lineage | Count |
---|---|
75 | |
lineage2.2.1 | 14 |
lineage4.1.1.2 | 1 |
lineage3 | 7 |
lineage4.1.1 | 1 |
lineage4.1.2.1 | 16 |
lineage4.9 | 35 |
lineage4 | 9 |
lineage1.1 | 1 |
lineage2.2 | 4 |
lineage4.6.4 | 2 |
lineage5.2 | 2 |
lineage4.6.2.2 | 2 |
lineage4.3.3 | 4 |
lineage4.8 | 4 |
La1.8.1 | 3 |
lineage3.1 | 2 |
La2 | 1 |
lineage4.1.2 | 1 |
lineage4.7 | 1 |
lineage4.2.1 | 2 |
lineage4.4.1.2 | 1 |
lineage4.4.1.1 | 3 |
lineage4.1.1.3.1 | 1 |
La1.2 | 3 |
lineage3.1.2 | 1 |
lineage1.1.2 | 3 |
lineage3.1.2.1 | 1 |
lineage4.3.4.1 | 1 |
lineage4.1.2.1.1 | 1 |
lineage4.9.1 | 1 |
lineage4.3.2 | 1 |
lineage1.1.3.2 | 1 |
lineage4.8;lineage4.1 | 2 |
lineage1.2.2.2 | 2 |
lineage3.1.2.2;lineage3.1.2.1 | 1 |
lineage2.2.2 | 2 |
lineage2 | 1 |
lineage4.1.1.3 | 3 |
La3 | 1 |
lineage2.2.1.1 | 4 |
lineage4.5 | 1 |
lineage1.2.1.2.1 | 1 |
lineage9;lineage3.1 | 1 |
lineage4.1 | 1 |
lineage4.9;lineage4.6.3 | 1 |
lineage3;lineage2.1 | 1 |
lineage4.3.4.2.1 | 2 |
lineage4.3 | 1 |
lineage4;lineage1.1.2 | 1 |
spoligotype | Count |
---|---|
None | 231 |
ID | Drug resistance | Lineage | Country iso2 | ERR2693231 | Other | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR4818252 | Other | lineage4.1.1.2 | None | ERR3275220 | Other | lineage3 | nl | ERR2446563 | Other | lineage2.2.1 | nl | ERR2229143 | Other | lineage4.1.1 | None | SAMN02414850 | Other | lineage4.1.2.1 | None | ERR4821053 | Other | lineage3 | None | SRR5341470 | HR-TB | None | ERR2693254 | Other | None | ERR2693230 | Other | None | ERR2693239 | HR-TB | None | ERR2446118 | Other | lineage4.1.2.1 | nl | ERR2693257 | Other | None | ERR278594 | HR-TB | None | SRR6045519 | HR-TB | None | ERR2693232 | Other | lineage4.9 | None | ERR4821655 | Sensitive | lineage4 | None | ERR2446144 | Other | lineage3 | nl | SRR6045158 | Other | lineage4.9 | None | SRR6045952 | HR-TB | None | SRR6045264 | Sensitive | lineage2.2.1 | None | SRR6046225 | HR-TB | None | SRR6045399 | Other | None | ERR2517489 | Sensitive | lineage4.1.2.1 | nl | SRR6325442 | HR-TB | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6046362 | HR-TB | None | SRR6325444 | HR-TB | None | ERR2517528 | Other | lineage3 | nl | SRR6046250 | Other | lineage4.9 | None | SRR6046397 | Other | None | SRR6046460 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6325447 | HR-TB | None | ERR3077978 | Other | lineage1.1 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR4872102 | MDR-TB | lineage4.6.4 | None | ERR4872077 | Pre-XDR-TB | lineage5.2 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR4831546 | HR-TB | lineage2.2 | None | SRR6831950 | Other | lineage4.3.3 | None | SRR6982141 | RR-TB | lineage4.3.3 | None | ERR294266 | HR-TB | None | ERR294248 | HR-TB | None | SRR7645927 | Other | lineage4.8 | None | ERR5087450 | Other | La1.8.1 | None | ERR5311099 | HR-TB | None | SRR7645906 | Other | lineage2.2.1 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR323036 | HR-TB | None | ERR502524 | HR-TB | La2 | None | ERR5311081 | HR-TB | None | ERR5311090 | HR-TB | None | ERR323038 | HR-TB | None | SRR9970978 | Sensitive | lineage4.1.2 | None | ERR323054 | HR-TB | lineage3.1 | None | SRR7645928 | RR-TB | lineage4.7 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | ERR323041 | HR-TB | None | ERR323053 | HR-TB | None | ERR323039 | HR-TB | None | ERR323055 | HR-TB | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR067699 | HR-TB | lineage4 | None | ERR323063 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR3283017 | HR-TB | None | ERR1034652 | Other | None | ERR133825 | Sensitive | lineage4 | None | ERR3283032 | HR-TB | None | ERR3283024 | Other | None | ERR11465905 | Sensitive | lineage4.4.1.1 | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3797016 | HR-TB | None | ERR3468544 | HR-TB | None | ERR3797014 | Other | None | ERR473332 | Other | lineage4 | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797082 | Other | lineage4.9 | None | ERR387052 | Pre-XDR-TB | lineage4.1.1.3.1 | None | ERR3797017 | Other | None | ERR3797044 | Other | None | ERR3797061 | Other | None | ERR3797081 | Sensitive | lineage4 | None | ERR3797083 | HR-TB | None | ERR4188350 | HR-TB | None | ERR4772225 | Other | La1.2 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4798139 | Sensitive | lineage1.1.2 | None | ERR4798504 | Other | lineage3 | None | ERR4799171 | Pre-XDR-TB | lineage4.8 | None | ERR4800102 | Sensitive | lineage3.1.2.1 | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR5908228 | Other | lineage4.3.3 | None | ERR6358991 | HR-TB | None | ERR6326069 | Pre-XDR-TB | lineage4.3.4.1 | None | ERR6198317 | Other | La1.2 | None | ERR6358837 | HR-TB | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR245758 | Other | lineage4.9.1 | None | ERR736856 | HR-TB | lineage4 | None | ERR6359045 | HR-TB | None | ERR6866547 | Sensitive | lineage4 | None | ERR736865 | HR-TB | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR8976043 | HR-TB | None | ERR7821126 | Sensitive | lineage1.1.3.2 | None | ERR7821163 | Other | lineage2.2.1 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9119096 | Other | lineage4.3.3 | None | ERR9119483 | Pre-XDR-TB | lineage5.2 | None | ERR9119508 | MDR-TB | lineage4.6.4 | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9125637 | Sensitive | lineage1.2.2.2 | None | ERR9896144 | Other | lineage3 | None | ERR9786619 | Sensitive | lineage4.8 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR987722 | HR-TB | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | ERR9786526 | Other | lineage4.8;lineage4.1 | None | ERR9786843 | Other | None | ERR990545 | Other | lineage3 | None | SRR069978 | Pre-XDR-TB | lineage2.2.2 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR069981 | HR-TB | lineage2.2.2 | None | SRR069989 | HR-TB | lineage2 | None | SRR10808399 | Sensitive | lineage4 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | SRR10808805 | Sensitive | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1165423 | Other | lineage4.1.2.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1167271 | MDR-TB | lineage4.1.1.3 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR1167384 | Other | lineage4 | None | SRR1169306 | Other | None | SRR1169249 | Other | La3 | None | SRR1172214 | HR-TB | lineage4.9 | None | SRR1172310 | HR-TB | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1173788 | Other | None | SRR1174897 | HR-TB | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR1183049 | Other | lineage2.2 | None | SRR1183145 | Other | lineage2.2.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR13423544 | Other | lineage4.5 | None | SRR1184024 | Other | lineage2.2.1.1 | None | SRR13837566 | Other | lineage4.9 | None | SRR13837615 | Sensitive | lineage4.9 | None | SRR13861151 | RR-TB | lineage4.9 | None | SRR13861146 | Sensitive | lineage4.9 | None | SRR13861175 | Other | lineage4.9 | None | SRR13861168 | RR-TB | lineage4.9 | None | SRR13861176 | Sensitive | lineage4.9 | None | SRR13861180 | Other | lineage4.9 | None | SRR13861304 | Other | lineage4.9 | None | SRR13861266 | Sensitive | lineage4.9 | None | SRR13861326 | Other | lineage4.9 | None | SRR13861332 | Other | lineage4.9 | None | SRR13861386 | HR-TB | lineage4.9 | None | SRR13861381 | MDR-TB | lineage4.9 | None | SRR13861413 | Sensitive | lineage4.9 | None | SRR13861400 | Other | lineage4.9 | None | SRR13861439 | RR-TB | lineage4.9 | None | SRR13861415 | Other | lineage4.9 | None | SRR13861434 | RR-TB | lineage4.9 | None | SRR13861534 | Other | lineage4.9 | None | SRR13861500 | RR-TB | lineage4.9 | None | SRR13861686 | RR-TB | lineage4.9 | None | SRR13861666 | Sensitive | lineage4.9 | None | SRR13861549 | RR-TB | lineage4.9 | None | SRR13861646 | Other | lineage4.9 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR14801749 | Sensitive | None | SRR16058433 | Sensitive | lineage1.2.2.2 | None | SRR1510066 | Other | lineage1.2.1.2.1 | None | SRR17658572 | Sensitive | lineage1.1.2 | None | SRR16156804 | RR-TB | lineage4.9 | None | SRR1640750 | HR-TB | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | SRR18213723 | Sensitive | lineage1.1.2 | None | SRR25827418 | Pre-XDR-TB | lineage9;lineage3.1 | None | SRR1791696 | Other | La1.8.1 | None | SRR23961549 | Other | La1.2 | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR26159047 | Other | lineage4.9;lineage4.6.3 | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR6325445 | HR-TB | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | ERR1035239 | HR-TB | None | SRR3675482 | HR-TB | None | ERR161034 | Other | lineage4.3.4.2.1 | None | SRR3675488 | HR-TB | None | ERR161033 | HR-TB | None | SRR3675486 | HR-TB | None | SRR3675501 | HR-TB | None | SRR3675222 | Other | None | SRR3675234 | Other | None | ERR176568 | Other | lineage4.3 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | ERR212121 | HR-TB | None | SRR3675509 | Other | lineage4.9 | None | ERR4816151 | Other | lineage4.8 | None | ERR212033 | HR-TB | None | ERR176643 | HR-TB | None | ERR176740 | HR-TB | None | ERR176751 | HR-TB | None | ERR212001 | HR-TB | None | SRR3675558 | HR-TB | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR4816466 | HR-TB | None | SRR3675571 | HR-TB | None | ERR3275215 | Other | lineage4.1.2.1 | nl | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None |
---|