SRR1184381
|
MDR-TB
|
|
None
|
SRR28351339
|
MDR-TB
|
lineage4
|
None
|
SRR8552928
|
HR-TB
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR4814352
|
Other
|
lineage2.2.1
|
None
|
SRR10808730
|
Other
|
lineage4.9
|
None
|
ERR4819422
|
HR-TB
|
lineage4.9
|
None
|
ERR4819781
|
Other
|
lineage2.2.1
|
None
|
ERR736835
|
HR-TB
|
La1.7;M.canetti;lineage4.9
|
None
|
SRR1184372
|
MDR-TB
|
|
None
|
ERR9786604
|
Other
|
|
None
|
SRR1165667
|
Other
|
lineage4.9;lineage6.3
|
None
|
SRR1167384
|
Other
|
La3;lineage4.9
|
None
|
SRR28351554
|
Sensitive
|
La1.6;lineage4
|
None
|
SRR6045380
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR5311097
|
Sensitive
|
lineage4.2;lineage4.6.3;lineage4.9
|
None
|
SRR6045503
|
Sensitive
|
lineage4.9
|
None
|
SRR1196566
|
Other
|
lineage4.9
|
None
|
SRR3675465
|
Other
|
lineage4.9;lineage6.3
|
None
|
ERR363500
|
Sensitive
|
lineage4.9
|
None
|
SRR6045010
|
Sensitive
|
lineage4.9
|
None
|
ERR3283036
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR926155
|
Sensitive
|
lineage4.9
|
None
|
ERR4819241
|
Other
|
lineage4.9
|
None
|
ERR4828872
|
Sensitive
|
lineage4.2;lineage4.9
|
None
|
SRR1172951
|
Other
|
lineage4.9
|
None
|
SRR1196768
|
MDR-TB
|
|
None
|
ERR181744
|
HR-TB
|
La3;lineage4.9
|
None
|
ERR4818929
|
HR-TB
|
lineage4.9
|
None
|
ERR369162
|
Other
|
lineage4.9
|
None
|
SRR3675508
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR29016780
|
Other
|
lineage4.9
|
None
|
SRR6046540
|
Other
|
lineage2.1;lineage4.9
|
None
|
SRR3675385
|
Other
|
La1.7;lineage4.9
|
None
|
SRR18213713
|
HR-TB
|
|
None
|
ERR3283026
|
HR-TB
|
lineage4.2;lineage4.6.3;lineage4.9.1
|
None
|
SRR20969677
|
HR-TB
|
La3;lineage2
|
None
|
SRR29055629
|
MDR-TB
|
La3;lineage2.2.1
|
None
|
ERR369158
|
Other
|
lineage4.9
|
None
|
ERR736874
|
Other
|
La3;lineage2.1;lineage4.9
|
None
|
SRR1173629
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR4811022
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR1184298
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1173355
|
Other
|
lineage4.9
|
None
|
ERR9786682
|
Other
|
lineage4.1.2.1
|
None
|
ERR4188247
|
HR-TB
|
lineage4.9
|
None
|
SRR1169194
|
Other
|
lineage4.9
|
None
|
ERR4820773
|
HR-TB
|
lineage4.9
|
None
|
ERR3797028
|
HR-TB
|
M.canetti;lineage4.9
|
None
|
ERR702405
|
Sensitive
|
lineage4.9
|
None
|
ERR926162
|
Sensitive
|
lineage4.9
|
None
|
ERR736863
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR363490
|
Sensitive
|
lineage4.9
|
None
|
SRR17658565
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR14801759
|
HR-TB
|
La1.7;lineage4.9
|
None
|
ERR363421
|
Sensitive
|
lineage4.9
|
None
|
SRR3675467
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR6045526
|
Other
|
lineage4.9
|
None
|
ERR3283014
|
Sensitive
|
La3;lineage4.9
|
None
|
ERR3283031
|
Sensitive
|
La3;lineage4.9
|
None
|
SRR3675216
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR373945
|
Sensitive
|
lineage4.9
|
None
|
SRR28119811
|
Other
|
lineage2.2.1;lineage6.3
|
None
|
SRR21733183
|
RR-TB
|
lineage1.1.2
|
None
|
ERR4816999
|
Other
|
|
None
|
ERR4819051
|
Sensitive
|
lineage4.9
|
None
|
ERR926158
|
Sensitive
|
lineage4.9
|
None
|
ERR3445503
|
Other
|
La1.7.1;La1.7.X-unk4
|
None
|
ERR3283011
|
Other
|
La3;lineage4.9
|
None
|
SRR1196474
|
Other
|
lineage3.1.1
|
None
|
SRR1196546
|
Other
|
lineage4.9
|
None
|
SRR6045327
|
Other
|
lineage2.1;lineage4.3.2;lineage4.9
|
None
|
ERR4820854
|
Other
|
lineage4.1.2.1
|
None
|
ERR4815441
|
HR-TB
|
lineage4.9
|
None
|
ERR1063862
|
HR-TB
|
lineage4.9
|
None
|
ERR176793
|
Other
|
lineage4.1.1.1
|
None
|
ERR176779
|
HR-TB
|
lineage4.9
|
None
|
ERR4811311
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR7535086
|
Other
|
|
None
|
ERR3804169
|
HR-TB
|
lineage4.1.3
|
None
|
ERR4816466
|
HR-TB
|
lineage4.9
|
None
|
ERR971389
|
Sensitive
|
lineage4.9
|
None
|
ERR9786711
|
Sensitive
|
lineage4.6.2.2
|
None
|
SRR12416842
|
HR-TB
|
lineage4.9
|
None
|
ERR702406
|
Other
|
lineage2.1
|
None
|
ERR4816656
|
Other
|
lineage4.9
|
None
|
ERR9786611
|
HR-TB
|
lineage4.1.3
|
None
|
ERR5336148
|
Other
|
lineage2.1;lineage6.3
|
None
|
SRR1173400
|
Other
|
lineage4.9
|
None
|
ERR736867
|
Other
|
lineage2.1;lineage4.9
|
None
|
SRR26937071
|
MDR-TB
|
La3;lineage2.2.1
|
None
|
ERR11465353
|
Sensitive
|
lineage4.3.4.1
|
None
|
SRR5341302
|
Other
|
La3;lineage2.1;lineage4.9
|
None
|
ERR502532
|
Other
|
M.canetti;lineage2.1;lineage6.3
|
None
|
ERR5311094
|
HR-TB
|
lineage4.9
|
None
|
SRR5341315
|
Other
|
La1.7;lineage3;lineage4.9;lineage7
|
None
|
SRR5341422
|
HR-TB
|
La1.7;lineage4.9;lineage7
|
None
|
SRR1184294
|
Other
|
lineage4.9
|
None
|
ERR4818110
|
Sensitive
|
lineage4.9
|
None
|
ERR3804155
|
Other
|
lineage4.1.2.1
|
None
|
ERR3797070
|
Other
|
lineage4.9
|
None
|
SRR3675221
|
Other
|
lineage4.9
|
None
|
ERR2514692
|
Other
|
|
None
|
ERR212033
|
Other
|
lineage4.9
|
None
|
SRR28119805
|
Other
|
lineage4.9
|
None
|
ERR4817060
|
Other
|
|
None
|
ERR234659
|
Other
|
|
None
|
ERR181824
|
HR-TB
|
lineage4.9
|
None
|
ERR349264
|
Sensitive
|
lineage4.9
|
None
|
ERR9786601
|
Other
|
lineage4.1.2.1
|
None
|
SRR12142341
|
HR-TB
|
lineage2.1
|
None
|
ERR176549
|
Other
|
lineage4.3.4.2.1
|
None
|
ERR176778
|
HR-TB
|
lineage4.9
|
None
|
ERR363446
|
Sensitive
|
lineage4.9
|
None
|
ERR3801503
|
Sensitive
|
lineage4.6.2.2
|
None
|
ERR736875
|
HR-TB
|
lineage4.9
|
None
|
SRR1173633
|
Other
|
lineage4.9
|
None
|
ERR9786440
|
Other
|
lineage4.1
|
None
|
SRR3675572
|
Other
|
|
None
|
SRR3675510
|
Sensitive
|
La3;lineage4.9
|
None
|
ERR4818347
|
Other
|
lineage4.1.2
|
None
|
SRR3675505
|
Other
|
La1.7;M.canetti;lineage4.9
|
None
|
ERR4407463
|
HR-TB
|
|
None
|
ERR926157
|
Sensitive
|
lineage4.9
|
None
|
ERR4818021
|
Other
|
La1.2.BCG;La1.8.1
|
None
|
ERR4810741
|
HR-TB
|
La3;lineage2.1;lineage6.3
|
None
|
ERR11252736
|
Other
|
lineage4.9
|
None
|
ERR6358755
|
Other
|
lineage4.6.1.1
|
None
|
SRR3742665
|
HR-TB
|
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3
|
None
|
ERR4817893
|
Other
|
La3;lineage4.8
|
None
|
SRR28119717
|
Other
|
lineage4.9;lineage6.3
|
None
|
ERR736817
|
HR-TB
|
lineage4.3.4
|
None
|
ERR3283019
|
Other
|
lineage2.1;lineage4.9
|
None
|
SRR3742657
|
Pre-XDR-TB
|
La3;M.canetti;lineage2.2.1
|
None
|
SRR3675214
|
Other
|
lineage4.9
|
None
|
ERR4817735
|
Other
|
lineage4.8
|
None
|
SRR19303884
|
Other
|
lineage2.1;lineage6.3
|
None
|
SRR3675501
|
Other
|
La1.7;lineage4.9
|
None
|
SRR5341432
|
Sensitive
|
La1.7;lineage4.9;lineage7
|
None
|
ERR4811142
|
RR-TB
|
La3;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR3675492
|
Other
|
La1.7;lineage4.9
|
None
|
SRR1165628
|
Other
|
La3;lineage4.9
|
None
|
ERR349300
|
Sensitive
|
lineage4.9
|
None
|
ERR4830353
|
Other
|
La1.7
|
None
|
SRR1184312
|
Other
|
lineage2.2.1
|
None
|
ERR1035138
|
MDR-TB
|
lineage2.1;lineage4.9
|
None
|
ERR4811105
|
HR-TB
|
La3;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR15368973
|
Other
|
lineage4.9
|
None
|
ERR4815604
|
Other
|
|
None
|
ERR1035157
|
Other
|
lineage4.9
|
None
|
ERR181887
|
Other
|
lineage4.9
|
None
|
SRR10809074
|
Sensitive
|
lineage4.9
|
None
|
ERR3283030
|
HR-TB
|
lineage4.9
|
None
|
SRR1169306
|
Other
|
La3;lineage4.9
|
None
|
SRR29016901
|
Other
|
La3;lineage4.9
|
None
|
SRR13423649
|
Sensitive
|
lineage2.2.1
|
None
|
SRR6046897
|
Sensitive
|
lineage4.9
|
None
|
ERR405219
|
HR-TB
|
La1.7;lineage3.1;lineage4
|
None
|
ERR363474
|
Sensitive
|
lineage4.9
|
None
|
ERR124636
|
Sensitive
|
lineage4.9
|
None
|
ERR349299
|
Other
|
lineage4.9
|
None
|
SRR9970981
|
RR-TB
|
lineage4.3.2.1
|
None
|
ERR3797043
|
Sensitive
|
lineage4.9
|
None
|
SRR6458423
|
HR-TB
|
lineage2.2.1
|
None
|
SRR3675236
|
Other
|
|
None
|
SRR3675524
|
Other
|
lineage4.9;lineage6.3
|
None
|
ERR926163
|
Other
|
lineage4.9
|
None
|
ERR3283044
|
Other
|
lineage4
|
None
|
ERR1063859
|
HR-TB
|
La1.7.1;lineage4.9
|
None
|
ERR363499
|
Sensitive
|
lineage4.9
|
None
|
SRR1165699
|
Other
|
lineage4.9
|
None
|
ERR108471
|
HR-TB
|
lineage4.9
|
None
|
ERR4819877
|
HR-TB
|
lineage4.9
|
None
|
ERR245794
|
HR-TB
|
lineage4.3.4.2.1
|
None
|
ERR4800341
|
Other
|
lineage3
|
None
|
ERR4816478
|
HR-TB
|
lineage4
|
None
|
SRR1172728
|
RR-TB
|
La3
|
None
|
SRR28119777
|
Other
|
lineage4.9
|
None
|
ERR176643
|
Other
|
La3;lineage4.9
|
None
|
ERR363445
|
Other
|
lineage4.9
|
None
|
ERR363502
|
Other
|
lineage4.9
|
None
|
ERR9117709
|
Other
|
|
None
|
ERR323056
|
HR-TB
|
lineage4.4.1.2
|
None
|
ERR4797193
|
HR-TB
|
lineage1.1.2
|
None
|
SRR1172234
|
Other
|
lineage4.9
|
None
|
SRR5341308
|
Sensitive
|
lineage4.9
|
None
|
ERR13265748
|
Other
|
lineage4.9;lineage6.3
|
None
|
ERR1034634
|
HR-TB
|
lineage4.9
|
None
|
SRR3675488
|
Other
|
La1.7;lineage4.9
|
None
|
ERR4797054
|
Pre-XDR-TB
|
lineage2.1
|
None
|
ERR1334034
|
Other
|
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3
|
None
|
ERR4798493
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1184346
|
HR-TB
|
lineage3.1
|
None
|
ERR349266
|
Sensitive
|
lineage4.9
|
None
|
ERR373946
|
Sensitive
|
lineage4.9
|
None
|
ERR9786645
|
Other
|
lineage4.6.2.2
|
None
|
SRR26399265
|
Other
|
lineage2.2.1
|
None
|
ERR245675
|
Sensitive
|
lineage1.1.2
|
None
|
ERR4798262
|
HR-TB
|
La1.2.BCG
|
None
|
ERR11252558
|
Other
|
lineage4.6.3;lineage4.9
|
None
|
ERR363456
|
Sensitive
|
lineage4.9
|
None
|
SRR6046196
|
Other
|
La1.7;M.canetti;lineage4.9
|
None
|
SRR1173118
|
Other
|
lineage2.2.1
|
None
|
SRR1172857
|
Other
|
|
None
|
ERR9787197
|
Other
|
|
None
|
SRR29093105
|
Other
|
lineage2.2.2;lineage4
|
None
|
ERR9786671
|
Other
|
|
None
|
SRR28119756
|
Other
|
lineage4.9;lineage6.3
|
None
|
ERR926156
|
Sensitive
|
lineage4.9
|
None
|
ERR926165
|
Sensitive
|
lineage4.9
|
None
|
SRR5341333
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR13265528
|
Other
|
lineage4.9;lineage6.3
|
None
|
ERR1063858
|
HR-TB
|
lineage4.9
|
None
|
SRR6045242
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR323062
|
Sensitive
|
lineage4.9
|
None
|
ERR3283042
|
Other
|
lineage4.9
|
None
|
ERR9786694
|
Other
|
lineage4.1.2.1
|
None
|
ERR3283027
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR1173778
|
Other
|
lineage4.9
|
None
|
SRR19304036
|
Other
|
La3;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR176651
|
Other
|
lineage4.9
|
None
|
ERR9786569
|
Other
|
lineage4.8
|
None
|
ERR3283040
|
HR-TB
|
lineage4.9
|
None
|
SRR3675222
|
Other
|
La1.7
|
None
|
SRR1196583
|
Other
|
lineage4.9
|
None
|
ERR3797029
|
Other
|
lineage4.9
|
None
|
SRR3675571
|
HR-TB
|
M.canetti;lineage4.2;lineage4.9
|
None
|
ERR736872
|
HR-TB
|
lineage4.9
|
None
|
ERR4798431
|
Sensitive
|
lineage4.1;lineage4.9
|
None
|
ERR4810624
|
MDR-TB
|
lineage2.2
|
None
|
ERR176568
|
HR-TB
|
La3;lineage2.1;lineage4.9
|
None
|
ERR9787139
|
Other
|
lineage6.3.1
|
None
|
ERR736871
|
HR-TB
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR4811075
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR363498
|
Sensitive
|
lineage4.9
|
None
|
ERR502511
|
Sensitive
|
lineage4.9
|
None
|
SRR1184388
|
Other
|
lineage2.1;lineage4.9
|
None
|
SRR3675520
|
Other
|
La1.7.X-unk4;lineage4.9
|
None
|
ERR4817896
|
HR-TB
|
lineage2.2.1
|
None
|
SRR5341313
|
Sensitive
|
La1.7;lineage4.9;lineage7
|
None
|
ERR3797069
|
Other
|
lineage4.9
|
None
|
ERR9117721
|
HR-TB
|
La3;lineage1.1.2
|
None
|
SRR9970980
|
HR-TB
|
lineage4.1.2
|
None
|
ERR3797048
|
Other
|
La3;lineage4.9
|
None
|
SRR1196677
|
Other
|
lineage2.2
|
None
|
SRR3675529
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR6044790
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR736848
|
Other
|
lineage4.9
|
None
|
SRR3675267
|
Other
|
La1.7;lineage4.9
|
None
|
ERR323045
|
HR-TB
|
lineage1;lineage4.9
|
None
|
ERR502510
|
Sensitive
|
lineage4.9
|
None
|
SRR6046066
|
Other
|
lineage4.9
|
None
|
ERR2027263
|
Other
|
lineage4
|
None
|
ERR3797015
|
HR-TB
|
lineage4.9
|
None
|
SRR6789626
|
Other
|
|
None
|
ERR3283047
|
Sensitive
|
La3;lineage4.9
|
None
|
ERR3797063
|
Sensitive
|
La3;lineage4.9
|
None
|
ERR161037
|
Other
|
lineage4.9
|
None
|
ERR926161
|
Sensitive
|
lineage4.9
|
None
|
SRR1184380
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR3273109
|
HR-TB
|
lineage4
|
None
|
ERR4817731
|
HR-TB
|
lineage4.9
|
None
|
ERR3797064
|
Other
|
La3;lineage4.9
|
None
|
ERR1035122
|
Sensitive
|
lineage4.9
|
None
|
ERR736859
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR3290633
|
Other
|
lineage4.2;lineage4.6.3;lineage4.9.1
|
None
|
ERR4816100
|
Sensitive
|
lineage1.1.2;lineage4.1.2.1;lineage4.1.3
|
None
|
ERR926164
|
Other
|
lineage4.9
|
None
|
ERR1063849
|
HR-TB
|
lineage4.9
|
None
|
SRR1172817
|
Other
|
La3
|
None
|
ERR473332
|
Other
|
lineage4.9
|
None
|
ERR702404
|
HR-TB
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR11465352
|
Sensitive
|
lineage4.3.4.1
|
None
|
ERR363447
|
Other
|
lineage4.9
|
None
|
SRR6045706
|
Sensitive
|
lineage4.9
|
None
|
ERR9787153
|
Other
|
lineage6.1.3
|
None
|
ERR323043
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR373947
|
Other
|
lineage4.9
|
None
|
SRR3675517
|
Other
|
La3;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR212125
|
HR-TB
|
lineage4.9
|
None
|
SRR3675490
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR6046225
|
Other
|
lineage4.9;lineage6.3
|
None
|
ERR3283018
|
HR-TB
|
lineage4.9
|
None
|
ERR4796929
|
Sensitive
|
lineage4.9
|
None
|
ERR502912
|
Other
|
lineage2.2.1
|
None
|
ERR4800527
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR12416824
|
HR-TB
|
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3
|
None
|
ERR3283025
|
MDR-TB
|
La1.7;lineage4.9
|
None
|
ERR9786642
|
Other
|
lineage4.1.2.1
|
None
|