Rv0006 - c.1716C>G
Drug resistance types
17 Sensitive
10 RR-TB
61 HR-TB
19 MDR-TB
3 Pre-XDR-TB
2 XDR-TB
125 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 8 |
| lineage4.9 | 55 |
| lineage4 | 4 |
| lineage3 | 23 |
| lineage4.9;lineage6.3 | 4 |
| lineage4.6.1.1 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 10 |
| lineage2.1 | 3 |
| lineage2.1;lineage4.9 | 12 |
| La1.7;M.canetti;lineage4.9 | 3 |
| La1.7;lineage4.9 | 3 |
| lineage4.3.2 | 1 |
| lineage4.9;lineage7 | 2 |
| lineage4.3.3 | 4 |
| lineage4.1.2.1 | 9 |
| lineage4.1.3 | 2 |
| lineage4.1 | 1 |
| La3;lineage4.8 | 1 |
| lineage3;lineage4 | 1 |
| lineage4.6.2.2 | 5 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.2;lineage4.9 | 2 |
| 13 | |
| La1.2.BCG | 1 |
| lineage2.2 | 5 |
| lineage4.1.1.2 | 1 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| lineage6.3.1 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| lineage4.4.1.1 | 2 |
| La3;lineage1.1.2 | 1 |
| lineage4.1.2 | 1 |
| lineage1.2.1.1 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| La1.7;lineage4.9;lineage7 | 3 |
| La2;lineage4.9 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 4 |
| lineage4.3.2.1 | 1 |
| lineage5.2 | 2 |
| lineage4.2.1 | 1 |
| M.canetti;lineage4.9 | 2 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| La3;lineage2 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.2 | 2 |
| lineage4.6.3;lineage4.9 | 1 |
| La3;lineage4.9 | 3 |
| La3;lineage2.1;lineage6.3 | 1 |
| lineage2.1;lineage6.3 | 2 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La2;lineage2.2 | 1 |
| lineage2.2.2 | 1 |
| lineage3.1.2.1 | 1 |
| lineage2.2.1;lineage6.3 | 1 |
| La1.2;La1.8.1 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| La1;lineage4.9 | 1 |
| lineage1.1.3.2 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| La1;lineage4.1.2 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| La1.7;lineage4.2 | 1 |
| lineage1.1.3.1 | 1 |
| lineage3.1.3 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage4.8 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 237 |
Geographic prevalence
Country level data for this variant is available for 3 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1181020 | Other | lineage2.2.1 | None | SRR3675214 | Other | lineage4.9 | None | ERR3283044 | Other | lineage4 | None | ERR990545 | RR-TB | lineage3 | None | SRR6045548 | Other | lineage4.9 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR12142341 | HR-TB | lineage2.1 | None | SRR5341333 | HR-TB | lineage2.1;lineage4.9 | None | ERR2027263 | Other | lineage4 | None | SRR6046133 | HR-TB | lineage4.9 | None | ERR9786081 | Other | lineage3 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | SRR6789621 | Other | lineage4.9 | None | SRR23961558 | RR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675248 | Other | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR3806589 | Other | lineage3 | None | ERR3273109 | HR-TB | lineage4 | None | ERR3276142 | Sensitive | lineage3 | nl | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR3445502 | HR-TB | lineage4.9;lineage7 | None | SRR3675221 | Other | lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | SRR1165699 | Other | lineage4.9 | None | SRR21732980 | Other | lineage4.3.3 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | SRR1181289 | RR-TB | lineage2.2.1 | None | SRR10809074 | HR-TB | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786079 | Other | lineage3 | None | SRR5341293 | Sensitive | lineage4.9 | None | ERR9786440 | Other | lineage4.1 | None | ERR12015083 | Other | La3;lineage4.8 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR502535 | Other | lineage3;lineage4 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | ERR4769452 | Other | lineage4.9 | None | ERR9786711 | Other | lineage4.6.2.2 | None | ERR294266 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR6358991 | HR-TB | lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | None | ERR3806450 | Sensitive | lineage4.3.3 | None | ERR9786601 | Other | lineage4.1.2.1 | None | SRR3675508 | MDR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR736863 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR9786645 | Other | lineage4.6.2.2 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | ERR736856 | HR-TB | lineage4.9 | None | ERR9786642 | Other | lineage4.1.2.1 | None | SRR3675572 | Other | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR9786604 | Other | None | ERR234659 | HR-TB | None | SRR3675236 | Other | None | ERR4797474 | Other | lineage4.9 | None | ERR4798262 | HR-TB | La1.2.BCG | None | ERR3803773 | Other | lineage3 | None | ERR4800341 | HR-TB | lineage3 | None | ERR4810624 | MDR-TB | lineage2.2 | None | ERR4818252 | HR-TB | lineage4.1.1.2 | None | ERR9786084 | Sensitive | lineage3 | None | SRR20632814 | Sensitive | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR6046046 | Other | lineage4.9 | None | ERR4798099 | HR-TB | lineage4.9 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR10808482 | Other | lineage4.4.1.1 | None | SRR1183049 | RR-TB | lineage2.2 | None | SRR6045217 | Other | lineage4.9 | None | ERR3797069 | Other | lineage4.9 | None | ERR9117721 | HR-TB | La3;lineage1.1.2 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4814734 | Other | lineage1.2.1.1 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR6044942 | HR-TB | lineage4.9 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR6045555 | Other | lineage4.9 | None | SRR5341313 | Other | La1.7;lineage4.9;lineage7 | None | ERR9119669 | MDR-TB | lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | SRR6045526 | Other | lineage4.9 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR4769521 | RR-TB | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | ERR3803771 | Other | lineage3 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR3806606 | Other | lineage3 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR9786080 | Other | lineage3 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR4799513 | HR-TB | lineage2.2 | None | SRR3675235 | HR-TB | lineage4.9 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | SRR5341432 | Other | La1.7;lineage4.9;lineage7 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR3283042 | HR-TB | lineage4.9 | None | ERR3803782 | Other | lineage3 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR9786082 | Other | lineage3 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR9786694 | Other | lineage4.1.2.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | SRR20969677 | HR-TB | La3;lineage2 | None | ERR2514707 | Sensitive | lineage3 | gb | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | SRR1180137 | RR-TB | lineage2.2.1 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6045892 | Sensitive | lineage4.9 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | SRR6046485 | Other | lineage4.9 | None | ERR9786864 | Sensitive | lineage4.3.3 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR9786682 | Other | lineage4.1.2.1 | None | SRR26111991 | Sensitive | lineage3 | None | SRR6045053 | Other | lineage4 | None | SRR7496509 | Other | None | ERR9786671 | Other | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | ERR11252612 | Other | La3;lineage4.9 | None | ERR2514692 | Other | None | ERR4407463 | HR-TB | None | ERR9787197 | Other | None | SRR28119805 | Other | lineage4.9 | None | ERR6866807 | RR-TB | lineage4.9 | None | ERR9786085 | Other | lineage3 | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | SRR5341373 | Other | lineage4.9 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | SRR3675275 | Other | lineage4.9 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR6046295 | MDR-TB | lineage4.2;lineage4.9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | SRR18910194 | HR-TB | lineage2.2.2 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR6046878 | Other | lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR20969708 | HR-TB | lineage2.2 | None | ERR6866639 | HR-TB | lineage4.9 | None | ERR6866410 | HR-TB | lineage4.9 | None | ERR4800102 | Sensitive | lineage3.1.2.1 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR15368973 | Other | lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | SRR28119811 | Other | lineage2.2.1;lineage6.3 | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR7240033 | Other | La1.2;La1.8.1 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9786141 | Sensitive | lineage4.3.3 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR3797043 | Sensitive | lineage4.9 | None | SRR7496472 | Other | lineage4.9 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR3801503 | Other | lineage4.6.2.2 | None | SRR5341453 | Other | lineage4.9 | None | ERR9786089 | Other | lineage3 | None | ERR7821126 | Other | lineage1.1.3.2 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | ERR9119500 | MDR-TB | lineage5.2 | None | SRR21689812 | Sensitive | lineage3 | None | ERR9786087 | Other | lineage3 | None | SRR9970978 | Other | La1;lineage4.1.2 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | ERR4797184 | HR-TB | lineage4.9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | ERR3283018 | HR-TB | lineage4.9 | None | SRR6045233 | Other | M.canetti;lineage4.9 | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR9786078 | Other | lineage3 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR3804149 | Other | lineage3 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR4811493 | HR-TB | lineage4.9 | None | SRR20970016 | Other | lineage2.2 | None | ERR8479578 | HR-TB | lineage1.1.3.1 | None | ERR3799593 | Sensitive | lineage3 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR9786843 | Other | None | SRR6789626 | Other | None | SRR18213713 | HR-TB | None | ERR212001 | HR-TB | None | SRR28119777 | Other | lineage4.9 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR9786076 | Other | lineage3 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR26399973 | Other | La3;lineage4.9 | None | SRR5535933 | Other | lineage4.9 | None | ERR9786569 | Other | lineage4.8 | None | ERR702406 | Other | lineage2.1 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR2184523 | Other | lineage4.4.1.1 | pe | SRR6045242 | Other | lineage2.1;lineage4.9 | None |
|---|
