TB-Profiler result

Run: ERR4800102
Summary

Run ID: ERR4800102

Sample name:

Date: 01-04-2023 09:35:43

Number of reads: 3535414

Percentage reads mapped: 82.62

Strain: lineage3.1.2.1

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage3 East-African-Indian CAS RD750 0.99
lineage3.1 East-African-Indian Non-CAS1-Delhi RD750 0.89
lineage3.1.2 East-African-Indian CAS;CAS2 RD750 0.83
lineage3.1.2.1 East-African-Indian CAS2 RD750 0.84
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 9017 c.1716C>G synonymous_variant 0.13
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491742 c.960T>C synonymous_variant 1.0
ccsA 620698 p.Val270Ile missense_variant 0.13
rpoB 759746 c.-61C>T upstream_gene_variant 1.0
rpoB 760991 c.1185G>C synonymous_variant 0.14
rpoB 760997 c.1191G>C synonymous_variant 0.19
rpoB 761006 c.1200C>G synonymous_variant 0.19
rpoB 761015 c.1209G>C synonymous_variant 0.19
rpoB 761027 c.1221A>G synonymous_variant 0.21
rpoB 761036 c.1230G>C synonymous_variant 0.22
rpoB 761037 c.1231T>C synonymous_variant 0.22
rpoB 761051 c.1245G>T synonymous_variant 0.28
rpoB 761054 c.1248G>C synonymous_variant 0.3
rpoB 761057 c.1251G>C synonymous_variant 0.3
rpoB 761060 c.1254C>G synonymous_variant 0.3
rpoB 761063 c.1257C>G synonymous_variant 0.31
rpoB 761097 c.1291_1293delAGCinsTCG synonymous_variant 0.26
rpoB 761102 c.1296A>G synonymous_variant 0.29
rpoB 761132 c.1326G>T synonymous_variant 0.22
rpoB 761133 c.1327T>C synonymous_variant 0.23
rpoB 761150 c.1344A>C synonymous_variant 0.19
rpoB 761160 c.1354C>T synonymous_variant 0.17
rpoB 761165 c.1359G>C synonymous_variant 0.17
rpoB 761180 c.1374A>C synonymous_variant 0.14
rpoB 761189 c.1383T>C synonymous_variant 0.13
rpoB 761195 c.1389G>C synonymous_variant 0.12
rpoB 761198 c.1392G>C synonymous_variant 0.12
rpoB 761217 p.Pro471Ala missense_variant 0.12
rpoB 761220 p.Ser472Thr missense_variant 0.12
rpoB 761234 c.1428G>C synonymous_variant 0.13
rpoB 761249 c.1443A>G synonymous_variant 0.15
rpoB 761255 c.1449T>C synonymous_variant 0.16
rpoB 761261 c.1455G>T synonymous_variant 0.12
rpoB 761813 c.2007T>C synonymous_variant 0.14
rpoB 761834 c.2028T>G synonymous_variant 0.13
rpoB 761847 p.Cys681Arg missense_variant 0.12
rpoB 761862 p.Ala686Ser missense_variant 0.12
rpoB 761868 p.Asp688His missense_variant 0.12
rpoB 761873 c.2067A>G synonymous_variant 0.12
rpoB 762065 c.2259T>G synonymous_variant 0.13
rpoB 762068 c.2262C>T synonymous_variant 0.12
rpoB 762137 c.2331C>T synonymous_variant 0.12
rpoB 762140 c.2334G>C synonymous_variant 0.12
rpoB 762143 c.2337T>C synonymous_variant 0.12
rpoB 762149 c.2343G>C synonymous_variant 0.13
rpoB 762158 c.2352G>C synonymous_variant 0.13
rpoB 762167 c.2361T>C synonymous_variant 0.14
rpoB 762170 c.2364C>G synonymous_variant 0.16
rpoB 762176 c.2370T>C synonymous_variant 0.17
rpoB 762185 c.2379G>C synonymous_variant 0.19
rpoB 762209 c.2403C>G synonymous_variant 0.18
rpoB 762218 c.2412T>C synonymous_variant 0.19
rpoB 762224 c.2418C>G synonymous_variant 0.21
rpoB 762233 c.2427G>C synonymous_variant 0.2
rpoB 762245 c.2439G>C synonymous_variant 0.18
rpoB 762254 c.2448T>C synonymous_variant 0.18
rpoB 762266 c.2460T>C synonymous_variant 0.15
rpoC 762434 c.-936T>G upstream_gene_variant 1.0
rpoC 762983 c.-387C>T upstream_gene_variant 0.13
rpoC 762995 c.-375G>T upstream_gene_variant 0.13
rpoC 763028 c.-342T>C upstream_gene_variant 0.16
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoC 763034 c.-336C>G upstream_gene_variant 0.15
rpoC 763040 c.-330C>G upstream_gene_variant 0.17
rpoC 763052 c.-318G>C upstream_gene_variant 0.18
rpoC 763058 c.-312C>G upstream_gene_variant 0.18
rpoC 763070 c.-300T>C upstream_gene_variant 0.15
rpoC 763094 c.-276G>C upstream_gene_variant 0.15
rpoC 763115 c.-255T>C upstream_gene_variant 0.12
rpoC 763570 c.201G>C synonymous_variant 0.12
rpoC 763573 c.204G>C synonymous_variant 0.12
rpoC 764257 c.888G>C synonymous_variant 0.12
rpoC 764284 c.915G>C synonymous_variant 0.12
rpoC 764297 p.Met310Leu missense_variant 0.12
rpoC 764365 c.996C>T synonymous_variant 0.12
rpoC 764536 c.1167G>T synonymous_variant 0.13
rpoC 764539 c.1170C>G synonymous_variant 0.14
rpoC 764575 c.1206T>G synonymous_variant 0.14
rpoC 764611 c.1242G>C synonymous_variant 0.18
rpoC 764632 c.1263T>C synonymous_variant 0.21
rpoC 764650 c.1281G>T synonymous_variant 0.2
rpoC 764662 c.1293G>C synonymous_variant 0.2
rpoC 764701 c.1332C>G synonymous_variant 0.19
rpoC 764716 c.1347G>C synonymous_variant 0.16
rpoC 764746 c.1377G>T synonymous_variant 0.13
rpoC 764752 c.1383G>C synonymous_variant 0.14
rpoC 764758 c.1389C>G synonymous_variant 0.13
rpoC 764923 c.1554A>G synonymous_variant 0.13
rpoC 764935 c.1566T>C synonymous_variant 0.13
rpoC 764948 c.1579T>C synonymous_variant 0.16
rpoC 764953 c.1584G>C synonymous_variant 0.17
rpoC 764956 c.1587T>C synonymous_variant 0.16
rpoC 764968 c.1599T>C synonymous_variant 0.16
rpoC 764971 c.1602C>G synonymous_variant 0.17
rpoC 765004 c.1635G>T synonymous_variant 0.13
rpoC 765007 c.1638T>G synonymous_variant 0.12
rpoC 765008 c.1639T>C synonymous_variant 0.12
rpoC 765016 c.1647C>G synonymous_variant 0.13
rpoC 765019 c.1650A>G synonymous_variant 0.13
rpoC 766933 c.3564A>G synonymous_variant 0.12
rpoC 766942 c.3573C>T synonymous_variant 0.13
rpoC 766945 c.3576A>C synonymous_variant 0.13
rpoC 766948 c.3579G>C synonymous_variant 0.13
rpoC 766957 c.3588G>A synonymous_variant 0.13
rpoC 766960 c.3591C>T synonymous_variant 0.13
rpoC 766963 c.3594T>C synonymous_variant 0.12
rpoC 766972 c.3603G>C synonymous_variant 0.12
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 775961 c.2520C>G synonymous_variant 0.12
mmpL5 775981 p.Leu834Met missense_variant 0.14
mmpL5 775991 c.2490G>A synonymous_variant 0.12
mmpL5 775997 c.2484T>C synonymous_variant 0.13
mmpL5 776100 p.Thr794Ile missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781817 c.258G>T synonymous_variant 0.16
rpsL 781929 p.Gly124Ser missense_variant 0.14
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471986 n.141C>T non_coding_transcript_exon_variant 0.13
rrs 1472027 n.182C>T non_coding_transcript_exon_variant 0.21
rrs 1472032 n.187G>C non_coding_transcript_exon_variant 0.21
rrs 1472033 n.188A>C non_coding_transcript_exon_variant 0.21
rrs 1472040 n.195T>G non_coding_transcript_exon_variant 0.21
rrs 1472041 n.196C>G non_coding_transcript_exon_variant 0.22
rrs 1472053 n.211_212delGC non_coding_transcript_exon_variant 0.2
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 0.19
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.18
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.22
rrs 1472279 n.434T>C non_coding_transcript_exon_variant 0.22
rrs 1472286 n.441C>G non_coding_transcript_exon_variant 0.19
rrs 1472289 n.444T>C non_coding_transcript_exon_variant 0.19
rrs 1472290 n.445C>A non_coding_transcript_exon_variant 0.19
rrs 1472297 n.453_465delGTCCGGGTTCTCT non_coding_transcript_exon_variant 0.2
rrs 1472315 n.470T>G non_coding_transcript_exon_variant 0.19
rrs 1472324 n.479G>T non_coding_transcript_exon_variant 0.2
rrs 1472328 n.483G>C non_coding_transcript_exon_variant 0.23
rrs 1472446 n.601T>A non_coding_transcript_exon_variant 0.29
rrs 1472452 n.607G>A non_coding_transcript_exon_variant 0.29
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.36
rrs 1472489 n.644A>G non_coding_transcript_exon_variant 0.34
rrs 1472969 n.1124A>G non_coding_transcript_exon_variant 0.19
rrs 1472970 n.1125C>G non_coding_transcript_exon_variant 0.19
rrs 1472977 n.1132G>C non_coding_transcript_exon_variant 0.19
rrs 1472978 n.1133T>C non_coding_transcript_exon_variant 0.19
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.26
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.25
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.25
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.22
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.18
rrl 1473746 n.89T>C non_coding_transcript_exon_variant 0.19
rrl 1473768 n.111A>G non_coding_transcript_exon_variant 0.19
rrl 1473770 n.113T>G non_coding_transcript_exon_variant 0.2
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.2
rrl 1473813 n.156C>T non_coding_transcript_exon_variant 0.2
rrl 1473823 n.166T>C non_coding_transcript_exon_variant 0.22
rrl 1473839 n.182G>T non_coding_transcript_exon_variant 0.27
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 0.17
rrl 1473887 n.230T>C non_coding_transcript_exon_variant 0.17
rrl 1473888 n.231T>A non_coding_transcript_exon_variant 0.17
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.14
rrl 1473899 n.242A>G non_coding_transcript_exon_variant 0.14
rrl 1473916 n.259C>A non_coding_transcript_exon_variant 0.13
rrl 1473922 n.265A>G non_coding_transcript_exon_variant 0.13
rrl 1473923 n.266C>G non_coding_transcript_exon_variant 0.13
rrl 1473924 n.267_268insT non_coding_transcript_exon_variant 0.12
rrl 1473937 n.280C>T non_coding_transcript_exon_variant 0.14
rrl 1473943 n.286G>T non_coding_transcript_exon_variant 0.14
rrl 1473945 n.288T>A non_coding_transcript_exon_variant 0.14
rrl 1473946 n.289A>T non_coding_transcript_exon_variant 0.14
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.12
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.14
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.2
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 0.13
rrl 1474552 n.895C>T non_coding_transcript_exon_variant 0.23
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.14
rrl 1474629 n.972G>A non_coding_transcript_exon_variant 0.14
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.14
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 0.14
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 0.14
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 0.14
rrl 1474639 n.982G>T non_coding_transcript_exon_variant 0.14
rrl 1474640 n.983C>T non_coding_transcript_exon_variant 0.14
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.2
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.24
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.22
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.23
rrl 1475202 n.1545G>C non_coding_transcript_exon_variant 0.19
rrl 1475206 n.1549C>T non_coding_transcript_exon_variant 0.16
rrl 1475209 n.1552G>C non_coding_transcript_exon_variant 0.16
rrl 1475213 n.1556C>T non_coding_transcript_exon_variant 0.17
rrl 1475355 n.1698C>T non_coding_transcript_exon_variant 0.16
rrl 1475369 n.1712G>C non_coding_transcript_exon_variant 0.16
rrl 1475375 n.1718G>A non_coding_transcript_exon_variant 0.15
rrl 1475376 n.1719A>C non_coding_transcript_exon_variant 0.16
rrl 1475379 n.1722G>A non_coding_transcript_exon_variant 0.17
rrl 1475398 n.1741C>T non_coding_transcript_exon_variant 0.22
rrl 1475403 n.1746T>G non_coding_transcript_exon_variant 0.23
rrl 1475404 n.1747A>C non_coding_transcript_exon_variant 0.23
rrl 1475405 n.1748A>G non_coding_transcript_exon_variant 0.23
rrl 1475408 n.1752delT non_coding_transcript_exon_variant 0.26
rrl 1475419 n.1762C>T non_coding_transcript_exon_variant 0.31
rrl 1475429 n.1772G>A non_coding_transcript_exon_variant 0.35
rrl 1475430 n.1773T>G non_coding_transcript_exon_variant 0.36
rrl 1475452 n.1795C>A non_coding_transcript_exon_variant 0.4
rrl 1475479 n.1822C>T non_coding_transcript_exon_variant 0.33
rrl 1475480 n.1823A>G non_coding_transcript_exon_variant 0.33
rrl 1475482 n.1825A>T non_coding_transcript_exon_variant 0.34
rrl 1475483 n.1826C>A non_coding_transcript_exon_variant 0.34
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.3
rrl 1475544 n.1887A>T non_coding_transcript_exon_variant 0.19
rrl 1475545 n.1888T>G non_coding_transcript_exon_variant 0.19
rrl 1475573 n.1916G>A non_coding_transcript_exon_variant 0.21
rrl 1475647 n.1990G>C non_coding_transcript_exon_variant 0.12
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 0.16
rrl 1475753 n.2096C>G non_coding_transcript_exon_variant 0.23
rrl 1475759 n.2102C>T non_coding_transcript_exon_variant 0.25
rrl 1475764 n.2107A>G non_coding_transcript_exon_variant 0.24
rrl 1475765 n.2108A>G non_coding_transcript_exon_variant 0.24
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.25
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.24
rrl 1475989 n.2332T>C non_coding_transcript_exon_variant 0.25
rrl 1475991 n.2334T>C non_coding_transcript_exon_variant 0.25
rrl 1475995 n.2338G>A non_coding_transcript_exon_variant 0.25
rrl 1476033 n.2376T>C non_coding_transcript_exon_variant 0.13
rrl 1476034 n.2377C>G non_coding_transcript_exon_variant 0.13
rrl 1476035 n.2378G>C non_coding_transcript_exon_variant 0.13
rrl 1476044 n.2387T>G non_coding_transcript_exon_variant 0.14
rrl 1476045 n.2388G>T non_coding_transcript_exon_variant 0.14
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.14
rrl 1476056 n.2399G>A non_coding_transcript_exon_variant 0.14
rrl 1476058 n.2401T>C non_coding_transcript_exon_variant 0.14
rrl 1476088 n.2431A>T non_coding_transcript_exon_variant 0.13
rrl 1476095 n.2438C>T non_coding_transcript_exon_variant 0.11
rrl 1476103 n.2446C>G non_coding_transcript_exon_variant 0.12
rrl 1476105 n.2448G>A non_coding_transcript_exon_variant 0.12
rrl 1476106 n.2449A>T non_coding_transcript_exon_variant 0.12
rrl 1476110 n.2453G>C non_coding_transcript_exon_variant 0.13
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.12
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.16
rrl 1476160 n.2503T>A non_coding_transcript_exon_variant 0.16
rrl 1476164 n.2507A>G non_coding_transcript_exon_variant 0.15
rrl 1476165 n.2508T>A non_coding_transcript_exon_variant 0.15
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.22
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.23
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.22
rrl 1476251 n.2594T>G non_coding_transcript_exon_variant 0.24
rrl 1476252 n.2595T>A non_coding_transcript_exon_variant 0.24
rrl 1476256 n.2599A>T non_coding_transcript_exon_variant 0.21
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.25
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.3
rrl 1476529 n.2872A>G non_coding_transcript_exon_variant 0.23
rrl 1476540 n.2883C>T non_coding_transcript_exon_variant 0.26
rrl 1476583 n.2926G>C non_coding_transcript_exon_variant 0.19
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.19
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.18
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.18
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.16
rrl 1476664 n.3007T>C non_coding_transcript_exon_variant 0.21
rrl 1476665 n.3008T>C non_coding_transcript_exon_variant 0.22
rrl 1476674 n.3017T>C non_coding_transcript_exon_variant 0.19
rrl 1476679 n.3022T>C non_coding_transcript_exon_variant 0.19
rrl 1476689 n.3033delC non_coding_transcript_exon_variant 0.12
rrl 1476716 n.3059A>C non_coding_transcript_exon_variant 0.12
inhA 1674801 c.600T>C synonymous_variant 0.13
inhA 1674870 c.669T>C synonymous_variant 0.12
rpsA 1833862 c.321G>T synonymous_variant 0.13
rpsA 1833894 p.Ala118Glu missense_variant 0.13
rpsA 1833904 c.363G>A synonymous_variant 0.12
rpsA 1833928 c.387G>C synonymous_variant 0.14
rpsA 1833955 c.414G>C synonymous_variant 0.12
rpsA 1833970 c.429G>C synonymous_variant 0.17
rpsA 1833979 c.438T>C synonymous_variant 0.17
rpsA 1833988 c.447C>G synonymous_variant 0.16
rpsA 1833991 c.450C>G synonymous_variant 0.16
rpsA 1834000 c.459G>C synonymous_variant 0.17
rpsA 1834009 c.468C>G synonymous_variant 0.17
rpsA 1834012 c.471G>C synonymous_variant 0.15
rpsA 1834015 c.474G>C synonymous_variant 0.17
rpsA 1834021 c.480C>T synonymous_variant 0.17
rpsA 1834030 c.489C>G synonymous_variant 0.17
rpsA 1834040 p.Lys167Arg missense_variant 0.15
rpsA 1834054 c.513C>G synonymous_variant 0.19
rpsA 1834090 c.549G>C synonymous_variant 0.17
rpsA 1834096 c.555G>C synonymous_variant 0.17
rpsA 1834102 c.561T>C synonymous_variant 0.15
rpsA 1834114 c.573G>C synonymous_variant 0.15
rpsA 1834348 c.807T>C synonymous_variant 0.15
rpsA 1834357 c.816T>C synonymous_variant 0.16
rpsA 1834361 c.820T>C synonymous_variant 0.16
rpsA 1834366 c.825A>G synonymous_variant 0.17
rpsA 1834396 c.855G>C synonymous_variant 0.2
rpsA 1834411 c.870T>C synonymous_variant 0.2
rpsA 1834423 c.882G>C synonymous_variant 0.19
rpsA 1834432 c.891G>C synonymous_variant 0.2
rpsA 1834451 c.910T>C synonymous_variant 0.23
rpsA 1834456 c.915T>C synonymous_variant 0.21
rpsA 1834468 c.927A>G synonymous_variant 0.2
rpsA 1834474 c.933C>T synonymous_variant 0.18
rpsA 1834489 c.948T>C synonymous_variant 0.16
rpsA 1834504 c.963G>C synonymous_variant 0.15
rpsA 1834520 p.Ala327Ser missense_variant 0.15
rpsA 1834528 c.987T>C synonymous_variant 0.14
rpsA 1834540 c.999G>C synonymous_variant 0.13
rpsA 1834543 c.1002C>G synonymous_variant 0.14
rpsA 1834546 c.1005T>C synonymous_variant 0.14
rpsA 1834554 c.1014_1015delTG frameshift_variant 0.13
rpsA 1834558 c.1017_1018insAG frameshift_variant 0.13
rpsA 1834603 p.Glu354Asp missense_variant 0.12
rpsA 1834606 c.1065C>T synonymous_variant 0.13
rpsA 1834612 c.1071G>C synonymous_variant 0.13
rpsA 1834622 p.Ser361Thr missense_variant 0.12
rpsA 1834639 c.1098T>C synonymous_variant 0.14
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2154724 p.Arg463Leu missense_variant 1.0
PPE35 2167926 p.Leu896Ser missense_variant 1.0
PPE35 2168604 p.Pro670Leu missense_variant 0.86
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
pncA 2289047 c.195C>T synonymous_variant 0.99
pncA 2289365 c.-125delC upstream_gene_variant 0.98
ahpC 2726105 c.-88G>A upstream_gene_variant 1.0
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
rpoA 3877848 c.660C>T synonymous_variant 0.12
rpoA 3877856 c.652T>C synonymous_variant 0.14
rpoA 3877857 c.651G>A synonymous_variant 0.14
rpoA 3877875 c.633T>C synonymous_variant 0.13
rpoA 3877881 c.627G>C synonymous_variant 0.14
rpoA 3877887 c.621G>C synonymous_variant 0.15
rpoA 3877893 c.615C>T synonymous_variant 0.14
rpoA 3877905 c.603A>G synonymous_variant 0.14
rpoA 3877908 c.600T>C synonymous_variant 0.15
rpoA 3877920 c.588G>C synonymous_variant 0.15
rpoA 3877926 c.582G>C synonymous_variant 0.15
clpC1 4038878 c.1827A>G synonymous_variant 0.12
clpC1 4039001 p.Asn568Lys missense_variant 0.12
clpC1 4039064 c.1641C>T synonymous_variant 0.13
clpC1 4039067 c.1638G>C synonymous_variant 0.13
clpC1 4039073 c.1632C>T synonymous_variant 0.12
clpC1 4039481 c.1224T>C synonymous_variant 0.12
clpC1 4039517 c.1188C>G synonymous_variant 0.14
clpC1 4039526 c.1179G>C synonymous_variant 0.14
clpC1 4039550 c.1155G>C synonymous_variant 0.14
clpC1 4039559 c.1146C>G synonymous_variant 0.14
clpC1 4039565 c.1140G>C synonymous_variant 0.15
clpC1 4039570 p.Met379Leu missense_variant 0.13
clpC1 4039576 p.Ala377Pro missense_variant 0.13
clpC1 4039589 c.1116G>C synonymous_variant 0.14
clpC1 4039592 c.1113G>C synonymous_variant 0.15
clpC1 4039610 c.1095G>C synonymous_variant 0.16
clpC1 4039613 c.1092C>T synonymous_variant 0.15
clpC1 4039622 c.1083C>T synonymous_variant 0.16
clpC1 4039649 c.1056G>C synonymous_variant 0.16
clpC1 4039652 c.1053G>C synonymous_variant 0.17
clpC1 4039661 c.1044T>C synonymous_variant 0.16
clpC1 4039688 c.1017G>A synonymous_variant 0.14
clpC1 4039724 c.981A>G synonymous_variant 0.13
clpC1 4039733 c.972G>T synonymous_variant 0.11
clpC1 4039751 c.954A>G synonymous_variant 0.12
clpC1 4039991 c.714G>T synonymous_variant 0.11
embC 4242075 p.Arg738Gln missense_variant 1.0
embA 4242643 c.-590C>T upstream_gene_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0