TB-Profiler result

Run: ERR9786711
Summary

Run ID: ERR9786711

Sample name:

Date: 02-04-2023 12:42:08

Number of reads: 2884229

Percentage reads mapped: 78.73

Strain: lineage4.6.2.2

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 0.91
lineage4.6 Euro-American T;LAM None 0.99
lineage4.6.2 Euro-American T;LAM RD726 0.96
lineage4.6.2.2 Euro-American (Cameroon) LAM10-CAM RD726 0.97
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6238 c.999G>A synonymous_variant 0.23
gyrB 6242 p.Arg335Lys missense_variant 0.23
gyrB 6250 c.1011A>G synonymous_variant 0.24
gyrB 6280 c.1041T>C synonymous_variant 0.25
gyrB 6286 c.1047T>C synonymous_variant 0.25
gyrB 6292 c.1053G>C synonymous_variant 0.21
gyrB 6295 c.1056A>G synonymous_variant 0.25
gyrA 6307 c.-995T>G upstream_gene_variant 0.26
gyrA 6310 c.-992G>C upstream_gene_variant 0.19
gyrA 6319 c.-983G>C upstream_gene_variant 0.24
gyrA 6328 c.-974C>T upstream_gene_variant 0.18
gyrA 6362 c.-940T>C upstream_gene_variant 0.2
gyrA 6382 c.-920A>G upstream_gene_variant 0.2
gyrA 6388 c.-914T>C upstream_gene_variant 0.2
gyrA 6403 c.-899T>C upstream_gene_variant 0.2
gyrA 6415 c.-887G>C upstream_gene_variant 0.19
gyrA 6418 c.-884C>G upstream_gene_variant 0.19
gyrA 6427 c.-875T>C upstream_gene_variant 0.21
gyrA 6583 c.-719G>C upstream_gene_variant 0.19
gyrA 6700 c.-602T>C upstream_gene_variant 0.19
gyrA 6703 c.-599G>C upstream_gene_variant 0.2
gyrA 6709 c.-593A>G upstream_gene_variant 0.19
gyrA 6730 c.-572A>G upstream_gene_variant 0.19
gyrA 6745 c.-557T>C upstream_gene_variant 0.2
gyrA 6760 c.-542G>T upstream_gene_variant 0.17
gyrA 6793 c.-509T>C upstream_gene_variant 0.22
gyrB 6797 p.Gly520Ser missense_variant 0.16
gyrA 6808 c.-494C>T upstream_gene_variant 0.17
gyrA 6841 c.-461T>C upstream_gene_variant 0.24
gyrA 6847 c.-455C>T upstream_gene_variant 0.25
gyrA 6856 c.-446T>C upstream_gene_variant 0.25
gyrA 6862 c.-440C>G upstream_gene_variant 0.22
gyrA 6869 c.-433T>C upstream_gene_variant 0.2
gyrA 6889 c.-413G>C upstream_gene_variant 0.2
gyrA 6898 c.-404G>C upstream_gene_variant 0.2
gyrA 6904 c.-398C>G upstream_gene_variant 0.31
gyrA 6919 c.-383T>C upstream_gene_variant 0.32
gyrA 6925 c.-377T>C upstream_gene_variant 0.31
gyrA 6931 c.-371A>G upstream_gene_variant 0.3
gyrA 6934 c.-368A>G upstream_gene_variant 0.3
gyrA 6949 c.-353A>G upstream_gene_variant 0.29
gyrA 6950 c.-352_-350delCTCinsTTG upstream_gene_variant 0.19
gyrA 6967 c.-335T>C upstream_gene_variant 0.33
gyrA 6970 c.-332C>T upstream_gene_variant 0.33
gyrA 6976 c.-326A>G upstream_gene_variant 0.21
gyrA 6994 c.-308C>G upstream_gene_variant 0.21
gyrA 7006 c.-296T>C upstream_gene_variant 0.32
gyrA 7010 c.-292C>T upstream_gene_variant 0.22
gyrA 7018 c.-284G>C upstream_gene_variant 0.32
gyrA 7033 c.-269G>C upstream_gene_variant 0.33
gyrA 7057 c.-245C>G upstream_gene_variant 0.3
gyrA 7060 c.-242T>C upstream_gene_variant 0.3
gyrA 7066 c.-236G>C upstream_gene_variant 0.28
gyrA 7078 c.-224A>G upstream_gene_variant 0.19
gyrA 7084 c.-218A>G upstream_gene_variant 0.24
gyrA 7093 c.-209T>C upstream_gene_variant 0.25
gyrA 7147 c.-155G>C upstream_gene_variant 0.18
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7427 c.126G>C synonymous_variant 0.23
gyrA 7451 c.150C>G synonymous_variant 0.24
gyrA 7457 c.156T>C synonymous_variant 0.23
gyrA 7480 p.Phe60Tyr missense_variant 0.24
gyrA 7484 c.183T>C synonymous_variant 0.25
gyrA 7490 c.189C>G synonymous_variant 0.26
gyrA 7523 c.222C>G synonymous_variant 0.25
gyrA 7541 c.240C>G synonymous_variant 0.25
gyrA 7547 c.246C>T synonymous_variant 0.25
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 7607 c.306C>G synonymous_variant 0.22
gyrA 7622 c.321C>T synonymous_variant 0.18
gyrA 7652 c.351C>T synonymous_variant 0.17
gyrA 8177 c.876A>C synonymous_variant 0.19
gyrA 8207 c.906T>C synonymous_variant 0.19
gyrA 8210 c.909G>A synonymous_variant 0.19
gyrA 8219 c.918T>C synonymous_variant 0.19
gyrA 8225 c.924T>C synonymous_variant 0.2
gyrA 8235 c.934_936delTTAinsCTG synonymous_variant 0.2
gyrA 8247 p.Ile316Val missense_variant 0.2
gyrA 8264 c.963T>C synonymous_variant 0.2
gyrA 8283 p.Ile328Leu missense_variant 0.22
gyrA 8288 c.987T>C synonymous_variant 0.21
gyrA 8294 c.993T>C synonymous_variant 0.24
gyrA 8324 c.1023T>C synonymous_variant 0.24
gyrA 8339 c.1038A>G synonymous_variant 0.19
gyrA 8366 c.1065G>C synonymous_variant 0.21
gyrA 8375 c.1074G>C synonymous_variant 0.2
gyrA 8382 p.Leu361Met missense_variant 0.18
gyrA 8453 c.1152A>C synonymous_variant 0.19
gyrA 8459 c.1158G>A synonymous_variant 0.2
gyrA 8462 c.1161A>G synonymous_variant 0.18
gyrA 8471 c.1170T>C synonymous_variant 0.2
gyrA 8480 c.1179C>T synonymous_variant 0.22
gyrA 8486 c.1185T>C synonymous_variant 0.21
gyrA 8627 c.1326C>G synonymous_variant 0.19
gyrA 8633 c.1332C>G synonymous_variant 0.2
gyrA 8636 c.1335A>C synonymous_variant 0.2
gyrA 8642 c.1341A>G synonymous_variant 0.22
gyrA 8672 c.1371A>G synonymous_variant 0.22
gyrA 8693 c.1392T>C synonymous_variant 0.23
gyrA 8711 c.1410A>C synonymous_variant 0.22
gyrA 8729 c.1428T>C synonymous_variant 0.23
gyrA 8731 p.Gly477Ala missense_variant 0.21
gyrA 8756 c.1455A>G synonymous_variant 0.22
gyrA 8762 c.1461G>C synonymous_variant 0.22
gyrA 8767 p.Arg489Lys missense_variant 0.22
gyrA 8783 c.1482G>T synonymous_variant 0.24
gyrA 8810 c.1509A>C synonymous_variant 0.26
gyrA 8828 c.1527T>C synonymous_variant 0.26
gyrA 8829 c.1528T>C synonymous_variant 0.26
gyrA 8852 c.1551T>C synonymous_variant 0.25
gyrA 8858 c.1557T>C synonymous_variant 0.25
gyrA 8867 c.1566A>G synonymous_variant 0.24
gyrA 8873 c.1572A>C synonymous_variant 0.23
gyrA 8897 c.1596T>C synonymous_variant 0.23
gyrA 8903 c.1602T>C synonymous_variant 0.24
gyrA 8939 c.1638T>C synonymous_variant 0.23
gyrA 8942 c.1641G>C synonymous_variant 0.23
gyrA 8946 c.1645_1647delTTGinsCTC synonymous_variant 0.23
gyrA 8996 c.1695T>C synonymous_variant 0.23
gyrA 8998 p.Leu566Trp missense_variant 0.23
gyrA 9017 c.1716C>G synonymous_variant 0.21
gyrA 9023 c.1722A>C synonymous_variant 0.22
gyrA 9029 c.1728T>G synonymous_variant 0.22
gyrA 9051 c.1750T>C synonymous_variant 0.2
gyrA 9065 c.1764C>G synonymous_variant 0.21
gyrA 9099 c.1798_1800delTTAinsCTG synonymous_variant 0.19
gyrA 9119 c.1818A>G synonymous_variant 0.19
gyrA 9143 c.1842T>C synonymous_variant 0.2
gyrA 9153 p.Thr618Glu missense_variant 0.19
gyrA 9179 c.1878C>G synonymous_variant 0.23
gyrA 9200 c.1899A>G synonymous_variant 0.23
gyrA 9204 p.Ser635Thr missense_variant 0.24
gyrA 9230 c.1929T>C synonymous_variant 0.24
gyrA 9233 c.1932C>T synonymous_variant 0.24
gyrA 9252 p.Val651Ile missense_variant 0.25
gyrA 9263 c.1962C>T synonymous_variant 0.16
gyrA 9268 p.Asn656Ser missense_variant 0.24
gyrA 9296 c.1995T>C synonymous_variant 0.22
gyrA 9304 p.Gly668Asp missense_variant 1.0
gyrA 9345 c.2044A>C synonymous_variant 0.24
gyrA 9377 c.2076A>G synonymous_variant 0.22
gyrA 9383 c.2082T>C synonymous_variant 0.23
gyrA 9395 c.2094G>C synonymous_variant 0.22
gyrA 9429 p.Arg710Trp missense_variant 0.16
fgd1 490948 p.Ser56Ala missense_variant 0.19
fgd1 490974 c.192T>C synonymous_variant 0.21
fgd1 490980 p.Asn66Lys missense_variant 0.21
fgd1 491007 c.225G>C synonymous_variant 0.22
fgd1 491013 c.231C>G synonymous_variant 0.22
fgd1 491064 c.282A>C synonymous_variant 0.21
fgd1 491083 p.Val101Ile missense_variant 0.22
fgd1 491091 c.309T>C synonymous_variant 0.24
fgd1 491097 c.315G>C synonymous_variant 0.25
fgd1 491121 c.339A>G synonymous_variant 0.24
fgd1 491144 p.Ala121Asp missense_variant 0.23
fgd1 491181 c.399T>C synonymous_variant 0.24
fgd1 491191 p.Gly137Arg missense_variant 0.25
fgd1 491196 c.414A>G synonymous_variant 0.26
fgd1 491202 c.420G>C synonymous_variant 0.25
fgd1 491203 p.Gln141Glu missense_variant 0.25
fgd1 491212 p.Ser144Arg missense_variant 0.25
fgd1 491217 c.435T>C synonymous_variant 0.24
fgd1 491232 c.450T>C synonymous_variant 0.25
fgd1 491241 p.Asp153Glu missense_variant 0.23
fgd1 491244 c.462T>C synonymous_variant 0.24
fgd1 491286 c.504G>C synonymous_variant 0.19
fgd1 491292 c.510G>C synonymous_variant 0.22
fgd1 491296 p.Val172Ile missense_variant 0.22
fgd1 491340 c.558C>A synonymous_variant 0.2
fgd1 491355 c.573C>G synonymous_variant 0.2
fgd1 491364 c.582T>C synonymous_variant 0.21
fgd1 491367 c.585G>C synonymous_variant 0.21
mshA 575771 p.Val142Ser missense_variant 0.2
mshA 575779 c.432A>G synonymous_variant 0.21
mshA 575785 c.438T>C synonymous_variant 0.2
ccsA 620288 p.Arg133Gln missense_variant 0.17
rpoB 760130 p.Asp108Glu missense_variant 0.2
rpoB 760139 c.333A>G synonymous_variant 0.2
rpoB 760142 c.336C>G synonymous_variant 0.2
rpoB 760184 c.378A>G synonymous_variant 0.22
rpoB 760196 c.390C>G synonymous_variant 0.22
rpoB 760235 c.429T>C synonymous_variant 0.25
rpoB 760283 c.477G>C synonymous_variant 0.25
rpoB 760340 c.534G>C synonymous_variant 0.22
rpoB 760361 c.555T>C synonymous_variant 0.23
rpoB 760373 c.567C>G synonymous_variant 0.18
rpoB 760376 p.Asp190Glu missense_variant 0.22
rpoB 760430 c.624T>C synonymous_variant 0.19
rpoB 760533 p.Val243Ile missense_variant 0.16
rpoB 760563 p.Arg253Met missense_variant 0.19
rpoB 760591 p.Val262Ala missense_variant 0.19
rpoB 760611 c.805T>C synonymous_variant 0.2
rpoB 760830 c.1024T>C synonymous_variant 0.19
rpoB 760845 p.Thr347Ala missense_variant 0.2
rpoB 760859 c.1053T>C synonymous_variant 0.2
rpoB 760862 c.1056G>C synonymous_variant 0.21
rpoB 760869 p.Val355Ile missense_variant 0.16
rpoB 760886 c.1080A>G synonymous_variant 0.23
rpoB 760919 c.1113C>G synonymous_variant 0.24
rpoB 760925 c.1119T>C synonymous_variant 0.25
rpoB 760946 c.1140A>G synonymous_variant 0.25
rpoB 760973 c.1167G>C synonymous_variant 0.26
rpoB 760982 c.1176G>C synonymous_variant 0.26
rpoB 761006 c.1200C>T synonymous_variant 0.21
rpoB 761015 c.1209G>C synonymous_variant 0.28
rpoB 761027 c.1221A>G synonymous_variant 0.28
rpoB 761036 c.1230G>C synonymous_variant 0.27
rpoB 761037 c.1231T>C synonymous_variant 0.28
rpoB 761057 c.1251G>C synonymous_variant 0.31
rpoB 761097 c.1291_1293delAGCinsTCG synonymous_variant 0.3
rpoB 761102 c.1296A>G synonymous_variant 0.3
rpoB 761132 c.1326G>A synonymous_variant 0.22
rpoB 761133 c.1327T>C synonymous_variant 0.32
rpoB 761150 c.1344A>C synonymous_variant 0.35
rpoB 761165 c.1359G>C synonymous_variant 0.3
rpoB 761180 c.1374A>C synonymous_variant 0.34
rpoB 761189 c.1383T>C synonymous_variant 0.32
rpoB 761195 c.1389G>C synonymous_variant 0.34
rpoB 761198 c.1392G>C synonymous_variant 0.25
rpoB 761204 c.1398C>G synonymous_variant 0.25
rpoB 761234 c.1428G>C synonymous_variant 0.31
rpoB 761249 c.1443A>G synonymous_variant 0.3
rpoB 761255 c.1449T>G synonymous_variant 0.28
rpoB 761261 c.1455G>T synonymous_variant 0.29
rpoB 761264 c.1458C>G synonymous_variant 0.29
rpoB 761327 c.1521A>G synonymous_variant 0.26
rpoB 761354 c.1548C>T synonymous_variant 0.27
rpoB 761360 c.1554T>C synonymous_variant 0.27
rpoB 761375 c.1569G>C synonymous_variant 0.26
rpoB 761414 c.1608A>G synonymous_variant 0.31
rpoB 761423 c.1617T>C synonymous_variant 0.3
rpoB 761435 c.1629T>C synonymous_variant 0.31
rpoB 761438 c.1632G>C synonymous_variant 0.31
rpoB 761444 c.1638T>C synonymous_variant 0.31
rpoB 761447 c.1641C>G synonymous_variant 0.28
rpoB 761457 p.Pro551Gly missense_variant 0.27
rpoB 761465 c.1659G>C synonymous_variant 0.3
rpoB 761492 c.1686G>C synonymous_variant 0.35
rpoB 761495 c.1689G>A synonymous_variant 0.28
rpoB 761510 c.1704T>C synonymous_variant 0.37
rpoB 761531 c.1725C>G synonymous_variant 0.32
rpoB 761537 c.1731C>G synonymous_variant 0.32
rpoB 761561 c.1755C>G synonymous_variant 0.29
rpoB 761564 c.1758G>C synonymous_variant 0.29
rpoB 761570 c.1764T>C synonymous_variant 0.31
rpoB 761573 c.1767C>G synonymous_variant 0.3
rpoB 761579 c.1773G>C synonymous_variant 0.32
rpoB 761606 c.1800C>G synonymous_variant 0.34
rpoB 761612 c.1806G>C synonymous_variant 0.27
rpoB 761615 c.1809A>C synonymous_variant 0.34
rpoB 761636 c.1830G>T synonymous_variant 0.31
rpoB 761645 c.1839C>G synonymous_variant 0.28
rpoB 761648 c.1842T>C synonymous_variant 0.28
rpoB 761657 c.1851C>G synonymous_variant 0.28
rpoB 761675 c.1869G>C synonymous_variant 0.29
rpoB 761711 c.1905C>G synonymous_variant 0.28
rpoB 761727 p.Ser641Gly missense_variant 0.22
rpoB 761728 c.1923dupC frameshift_variant 0.24
rpoB 761732 c.1926C>G synonymous_variant 0.26
rpoB 761735 c.1929C>G synonymous_variant 0.29
rpoB 761747 c.1941G>C synonymous_variant 0.31
rpoB 761750 c.1944G>C synonymous_variant 0.3
rpoB 761765 c.1959T>C synonymous_variant 0.31
rpoB 761772 p.His656Ala missense_variant 0.32
rpoB 761778 p.Asn658Asp missense_variant 0.32
rpoB 761791 p.Arg662His missense_variant 0.3
rpoB 761813 c.2007T>C synonymous_variant 0.26
rpoB 761816 c.2010C>G synonymous_variant 0.26
rpoB 761834 c.2028T>G synonymous_variant 0.22
rpoB 761848 p.Cys681Ser missense_variant 0.24
rpoB 761852 c.2046C>G synonymous_variant 0.25
rpoB 761867 c.2061C>T synonymous_variant 0.2
rpoB 761873 c.2067A>C synonymous_variant 0.19
rpoB 761885 c.2079T>C synonymous_variant 0.26
rpoB 761891 c.2085G>C synonymous_variant 0.27
rpoB 761909 c.2103T>C synonymous_variant 0.22
rpoB 761912 c.2106T>C synonymous_variant 0.22
rpoB 761915 p.Asp703Glu missense_variant 0.22
rpoB 761916 p.Asp704Asn missense_variant 0.22
rpoB 761948 c.2142G>C synonymous_variant 0.29
rpoB 761954 c.2148C>G synonymous_variant 0.28
rpoB 761999 c.2193G>C synonymous_variant 0.27
rpoB 762053 c.2247T>C synonymous_variant 0.27
rpoB 762065 c.2259T>C synonymous_variant 0.3
rpoB 762083 c.2277T>C synonymous_variant 0.26
rpoB 762086 c.2280G>C synonymous_variant 0.26
rpoB 762098 c.2292C>G synonymous_variant 0.2
rpoB 762101 c.2295C>G synonymous_variant 0.28
rpoB 762114 p.Ile770Val missense_variant 0.27
rpoB 762122 c.2316C>T synonymous_variant 0.2
rpoB 762140 c.2334G>C synonymous_variant 0.22
rpoB 762143 c.2337T>C synonymous_variant 0.3
rpoB 762149 c.2343G>C synonymous_variant 0.29
rpoB 762158 c.2352G>C synonymous_variant 0.22
rpoB 762167 c.2361T>C synonymous_variant 0.22
rpoB 762176 c.2370T>C synonymous_variant 0.22
rpoB 762185 c.2379G>C synonymous_variant 0.29
rpoB 762218 c.2412T>C synonymous_variant 0.23
rpoB 762233 c.2427G>C synonymous_variant 0.29
rpoB 762254 c.2448T>C synonymous_variant 0.3
rpoB 762257 c.2451C>G synonymous_variant 0.3
rpoB 762266 c.2460T>C synonymous_variant 0.3
rpoB 762284 c.2478G>C synonymous_variant 0.27
rpoB 762293 c.2487T>C synonymous_variant 0.25
rpoB 762296 c.2490G>C synonymous_variant 0.24
rpoB 762317 c.2511A>G synonymous_variant 0.25
rpoB 762329 c.2523G>C synonymous_variant 0.27
rpoB 762338 c.2532T>C synonymous_variant 0.28
rpoB 762347 c.2541T>C synonymous_variant 0.27
rpoB 762362 p.Glu852Asp missense_variant 0.26
rpoB 762369 c.2563T>C synonymous_variant 0.26
rpoC 762380 c.-990T>G upstream_gene_variant 0.19
rpoC 762389 c.-981G>A upstream_gene_variant 0.18
rpoC 762395 c.-975G>C upstream_gene_variant 0.18
rpoC 762398 c.-972T>C upstream_gene_variant 0.23
rpoC 762401 c.-969G>A upstream_gene_variant 0.17
rpoC 762410 c.-960T>C upstream_gene_variant 0.28
rpoC 762416 c.-954A>G upstream_gene_variant 0.26
rpoC 762434 c.-936T>C upstream_gene_variant 0.23
rpoC 762443 c.-927G>C upstream_gene_variant 0.23
rpoC 762470 c.-900G>C upstream_gene_variant 0.22
rpoC 762509 c.-861T>G upstream_gene_variant 0.18
rpoC 762551 c.-819C>T upstream_gene_variant 0.2
rpoC 762581 c.-789T>C upstream_gene_variant 0.2
rpoB 762630 p.Ala942Thr missense_variant 0.17
rpoC 762701 c.-669T>C upstream_gene_variant 0.19
rpoC 762728 c.-642C>G upstream_gene_variant 0.2
rpoC 762753 c.-617T>C upstream_gene_variant 0.24
rpoB 762759 p.Cys985Ala missense_variant 0.19
rpoC 762782 c.-588T>C upstream_gene_variant 0.21
rpoB 762785 p.Asp993Glu missense_variant 0.24
rpoC 762791 c.-579G>C upstream_gene_variant 0.2
rpoB 762795 p.Asp997Asn missense_variant 0.2
rpoB 762799 p.Ala998Gly missense_variant 0.25
rpoC 762812 c.-558C>G upstream_gene_variant 0.25
rpoB 762813 p.Met1003Val missense_variant 0.27
rpoC 762818 c.-552C>G upstream_gene_variant 0.27
rpoC 762827 c.-543G>C upstream_gene_variant 0.27
rpoC 762857 c.-513C>G upstream_gene_variant 0.28
rpoC 762860 c.-510G>C upstream_gene_variant 0.28
rpoC 762863 c.-507T>C upstream_gene_variant 0.28
rpoB 762868 p.Tyr1021Phe missense_variant 0.24
rpoC 762929 c.-441G>C upstream_gene_variant 0.29
rpoC 762995 c.-375G>T upstream_gene_variant 0.34
rpoC 763028 c.-342T>C upstream_gene_variant 0.32
rpoC 763031 c.-339T>C upstream_gene_variant 0.27
rpoC 763034 c.-336C>G upstream_gene_variant 0.34
rpoC 763040 c.-330C>G upstream_gene_variant 0.36
rpoC 763070 c.-300T>C upstream_gene_variant 0.38
rpoC 763076 c.-294C>G upstream_gene_variant 0.3
rpoC 763085 c.-285C>G upstream_gene_variant 0.39
rpoC 763115 c.-255T>C upstream_gene_variant 0.31
rpoC 763127 c.-243G>C upstream_gene_variant 0.22
rpoC 763166 c.-204A>G upstream_gene_variant 0.22
rpoC 763250 c.-120C>T upstream_gene_variant 0.2
rpoC 763253 c.-117G>C upstream_gene_variant 0.2
rpoC 763352 c.-18T>A upstream_gene_variant 0.16
rpoC 763411 c.42T>G synonymous_variant 0.23
rpoC 763414 c.45T>C synonymous_variant 0.23
rpoC 763441 c.72C>T synonymous_variant 0.26
rpoC 763444 c.75T>C synonymous_variant 0.26
rpoC 763456 c.87A>G synonymous_variant 0.26
rpoC 763486 c.117T>G synonymous_variant 0.32
rpoC 763528 c.159G>A synonymous_variant 0.33
rpoC 763531 c.162G>T synonymous_variant 0.25
rpoC 763546 c.177A>G synonymous_variant 0.35
rpoC 763570 c.201G>C synonymous_variant 0.3
rpoC 763573 c.204G>C synonymous_variant 0.35
rpoC 763594 c.225C>T synonymous_variant 0.36
rpoC 763633 c.264T>C synonymous_variant 0.25
rpoC 763660 c.291T>G synonymous_variant 0.35
rpoC 763666 c.297G>C synonymous_variant 0.25
rpoC 763669 c.300C>G synonymous_variant 0.24
rpoC 763675 c.306C>G synonymous_variant 0.33
rpoC 763702 c.333C>G synonymous_variant 0.33
rpoC 763717 c.348T>C synonymous_variant 0.31
rpoC 763723 c.354G>C synonymous_variant 0.33
rpoC 763729 c.360G>C synonymous_variant 0.24
rpoC 763741 c.372C>T synonymous_variant 0.32
rpoC 763744 c.375G>C synonymous_variant 0.32
rpoC 763765 c.396T>G synonymous_variant 0.3
rpoC 763768 c.399C>G synonymous_variant 0.27
rpoC 763774 c.405G>C synonymous_variant 0.35
rpoC 763780 c.411C>G synonymous_variant 0.26
rpoC 763792 p.Glu141Asp missense_variant 0.38
rpoC 763801 c.432C>G synonymous_variant 0.3
rpoC 763807 c.438T>C synonymous_variant 0.37
rpoC 763813 c.444C>G synonymous_variant 0.26
rpoC 763835 p.Ala156Met missense_variant 0.33
rpoC 763851 p.Ala161Gly missense_variant 0.21
rpoC 763855 c.486C>T synonymous_variant 0.27
rpoC 763858 c.489A>G synonymous_variant 0.27
rpoC 763872 p.Gly168Ala missense_variant 0.3
rpoC 763876 c.507A>G synonymous_variant 0.25
rpoC 763879 c.510A>G synonymous_variant 0.29
rpoC 763888 c.519G>T synonymous_variant 0.25
rpoC 763894 c.525A>G synonymous_variant 0.31
rpoC 763939 c.570G>A synonymous_variant 0.26
rpoC 763948 c.579G>C synonymous_variant 0.26
rpoC 763963 c.594C>G synonymous_variant 0.26
rpoC 763978 c.609C>T synonymous_variant 0.26
rpoC 763996 c.627T>C synonymous_variant 0.3
rpoC 764005 c.636G>C synonymous_variant 0.3
rpoC 764011 c.642T>C synonymous_variant 0.31
rpoC 764024 c.655T>C synonymous_variant 0.33
rpoC 764040 p.Ser224Asn missense_variant 0.28
rpoC 764044 c.675T>C synonymous_variant 0.32
rpoC 764059 c.690G>C synonymous_variant 0.31
rpoC 764083 c.714A>G synonymous_variant 0.32
rpoC 764098 c.729A>G synonymous_variant 0.33
rpoC 764099 p.Leu244Ile missense_variant 0.29
rpoC 764110 c.741C>G synonymous_variant 0.27
rpoC 764131 c.762T>C synonymous_variant 0.29
rpoC 764140 c.771C>T synonymous_variant 0.31
rpoC 764188 c.819A>G synonymous_variant 0.26
rpoC 764194 p.Glu275Asp missense_variant 0.21
rpoC 764203 c.834G>C synonymous_variant 0.2
rpoC 764206 p.Asp279Glu missense_variant 0.2
rpoC 764217 p.Asn283Ser missense_variant 0.19
rpoC 764248 c.879C>G synonymous_variant 0.19
rpoC 764266 c.897T>C synonymous_variant 0.22
rpoC 764269 c.900G>C synonymous_variant 0.23
rpoC 764278 c.909A>G synonymous_variant 0.23
rpoC 764365 c.996C>T synonymous_variant 0.23
rpoC 764387 c.1018T>C synonymous_variant 0.22
rpoC 764405 c.1036A>C synonymous_variant 0.23
rpoC 764431 c.1062G>C synonymous_variant 0.22
rpoC 764434 c.1065A>G synonymous_variant 0.22
rpoC 764446 c.1077T>C synonymous_variant 0.22
rpoC 764449 c.1080G>C synonymous_variant 0.22
rpoC 764452 c.1083T>C synonymous_variant 0.22
rpoC 764458 c.1089G>C synonymous_variant 0.22
rpoC 764461 c.1092A>G synonymous_variant 0.23
rpoC 764497 c.1128A>G synonymous_variant 0.24
rpoC 764521 c.1152T>C synonymous_variant 0.27
rpoC 764536 c.1167G>T synonymous_variant 0.19
rpoC 764539 c.1170C>G synonymous_variant 0.28
rpoC 764575 c.1206T>G synonymous_variant 0.27
rpoC 764578 c.1209C>G synonymous_variant 0.18
rpoC 764611 c.1242G>C synonymous_variant 0.27
rpoC 764626 c.1257C>T synonymous_variant 0.27
rpoC 764632 c.1263T>C synonymous_variant 0.27
rpoC 764650 c.1281G>T synonymous_variant 0.31
rpoC 764665 c.1296C>G synonymous_variant 0.23
rpoC 764695 c.1326T>C synonymous_variant 0.21
rpoC 764714 c.1345C>T synonymous_variant 0.21
rpoC 764749 c.1380G>C synonymous_variant 0.21
rpoC 764752 c.1383G>C synonymous_variant 0.32
rpoC 764764 c.1395T>C synonymous_variant 0.31
rpoC 764791 c.1422C>G synonymous_variant 0.3
rpoC 764803 c.1434C>T synonymous_variant 0.27
rpoC 764809 c.1440C>T synonymous_variant 0.27
rpoC 764815 c.1446A>G synonymous_variant 0.26
rpoC 764888 c.1519T>C synonymous_variant 0.21
rpoC 764932 c.1563C>G synonymous_variant 0.2
rpoC 764968 c.1599T>C synonymous_variant 0.2
rpoC 765383 p.Met672Leu missense_variant 0.19
rpoC 765404 p.Leu679Val missense_variant 0.2
rpoC 765409 c.2040T>C synonymous_variant 0.2
rpoC 765412 c.2043T>C synonymous_variant 0.2
rpoC 765421 c.2052C>G synonymous_variant 0.21
rpoC 765451 c.2082C>G synonymous_variant 0.25
rpoC 765466 c.2097C>T synonymous_variant 0.25
rpoC 765478 c.2109T>C synonymous_variant 0.27
rpoC 765499 c.2130C>G synonymous_variant 0.31
rpoC 765541 c.2172C>G synonymous_variant 0.3
rpoC 765553 c.2184C>T synonymous_variant 0.28
rpoC 765556 c.2187G>C synonymous_variant 0.28
rpoC 765562 c.2193G>C synonymous_variant 0.29
rpoC 765578 c.2209C>T synonymous_variant 0.26
rpoC 765583 c.2214G>C synonymous_variant 0.32
rpoC 765592 c.2223C>T synonymous_variant 0.25
rpoC 765658 c.2289C>T synonymous_variant 0.35
rpoC 765694 c.2325G>C synonymous_variant 0.25
rpoC 765700 c.2331T>C synonymous_variant 0.32
rpoC 765724 c.2355C>G synonymous_variant 0.24
rpoC 765734 c.2365_2367delTTGinsCTC synonymous_variant 0.3
rpoC 765739 c.2370G>C synonymous_variant 0.25
rpoC 765753 p.Asp795Ala missense_variant 0.33
rpoC 765772 c.2403C>G synonymous_variant 0.32
rpoC 765784 c.2415C>G synonymous_variant 0.32
rpoC 765793 c.2424C>G synonymous_variant 0.31
rpoC 765796 c.2427C>T synonymous_variant 0.31
rpoC 765811 c.2442T>C synonymous_variant 0.27
rpoC 765826 c.2457T>C synonymous_variant 0.35
rpoC 765835 c.2466C>T synonymous_variant 0.37
rpoC 765883 c.2514C>G synonymous_variant 0.26
rpoC 765937 c.2568T>C synonymous_variant 0.27
rpoC 765979 c.2610C>G synonymous_variant 0.34
rpoC 765982 c.2613C>T synonymous_variant 0.33
rpoC 765994 c.2625A>C synonymous_variant 0.26
rpoC 766010 c.2641_2642delTCinsAG synonymous_variant 0.28
rpoC 766021 c.2652G>C synonymous_variant 0.28
rpoC 766027 c.2658G>C synonymous_variant 0.28
rpoC 766081 c.2712T>C synonymous_variant 0.2
rpoC 766082 p.Ala905Gln missense_variant 0.2
rpoC 766087 c.2718C>G synonymous_variant 0.19
rpoC 766129 c.2760C>G synonymous_variant 0.19
rpoC 766141 c.2772C>T synonymous_variant 0.19
rpoC 766142 c.2773C>T synonymous_variant 0.19
rpoC 766178 p.Ile937Val missense_variant 0.18
rpoC 766207 c.2838T>C synonymous_variant 0.18
rpoC 766274 p.Ala969Thr missense_variant 0.17
rpoC 766288 c.2919C>G synonymous_variant 0.18
rpoC 766297 c.2928G>C synonymous_variant 0.21
rpoC 766312 c.2943T>C synonymous_variant 0.2
rpoC 766315 c.2946C>G synonymous_variant 0.23
rpoC 766345 c.2976T>C synonymous_variant 0.26
rpoC 766348 c.2979A>G synonymous_variant 0.26
rpoC 766363 c.2994G>C synonymous_variant 0.25
rpoC 766366 c.2997C>G synonymous_variant 0.22
rpoC 766381 c.3012C>T synonymous_variant 0.29
rpoC 766384 c.3015A>G synonymous_variant 0.29
rpoC 766393 c.3024C>G synonymous_variant 0.23
rpoC 766408 c.3039C>G synonymous_variant 0.27
rpoC 766426 c.3057C>T synonymous_variant 0.33
rpoC 766447 c.3078T>C synonymous_variant 0.34
rpoC 766462 c.3093G>T synonymous_variant 0.33
rpoC 766468 c.3099G>A synonymous_variant 0.28
rpoC 766483 c.3114G>C synonymous_variant 0.31
rpoC 766486 c.3117A>G synonymous_variant 0.28
rpoC 766492 c.3123T>C synonymous_variant 0.35
rpoC 766522 c.3153C>G synonymous_variant 0.37
rpoC 766528 c.3159T>G synonymous_variant 0.31
rpoC 766531 c.3162G>C synonymous_variant 0.29
rpoC 766573 c.3204T>C synonymous_variant 0.35
rpoC 766585 c.3216T>C synonymous_variant 0.39
rpoC 766594 c.3225G>C synonymous_variant 0.37
rpoC 766607 p.Ile1080Leu missense_variant 0.38
rpoC 766627 c.3258G>T synonymous_variant 0.29
rpoC 766630 c.3261G>C synonymous_variant 0.32
rpoC 766645 c.3276A>G synonymous_variant 0.29
rpoC 766651 c.3282T>C synonymous_variant 0.29
rpoC 766657 c.3288A>G synonymous_variant 0.35
rpoC 766666 c.3297C>G synonymous_variant 0.34
rpoC 766672 c.3303T>C synonymous_variant 0.33
rpoC 766708 c.3339A>G synonymous_variant 0.24
rpoC 766726 c.3357T>C synonymous_variant 0.31
rpoC 766738 c.3369G>C synonymous_variant 0.31
rpoC 766765 c.3396A>C synonymous_variant 0.31
rpoC 766774 c.3405T>C synonymous_variant 0.3
rpoC 766804 c.3435A>G synonymous_variant 0.3
rpoC 766813 c.3444G>C synonymous_variant 0.23
rpoC 766861 c.3492G>C synonymous_variant 0.22
rpoC 766864 c.3495G>C synonymous_variant 0.22
rpoC 766894 c.3525T>C synonymous_variant 0.25
rpoC 766895 c.3526T>C synonymous_variant 0.25
rpoC 766900 c.3531T>C synonymous_variant 0.27
rpoC 766933 c.3564A>G synonymous_variant 0.27
rpoC 766945 c.3576A>G synonymous_variant 0.28
rpoC 766963 c.3594T>C synonymous_variant 0.26
rpoC 766978 c.3609C>G synonymous_variant 0.21
rpoC 766996 c.3627C>T synonymous_variant 0.28
rpoC 767035 c.3666G>C synonymous_variant 0.23
rpoC 767059 c.3690T>G synonymous_variant 0.3
rpoC 767062 c.3693C>A synonymous_variant 0.3
rpoC 767098 c.3729T>C synonymous_variant 0.28
rpoC 767119 c.3750A>G synonymous_variant 0.28
rpoC 767134 c.3765C>A synonymous_variant 0.26
rpoC 767167 c.3798C>G synonymous_variant 0.24
rpoC 767180 p.Ala1271Gln missense_variant 0.24
rpoC 767191 c.3822C>G synonymous_variant 0.22
rpoC 767209 c.3840T>C synonymous_variant 0.21
rpoC 767221 c.3852C>G synonymous_variant 0.2
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpR5 778298 c.-692C>T upstream_gene_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 0.99
rpsL 781649 c.90T>C synonymous_variant 0.2
rpsL 781655 c.96T>C synonymous_variant 0.2
rpsL 781682 c.123T>C synonymous_variant 0.24
rpsL 781709 c.150G>C synonymous_variant 0.2
rpsL 781715 c.156T>C synonymous_variant 0.26
rpsL 781718 c.159C>G synonymous_variant 0.19
rpsL 781728 c.169T>C synonymous_variant 0.25
rpsL 781736 c.177T>C synonymous_variant 0.27
rpsL 781742 c.183C>G synonymous_variant 0.23
rpsL 781751 c.192G>C synonymous_variant 0.25
rpsL 781754 c.195G>C synonymous_variant 0.26
rpsL 781760 c.201T>C synonymous_variant 0.26
rpsL 781811 c.252C>T synonymous_variant 0.24
rpsL 781820 c.261G>C synonymous_variant 0.21
rpsL 781832 c.273T>C synonymous_variant 0.27
rpsL 781838 c.279G>C synonymous_variant 0.26
rpsL 781841 c.282C>G synonymous_variant 0.26
rpsL 781865 c.306G>C synonymous_variant 0.27
rpsL 781868 c.309T>C synonymous_variant 0.25
rpsL 781871 c.312G>C synonymous_variant 0.26
rpsL 781892 c.333A>G synonymous_variant 0.28
rpsL 781898 c.339A>T synonymous_variant 0.29
rpsL 781916 c.357T>C synonymous_variant 0.27
rpsL 781929 p.Gly124Ser missense_variant 0.27
rpsL 781933 c.374G>A splice_region_variant&stop_retained_variant 0.21
rplC 800715 c.-94A>C upstream_gene_variant 0.21
rplC 800723 c.-86C>G upstream_gene_variant 0.21
rplC 800738 c.-71T>C upstream_gene_variant 0.22
rplC 800747 c.-62C>G upstream_gene_variant 0.22
rplC 800815 c.7C>A synonymous_variant 0.17
rplC 801004 p.Leu66Val missense_variant 0.2
rplC 801027 c.219C>G synonymous_variant 0.21
rplC 801039 c.231A>G synonymous_variant 0.22
rplC 801054 c.246G>C synonymous_variant 0.2
rplC 801070 p.Asp88Asn missense_variant 0.19
rplC 801073 p.Ser89Pro missense_variant 0.19
rplC 801085 p.Thr93Ala missense_variant 0.19
rplC 801094 p.Gln96Glu missense_variant 0.19
rplC 801099 c.291T>C synonymous_variant 0.19
rplC 801102 c.294G>C synonymous_variant 0.19
rplC 801114 c.306C>G synonymous_variant 0.2
rplC 801132 c.324T>C synonymous_variant 0.22
rplC 801136 p.Ser110Ala missense_variant 0.21
rplC 801147 c.339T>C synonymous_variant 0.21
rplC 801156 c.348T>C synonymous_variant 0.22
rplC 801171 c.363A>G synonymous_variant 0.22
rplC 801174 c.366T>C synonymous_variant 0.22
rplC 801183 c.375C>A synonymous_variant 0.16
rplC 801222 c.414T>C synonymous_variant 0.29
rplC 801228 c.420T>C synonymous_variant 0.18
rplC 801249 c.441T>G synonymous_variant 0.19
rplC 801264 c.456C>T synonymous_variant 0.17
rplC 801267 c.459A>C synonymous_variant 0.24
rplC 801270 c.462T>C synonymous_variant 0.24
rplC 801276 c.468G>C synonymous_variant 0.25
rplC 801312 c.504G>C synonymous_variant 0.24
rplC 801321 c.513C>T synonymous_variant 0.23
rplC 801324 c.516T>C synonymous_variant 0.22
rplC 801341 p.Leu178Gln missense_variant 0.2
rplC 801348 c.540T>G synonymous_variant 0.21
rplC 801357 c.549T>C synonymous_variant 0.23
rplC 801387 c.579G>C synonymous_variant 0.18
rplC 801402 c.594T>C synonymous_variant 0.24
rplC 801405 c.597T>C synonymous_variant 0.25
rplC 801423 c.615G>C synonymous_variant 0.2
fbiC 1303608 c.678G>A synonymous_variant 0.17
fbiC 1303614 c.684C>T synonymous_variant 0.18
fbiC 1303632 c.702T>G synonymous_variant 0.2
fbiC 1303661 p.Val244Ala missense_variant 0.21
fbiC 1303695 c.765T>C synonymous_variant 0.23
fbiC 1303704 c.774T>C synonymous_variant 0.24
fbiC 1303708 c.778T>C synonymous_variant 0.23
fbiC 1303728 c.798G>A synonymous_variant 0.18
fbiC 1303731 c.801A>G synonymous_variant 0.23
fbiC 1303732 p.Ser268Pro missense_variant 0.23
fbiC 1303737 c.807G>A synonymous_variant 0.24
fbiC 1303746 c.816T>C synonymous_variant 0.24
fbiC 1303749 c.819G>C synonymous_variant 0.23
fbiC 1303752 c.822A>G synonymous_variant 0.24
fbiC 1303761 c.831T>C synonymous_variant 0.19
fbiC 1303788 c.858T>C synonymous_variant 0.23
fbiC 1303789 p.Ile287Val missense_variant 0.24
fbiC 1303794 c.864A>G synonymous_variant 0.22
fbiC 1303818 c.888C>G synonymous_variant 0.19
fbiC 1303854 c.924T>C synonymous_variant 0.18
fbiC 1303961 p.Arg344Leu missense_variant 0.19
fbiC 1303969 p.Val347Ile missense_variant 0.19
fbiC 1304008 c.1078T>C synonymous_variant 0.21
fbiC 1304022 c.1092T>C synonymous_variant 0.21
fbiC 1304040 c.1110C>G synonymous_variant 0.2
fbiC 1304050 c.1120T>C synonymous_variant 0.2
fbiC 1304115 c.1185A>G synonymous_variant 0.2
fbiC 1304691 c.1761G>C synonymous_variant 0.19
fbiC 1304694 c.1764A>G synonymous_variant 0.2
fbiC 1304703 c.1773C>G synonymous_variant 0.2
fbiC 1304711 p.Ala594Asp missense_variant 0.18
fbiC 1304724 c.1794A>G synonymous_variant 0.22
fbiC 1304757 c.1827A>G synonymous_variant 0.24
fbiC 1304763 c.1833C>G synonymous_variant 0.18
fbiC 1304778 p.Asp616Glu missense_variant 0.2
fbiC 1304784 c.1854T>G synonymous_variant 0.19
fbiC 1304787 c.1857T>C synonymous_variant 0.2
fbiC 1304790 c.1860C>G synonymous_variant 0.25
fbiC 1304799 c.1869G>C synonymous_variant 0.2
fbiC 1304802 c.1872G>C synonymous_variant 0.19
fbiC 1304808 c.1878C>G synonymous_variant 0.27
fbiC 1304811 c.1881C>G synonymous_variant 0.27
fbiC 1304817 c.1887T>C synonymous_variant 0.29
fbiC 1304829 c.1899T>C synonymous_variant 0.22
fbiC 1304856 c.1926C>G synonymous_variant 0.31
fbiC 1304869 c.1939C>T synonymous_variant 0.32
fbiC 1304877 c.1947T>C synonymous_variant 0.2
fbiC 1304893 p.Gly655Ser missense_variant 0.3
fbiC 1304916 c.1986T>C synonymous_variant 0.31
fbiC 1304925 c.1995G>C synonymous_variant 0.23
fbiC 1304928 c.1998T>C synonymous_variant 0.34
fbiC 1304937 c.2007G>C synonymous_variant 0.33
fbiC 1304940 c.2010A>G synonymous_variant 0.32
fbiC 1304958 c.2028T>C synonymous_variant 0.24
fbiC 1304970 c.2040G>C synonymous_variant 0.23
fbiC 1304994 c.2064A>G synonymous_variant 0.31
fbiC 1304995 p.Leu689Met missense_variant 0.27
fbiC 1305006 c.2076A>G synonymous_variant 0.23
fbiC 1305012 c.2082G>C synonymous_variant 0.27
fbiC 1305014 p.Thr695Ser missense_variant 0.27
fbiC 1305021 c.2091C>G synonymous_variant 0.23
fbiC 1305030 c.2100G>C synonymous_variant 0.23
fbiC 1305033 c.2103T>C synonymous_variant 0.25
fbiC 1305039 c.2109G>A synonymous_variant 0.21
fbiC 1305042 c.2112A>C synonymous_variant 0.22
fbiC 1305045 c.2115A>G synonymous_variant 0.27
fbiC 1305063 c.2133G>C synonymous_variant 0.26
fbiC 1305069 c.2139G>C synonymous_variant 0.21
fbiC 1305075 c.2145T>C synonymous_variant 0.18
fbiC 1305078 c.2148A>G synonymous_variant 0.19
fbiC 1305092 p.Ala721Gly missense_variant 0.19
fbiC 1305096 c.2166T>C synonymous_variant 0.18
fbiC 1305099 c.2169T>C synonymous_variant 0.18
fbiC 1305494 c.2565_*55delGGCCTAGCCCCGGCGACGATGCCGGGTCGCGGGATGCGGCCCGTTGAGGAGCGGGGCAATCT frameshift_variant&stop_lost&splice_region_variant 0.39
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471970 n.125G>A non_coding_transcript_exon_variant 0.21
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 0.22
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.23
rrs 1472489 n.644A>G non_coding_transcript_exon_variant 0.2
rrs 1472969 n.1124A>G non_coding_transcript_exon_variant 0.24
rrs 1472978 n.1133T>C non_coding_transcript_exon_variant 0.25
rrs 1473105 n.1260G>A non_coding_transcript_exon_variant 0.25
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.31
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.31
rrl 1473815 n.158T>C non_coding_transcript_exon_variant 0.2
rrl 1473877 n.220G>A non_coding_transcript_exon_variant 0.33
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.34
rrl 1473899 n.242A>C non_coding_transcript_exon_variant 0.33
rrl 1473924 n.267_268insT non_coding_transcript_exon_variant 0.21
rrl 1473943 n.286G>T non_coding_transcript_exon_variant 0.36
rrl 1473995 n.338G>T non_coding_transcript_exon_variant 0.37
rrl 1474001 n.344C>T non_coding_transcript_exon_variant 0.37
rrl 1474009 n.352A>G non_coding_transcript_exon_variant 0.34
rrl 1474012 n.355C>T non_coding_transcript_exon_variant 0.34
rrl 1474056 n.399T>C non_coding_transcript_exon_variant 0.25
rrl 1474061 n.404T>C non_coding_transcript_exon_variant 0.25
rrl 1474099 n.442G>A non_coding_transcript_exon_variant 0.26
rrl 1474103 n.446A>T non_coding_transcript_exon_variant 0.26
rrl 1474111 n.454T>C non_coding_transcript_exon_variant 0.3
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.3
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.28
rrl 1474181 n.524C>T non_coding_transcript_exon_variant 0.27
rrl 1474308 n.651G>T non_coding_transcript_exon_variant 0.23
rrl 1474310 n.653T>G non_coding_transcript_exon_variant 0.23
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.32
rrl 1474409 n.756_766delACCCACACGCG non_coding_transcript_exon_variant 0.23
rrl 1474427 n.770A>C non_coding_transcript_exon_variant 0.22
rrl 1474429 n.772G>C non_coding_transcript_exon_variant 0.22
rrl 1474435 n.780_783delGAAT non_coding_transcript_exon_variant 0.22
rrl 1474552 n.895C>T non_coding_transcript_exon_variant 0.26
rrl 1474627 n.970G>A non_coding_transcript_exon_variant 0.23
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.24
rrl 1474639 n.982G>A non_coding_transcript_exon_variant 0.33
rrl 1474717 n.1060A>T non_coding_transcript_exon_variant 0.23
rrl 1474794 n.1137C>A non_coding_transcript_exon_variant 0.21
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 0.28
rrl 1474961 n.1304T>G non_coding_transcript_exon_variant 0.25
rrl 1474963 n.1306G>A non_coding_transcript_exon_variant 0.25
rrl 1474964 n.1307T>A non_coding_transcript_exon_variant 0.16
rrl 1475006 n.1349A>G non_coding_transcript_exon_variant 0.2
rrl 1475061 n.1404C>T non_coding_transcript_exon_variant 0.31
rrl 1475088 n.1431A>T non_coding_transcript_exon_variant 0.3
rrl 1475206 n.1549C>T non_coding_transcript_exon_variant 0.25
rrl 1475209 n.1552G>C non_coding_transcript_exon_variant 0.25
rrl 1475220 n.1563G>A non_coding_transcript_exon_variant 0.2
rrl 1475249 n.1592T>C non_coding_transcript_exon_variant 0.24
rrl 1475252 n.1595C>T non_coding_transcript_exon_variant 0.24
rrl 1475266 n.1609T>C non_coding_transcript_exon_variant 0.25
rrl 1475267 n.1610G>A non_coding_transcript_exon_variant 0.25
rrl 1475275 n.1618C>T non_coding_transcript_exon_variant 0.26
rrl 1475276 n.1619T>C non_coding_transcript_exon_variant 0.26
rrl 1475291 n.1634A>C non_coding_transcript_exon_variant 0.29
rrl 1475297 n.1640C>T non_coding_transcript_exon_variant 0.24
rrl 1475315 n.1658A>T non_coding_transcript_exon_variant 0.31
rrl 1475355 n.1698C>T non_coding_transcript_exon_variant 0.25
rrl 1475366 n.1709G>A non_coding_transcript_exon_variant 0.2
rrl 1475369 n.1712G>T non_coding_transcript_exon_variant 0.24
rrl 1475402 n.1746delT non_coding_transcript_exon_variant 0.19
rrl 1475405 n.1748A>T non_coding_transcript_exon_variant 0.18
rrl 1475419 n.1762C>T non_coding_transcript_exon_variant 0.26
rrl 1475436 n.1779C>T non_coding_transcript_exon_variant 0.19
rrl 1475532 n.1875A>G non_coding_transcript_exon_variant 0.2
rrl 1475573 n.1916G>A non_coding_transcript_exon_variant 0.17
rrl 1475599 n.1942A>G non_coding_transcript_exon_variant 0.28
rrl 1475608 n.1951T>C non_coding_transcript_exon_variant 0.28
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 0.2
rrl 1475765 n.2111delG non_coding_transcript_exon_variant 0.23
rrl 1475883 n.2226A>G non_coding_transcript_exon_variant 0.21
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.24
rrl 1476033 n.2376T>C non_coding_transcript_exon_variant 0.23
rrl 1476035 n.2378G>A non_coding_transcript_exon_variant 0.17
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 0.23
rrl 1476089 n.2432T>C non_coding_transcript_exon_variant 0.22
rrl 1476095 n.2438C>G non_coding_transcript_exon_variant 0.23
rrl 1476105 n.2448G>A non_coding_transcript_exon_variant 0.16
rrl 1476106 n.2449A>T non_coding_transcript_exon_variant 0.2
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.24
rrl 1476117 n.2460G>C non_coding_transcript_exon_variant 0.24
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.28
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.29
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.21
rrl 1476256 n.2599A>C non_coding_transcript_exon_variant 0.22
rrl 1476583 n.2926G>A non_coding_transcript_exon_variant 0.3
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.29
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.28
rrl 1476689 n.3032A>T non_coding_transcript_exon_variant 0.24
rrl 1476690 n.3033C>T non_coding_transcript_exon_variant 0.24
rrl 1476693 n.3036G>A non_coding_transcript_exon_variant 0.24
rrl 1476695 n.3038T>A non_coding_transcript_exon_variant 0.24
rrl 1476726 n.3069A>G non_coding_transcript_exon_variant 0.2
inhA 1674368 p.Ala56Glu missense_variant 0.16
inhA 1674375 c.174C>G synonymous_variant 0.18
inhA 1674382 p.Leu61Ile missense_variant 0.19
inhA 1674428 p.Gly76Asp missense_variant 0.18
inhA 1674440 p.Glu80Ala missense_variant 0.18
inhA 1674443 p.Ala81Glu missense_variant 0.18
inhA 1674452 p.Ala84Glu missense_variant 0.18
inhA 1674465 c.264C>G synonymous_variant 0.23
inhA 1674471 c.270G>C synonymous_variant 0.27
inhA 1674480 c.279T>C synonymous_variant 0.27
inhA 1674486 c.285T>C synonymous_variant 0.29
inhA 1674489 c.288G>C synonymous_variant 0.27
inhA 1674534 c.333G>T synonymous_variant 0.31
inhA 1674537 c.336C>A synonymous_variant 0.31
inhA 1674542 p.Ala114Glu missense_variant 0.34
inhA 1674546 c.345T>C synonymous_variant 0.33
inhA 1674552 c.351C>G synonymous_variant 0.28
inhA 1674555 c.354G>A synonymous_variant 0.32
inhA 1674561 c.360C>T synonymous_variant 0.33
inhA 1674567 c.366C>T synonymous_variant 0.28
inhA 1674570 c.369G>C synonymous_variant 0.28
inhA 1674573 c.372G>C synonymous_variant 0.28
inhA 1674575 p.Tyr125Phe missense_variant 0.29
inhA 1674582 c.381T>C synonymous_variant 0.32
inhA 1674585 c.384T>C synonymous_variant 0.31
inhA 1674589 p.Met130Leu missense_variant 0.31
inhA 1674624 c.423A>T synonymous_variant 0.22
inhA 1674627 c.426T>C synonymous_variant 0.24
inhA 1674655 c.454_456delAGCinsTCG synonymous_variant 0.19
inhA 1674660 c.459G>C synonymous_variant 0.19
inhA 1674690 c.489C>G synonymous_variant 0.26
inhA 1674703 c.502T>C synonymous_variant 0.22
rpsA 1833589 c.48A>T synonymous_variant 0.25
rpsA 1833595 c.54T>G synonymous_variant 0.23
rpsA 1833604 c.63C>T synonymous_variant 0.19
rpsA 1833661 c.120A>G synonymous_variant 0.23
rpsA 1833667 c.126C>G synonymous_variant 0.31
rpsA 1833724 c.183C>G synonymous_variant 0.32
rpsA 1833727 c.186G>C synonymous_variant 0.32
rpsA 1833742 c.201A>G synonymous_variant 0.25
rpsA 1833745 c.204G>C synonymous_variant 0.32
rpsA 1833790 c.249T>C synonymous_variant 0.26
rpsA 1833793 c.252C>T synonymous_variant 0.34
rpsA 1833802 c.261A>G synonymous_variant 0.26
rpsA 1833811 c.270G>C synonymous_variant 0.33
rpsA 1833841 c.300C>G synonymous_variant 0.35
rpsA 1833856 c.315A>G synonymous_variant 0.36
rpsA 1833874 c.333T>C synonymous_variant 0.35
rpsA 1833940 c.399C>G synonymous_variant 0.29
rpsA 1833971 c.430C>T synonymous_variant 0.23
rpsA 1833979 c.438T>C synonymous_variant 0.23
rpsA 1834000 c.459G>C synonymous_variant 0.26
rpsA 1834021 c.480C>T synonymous_variant 0.25
rpsA 1834030 c.489C>G synonymous_variant 0.23
rpsA 1834099 c.558C>G synonymous_variant 0.18
rpsA 1834102 c.561T>C synonymous_variant 0.26
rpsA 1834105 c.564C>G synonymous_variant 0.18
rpsA 1834150 c.609G>C synonymous_variant 0.26
rpsA 1834153 c.612T>C synonymous_variant 0.26
rpsA 1834154 p.Asn205Gln missense_variant 0.26
rpsA 1834157 c.616T>C synonymous_variant 0.26
rpsA 1834162 c.621A>G synonymous_variant 0.26
rpsA 1834165 c.624A>G synonymous_variant 0.26
rpsA 1834177 c.636A>C synonymous_variant 0.27
rpsA 1834189 c.648G>C synonymous_variant 0.27
rpsA 1834192 c.651C>T synonymous_variant 0.18
rpsA 1834195 c.654G>C synonymous_variant 0.28
rpsA 1834210 c.669C>G synonymous_variant 0.24
rpsA 1834222 c.681T>C synonymous_variant 0.32
rpsA 1834234 c.693G>C synonymous_variant 0.23
rpsA 1834240 c.699T>C synonymous_variant 0.24
rpsA 1834249 c.708T>C synonymous_variant 0.33
rpsA 1834261 c.720A>G synonymous_variant 0.34
rpsA 1834264 c.723G>C synonymous_variant 0.33
rpsA 1834297 c.756C>G synonymous_variant 0.34
rpsA 1834303 c.762T>G synonymous_variant 0.32
rpsA 1834348 c.807T>C synonymous_variant 0.33
rpsA 1834366 c.825A>G synonymous_variant 0.35
rpsA 1834375 c.834G>C synonymous_variant 0.25
rpsA 1834378 c.837T>C synonymous_variant 0.25
rpsA 1834411 c.870T>A synonymous_variant 0.27
rpsA 1834417 c.876G>C synonymous_variant 0.33
rpsA 1834420 c.879C>T synonymous_variant 0.24
rpsA 1834423 c.882G>C synonymous_variant 0.33
rpsA 1834451 c.910T>C synonymous_variant 0.34
rpsA 1834459 c.918G>C synonymous_variant 0.25
rpsA 1834465 c.924T>A synonymous_variant 0.25
rpsA 1834468 c.927A>G synonymous_variant 0.33
rpsA 1834474 c.933C>G synonymous_variant 0.33
rpsA 1834489 c.948T>C synonymous_variant 0.33
rpsA 1834513 c.972C>G synonymous_variant 0.24
rpsA 1834528 c.987T>C synonymous_variant 0.32
rpsA 1834546 c.1005T>C synonymous_variant 0.33
rpsA 1834555 c.1014T>C synonymous_variant 0.34
rpsA 1834591 c.1050C>T synonymous_variant 0.22
rpsA 1834609 c.1068T>C synonymous_variant 0.31
rpsA 1834612 c.1071G>A synonymous_variant 0.19
rpsA 1834633 c.1092A>G synonymous_variant 0.31
rpsA 1834639 c.1098T>C synonymous_variant 0.31
rpsA 1834657 c.1116G>A synonymous_variant 0.18
rpsA 1834690 c.1149T>C synonymous_variant 0.27
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2155389 c.723C>G synonymous_variant 1.0
Rv1979c 2221746 c.1416_1418dupCCG disruptive_inframe_insertion 0.96
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2517989 c.-126T>G upstream_gene_variant 0.21
kasA 2518025 c.-90G>C upstream_gene_variant 0.24
kasA 2518031 c.-84G>C upstream_gene_variant 0.23
kasA 2518034 c.-81T>C upstream_gene_variant 0.23
kasA 2518035 c.-80C>G upstream_gene_variant 0.22
kasA 2518040 c.-75G>T upstream_gene_variant 0.2
kasA 2518041 c.-74T>C upstream_gene_variant 0.23
kasA 2518049 c.-66G>C upstream_gene_variant 0.19
kasA 2518053 c.-62_-60delATTinsCTG upstream_gene_variant 0.23
kasA 2518059 c.-56T>A upstream_gene_variant 0.18
kasA 2518073 c.-42T>G upstream_gene_variant 0.25
kasA 2518088 c.-27T>C upstream_gene_variant 0.2
kasA 2518089 c.-26C>A upstream_gene_variant 0.2
kasA 2518100 c.-15T>G upstream_gene_variant 0.19
kasA 2518103 c.-12G>A upstream_gene_variant 0.19
kasA 2518106 c.-9C>G upstream_gene_variant 0.19
kasA 2518109 c.-6G>C upstream_gene_variant 0.19
kasA 2518110 c.-5T>A upstream_gene_variant 0.19
kasA 2518121 p.Gln3Lys missense_variant 0.2
kasA 2518132 c.18C>T synonymous_variant 0.2
kasA 2518146 p.Phe11Tyr missense_variant 0.21
kasA 2518162 c.48G>A synonymous_variant 0.2
kasA 2518174 c.60A>G synonymous_variant 0.19
kasA 2518190 p.Ser26Ala missense_variant 0.19
kasA 2518220 c.106C>T synonymous_variant 0.18
kasA 2518334 c.220_222delCGAinsAGG synonymous_variant 0.16
kasA 2518348 c.234A>T synonymous_variant 0.17
kasA 2518385 p.Gly91Cys missense_variant 0.17
kasA 2518390 c.276A>T synonymous_variant 0.2
kasA 2518403 p.Ser97Thr missense_variant 0.19
kasA 2518417 c.303G>C synonymous_variant 0.19
kasA 2518439 p.Ala109Thr missense_variant 0.16
kasA 2518444 c.330T>C synonymous_variant 0.19
kasA 2518447 c.333T>G synonymous_variant 0.21
kasA 2518462 c.348A>C synonymous_variant 0.2
kasA 2518475 c.361A>C synonymous_variant 0.19
kasA 2518504 c.390T>C synonymous_variant 0.2
kasA 2518506 p.Ala131Glu missense_variant 0.2
kasA 2518519 c.405G>C synonymous_variant 0.22
kasA 2518528 c.414C>G synonymous_variant 0.25
kasA 2518534 c.420G>C synonymous_variant 0.23
kasA 2518561 c.447T>C synonymous_variant 0.31
kasA 2518567 c.453G>T synonymous_variant 0.23
kasA 2518574 p.Ile154Val missense_variant 0.29
kasA 2518588 c.474T>C synonymous_variant 0.25
kasA 2518591 c.477G>C synonymous_variant 0.2
kasA 2518627 c.513T>C synonymous_variant 0.3
kasA 2518636 c.522C>T synonymous_variant 0.31
kasA 2518642 c.528A>G synonymous_variant 0.33
kasA 2518699 c.585C>T synonymous_variant 0.29
kasA 2518708 c.594C>G synonymous_variant 0.28
kasA 2518711 c.597A>G synonymous_variant 0.34
kasA 2518714 c.600A>C synonymous_variant 0.35
kasA 2518747 c.633C>G synonymous_variant 0.39
kasA 2518756 c.642G>C synonymous_variant 0.31
kasA 2518783 c.669T>C synonymous_variant 0.38
kasA 2518789 c.675G>T synonymous_variant 0.3
kasA 2518795 c.681C>G synonymous_variant 0.35
kasA 2518798 c.684G>T synonymous_variant 0.26
kasA 2518825 c.711T>C synonymous_variant 0.34
kasA 2518843 c.729T>G synonymous_variant 0.28
kasA 2518864 c.750G>C synonymous_variant 0.32
kasA 2518867 c.753G>A synonymous_variant 0.32
kasA 2518879 c.765A>G synonymous_variant 0.29
kasA 2518885 c.771T>C synonymous_variant 0.24
kasA 2518893 p.Lys260Thr missense_variant 0.22
kasA 2518898 c.784T>C synonymous_variant 0.24
kasA 2518906 c.792A>G synonymous_variant 0.24
kasA 2518910 p.Leu266Met missense_variant 0.22
kasA 2518915 c.801T>C synonymous_variant 0.19
kasA 2518921 c.807T>C synonymous_variant 0.2
folC 2746353 p.Ala416Ser missense_variant 0.18
folC 2746451 p.Gly383Ala missense_variant 0.18
folC 2746525 c.1074G>T synonymous_variant 0.16
pepQ 2859765 c.654G>C synonymous_variant 0.21
pepQ 2859778 p.Val214Asp missense_variant 0.19
pepQ 2859801 c.618G>C synonymous_variant 0.22
pepQ 2859852 c.567A>G synonymous_variant 0.19
pepQ 2859857 p.Val188Met missense_variant 0.19
pepQ 2859870 c.549T>C synonymous_variant 0.19
pepQ 2859873 c.546T>C synonymous_variant 0.19
Rv2752c 3065430 c.762A>T synonymous_variant 0.18
Rv2752c 3065463 c.729T>C synonymous_variant 0.23
Rv2752c 3065487 c.705T>G synonymous_variant 0.22
Rv2752c 3065490 c.702A>C synonymous_variant 0.2
Rv2752c 3065493 c.699G>C synonymous_variant 0.21
Rv2752c 3065496 c.696G>C synonymous_variant 0.21
Rv2752c 3065499 c.693A>C synonymous_variant 0.21
Rv2752c 3065508 c.684T>C synonymous_variant 0.21
Rv2752c 3065517 c.675C>G synonymous_variant 0.21
Rv2752c 3065532 c.660A>G synonymous_variant 0.23
Rv2752c 3065553 c.639A>G synonymous_variant 0.22
Rv2752c 3065577 c.615C>T synonymous_variant 0.2
Rv2752c 3065580 c.612G>C synonymous_variant 0.19
Rv2752c 3065595 p.Leu199Phe missense_variant 0.18
thyX 3067474 p.Pro158Ala missense_variant 0.97
thyX 3067721 c.225T>C synonymous_variant 0.21
thyX 3067727 c.219A>C synonymous_variant 0.19
thyX 3067739 c.207T>C synonymous_variant 0.21
thyX 3067765 p.Leu61Ile missense_variant 0.21
thyX 3067781 c.165C>G synonymous_variant 0.21
thyX 3067793 c.153T>C synonymous_variant 0.21
thyX 3067802 c.144C>G synonymous_variant 0.2
thyA 3073977 c.495A>G synonymous_variant 0.2
thyA 3073989 c.483T>C synonymous_variant 0.2
thyA 3074004 c.468T>C synonymous_variant 0.19
thyA 3074031 c.441T>C synonymous_variant 0.22
thyA 3074037 c.435C>G synonymous_variant 0.22
thyA 3074056 p.Glu139Pro missense_variant 0.23
thyA 3074097 c.375C>G synonymous_variant 0.21
thyA 3074100 c.372T>C synonymous_variant 0.21
thyA 3074106 c.366T>C synonymous_variant 0.22
thyA 3074120 c.352T>C synonymous_variant 0.2
thyA 3074147 p.Ile109Val missense_variant 0.19
thyA 3074154 c.318T>C synonymous_variant 0.18
thyA 3074165 p.Ala103Thr missense_variant 0.18
thyA 3074175 c.297A>G synonymous_variant 0.18
Rv3083 3448567 p.His22Asp missense_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
Rv3236c 3612571 c.546C>T synonymous_variant 1.0
fbiA 3640930 p.Glu130Lys missense_variant 0.18
fbiB 3640965 c.-570C>G upstream_gene_variant 0.19
fbiB 3640966 c.-569T>C upstream_gene_variant 0.19
fbiB 3640989 c.-546T>C upstream_gene_variant 0.19
fbiB 3640995 c.-540A>G upstream_gene_variant 0.21
fbiB 3640998 c.-537C>G upstream_gene_variant 0.2
fbiB 3641001 c.-534T>C upstream_gene_variant 0.21
fbiB 3641004 c.-531A>G upstream_gene_variant 0.21
fbiB 3641016 c.-519C>T upstream_gene_variant 0.23
fbiA 3641021 p.Val160Ala missense_variant 0.19
fbiA 3641028 p.Glu162Asp missense_variant 0.2
rpoA 3877613 p.Ile299Val missense_variant 0.19
rpoA 3877656 c.852T>C synonymous_variant 0.21
rpoA 3877668 c.840A>G synonymous_variant 0.2
rpoA 3877677 p.Ala277Thr missense_variant 0.19
rpoA 3877680 c.828G>C synonymous_variant 0.19
rpoA 3877686 c.822A>G synonymous_variant 0.2
rpoA 3877692 c.816G>C synonymous_variant 0.2
rpoA 3877704 c.804G>C synonymous_variant 0.21
rpoA 3877743 c.765T>C synonymous_variant 0.17
rpoA 3877764 c.744C>G synonymous_variant 0.24
rpoA 3877770 c.738A>G synonymous_variant 0.24
rpoA 3877776 c.732T>C synonymous_variant 0.24
rpoA 3877782 c.726T>C synonymous_variant 0.23
rpoA 3877818 c.690A>G synonymous_variant 0.23
rpoA 3877857 c.651G>A synonymous_variant 0.24
rpoA 3877900 p.Ser203Thr missense_variant 0.21
rpoA 3877905 c.603A>G synonymous_variant 0.27
rpoA 3877908 p.Asn200Ser missense_variant 0.27
rpoA 3877920 c.588G>C synonymous_variant 0.31
rpoA 3877962 c.546G>T synonymous_variant 0.31
rpoA 3877968 c.540C>G synonymous_variant 0.31
rpoA 3877986 c.522G>C synonymous_variant 0.31
rpoA 3877989 c.519A>G synonymous_variant 0.32
rpoA 3878001 c.507A>G synonymous_variant 0.32
rpoA 3878019 c.489A>G synonymous_variant 0.24
rpoA 3878022 c.486T>C synonymous_variant 0.35
rpoA 3878028 c.480G>C synonymous_variant 0.33
rpoA 3878031 c.477T>C synonymous_variant 0.32
rpoA 3878040 c.468T>C synonymous_variant 0.24
rpoA 3878046 c.462T>G synonymous_variant 0.28
rpoA 3878055 c.453A>G synonymous_variant 0.34
rpoA 3878061 c.447G>C synonymous_variant 0.33
rpoA 3878067 c.441C>G synonymous_variant 0.32
rpoA 3878070 c.438T>C synonymous_variant 0.32
rpoA 3878082 c.426T>C synonymous_variant 0.36
rpoA 3878103 c.405A>G synonymous_variant 0.32
rpoA 3878106 c.402G>C synonymous_variant 0.32
rpoA 3878118 c.390T>C synonymous_variant 0.31
rpoA 3878130 c.378C>G synonymous_variant 0.3
rpoA 3878143 p.Gly122Ala missense_variant 0.27
rpoA 3878157 c.351C>G synonymous_variant 0.28
rpoA 3878160 c.348C>G synonymous_variant 0.29
rpoA 3878184 c.324C>T synonymous_variant 0.29
rpoA 3878187 c.321C>G synonymous_variant 0.37
rpoA 3878193 c.315T>C synonymous_variant 0.35
rpoA 3878199 c.309T>C synonymous_variant 0.27
rpoA 3878205 c.303T>C synonymous_variant 0.37
rpoA 3878217 c.291A>G synonymous_variant 0.38
rpoA 3878256 c.252G>C synonymous_variant 0.27
rpoA 3878264 p.Ser82Gly missense_variant 0.29
rpoA 3878271 c.237T>C synonymous_variant 0.41
rpoA 3878283 p.Glu75Asp missense_variant 0.34
rpoA 3878292 c.216T>C synonymous_variant 0.39
rpoA 3878298 c.210A>G synonymous_variant 0.38
rpoA 3878301 c.207C>G synonymous_variant 0.28
rpoA 3878304 c.204G>C synonymous_variant 0.31
rpoA 3878313 c.195G>C synonymous_variant 0.37
rpoA 3878322 c.186A>G synonymous_variant 0.36
rpoA 3878331 c.177A>G synonymous_variant 0.36
rpoA 3878334 c.174T>C synonymous_variant 0.36
rpoA 3878337 c.171T>C synonymous_variant 0.36
rpoA 3878364 c.144A>C synonymous_variant 0.31
rpoA 3878370 c.138T>C synonymous_variant 0.29
rpoA 3878385 c.123C>G synonymous_variant 0.36
rpoA 3878391 c.117T>G synonymous_variant 0.3
rpoA 3878406 c.102G>C synonymous_variant 0.27
rpoA 3878415 c.93C>G synonymous_variant 0.26
rpoA 3878424 c.84G>C synonymous_variant 0.25
rpoA 3878432 c.76C>T synonymous_variant 0.24
rpoA 3878442 c.66G>C synonymous_variant 0.35
rpoA 3878454 c.54A>G synonymous_variant 0.26
rpoA 3878458 p.Asn17Thr missense_variant 0.23
rpoA 3878472 p.Asp12Glu missense_variant 0.34
rpoA 3878484 c.24C>A synonymous_variant 0.24
rpoA 3878490 c.18C>A synonymous_variant 0.26
rpoA 3878695 c.-188C>G upstream_gene_variant 0.21
rpoA 3878698 c.-191A>G upstream_gene_variant 0.3
rpoA 3878701 c.-194C>G upstream_gene_variant 0.3
clpC1 4038398 c.2307G>T synonymous_variant 0.16
clpC1 4038419 c.2286T>C synonymous_variant 0.21
clpC1 4038433 c.2272C>T synonymous_variant 0.22
clpC1 4038444 p.Ala754Lys missense_variant 0.19
clpC1 4038446 c.2259T>C synonymous_variant 0.2
clpC1 4038456 p.Val750Glu missense_variant 0.21
clpC1 4038461 c.2244G>T synonymous_variant 0.16
clpC1 4038485 c.2220C>A synonymous_variant 0.17
clpC1 4038499 p.Ser736Gly missense_variant 0.19
clpC1 4038506 c.2199G>C synonymous_variant 0.19
clpC1 4038530 p.Glu725Asp missense_variant 0.26
clpC1 4038533 p.Arg724Lys missense_variant 0.25
clpC1 4038596 c.2109A>G synonymous_variant 0.29
clpC1 4038599 c.2106G>A synonymous_variant 0.2
clpC1 4038623 c.2082A>G synonymous_variant 0.27
clpC1 4038640 p.Asp689Asn missense_variant 0.27
clpC1 4038653 c.2052C>T synonymous_variant 0.24
clpC1 4038658 p.Lys683Gln missense_variant 0.23
clpC1 4038661 p.Ser682Thr missense_variant 0.24
clpC1 4038662 c.2043T>C synonymous_variant 0.24
clpC1 4038671 c.2034T>C synonymous_variant 0.25
clpC1 4038683 c.2022T>G synonymous_variant 0.18
clpC1 4038695 c.2010C>G synonymous_variant 0.27
clpC1 4038701 c.2004G>C synonymous_variant 0.26
clpC1 4038704 c.2001T>C synonymous_variant 0.26
clpC1 4038707 c.1998C>G synonymous_variant 0.26
clpC1 4038710 c.1995G>C synonymous_variant 0.26
clpC1 4038713 c.1992T>C synonymous_variant 0.27
clpC1 4038755 c.1950G>C synonymous_variant 0.18
clpC1 4038773 c.1932T>C synonymous_variant 0.27
clpC1 4038782 c.1923G>C synonymous_variant 0.26
clpC1 4038790 c.1915C>T synonymous_variant 0.28
clpC1 4038812 c.1893T>C synonymous_variant 0.24
clpC1 4038878 c.1827A>G synonymous_variant 0.26
clpC1 4038890 c.1815G>A synonymous_variant 0.18
clpC1 4038896 c.1809C>G synonymous_variant 0.18
clpC1 4038908 c.1797C>G synonymous_variant 0.28
clpC1 4038914 c.1791G>C synonymous_variant 0.28
clpC1 4038923 c.1782A>G synonymous_variant 0.28
clpC1 4038953 c.1752A>G synonymous_variant 0.26
clpC1 4038956 c.1749T>C synonymous_variant 0.18
clpC1 4038965 c.1740T>C synonymous_variant 0.25
clpC1 4038971 c.1734T>C synonymous_variant 0.24
clpC1 4038974 c.1731T>C synonymous_variant 0.24
clpC1 4038989 c.1716T>C synonymous_variant 0.28
clpC1 4038997 c.1708T>C synonymous_variant 0.28
clpC1 4039022 c.1683A>G synonymous_variant 0.28
clpC1 4039073 c.1632C>G synonymous_variant 0.22
clpC1 4039085 c.1620A>G synonymous_variant 0.22
clpC1 4039090 c.1615C>T synonymous_variant 0.22
clpC1 4039097 c.1608G>C synonymous_variant 0.22
clpC1 4039103 c.1602T>C synonymous_variant 0.32
clpC1 4039106 c.1599G>C synonymous_variant 0.32
clpC1 4039112 c.1593C>G synonymous_variant 0.32
clpC1 4039121 c.1584T>G synonymous_variant 0.26
clpC1 4039133 c.1572C>G synonymous_variant 0.23
clpC1 4039142 c.1563A>G synonymous_variant 0.32
clpC1 4039145 c.1560G>C synonymous_variant 0.33
clpC1 4039169 p.Glu512Asp missense_variant 0.26
clpC1 4039172 c.1533A>G synonymous_variant 0.31
clpC1 4039183 c.1522T>C synonymous_variant 0.31
clpC1 4039187 c.1518G>C synonymous_variant 0.24
clpC1 4039208 c.1497C>G synonymous_variant 0.28
clpC1 4039226 c.1479T>C synonymous_variant 0.28
clpC1 4039274 c.1431G>C synonymous_variant 0.29
clpC1 4039286 c.1419T>C synonymous_variant 0.28
clpC1 4039295 c.1410A>G synonymous_variant 0.19
clpC1 4039319 c.1386T>C synonymous_variant 0.25
clpC1 4039322 c.1383T>G synonymous_variant 0.18
clpC1 4039328 c.1377A>C synonymous_variant 0.25
clpC1 4039331 c.1374C>T synonymous_variant 0.18
clpC1 4039337 c.1368A>C synonymous_variant 0.18
clpC1 4039364 c.1341C>G synonymous_variant 0.25
clpC1 4039391 c.1314T>G synonymous_variant 0.22
clpC1 4039409 c.1296T>C synonymous_variant 0.21
clpC1 4039412 c.1293T>G synonymous_variant 0.22
clpC1 4039430 c.1275T>C synonymous_variant 0.23
clpC1 4039442 c.1263A>G synonymous_variant 0.22
clpC1 4039454 c.1251A>G synonymous_variant 0.24
clpC1 4039463 c.1242C>G synonymous_variant 0.24
clpC1 4039469 c.1236T>C synonymous_variant 0.24
clpC1 4039481 c.1224T>C synonymous_variant 0.24
clpC1 4039484 c.1221T>C synonymous_variant 0.23
clpC1 4039556 c.1149G>C synonymous_variant 0.25
clpC1 4039559 c.1146C>G synonymous_variant 0.25
clpC1 4039574 c.1131G>C synonymous_variant 0.22
clpC1 4039577 c.1128T>C synonymous_variant 0.22
clpC1 4039616 c.1089G>C synonymous_variant 0.24
clpC1 4039673 c.1032G>C synonymous_variant 0.19
clpC1 4039724 c.981A>G synonymous_variant 0.23
clpC1 4039751 c.954A>G synonymous_variant 0.22
clpC1 4039757 c.948A>G synonymous_variant 0.22
clpC1 4039760 c.945T>C synonymous_variant 0.21
clpC1 4039766 c.939T>C synonymous_variant 0.23
clpC1 4039769 c.936C>G synonymous_variant 0.23
clpC1 4039778 c.927A>G synonymous_variant 0.24
clpC1 4039790 c.915C>G synonymous_variant 0.25
clpC1 4039817 c.888A>T synonymous_variant 0.19
clpC1 4039820 c.885T>C synonymous_variant 0.19
clpC1 4039831 c.874T>C synonymous_variant 0.24
clpC1 4039850 c.855T>C synonymous_variant 0.24
clpC1 4039865 c.840T>C synonymous_variant 0.26
clpC1 4039898 c.807C>G synonymous_variant 0.28
clpC1 4039904 c.801A>G synonymous_variant 0.3
clpC1 4039910 c.795C>T synonymous_variant 0.23
clpC1 4039931 c.774T>C synonymous_variant 0.3
clpC1 4039937 c.768G>C synonymous_variant 0.22
clpC1 4039942 c.763C>T synonymous_variant 0.23
clpC1 4039946 c.759A>T synonymous_variant 0.31
clpC1 4039951 c.754C>T synonymous_variant 0.22
clpC1 4039979 c.726C>G synonymous_variant 0.27
clpC1 4039988 c.717C>G synonymous_variant 0.2
clpC1 4039991 c.714G>C synonymous_variant 0.22
clpC1 4039996 p.Glu237Gln missense_variant 0.28
clpC1 4040021 c.684A>C synonymous_variant 0.26
clpC1 4040024 c.681A>G synonymous_variant 0.26
clpC1 4040033 c.672G>C synonymous_variant 0.25
clpC1 4040087 c.618G>C synonymous_variant 0.18
clpC1 4040090 c.613_615delTCTinsAGC synonymous_variant 0.23
clpC1 4040093 c.612C>G synonymous_variant 0.23
clpC1 4040096 c.609G>C synonymous_variant 0.19
clpC1 4040105 c.600C>G synonymous_variant 0.25
clpC1 4040147 c.558A>G synonymous_variant 0.29
clpC1 4040153 c.552A>G synonymous_variant 0.2
clpC1 4040162 c.543G>C synonymous_variant 0.22
clpC1 4040171 c.534C>G synonymous_variant 0.27
clpC1 4040200 c.505T>C synonymous_variant 0.22
clpC1 4040201 c.504C>G synonymous_variant 0.23
clpC1 4040213 c.490_492delTCTinsAGC synonymous_variant 0.23
clpC1 4040225 c.480A>C synonymous_variant 0.24
clpC1 4040237 c.468C>T synonymous_variant 0.23
clpC1 4040249 c.456A>G synonymous_variant 0.24
clpC1 4040252 c.453C>G synonymous_variant 0.24
clpC1 4040267 c.438A>G synonymous_variant 0.22
clpC1 4040273 c.432T>C synonymous_variant 0.21
clpC1 4040277 c.427_428delTCinsAG synonymous_variant 0.2
clpC1 4040279 c.426C>G synonymous_variant 0.21
clpC1 4040330 c.375C>G synonymous_variant 0.19
clpC1 4040363 c.342A>C synonymous_variant 0.19
clpC1 4040528 c.177G>T synonymous_variant 0.16
embC 4240671 p.Thr270Ile missense_variant 0.17
embC 4240726 c.864G>C synonymous_variant 0.2
embC 4240831 c.969T>G synonymous_variant 0.19
embC 4240852 c.990G>A synonymous_variant 0.17
embC 4240873 c.1011C>G synonymous_variant 0.22
embC 4240880 p.Ala340Thr missense_variant 0.21
embC 4240885 c.1023T>C synonymous_variant 0.19
embC 4240897 c.1035C>G synonymous_variant 0.21
embC 4240900 c.1038A>G synonymous_variant 0.19
embC 4240921 c.1059C>G synonymous_variant 0.19
embC 4240924 c.1062C>G synonymous_variant 0.2
embC 4240936 c.1074A>G synonymous_variant 0.22
embC 4240954 p.Ile364Met missense_variant 0.23
embC 4240966 c.1104G>C synonymous_variant 0.23
embC 4240979 p.Thr373Pro missense_variant 0.22
embC 4240983 p.Ser374Asn missense_variant 0.23
embC 4240990 c.1128A>C synonymous_variant 0.23
embC 4241002 c.1140G>C synonymous_variant 0.27
embC 4241017 c.1155T>C synonymous_variant 0.24
embC 4241050 c.1188T>G synonymous_variant 0.23
embC 4241104 c.1242G>A synonymous_variant 0.23
embC 4241107 c.1245G>C synonymous_variant 0.23
embC 4241158 c.1296T>C synonymous_variant 0.22
embC 4241161 c.1299C>G synonymous_variant 0.2
embC 4241162 c.1300T>C synonymous_variant 0.2
embC 4241614 c.1752A>C synonymous_variant 0.19
embC 4241626 c.1764T>C synonymous_variant 0.19
embA 4242550 c.-683C>G upstream_gene_variant 1.0
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4244823 p.Val531Met missense_variant 0.17
embA 4244829 p.Phe533Val missense_variant 0.18
embA 4244846 c.1614C>G synonymous_variant 0.24
embA 4244850 p.Arg540Gly missense_variant 0.24
embA 4244856 p.Ala542Pro missense_variant 0.23
embA 4244873 c.1641C>G synonymous_variant 0.23
embA 4244879 c.1647C>G synonymous_variant 0.22
embA 4244885 c.1653A>G synonymous_variant 0.24
embA 4244886 c.1654C>T synonymous_variant 0.22
embA 4244897 c.1665T>C synonymous_variant 0.27
embA 4244900 c.1668G>C synonymous_variant 0.28
embA 4244921 c.1689C>G synonymous_variant 0.3
embA 4244930 c.1698G>C synonymous_variant 0.24
embA 4244933 c.1701A>G synonymous_variant 0.28
embA 4244936 c.1704C>G synonymous_variant 0.24
embA 4244960 c.1728A>G synonymous_variant 0.26
embA 4244966 c.1734C>G synonymous_variant 0.21
embA 4244969 c.1737G>C synonymous_variant 0.2
embA 4244970 c.1738C>T synonymous_variant 0.2
embA 4244976 p.Gly582Ser missense_variant 0.2
embA 4244980 p.Val583Ala missense_variant 0.25
embA 4244982 c.1750T>C synonymous_variant 0.25
embA 4244993 c.1761C>G synonymous_variant 0.25
embA 4245003 p.Thr591Ala missense_variant 0.32
embA 4245008 c.1776T>C synonymous_variant 0.28
embA 4245014 c.1782C>G synonymous_variant 0.32
embA 4245020 c.1788T>C synonymous_variant 0.29
embA 4245023 c.1791A>G synonymous_variant 0.28
embA 4245026 c.1794T>C synonymous_variant 0.28
embA 4245029 c.1797T>C synonymous_variant 0.29
embA 4245032 c.1800A>C synonymous_variant 0.29
embA 4245060 c.1828T>C synonymous_variant 0.28
embA 4245083 c.1851A>G synonymous_variant 0.24
embA 4245089 c.1857G>C synonymous_variant 0.23
embA 4245093 p.Ile621Val missense_variant 0.22
embA 4245101 c.1869G>C synonymous_variant 0.22
embA 4245149 c.1917C>G synonymous_variant 0.19
embA 4245182 c.1950T>C synonymous_variant 0.18
embA 4245745 p.Pro838Leu missense_variant 0.85
embB 4248064 c.1551G>C synonymous_variant 0.2
embB 4248070 c.1557T>C synonymous_variant 0.21
embB 4248085 c.1572T>C synonymous_variant 0.23
embB 4248097 c.1584C>G synonymous_variant 0.25
embB 4248106 c.1593C>G synonymous_variant 0.19
embB 4248130 c.1617G>C synonymous_variant 0.21
embB 4248142 c.1629T>C synonymous_variant 0.21
embB 4248157 c.1644A>G synonymous_variant 0.24
embB 4248172 c.1659G>C synonymous_variant 0.24
embB 4248206 p.Ser565Gly missense_variant 0.27
embB 4248217 c.1704C>G synonymous_variant 0.21
embB 4248220 c.1707A>C synonymous_variant 0.22
embB 4248232 c.1719G>T synonymous_variant 0.23
embB 4248235 c.1722G>T synonymous_variant 0.23
embB 4248256 c.1743C>G synonymous_variant 0.24
embB 4248266 c.1753C>T synonymous_variant 0.22
embB 4248277 c.1764G>C synonymous_variant 0.27
embB 4248316 c.1803C>G synonymous_variant 0.19
embB 4248319 c.1806A>G synonymous_variant 0.19
embB 4249462 c.2949G>T synonymous_variant 0.16
embB 4249465 c.2952G>A synonymous_variant 0.16
embB 4249505 p.Gln998Lys missense_variant 0.17
embB 4249525 c.3012T>C synonymous_variant 0.19
embB 4249529 p.Ile1006Val missense_variant 0.19
embB 4249532 p.Ala1007Thr missense_variant 0.2
embB 4249537 c.3024A>G synonymous_variant 0.2
embB 4249568 p.Ser1019Asn missense_variant 0.19
embB 4249573 c.3060T>C synonymous_variant 0.19
embB 4249581 p.Leu1023Gln missense_variant 0.2
embB 4249607 p.Thr1032Val missense_variant 0.2
embB 4249624 c.3111C>G synonymous_variant 0.19
embB 4249627 c.3114G>C synonymous_variant 0.19
aftB 4267272 p.Lys522Arg missense_variant 0.96
ethR 4326739 c.-810G>C upstream_gene_variant 1.0
ethA 4328004 c.-531C>T upstream_gene_variant 0.99
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
fbiC 1305494 c.2565_*56delCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN frameshift_variant&stop_lost&splice_region_variant 1.0