EBG00000313339 - n.156C>T


Drug resistance types
23 Sensitive 21 RR-TB 63 HR-TB 51 MDR-TB 3 Pre-XDR-TB 3 XDR-TB 81 Other
lineage Counts
lineage Count
La3;lineage4.9 5
lineage4.9 43
lineage4.3.4.2.1 2
M.canetti;lineage2.2 3
lineage4.9;lineage9 2
lineage4.1;lineage4.8 2
La1;lineage2;lineage4.9 1
lineage4.1.2.1 14
M.canetti;lineage2.2.2;lineage6.2 2
La3;M.canetti;lineage2.1;lineage4.9 12
M.canetti;lineage2.1;lineage4.1.4;lineage4.9 2
lineage2.1;lineage4.9 4
lineage3 6
lineage4.5 1
lineage4.1.2.1.1 1
lineage4.4.1.2 1
lineage2.2.1 12
La1.7;lineage4.9 2
M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 1
lineage2.1;lineage2.2;lineage6.3 1
lineage2.2.1.1 4
lineage1.1.2 1
M.canetti;lineage2.1;lineage4.3.1;lineage4.9 1
M.canetti;lineage2.1 1
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 4
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 3
lineage5.2 2
M.canetti;lineage2.1;lineage4.9;lineage6.3 5
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 1
La1.8.1 2
M.canetti;lineage2.1;lineage4.9 18
lineage3.1;lineage9 1
La3;M.canetti;lineage4.9 2
M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 1
La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 1
La3;lineage2.1;lineage4.9 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 1
lineage4.2;lineage4.6.3;lineage4.9.1 1
lineage4.1.1.3 5
lineage4.6.4 2
La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 1
La1.6;La3;lineage4.9 1
lineage4.6.2.2 2
lineage3.1.2.2 1
La1.6;La3;M.canetti;lineage2.1;lineage4.9 1
lineage2.1;lineage4.1.1.1;lineage6.3 2
M.canetti;lineage2.1;lineage4.1.2.1 1
La2;lineage4.9;lineage9 1
lineage2.1;lineage4.9;lineage6.3;lineage8 1
lineage1.2.2.2 2
M.canetti;lineage2.1;lineage6.3 1
lineage4.4.1.1 3
M.canetti;lineage4.9 1
lineage4.2;lineage4.8.1;lineage4.9 1
lineage1.2.1.2.1 1
La1.2 1
lineage4.3.3 3
lineage4.9;lineage6.3 3
lineage4.8 2
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 4
M.canetti;lineage2.1;lineage3 1
lineage4.6.3;lineage4.9 2
4
M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 1
La1.7.1 1
La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 1
La1.7;lineage4.9;lineage6 1
lineage2.1;lineage4.9;lineage6.3 1
lineage3.1.2.1;lineage3.1.2.2 1
La3;M.canetti;lineage2.1;lineage3.1 1
La2;lineage4.9 1
La1;lineage4.9 2
lineage4.2.1 1
La1;lineage4.1.2 1
lineage3.1.2.1 1
lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 1
lineage1.1 1
La3;M.canetti;lineage3.1 1
lineage4.2;lineage4.9 2
lineage4.3.2;lineage4.9 1
M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
lineage4.2;lineage4.6.3;lineage4.9 1
La3;M.canetti;lineage4.8;lineage4.9 1
La1.7 1
M.canetti;lineage4.2;lineage4.9 1
M.canetti;lineage2.1;lineage4 1
lineage2.2 1
lineage2.1;lineage4.3.2 1
lineage4.9.1 1
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
La1.6;La3;lineage4.6.4;lineage4.9 1
spoligotype Counts
spoligotype Count
None 245
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR1165628 Other La3;lineage4.9 None
SRR13861146 RR-TB lineage4.9 None
ERR176518 Sensitive lineage4.3.4.2.1 None
ERR1873396 Pre-XDR-TB M.canetti;lineage2.2 None
SRR1174897 MDR-TB lineage4.9;lineage9 None
ERR9786526 Other lineage4.1;lineage4.8 None
SRR14801749 HR-TB lineage4.9 None
ERR067699 Sensitive La1;lineage2;lineage4.9 None
ERR5917710 Other lineage4.1.2.1 None
SRR5341470 MDR-TB lineage4.9;lineage9 None
ERR1873492 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR3283016 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR10808399 Sensitive lineage4.9 None
ERR5311082 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
ERR278594 HR-TB lineage2.1;lineage4.9 None
ERR990545 Other lineage3 None
SRR13423544 Other lineage4.5 None
ERR2446144 Other lineage3 nl
ERR760733 MDR-TB lineage4.1.2.1.1 None
ERR323056 HR-TB lineage4.4.1.2 None
SRR26937107 MDR-TB lineage2.2.1 None
SRR3675488 Other La1.7;lineage4.9 None
SRR1165423 RR-TB lineage4.1.2.1 None
ERR13285305 Other lineage4.9 None
ERR3283017 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 None
ERR8976043 HR-TB lineage2.1;lineage2.2;lineage6.3 None
ERR9786656 Sensitive lineage4.1.2.1 None
SRR1180147 Other lineage2.2.1.1 None
SRR1183144 Other lineage2.2.1 None
SRR17658572 Sensitive lineage1.1.2 None
SRR3675320 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9 None
ERR323033 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR1183106 RR-TB lineage2.2.1.1 None
ERR323041 HR-TB M.canetti;lineage2.1 None
SRR13861400 Other lineage4.9 None
SRR6325448 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR11252612 Other La3;lineage4.9 None
ERR2517528 RR-TB lineage3 nl
SRR29126406 RR-TB lineage2.2.1 None
ERR124652 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR126600 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR9119483 Pre-XDR-TB lineage5.2 None
SRR1180226 HR-TB lineage4.9 None
SRR1181289 Other lineage2.2.1 None
ERR4831545 XDR-TB M.canetti;lineage2.2 None
ERR323060 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR5311098 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR6358837 HR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR18289200 Other lineage4.9 None
SRR29096410 Other lineage4.9 None
ERR3797023 HR-TB La1.8.1 None
ERR176658 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675322 HR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
SRR25827418 XDR-TB lineage3.1;lineage9 None
ERR4188342 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR2693229 RR-TB La3;M.canetti;lineage4.9 None
ERR11252599 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 None
ERR1035239 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR11252736 Other lineage4.9 None
ERR3283024 Other La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 None
ERR3275220 Other lineage3 nl
ERR176568 HR-TB La3;lineage2.1;lineage4.9 None
ERR3797044 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 None
ERR3283026 HR-TB lineage4.2;lineage4.6.3;lineage4.9.1 None
ERR4831546 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR550636 MDR-TB lineage4.1.1.3 None
ERR5311081 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR9119508 MDR-TB lineage4.6.4 None
SRR6046362 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
SRR1163221 MDR-TB lineage4.1.2.1 None
ERR13292526 Other lineage4.9 None
SRR1167271 MDR-TB lineage4.1.1.3 None
SRR1166821 Other lineage4.1.2.1 None
SRR3675486 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR736856 Sensitive lineage4.9 None
ERR2693254 Other La1.6;La3;lineage4.9 None
SRR1169306 Other La3;lineage4.9 None
SRR16156817 Other lineage4.9 None
ERR3468544 Other lineage2.1;lineage4.9 None
ERR4821655 HR-TB lineage4.9 None
ERR5311078 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR3675389 Other lineage4.9 None
ERR9119525 MDR-TB lineage4.6.2.2 None
ERR4798648 MDR-TB lineage3.1.2.2 None
ERR4872119 MDR-TB lineage4.6.2.2 None
ERR3283020 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.9 None
SRR6325447 MDR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
SRR1791696 Other La1.8.1 None
ERR1023295 MDR-TB M.canetti;lineage2.1;lineage4.1.2.1 None
SRR3675515 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR323053 MDR-TB La2;lineage4.9;lineage9 None
ERR2517489 Sensitive lineage4.1.2.1 nl
SRR3675464 HR-TB lineage2.1;lineage4.9;lineage6.3;lineage8 None
SRR6045948 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR9125637 Sensitive lineage1.2.2.2 None
SRR28868489 Other lineage2.2.1 None
SRR6325444 MDR-TB M.canetti;lineage2.1;lineage6.3 None
SRR1173767 MDR-TB lineage4.4.1.1 None
ERR176643 Other La3;lineage4.9 None
ERR473332 Other lineage4.9 None
ERR323055 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR6045519 MDR-TB M.canetti;lineage4.9 None
ERR5311096 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR6046259 Sensitive lineage4.9 None
SRR1184024 RR-TB lineage2.2.1.1 None
SRR1183111 HR-TB lineage4.9 None
SRR6045785 MDR-TB lineage4.2;lineage4.8.1;lineage4.9 None
SRR1510066 RR-TB lineage1.2.1.2.1 None
SRR23961549 Other La1.2 None
ERR5908228 RR-TB lineage4.3.3 None
SRR6046225 Other lineage4.9;lineage6.3 None
ERR7821163 Other lineage2.2.1 None
SRR29097066 Sensitive lineage4.9 None
ERR5311090 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR1873393 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4816151 Sensitive lineage4.8 None
ERR323038 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3797014 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR4814536 MDR-TB M.canetti;lineage2.1;lineage3 None
ERR3797081 Sensitive lineage4.9 None
SRR1165584 Other lineage4.1.2.1 None
ERR9119096 RR-TB lineage4.3.3 None
ERR11252558 Other lineage4.6.3;lineage4.9 None
ERR11252664 Other lineage2.2.1 None
ERR987722 MDR-TB None
ERR212001 HR-TB None
ERR212033 Other lineage4.9 None
ERR6359045 Other M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 None
ERR323047 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR9786525 Other lineage4.1;lineage4.8 None
SRR13861326 Other lineage4.9 None
SRR7240492 HR-TB La1.7.1 None
SRR13861168 RR-TB lineage4.9 None
SRR1167384 Other La3;lineage4.9 None
ERR2693252 Sensitive lineage4.9 None
ERR3797016 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6045952 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR1034652 Other La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 None
SRR1180137 Other lineage2.2.1 None
ERR6866547 Other La1.7;lineage4.9;lineage6 None
SRR3675508 Other lineage2.1;lineage4.9;lineage6.3 None
ERR3468607 Other lineage4.9 None
SRR1172310 HR-TB lineage4.9 None
SRR3675507 Other lineage4.9 None
ERR987729 HR-TB lineage3.1.2.1;lineage3.1.2.2 None
ERR323058 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR6046514 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR2199988 MDR-TB lineage4.1.1.3 None
ERR5311083 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4872077 Pre-XDR-TB lineage5.2 None
ERR323034 MDR-TB La3;M.canetti;lineage2.1;lineage3.1 None
ERR550637 MDR-TB lineage4.1.1.3 None
ERR3797083 RR-TB lineage4.9 None
ERR473277 HR-TB La3;M.canetti;lineage4.9 None
ERR5311101 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR323036 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR323039 HR-TB La2;lineage4.9 None
ERR9896144 Other lineage3 None
SRR1162740 Other lineage4.1.2.1 None
SRR1167055 Other lineage4.1.2.1 None
SRR6325445 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR323040 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR3675461 RR-TB lineage4.9 None
ERR323064 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR161033 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SAMEA2533358 MDR-TB lineage4.1.1.3 None
SRR10808805 Other La1;lineage4.9 None
SRR6458421 MDR-TB lineage2.2.1 None
SRR29096150 Other lineage4.9 None
ERR212121 HR-TB lineage4.9;lineage6.3 None
ERR2229143 RR-TB lineage4.9 None
ERR2693230 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR9786619 Sensitive lineage4.8 None
SRR6045290 RR-TB M.canetti;lineage2.1;lineage4.9 None
ERR126618 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR14802079 MDR-TB lineage4.2.1 None
SRR3675518 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR1181091 Other lineage2.2.1.1 None
SRR16058433 Sensitive lineage1.2.2.2 None
ERR133825 HR-TB La1;lineage4.9 None
ERR5311099 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3275215 RR-TB lineage4.1.2.1 nl
ERR176766 HR-TB lineage2.1;lineage4.9 None
SRR1180172 Other lineage2.2.1 None
SRR6045158 Other lineage4.9 None
SRR9970978 Sensitive La1;lineage4.1.2 None
ERR176751 Other lineage4.9 None
SRR6831950 Sensitive lineage4.3.3 None
ERR11465905 Sensitive lineage4.4.1.1 None
SRR29050859 Other lineage4.9 None
SAMN02414850 Other lineage4.1.2.1 None
ERR4800102 Sensitive lineage3.1.2.1 None
SRR13861332 Other lineage4.9 None
ERR6358991 HR-TB lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 None
ERR3077978 RR-TB lineage1.1 None
ERR323054 MDR-TB La3;M.canetti;lineage3.1 None
ERR386953 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR9786843 Other None
SRR26159047 Other lineage4.6.3;lineage4.9 None
SRR3675554 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR6325442 HR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
ERR473314 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1162864 Other lineage4.1.2.1 None
SRR6044815 Other lineage4.9 None
SRR6046295 HR-TB lineage4.2;lineage4.9 None
ERR7911670 XDR-TB M.canetti;lineage2.2 None
ERR736865 HR-TB lineage4.3.2;lineage4.9 None
SRR6046397 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
SRR1173453 Other lineage4.4.1.1 None
SRR13861266 Sensitive lineage4.9 None
ERR2446118 Other lineage4.1.2.1 nl
SRR1640750 Other None
ERR5311097 Sensitive lineage4.2;lineage4.6.3;lineage4.9 None
ERR867544 Other lineage4.9 None
ERR3275196 Other lineage2.2.1 nl
ERR502524 HR-TB lineage4.9;lineage6.3 None
ERR038268 HR-TB La3;M.canetti;lineage4.8;lineage4.9 None
ERR4828872 Sensitive lineage4.2;lineage4.9 None
ERR13285304 Other lineage4.9 None
SRR3675222 Other La1.7 None
SRR10808668 Sensitive lineage2.2.1 None
SRR29097026 Other lineage4.9 None
SRR1165506 Other lineage4.1.2.1 None
SRR3675571 HR-TB M.canetti;lineage4.2;lineage4.9 None
ERR323063 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR161034 HR-TB lineage4.3.4.2.1 None
ERR2693239 RR-TB M.canetti;lineage2.1;lineage4 None
ERR294248 MDR-TB lineage2.1;lineage4.9 None
ERR4872102 MDR-TB lineage4.6.4 None
SRR3675506 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1183049 RR-TB lineage2.2 None
SRR3675482 Other lineage4.9 None
ERR772255 MDR-TB lineage2.1;lineage4.3.2 None
ERR8665994 Other lineage4.9 None
ERR245758 Other lineage4.9.1 None
ERR2693245 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR124651 MDR-TB La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
ERR3797017 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR4821053 RR-TB lineage3 None
SRR13861176 Other lineage4.9 None
SRR3675492 Other La1.7;lineage4.9 None
ERR124642 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
ERR2693228 RR-TB lineage4.9 None
ERR2693231 Other La1.6;La3;lineage4.6.4;lineage4.9 None
ERR126608 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None