Rv0006 - c.1716C>G
Drug resistance types
68 Sensitive
1 RR-TB
98 HR-TB
13 MDR-TB
5 Pre-XDR-TB
0 XDR-TB
89 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.2 | 2 |
| lineage4 | 45 |
| lineage4.8 | 2 |
| lineage2.2.1 | 14 |
| lineage4.3.2.1 | 1 |
| 106 | |
| lineage4.9 | 17 |
| lineage2.2 | 10 |
| La1 | 2 |
| lineage4.6.2.2 | 5 |
| lineage3 | 22 |
| lineage4.1.3 | 2 |
| lineage4.3.3 | 4 |
| lineage4.1.2.1 | 10 |
| lineage2 | 2 |
| lineage3.1.2.1 | 1 |
| lineage4.8;La3 | 1 |
| lineage4.6.1.1 | 1 |
| lineage1.1.3.2 | 1 |
| lineage1.1.2 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.3.2 | 1 |
| lineage5.2 | 2 |
| lineage4.1 | 2 |
| lineage6.3.1 | 1 |
| lineage4.4.1.1 | 2 |
| lineage2.2.1.2 | 1 |
| lineage4.2.1 | 1 |
| lineage4.3.4.1 | 1 |
| La1.8.1 | 1 |
| lineage4.5 | 1 |
| lineage4.9;La3 | 1 |
| lineage4.2;La1.7 | 1 |
| lineage6.3;lineage4.9;lineage2.1 | 1 |
| lineage6.3;lineage2.2.1 | 1 |
| lineage4.3 | 1 |
| lineage1.2.1.1 | 1 |
| lineage2.1 | 1 |
| lineage3.1.3 | 1 |
| lineage4.1.1.2 | 1 |
| lineage4;lineage3 | 1 |
| lineage4.7 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 274 |
Geographic prevalence
Country level data for this variant is available for 3 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR7535082 | Sensitive | lineage4 | None | SRR9970979 | Sensitive | lineage4.8 | None | ERR067699 | HR-TB | lineage4 | None | SRR9971112 | Other | lineage2.2.1 | None | ERR323066 | Sensitive | lineage4 | None | ERR323108 | HR-TB | lineage4 | None | ERR323107 | Other | lineage4 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR323043 | HR-TB | None | ERR1063896 | Sensitive | None | ERR1034634 | HR-TB | None | ERR1035157 | Other | lineage4.9 | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1023525 | HR-TB | lineage4 | None | ERR1035122 | Sensitive | None | ERR1063857 | HR-TB | None | ERR133825 | Sensitive | lineage4 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR137286 | Sensitive | lineage4 | None | ERR3283027 | HR-TB | None | ERR3283025 | HR-TB | None | ERR3283010 | Other | La1 | None | ERR3283036 | HR-TB | None | ERR5336148 | Other | None | ERR3283058 | Other | lineage4.9 | None | ERR3797043 | HR-TB | None | ERR3445501 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3797036 | HR-TB | None | ERR3797069 | Other | None | ERR3797058 | Other | lineage4.9 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR3799593 | Sensitive | lineage3 | None | ERR3797086 | Other | lineage4.9 | None | ERR3803773 | Sensitive | lineage3 | None | ERR3804149 | Sensitive | lineage3 | None | ERR3803771 | Sensitive | lineage3 | None | ERR3803782 | Sensitive | lineage3 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR3806450 | Sensitive | lineage4.3.3 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3806589 | Sensitive | lineage3 | None | ERR2514707 | Sensitive | lineage3 | gb | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR3806606 | Sensitive | lineage3 | None | ERR4024991 | Other | None | ERR4796929 | Sensitive | lineage4 | None | ERR405209 | Sensitive | lineage4 | None | ERR4769452 | HR-TB | None | ERR4769457 | Other | lineage4.9 | None | ERR4769521 | HR-TB | None | ERR4796254 | Sensitive | lineage4 | None | ERR4407463 | HR-TB | None | ERR4769450 | HR-TB | None | ERR4769474 | HR-TB | lineage4 | None | ERR4797264 | Sensitive | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4798099 | Other | None | ERR4797474 | Other | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4798262 | HR-TB | La1 | None | ERR4799378 | Sensitive | lineage4 | None | ERR4798823 | HR-TB | lineage4 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4800341 | Other | lineage3 | None | ERR4800102 | Sensitive | lineage3.1.2.1 | None | ERR12015083 | Other | lineage4.8;La3 | None | ERR4810741 | HR-TB | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR4811105 | HR-TB | None | ERR4811022 | HR-TB | None | ERR4811493 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR6359045 | HR-TB | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR6358991 | HR-TB | None | ERR6866022 | Other | None | ERR6866639 | Other | None | ERR6866410 | Sensitive | None | ERR6866807 | HR-TB | lineage4 | None | ERR736834 | Sensitive | lineage4 | None | ERR702406 | HR-TB | None | ERR736874 | HR-TB | None | ERR736835 | HR-TB | None | ERR736856 | HR-TB | lineage4 | None | ERR736867 | HR-TB | None | ERR736872 | Sensitive | lineage4 | None | ERR7821126 | Sensitive | lineage1.1.3.2 | None | ERR751326 | Sensitive | lineage4 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR9117709 | HR-TB | None | ERR9786076 | Sensitive | lineage3 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9119669 | HR-TB | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9786080 | Sensitive | lineage3 | None | ERR9786078 | Sensitive | lineage3 | None | ERR9786087 | Sensitive | lineage3 | None | ERR9786081 | Sensitive | lineage3 | None | ERR9786079 | Sensitive | lineage3 | None | ERR9786085 | Sensitive | lineage3 | None | ERR9786084 | Sensitive | lineage3 | None | ERR9786089 | Sensitive | lineage3 | None | ERR9786082 | Sensitive | lineage3 | None | ERR9786141 | Sensitive | lineage4.3.3 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786440 | Other | lineage4.1 | None | ERR9786604 | Other | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR9786864 | Sensitive | lineage4.3.3 | None | ERR9786843 | Other | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | SRR10809074 | Sensitive | lineage4 | None | ERR990545 | Other | lineage3 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9787197 | Other | None | SRR10808399 | Sensitive | lineage4 | None | SRR10808482 | Other | lineage4.4.1.1 | None | SRR10808805 | Sensitive | None | SRR1158918 | Sensitive | lineage4 | None | SRR1167384 | Other | lineage4 | None | SRR1169194 | Other | None | SRR1175074 | MDR-TB | None | SRR1169306 | Other | None | SRR1172951 | Other | None | SRR1173400 | Other | None | SRR1173778 | Other | None | SRR1173384 | Other | lineage4 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173629 | Other | None | SRR1173788 | Other | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1184294 | HR-TB | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1183049 | Other | lineage2.2 | None | SRR1184380 | HR-TB | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1196566 | HR-TB | None | SRR1184388 | Other | None | SRR1196546 | HR-TB | None | SRR12142341 | HR-TB | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR12416824 | HR-TB | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR14801749 | Sensitive | None | SRR15368973 | Other | None | SRR1791747 | Other | La1.8.1 | None | SRR19303884 | HR-TB | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR19304036 | HR-TB | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR20632814 | Sensitive | lineage4 | None | SRR20969677 | HR-TB | lineage2 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR21732980 | Other | lineage4.3.3 | None | SRR20970016 | Other | lineage2.2 | None | SRR26399973 | Other | lineage4.9;La3 | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR23961559 | Other | lineage4.2;La1.7 | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | SRR3675465 | HR-TB | None | ERR176568 | Other | lineage4.3 | None | SRR3675270 | HR-TB | None | SRR3675221 | HR-TB | None | ERR4814734 | Other | lineage1.2.1.1 | None | SRR3675236 | HR-TB | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR3675246 | Sensitive | lineage4 | None | ERR2027263 | Other | lineage4 | None | ERR176643 | HR-TB | None | SRR3675503 | Sensitive | lineage4.9 | None | SRR3675311 | Other | None | SRR3675510 | Other | None | SRR5341422 | HR-TB | lineage2.1 | None | ERR4817037 | Other | lineage4.9 | None | ERR212001 | HR-TB | None | SRR3675572 | Other | None | SRR3675574 | HR-TB | None | SRR3742665 | HR-TB | None | ERR4816466 | HR-TB | None | SRR5341384 | Sensitive | lineage4.9 | None | SRR7496472 | Other | None | ERR3276142 | Sensitive | lineage3 | nl | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR234659 | HR-TB | None | ERR1035138 | MDR-TB | None | SRR5341373 | HR-TB | lineage4 | None | SRR5341400 | HR-TB | lineage4 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | ERR4818607 | Sensitive | lineage4.9 | None | SRR5007188 | Other | lineage4 | None | SRR5341453 | Sensitive | None | SRR5341432 | HR-TB | lineage4 | None | SRR5341300 | Other | lineage4 | None | SRR5341293 | HR-TB | lineage4 | None | ERR2514692 | Other | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341302 | HR-TB | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341315 | Sensitive | None | SRR5341461 | Sensitive | lineage4 | None | SRR5341330 | HR-TB | None | SRR5341308 | Sensitive | lineage4 | None | SRR5341313 | HR-TB | None | SRR5341333 | HR-TB | None | SRR5341467 | Other | lineage4 | None | ERR2660539 | Other | lineage4.9 | None | SRR5535933 | HR-TB | None | SRR6045526 | HR-TB | None | SRR6044790 | HR-TB | None | SRR6045555 | HR-TB | None | SRR6046133 | HR-TB | None | SRR6045892 | Sensitive | None | ERR4821655 | Sensitive | lineage4 | None | SRR6045053 | Other | None | SRR6044838 | Other | lineage4.9 | None | SRR6044855 | Other | lineage4.9 | None | SRR6046066 | HR-TB | None | SRR6045217 | Other | lineage4 | None | SRR6046046 | Other | None | SRR6045233 | HR-TB | None | SRR6045327 | HR-TB | None | SRR6046397 | Other | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6046305 | Other | lineage4.9 | None | SRR6046362 | HR-TB | None | SRR6046460 | HR-TB | None | SRR6046492 | Other | None | SRR6046878 | HR-TB | lineage4 | None | SRR6046540 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR4831117 | HR-TB | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | SRR6511621 | HR-TB | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR2184523 | Other | lineage4.4.1.1 | pe | SRR6789624 | MDR-TB | lineage4.1 | None | SRR6789626 | Other | None | ERR294266 | HR-TB | None | ERR502532 | HR-TB | None | ERR502510 | Sensitive | lineage4 | None | ERR502535 | Other | lineage4;lineage3 | None | SRR7496523 | Other | lineage4.7 | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR7496509 | Other | None | SRR7496517 | Other | None | SRR9970980 | Other | lineage4.1.2 | None |
|---|
