fbiC 1303965 c.1035G>C synonymous_variant 0.22
fbiC 1303969 p.Val347Ile missense_variant 0.21
fbiC 1303972 p.Gly348Arg missense_variant 0.21
fbiC 1303998 c.1068T>C synonymous_variant 0.19
fbiC 1304004 c.1074A>G synonymous_variant 0.19
fbiC 1304008 c.1078T>C synonymous_variant 0.21
fbiC 1304049 c.1119T>C synonymous_variant 0.2
fbiC 1304056 p.Glu376Gln missense_variant 0.2
fbiC 1304064 c.1134G>C synonymous_variant 0.19
fbiC 1304067 c.1137G>C synonymous_variant 0.2
fbiC 1304079 c.1149A>G synonymous_variant 0.21
fbiC 1304081 p.Ala384Gly missense_variant 0.2
fbiC 1304086 p.Tyr386His missense_variant 0.2
fbiC 1304091 p.Asp387Glu missense_variant 0.2
fbiC 1304092 p.Met388Leu missense_variant 0.19
fbiC 1304097 c.1167G>A synonymous_variant 0.19
fbiC 1304115 c.1185A>G synonymous_variant 0.22
fbiC 1304127 c.1197A>C synonymous_variant 0.2
fbiC 1304133 c.1203G>C synonymous_variant 0.19
fbiC 1304154 c.1224G>C synonymous_variant 0.21
fbiC 1304169 c.1239T>C synonymous_variant 0.19
fbiC 1304172 c.1242G>C synonymous_variant 0.18
fbiC 1304173 p.Val415Leu missense_variant 0.18
fbiC 1304193 c.1263G>C synonymous_variant 0.18
fbiC 1304199 c.1269C>G synonymous_variant 0.17
fbiC 1304613 c.1683T>G synonymous_variant 0.16
fbiC 1304622 c.1692C>T synonymous_variant 0.16
fbiC 1304640 c.1710A>C synonymous_variant 0.16
fbiC 1304682 c.1752C>G synonymous_variant 0.2
fbiC 1304691 c.1761G>C synonymous_variant 0.2
fbiC 1304694 c.1764A>C synonymous_variant 0.2
fbiC 1304703 c.1773C>G synonymous_variant 0.21
fbiC 1304711 p.Ala594Glu missense_variant 0.22
fbiC 1304715 c.1785G>C synonymous_variant 0.21
fbiC 1304724 c.1794A>G synonymous_variant 0.23
fbiC 1304727 c.1797A>G synonymous_variant 0.24
fbiC 1304742 c.1812T>G synonymous_variant 0.21
fbiC 1304748 c.1818T>C synonymous_variant 0.21
fbiC 1304751 c.1821C>G synonymous_variant 0.21
fbiC 1304757 c.1827A>G synonymous_variant 0.2
fbiC 1304760 c.1830G>C synonymous_variant 0.2
fbiC 1304763 c.1833C>G synonymous_variant 0.21
fbiC 1304766 c.1836C>G synonymous_variant 0.21
fbiC 1304769 c.1839C>A synonymous_variant 0.21
fbiC 1304778 p.Asp616Glu missense_variant 0.21
fbiC 1304784 c.1854T>G synonymous_variant 0.21
fbiC 1304787 c.1857T>C synonymous_variant 0.22
fbiC 1304799 c.1869G>C synonymous_variant 0.23
fbiC 1304802 c.1872G>C synonymous_variant 0.22
fbiC 1304811 c.1881C>G synonymous_variant 0.2
fbiC 1304817 c.1887T>C synonymous_variant 0.2
fbiC 1304829 c.1899T>C synonymous_variant 0.21
fbiC 1304853 c.1923C>T synonymous_variant 0.2
fbiC 1304869 c.1939C>T synonymous_variant 0.2
fbiC 1304893 p.Gly655Ser missense_variant 0.21
fbiC 1304905 p.Ala659Ser missense_variant 0.2
fbiC 1304910 c.1980G>C synonymous_variant 0.21
fbiC 1304916 c.1986T>C synonymous_variant 0.21
fbiC 1304928 c.1998T>C synonymous_variant 0.18
fbiC 1304934 c.2004C>T synonymous_variant 0.17
fbiC 1304940 c.2010A>G synonymous_variant 0.18
fbiC 1304970 c.2040G>C synonymous_variant 0.17
fbiC 1304994 c.2064A>G synonymous_variant 0.19
fbiC 1304995 p.Leu689Met missense_variant 0.19
fbiC 1305001 p.Ile691Val missense_variant 0.2
fbiC 1305006 c.2076A>G synonymous_variant 0.19
fbiC 1305014 p.Thr695Ser missense_variant 0.2
fbiC 1305021 c.2091C>G synonymous_variant 0.19
fbiC 1305033 c.2103T>C synonymous_variant 0.17
fbiC 1305043 p.Ser705Thr missense_variant 0.15
Rv1258c 1406215 p.Leu376Met missense_variant 1.0
Rv1258c 1406685 p.Val219Ala missense_variant 1.0
embR 1416633 p.Leu239Val missense_variant 1.0
atpE 1461251 c.207G>T synonymous_variant 0.97
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472489 n.644A>G non_coding_transcript_exon_variant 0.19
rrs 1472969 n.1124A>G non_coding_transcript_exon_variant 0.17
rrs 1472978 n.1133T>C non_coding_transcript_exon_variant 0.18
rrs 1473105 n.1260G>A non_coding_transcript_exon_variant 0.16
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.16
rrl 1473899 n.242A>C non_coding_transcript_exon_variant 0.17
rrl 1473924 n.267_268insT non_coding_transcript_exon_variant 0.2
rrl 1473943 n.286G>C non_coding_transcript_exon_variant 0.24
rrl 1473945 n.288T>A non_coding_transcript_exon_variant 0.24
rrl 1473946 n.289A>T non_coding_transcript_exon_variant 0.25
rrl 1473986 n.329T>C non_coding_transcript_exon_variant 0.23
rrl 1473995 n.338G>T non_coding_transcript_exon_variant 0.25
rrl 1474001 n.344C>T non_coding_transcript_exon_variant 0.23
rrl 1474007 n.350A>G non_coding_transcript_exon_variant 0.23
rrl 1474012 n.355C>T non_coding_transcript_exon_variant 0.22
rrl 1474029 n.372G>A non_coding_transcript_exon_variant 0.24
rrl 1474056 n.399T>C non_coding_transcript_exon_variant 0.22
rrl 1474060 n.403G>A non_coding_transcript_exon_variant 0.21
rrl 1474099 n.442G>A non_coding_transcript_exon_variant 0.17
rrl 1474103 n.446A>T non_coding_transcript_exon_variant 0.18
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.17
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.15
rrl 1474447 n.790G>A non_coding_transcript_exon_variant 0.15
rrl 1474552 n.895C>T non_coding_transcript_exon_variant 0.17
rrl 1474627 n.970G>A non_coding_transcript_exon_variant 0.18
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.17
rrl 1474639 n.982G>A non_coding_transcript_exon_variant 0.17
rrl 1474717 n.1060A>T non_coding_transcript_exon_variant 0.18
rrl 1474794 n.1137C>A non_coding_transcript_exon_variant 0.19
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 0.21
rrl 1475573 n.1916G>A non_coding_transcript_exon_variant 0.16
rrl 1475637 n.1980T>A non_coding_transcript_exon_variant 0.15
rrl 1475883 n.2226A>G non_coding_transcript_exon_variant 0.17
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.18
rrl 1476033 n.2376T>C non_coding_transcript_exon_variant 0.18
rrl 1476035 n.2378G>A non_coding_transcript_exon_variant 0.18
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.17
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.16
rrl 1476580 n.2923G>A non_coding_transcript_exon_variant 0.18
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.19
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.18
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.17
inhA 1674406 p.Glu69Lys missense_variant 0.16
inhA 1674416 p.Ala72Asp missense_variant 0.16
inhA 1674428 p.Gly76Asp missense_variant 0.15
inhA 1674434 p.Val78Ala missense_variant 0.84
inhA 1674443 p.Ala81Glu missense_variant 0.17
inhA 1674450 c.249G>T synonymous_variant 0.18
inhA 1674452 p.Ala84Glu missense_variant 0.21
inhA 1674465 c.264C>G synonymous_variant 0.21
inhA 1674471 c.270G>C synonymous_variant 0.21
inhA 1674480 c.279T>C synonymous_variant 0.23
inhA 1674486 c.285T>C synonymous_variant 0.22
inhA 1674489 c.288G>C synonymous_variant 0.21
inhA 1674504 c.303C>G synonymous_variant 0.19
inhA 1674534 c.333G>A synonymous_variant 0.19
inhA 1674542 p.Ala114Glu missense_variant 0.16
inhA 1674546 c.345T>C synonymous_variant 0.17
inhA 1674639 c.438C>T synonymous_variant 0.18
inhA 1674655 c.454_456delAGCinsTCG synonymous_variant 0.19
inhA 1674660 c.459G>C synonymous_variant 0.19
inhA 1674690 c.489C>G synonymous_variant 0.25
inhA 1674703 c.502T>C synonymous_variant 0.22
inhA 1674714 c.513C>G synonymous_variant 0.22
inhA 1674718 c.517A>C synonymous_variant 0.22
inhA 1674741 c.540C>G synonymous_variant 0.22
inhA 1674742 p.Lys181Pro missense_variant 0.22
inhA 1674756 c.555T>G synonymous_variant 0.31
inhA 1674771 c.570C>G synonymous_variant 0.29
inhA 1674774 c.573A>C synonymous_variant 0.29
inhA 1674780 c.579T>G synonymous_variant 0.29
inhA 1674801 c.600T>C synonymous_variant 0.27
inhA 1674816 c.615T>C synonymous_variant 0.26
inhA 1674846 p.Ile215Met missense_variant 0.26
inhA 1674870 c.669T>C synonymous_variant 0.2
inhA 1674879 c.678T>G synonymous_variant 0.2
rpsA 1833541 c.-1T>C upstream_gene_variant 0.17
rpsA 1833554 p.Thr5Ala missense_variant 0.18
rpsA 1833595 c.54T>G synonymous_variant 0.21
rpsA 1833604 c.63C>T synonymous_variant 0.22
rpsA 1833679 c.138G>T synonymous_variant 0.26
rpsA 1833724 c.183C>G synonymous_variant 0.2
rpsA 1833727 c.186G>C synonymous_variant 0.2
rpsA 1833742 c.201A>G synonymous_variant 0.22
rpsA 1833745 c.204G>C synonymous_variant 0.22
rpsA 1833760 c.219C>T synonymous_variant 0.23
rpsA 1833787 c.246C>G synonymous_variant 0.22
rpsA 1833793 c.252C>T synonymous_variant 0.23
rpsA 1833796 c.255G>A synonymous_variant 0.23
rpsA 1833802 c.261A>G synonymous_variant 0.23
rpsA 1833811 c.270G>T synonymous_variant 0.24
rpsA 1833841 c.300C>G synonymous_variant 0.24
rpsA 1833847 c.306C>G synonymous_variant 0.25
rpsA 1833856 c.315A>G synonymous_variant 0.24
rpsA 1833874 c.333T>C synonymous_variant 0.22
rpsA 1833928 c.387G>C synonymous_variant 0.21
rpsA 1833949 c.408T>C synonymous_variant 0.21
rpsA 1833971 c.430C>T synonymous_variant 0.19
rpsA 1833979 c.438T>C synonymous_variant 0.2
rpsA 1833988 c.447C>G synonymous_variant 0.2
rpsA 1833991 c.450C>G synonymous_variant 0.2
rpsA 1833997 c.456G>C synonymous_variant 0.19
rpsA 1834000 c.459G>C synonymous_variant 0.19
rpsA 1834009 c.468C>G synonymous_variant 0.19
rpsA 1834012 c.471G>C synonymous_variant 0.19
rpsA 1834015 c.474G>C synonymous_variant 0.21
rpsA 1834030 c.489C>G synonymous_variant 0.17
rpsA 1834210 c.669C>T synonymous_variant 0.16
rpsA 1834222 c.681T>C synonymous_variant 0.17
rpsA 1834240 c.699T>C synonymous_variant 0.16
rpsA 1834252 c.711C>G synonymous_variant 0.18
rpsA 1834261 c.720A>G synonymous_variant 0.18
rpsA 1834264 c.723G>C synonymous_variant 0.18
rpsA 1834297 c.756C>G synonymous_variant 0.19
rpsA 1834303 c.762T>C synonymous_variant 0.2
rpsA 1834306 c.765T>C synonymous_variant 0.2
rpsA 1834348 c.807T>C synonymous_variant 0.22
rpsA 1834366 c.825A>G synonymous_variant 0.23
rpsA 1834378 c.837T>C synonymous_variant 0.24
rpsA 1834390 c.849G>C synonymous_variant 0.24
rpsA 1834396 c.855G>C synonymous_variant 0.24
rpsA 1834411 c.870T>G synonymous_variant 0.25
rpsA 1834417 c.876G>C synonymous_variant 0.25
rpsA 1834423 c.882G>C synonymous_variant 0.24
rpsA 1834435 c.894G>C synonymous_variant 0.23
rpsA 1834451 c.910T>C synonymous_variant 0.24
rpsA 1834465 c.924T>C synonymous_variant 0.25
rpsA 1834468 c.927A>C synonymous_variant 0.25
rpsA 1834474 c.933C>G synonymous_variant 0.25
rpsA 1834489 c.948T>C synonymous_variant 0.28
rpsA 1834528 c.987T>G synonymous_variant 0.29
rpsA 1834546 c.1005T>C synonymous_variant 0.28
rpsA 1834555 c.1014T>C synonymous_variant 0.26
rpsA 1834558 c.1017C>G synonymous_variant 0.27
rpsA 1834609 c.1068T>C synonymous_variant 0.22
rpsA 1834612 c.1071G>A synonymous_variant 0.21
rpsA 1834633 c.1092A>G synonymous_variant 0.19
rpsA 1834639 c.1098T>C synonymous_variant 0.18
rpsA 1834657 c.1116G>A synonymous_variant 0.2
rpsA 1834690 c.1149T>C synonymous_variant 0.2
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2154724 p.Arg463Leu missense_variant 1.0
katG 2155503 c.609C>T synonymous_variant 1.0
PPE35 2167926 p.Leu896Ser missense_variant 1.0
Rv1979c 2222308 p.Asp286Gly missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2518132 c.18C>T synonymous_variant 1.0
kasA 2518146 p.Phe11Tyr missense_variant 0.17
kasA 2518162 c.48G>A synonymous_variant 0.21
kasA 2518174 c.60A>G synonymous_variant 0.18
kasA 2518183 c.69G>A synonymous_variant 0.19
kasA 2518186 c.72G>C synonymous_variant 0.18
kasA 2518189 c.75C>T synonymous_variant 0.18
kasA 2518190 p.Ser26Ala missense_variant 0.19
kasA 2518223 c.109T>C synonymous_variant 0.18
kasA 2518248 p.Ala45Val missense_variant 0.21
kasA 2518255 c.141A>G synonymous_variant 0.21
kasA 2518279 c.165T>C synonymous_variant 0.23
kasA 2518282 c.168A>G synonymous_variant 0.23
kasA 2518283 p.Ala57Pro missense_variant 0.23
kasA 2518297 c.183C>T synonymous_variant 0.25
kasA 2518300 c.186T>G synonymous_variant 0.25
kasA 2518312 p.Asp66Glu missense_variant 0.24
kasA 2518315 c.201G>C synonymous_variant 0.24
kasA 2518321 c.207C>T synonymous_variant 0.23
kasA 2518323 p.Ser70Asn missense_variant 0.23
kasA 2518334 c.220_222delCGAinsAGG synonymous_variant 0.22
kasA 2518343 p.Met77Leu missense_variant 0.24
kasA 2518348 c.234A>C synonymous_variant 0.23
kasA 2518357 c.243G>C synonymous_variant 0.24
kasA 2518379 c.265T>C synonymous_variant 0.22
kasA 2518385 p.Gly91Ser missense_variant 0.19
kasA 2518390 c.276A>T synonymous_variant 0.19
kasA 2518396 c.282A>C synonymous_variant 0.17
kasA 2518403 p.Ser97Asn missense_variant 0.18
kasA 2518417 c.303G>C synonymous_variant 0.17
kasA 2518420 p.Glu102Asp missense_variant 0.17
kasA 2518426 c.312T>C synonymous_variant 0.17
kasA 2518439 p.Ala109Ser missense_variant 0.17
kasA 2518444 c.330T>C synonymous_variant 0.18
kasA 2518447 c.333T>G synonymous_variant 0.18
kasA 2518459 c.345T>G synonymous_variant 0.18
kasA 2518462 c.348A>G synonymous_variant 0.17
kasA 2518468 c.354A>C synonymous_variant 0.18
kasA 2518475 c.361A>C synonymous_variant 0.17
kasA 2518480 c.366T>C synonymous_variant 0.18
kasA 2518492 c.378C>T synonymous_variant 0.16
kasA 2518597 c.483C>G synonymous_variant 0.17
kasA 2518618 c.504G>A synonymous_variant 0.15
kasA 2518636 c.522C>T synonymous_variant 0.16
kasA 2518645 c.531G>A synonymous_variant 0.18
kasA 2518732 c.618C>G synonymous_variant 0.17
kasA 2518747 c.633C>G synonymous_variant 0.18
kasA 2518783 c.669T>G synonymous_variant 0.17
kasA 2518786 c.672G>A synonymous_variant 0.17
kasA 2518789 c.675G>T synonymous_variant 0.17
kasA 2518798 c.684G>T synonymous_variant 0.18
kasA 2518825 c.711T>C synonymous_variant 0.18
folC 2746948 c.651G>A synonymous_variant 0.17
folC 2746966 c.633G>C synonymous_variant 0.17
folC 2746975 c.624T>C synonymous_variant 0.17
folC 2746979 p.Ala207Gly missense_variant 0.17
folC 2746981 c.618T>C synonymous_variant 0.17
folC 2746987 c.612T>C synonymous_variant 0.18
folC 2746990 p.Asp203Glu missense_variant 0.17
pepQ 2859704 c.715T>C synonymous_variant 0.19
pepQ 2859723 c.696T>C synonymous_variant 0.16
pepQ 2859765 c.654G>C synonymous_variant 0.18
pepQ 2859778 p.Val214Asp missense_variant 0.17
pepQ 2859781 p.Gln213Pro missense_variant 0.16
pepQ 2859801 c.618G>C synonymous_variant 0.17
pepQ 2859816 c.603G>C synonymous_variant 0.17
pepQ 2859825 p.Ala198Pro missense_variant 0.17
pepQ 2859834 c.585T>C synonymous_variant 0.18
pepQ 2859857 p.Val188Met missense_variant 0.17
pepQ 2859864 c.555T>G synonymous_variant 0.18
pepQ 2859870 c.549T>C synonymous_variant 0.18
pepQ 2859873 c.546T>C synonymous_variant 0.18
thyX 3067318 c.628C>A synonymous_variant 0.19
thyX 3067322 c.624C>T synonymous_variant 0.2
thyX 3067349 c.597G>C synonymous_variant 0.18
thyX 3067355 c.591A>C synonymous_variant 0.2
thyX 3067373 c.573C>G synonymous_variant 0.18
thyX 3067376 c.570G>C synonymous_variant 0.18
thyX 3067394 c.552G>C synonymous_variant 0.19
thyX 3067406 c.540A>G synonymous_variant 0.2
thyX 3067430 c.516C>G synonymous_variant 0.21
thyX 3067439 c.507A>G synonymous_variant 0.21
thyX 3067445 c.501C>G synonymous_variant 0.21
thyX 3067457 c.489C>G synonymous_variant 0.2
thyX 3067463 c.483C>T synonymous_variant 0.19
thyX 3067466 c.480G>C synonymous_variant 0.18
thyX 3067470 p.Asn159Ser missense_variant 0.19
thyX 3067475 c.471A>G synonymous_variant 0.2
thyX 3067490 c.456C>G synonymous_variant 0.19
thyX 3067515 p.Ser144Ala missense_variant 0.19
thyX 3067531 p.Ala139Thr missense_variant 0.16
thyX 3067560 p.Arg129His missense_variant 0.15
thyX 3067570 p.Ala126Pro missense_variant 0.17
thyX 3067577 p.Glu123Asp missense_variant 0.19
thyX 3067592 c.354G>C synonymous_variant 0.17
thyX 3067610 p.Lys112Ser missense_variant 0.18
thyX 3067619 c.327A>G synonymous_variant 0.17
thyX 3067622 c.324C>T synonymous_variant 0.16
thyX 3067634 c.312C>G synonymous_variant 0.16
thyX 3067661 c.285C>G synonymous_variant 0.18
thyX 3067721 c.225T>C synonymous_variant 0.18
thyX 3067727 c.219A>C synonymous_variant 0.17
thyX 3067736 c.210C>T synonymous_variant 0.19
thyX 3067739 c.207T>C synonymous_variant 0.19
thyX 3067742 c.204A>G synonymous_variant 0.17
thyX 3067762 p.Arg62Gly missense_variant 0.21
thyX 3067765 p.Leu61Ile missense_variant 0.21
thyX 3067781 c.165C>G synonymous_variant 0.21
thyX 3067784 c.162C>G synonymous_variant 0.18
thyX 3067793 c.153T>C synonymous_variant 0.2
thyX 3067802 c.144C>G synonymous_variant 0.21
thyX 3067839 p.Val36Thr missense_variant 0.18
thyX 3067841 c.105G>C synonymous_variant 0.18
thyX 3067850 c.96A>C synonymous_variant 0.17
ald 3086728 c.-92C>T upstream_gene_variant 1.0
ald 3086788 c.-32T>C upstream_gene_variant 1.0
ald 3087084 c.266delA frameshift_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
fprA 3475159 p.Asn385Asp missense_variant 1.0
fprA 3475269 c.1263C>T synonymous_variant 1.0
Rv3236c 3612143 p.Arg325His missense_variant 1.0
rpoA 3877679 p.Ala277Thr missense_variant 0.16
rpoA 3877704 c.804G>T synonymous_variant 0.18
rpoA 3877728 c.780C>T synonymous_variant 0.21
rpoA 3877737 c.771G>C synonymous_variant 0.22
rpoA 3877743 c.765T>C synonymous_variant 0.23
rpoA 3877764 c.744C>G synonymous_variant 0.19
rpoA 3877770 c.738A>G synonymous_variant 0.19
rpoA 3877776 c.732T>C synonymous_variant 0.19
rpoA 3877782 c.726T>C synonymous_variant 0.18
rpoA 3877857 c.651G>A synonymous_variant 0.17
rpoA 3877875 c.633T>C synonymous_variant 0.17
rpoA 3877900 p.Ser203Thr missense_variant 0.18
rpoA 3877905 c.603A>G synonymous_variant 0.18
rpoA 3877908 c.600T>C synonymous_variant 0.18
rpoA 3877920 c.588G>C synonymous_variant 0.21
rpoA 3877962 c.546G>T synonymous_variant 0.18
rpoA 3877965 c.543C>G synonymous_variant 0.17
rpoA 3877968 c.540C>G synonymous_variant 0.17
rpoA 3877986 c.522G>C synonymous_variant 0.19
rpoA 3877989 c.519A>G synonymous_variant 0.19
rpoA 3878001 c.507A>G synonymous_variant 0.2
rpoA 3878019 c.489A>G synonymous_variant 0.22
rpoA 3878022 c.486T>C synonymous_variant 0.24
rpoA 3878028 c.480G>C synonymous_variant 0.24
rpoA 3878031 c.477T>C synonymous_variant 0.25
rpoA 3878040 c.468T>C synonymous_variant 0.26
rpoA 3878046 c.462T>G synonymous_variant 0.25
rpoA 3878052 c.456C>T synonymous_variant 0.28
rpoA 3878055 c.453A>G synonymous_variant 0.28
rpoA 3878061 c.447G>C synonymous_variant 0.28
rpoA 3878070 c.438T>C synonymous_variant 0.28
rpoA 3878103 c.405A>G synonymous_variant 0.27
rpoA 3878106 c.402G>C synonymous_variant 0.28
rpoA 3878118 c.390T>C synonymous_variant 0.28
rpoA 3878127 c.381G>C synonymous_variant 0.29
rpoA 3878130 c.378C>G synonymous_variant 0.3
rpoA 3878143 p.Gly122Ala missense_variant 0.3
rpoA 3878160 c.348C>G synonymous_variant 0.3
rpoA 3878169 c.339G>C synonymous_variant 0.3
rpoA 3878184 c.324C>T synonymous_variant 0.32
rpoA 3878187 c.321C>G synonymous_variant 0.32
rpoA 3878193 c.315T>C synonymous_variant 0.31
rpoA 3878199 c.309T>C synonymous_variant 0.31
rpoA 3878205 c.303T>C synonymous_variant 0.32
rpoA 3878217 c.291A>G synonymous_variant 0.32
rpoA 3878247 c.261G>C synonymous_variant 0.3
rpoA 3878256 c.252G>C synonymous_variant 0.29
rpoA 3878264 p.Ser82Gly missense_variant 0.32
rpoA 3878271 c.237T>C synonymous_variant 0.32
rpoA 3878283 p.Glu75Asp missense_variant 0.32
rpoA 3878292 c.216T>C synonymous_variant 0.32
rpoA 3878298 c.210A>G synonymous_variant 0.33
rpoA 3878304 c.204G>C synonymous_variant 0.31
rpoA 3878307 c.201C>G synonymous_variant 0.31
rpoA 3878313 c.195G>C synonymous_variant 0.31
rpoA 3878322 c.186A>G synonymous_variant 0.31
rpoA 3878331 c.177A>G synonymous_variant 0.28
rpoA 3878334 c.174T>C synonymous_variant 0.29
rpoA 3878337 c.171T>C synonymous_variant 0.29
rpoA 3878346 c.162T>C synonymous_variant 0.33
rpoA 3878364 c.144A>C synonymous_variant 0.33
rpoA 3878385 c.123C>G synonymous_variant 0.33
rpoA 3878391 c.117T>G synonymous_variant 0.34
rpoA 3878415 c.93C>T synonymous_variant 0.35
rpoA 3878424 c.84G>C synonymous_variant 0.33
rpoA 3878436 c.72A>G synonymous_variant 0.32
rpoA 3878442 c.66G>C synonymous_variant 0.33
rpoA 3878454 c.54A>G synonymous_variant 0.33
rpoA 3878458 p.Asn17Thr missense_variant 0.32
rpoA 3878468 p.Leu14Val missense_variant 0.26
rpoA 3878472 p.Asp12Glu missense_variant 0.25
rpoA 3878490 c.18C>A synonymous_variant 0.23
rpoA 3878701 c.-194C>G upstream_gene_variant 0.17
ddn 3986762 c.-82G>A upstream_gene_variant 1.0
clpC1 4038842 c.1863G>C synonymous_variant 0.17
clpC1 4038878 c.1827A>G synonymous_variant 0.17
clpC1 4038908 c.1797C>G synonymous_variant 0.2
clpC1 4038923 c.1780_1782delCTAinsTTG synonymous_variant 0.2
clpC1 4038953 c.1752A>G synonymous_variant 0.19
clpC1 4038956 c.1749T>C synonymous_variant 0.19
clpC1 4038965 c.1740T>C synonymous_variant 0.22
clpC1 4038974 c.1731T>C synonymous_variant 0.21
clpC1 4038989 c.1716T>C synonymous_variant 0.21
clpC1 4038992 c.1713C>T synonymous_variant 0.2
clpC1 4038997 c.1708T>C synonymous_variant 0.19
clpC1 4039022 c.1683A>G synonymous_variant 0.2
clpC1 4039046 c.1659C>G synonymous_variant 0.18
clpC1 4039274 c.1431G>C synonymous_variant 0.19
clpC1 4039283 c.1422C>T synonymous_variant 0.19
clpC1 4039286 c.1419T>C synonymous_variant 0.19
clpC1 4039295 c.1410A>G synonymous_variant 0.2
clpC1 4039304 c.1401G>A synonymous_variant 0.19
clpC1 4039319 c.1386T>C synonymous_variant 0.2
clpC1 4039328 c.1377A>C synonymous_variant 0.22
clpC1 4039331 c.1374C>G synonymous_variant 0.22
clpC1 4039338 p.Thr456Gln missense_variant 0.23
clpC1 4039343 c.1362G>A synonymous_variant 0.24
clpC1 4039364 c.1341C>G synonymous_variant 0.26
clpC1 4039370 c.1335G>A synonymous_variant 0.25
clpC1 4039391 c.1314T>G synonymous_variant 0.23
clpC1 4039403 c.1302G>A synonymous_variant 0.21
clpC1 4039406 c.1299G>C synonymous_variant 0.21
clpC1 4039409 c.1296T>C synonymous_variant 0.21
clpC1 4039412 c.1293T>G synonymous_variant 0.22
clpC1 4039430 c.1275T>C synonymous_variant 0.2
clpC1 4039442 c.1263A>G synonymous_variant 0.17
clpC1 4039454 c.1251A>G synonymous_variant 0.17
clpC1 4039466 c.1239T>C synonymous_variant 0.16
clpC1 4039469 c.1236T>C synonymous_variant 0.17
clpC1 4039517 c.1188C>G synonymous_variant 0.19
clpC1 4039694 c.1011G>C synonymous_variant 0.18
clpC1 4039724 c.981A>G synonymous_variant 0.18
clpC1 4039789 p.Ser306Thr missense_variant 0.16
clpC1 4039817 c.888A>T synonymous_variant 0.17
clpC1 4039931 c.774T>C synonymous_variant 0.17
clpC1 4039946 c.759A>T synonymous_variant 0.19
clpC1 4039952 c.753T>C synonymous_variant 0.18
clpC1 4039955 c.750G>C synonymous_variant 0.19
clpC1 4039958 c.747G>C synonymous_variant 0.2
clpC1 4039979 c.726C>G synonymous_variant 0.18
clpC1 4039988 c.717C>G synonymous_variant 0.19
clpC1 4039991 c.714G>C synonymous_variant 0.18
clpC1 4039996 p.Glu237Gln missense_variant 0.18
clpC1 4040021 c.684A>C synonymous_variant 0.21
clpC1 4040024 c.681A>G synonymous_variant 0.19
clpC1 4040033 c.672G>C synonymous_variant 0.21
clpC1 4040048 c.657C>T synonymous_variant 0.22
clpC1 4040090 c.613_615delTCTinsAGC synonymous_variant 0.23
clpC1 4040093 c.612C>G synonymous_variant 0.24
clpC1 4040147 c.558A>G synonymous_variant 0.24
clpC1 4040153 c.552A>G synonymous_variant 0.24
clpC1 4040162 c.543G>C synonymous_variant 0.24
clpC1 4040165 c.540G>C synonymous_variant 0.24
clpC1 4040171 c.534C>G synonymous_variant 0.24
clpC1 4040180 c.525C>T synonymous_variant 0.25
clpC1 4040200 c.505T>C synonymous_variant 0.23
clpC1 4040201 c.504C>G synonymous_variant 0.22
clpC1 4040207 c.498T>C synonymous_variant 0.2
clpC1 4040213 c.490_492delTCTinsAGC synonymous_variant 0.21
clpC1 4040225 c.480A>C synonymous_variant 0.21
clpC1 4040228 c.477G>C synonymous_variant 0.21
clpC1 4040249 c.456A>G synonymous_variant 0.2
clpC1 4040252 c.453C>G synonymous_variant 0.19
clpC1 4040258 c.447G>A synonymous_variant 0.19
clpC1 4040324 c.381G>C synonymous_variant 0.19
embC 4240671 p.Thr270Ile missense_variant 1.0
embC 4240897 c.1035C>A synonymous_variant 0.15
embC 4240954 p.Ile364Met missense_variant 0.17
embC 4240960 c.1098G>C synonymous_variant 0.18
embC 4240966 c.1104G>T synonymous_variant 0.18
embC 4240975 c.1113C>G synonymous_variant 0.18
embC 4240981 c.1119G>C synonymous_variant 0.18
embC 4240983 p.Ser374Asn missense_variant 0.18
embC 4240990 c.1128A>G synonymous_variant 0.18
embC 4241005 c.1143G>C synonymous_variant 0.18
embC 4241008 c.1146G>C synonymous_variant 0.18
embC 4241011 c.1149C>A synonymous_variant 0.18
embC 4241017 c.1155T>C synonymous_variant 0.18
embC 4241023 c.1161T>G synonymous_variant 0.19
embC 4241024 p.Val388Thr missense_variant 0.19
embC 4241030 c.1168C>T synonymous_variant 0.18
embC 4241047 c.1185C>G synonymous_variant 0.19
embC 4241053 c.1191G>C synonymous_variant 0.19
embC 4241059 c.1197G>A synonymous_variant 0.2
embC 4241086 c.1224G>C synonymous_variant 0.16
embC 4241665 c.1803G>C synonymous_variant 0.2
embC 4241671 c.1809T>C synonymous_variant 0.19
embC 4241683 c.1821G>C synonymous_variant 0.18
embC 4241843 p.Leu661Ile missense_variant 1.0
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4244220 c.988C>T synonymous_variant 0.93
embA 4244379 p.Pro383Ser missense_variant 0.92
embA 4244802 p.Leu524Met missense_variant 0.2
embA 4244805 p.Leu525Met missense_variant 0.2
embA 4244808 p.Phe526Leu missense_variant 0.2
embA 4244823 p.Val531Met missense_variant 0.24
embA 4244829 p.Phe533Val missense_variant 0.29
embA 4244850 p.Arg540Gly missense_variant 0.3
embA 4244856 p.Ala542Pro missense_variant 0.29
embA 4244879 c.1647C>G synonymous_variant 0.27
embA 4244885 c.1653A>G synonymous_variant 0.27
embA 4244886 c.1654C>T synonymous_variant 0.24
embA 4244897 c.1665T>C synonymous_variant 0.2
embA 4244900 c.1668G>C synonymous_variant 0.2
embA 4244903 c.1671G>C synonymous_variant 0.2
embA 4244905 p.Val558Gly missense_variant 0.2
embA 4244909 c.1677C>A synonymous_variant 0.18
embA 4244919 c.1687_1689delCTCinsTTG synonymous_variant 0.18
embA 4245509 c.2277A>G synonymous_variant 0.18
embA 4245512 c.2280G>C synonymous_variant 0.18
embB 4245518 c.-996A>G upstream_gene_variant 0.17
embB 4245560 c.-954C>G upstream_gene_variant 0.17
embA 4245567 p.Glu779Leu missense_variant 0.17
embA 4245594 p.Ser788Thr missense_variant 0.15
embB 4245626 c.-888G>C upstream_gene_variant 0.17
embB 4245653 c.-861C>T upstream_gene_variant 0.16
embB 4245671 c.-843C>A upstream_gene_variant 0.15
embB 4246864 c.351C>T synonymous_variant 1.0
embB 4247646 p.Glu378Ala missense_variant 1.0
aftB 4269351 c.-515C>T upstream_gene_variant 0.95
ubiA 4269387 p.Glu149Asp missense_variant 1.0
aftB 4269522 c.-686C>T upstream_gene_variant 1.0
aftB 4269606 c.-770T>C upstream_gene_variant 1.0
ethA 4326208 c.1266G>T synonymous_variant 0.15
ethA 4326220 c.1254C>A synonymous_variant 0.15
ethA 4326465 p.Ile337Val missense_variant 0.93
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
whiB6 4338602 c.-81A>C upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0
gid 4408034 p.Glu57Lys missense_variant 1.0