TB-Profiler result

Run: SRR13861146
Summary

Run ID: SRR13861146

Sample name:

Date: 03-04-2023 09:24:40

Number of reads: 836069

Percentage reads mapped: 13.95

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5192 c.-48C>G upstream_gene_variant 1.0
gyrA 6307 c.-995T>G upstream_gene_variant 0.14
gyrA 6640 c.-662A>G upstream_gene_variant 0.14
gyrA 6649 c.-653T>C upstream_gene_variant 0.16
gyrA 6652 c.-650C>G upstream_gene_variant 0.15
gyrA 6670 c.-632G>C upstream_gene_variant 0.19
gyrA 6673 c.-629A>C upstream_gene_variant 0.19
gyrA 6700 c.-602T>C upstream_gene_variant 0.19
gyrA 6703 c.-599G>C upstream_gene_variant 0.19
gyrA 6706 c.-596G>A upstream_gene_variant 0.2
gyrA 6709 c.-593A>G upstream_gene_variant 0.2
gyrA 6712 c.-590G>C upstream_gene_variant 0.19
gyrA 6727 c.-575G>T upstream_gene_variant 0.19
gyrA 6728 c.-574_-572delCTAinsTTG upstream_gene_variant 0.19
gyrA 6745 c.-557T>G upstream_gene_variant 0.2
gyrA 6760 c.-542G>C upstream_gene_variant 0.18
gyrA 6778 c.-524C>T upstream_gene_variant 0.12
gyrA 7631 c.330G>C synonymous_variant 0.17
gyrA 7637 c.336C>G synonymous_variant 0.17
gyrA 7649 c.348C>T synonymous_variant 0.19
gyrA 7652 c.351C>T synonymous_variant 0.19
gyrA 7658 c.357A>G synonymous_variant 0.25
gyrA 7664 c.363T>C synonymous_variant 0.25
gyrA 7670 c.369A>G synonymous_variant 0.28
gyrA 7676 c.375G>C synonymous_variant 0.25
gyrA 7683 c.382A>C synonymous_variant 0.24
gyrA 7694 c.393A>G synonymous_variant 0.25
gyrA 7697 c.396C>G synonymous_variant 0.26
gyrA 7710 c.409T>C synonymous_variant 0.27
gyrA 7715 c.414G>C synonymous_variant 0.27
gyrA 7728 c.427_429delAGGinsCGC synonymous_variant 0.24
gyrA 7760 c.459C>T synonymous_variant 0.18
gyrA 7763 c.462T>C synonymous_variant 0.19
gyrA 7799 c.498A>G synonymous_variant 0.19
gyrA 7835 c.534A>G synonymous_variant 0.15
gyrA 7838 c.537C>G synonymous_variant 0.19
gyrA 7859 c.558A>C synonymous_variant 0.21
gyrA 7862 c.561C>G synonymous_variant 0.21
gyrA 7865 c.564T>C synonymous_variant 0.22
gyrA 7883 c.582G>C synonymous_variant 0.25
gyrA 7884 p.Arg195Gly missense_variant 0.25
gyrA 7892 c.591G>C synonymous_variant 0.21
gyrA 7898 p.Asp199Glu missense_variant 0.21
gyrA 7919 p.Glu206Asp missense_variant 0.18
gyrA 7923 p.His208Tyr missense_variant 0.19
gyrA 7928 p.Asp209Glu missense_variant 0.21
gyrA 7942 p.Glu214Ala missense_variant 0.16
gyrA 7955 c.654G>C synonymous_variant 0.16
gyrA 7958 c.657C>G synonymous_variant 0.16
gyrA 8069 c.768T>C synonymous_variant 0.15
gyrA 8078 c.777A>G synonymous_variant 0.15
gyrA 8090 c.789C>G synonymous_variant 0.18
gyrA 8096 c.795T>C synonymous_variant 0.19
gyrA 8099 c.798T>C synonymous_variant 0.19
gyrA 8111 c.810G>C synonymous_variant 0.24
gyrA 8156 c.855T>C synonymous_variant 0.23
gyrA 8168 c.867A>G synonymous_variant 0.23
gyrA 8174 c.873C>G synonymous_variant 0.22
gyrA 8177 c.876A>C synonymous_variant 0.22
gyrA 8198 c.897T>C synonymous_variant 0.21
gyrA 8204 c.903C>T synonymous_variant 0.17
gyrA 8207 c.906T>C synonymous_variant 0.18
gyrA 8216 c.915G>A synonymous_variant 0.19
gyrA 8219 c.918T>C synonymous_variant 0.16
gyrA 8225 c.924T>C synonymous_variant 0.18
gyrA 8234 c.933T>G synonymous_variant 0.16
gyrA 8235 c.934_936delTTAinsCTG synonymous_variant 0.16
gyrA 8253 p.Ile318Leu missense_variant 0.17
gyrA 8264 c.963T>C synonymous_variant 0.15
gyrA 8267 c.966G>C synonymous_variant 0.16
gyrA 8270 c.969G>C synonymous_variant 0.16
gyrA 8366 c.1065G>C synonymous_variant 0.16
gyrA 8375 c.1074G>C synonymous_variant 0.17
gyrA 8442 c.1141C>T synonymous_variant 0.14
gyrA 8480 c.1179C>T synonymous_variant 0.16
gyrA 8486 c.1185T>C synonymous_variant 0.15
gyrA 8489 c.1188A>G synonymous_variant 0.15
gyrA 8498 c.1197C>T synonymous_variant 0.13
gyrA 8504 c.1203G>C synonymous_variant 0.16
gyrA 8597 c.1296C>G synonymous_variant 0.17
gyrA 8603 c.1302A>G synonymous_variant 0.18
gyrA 8619 c.1318T>C synonymous_variant 0.2
gyrA 8624 c.1323G>C synonymous_variant 0.21
gyrA 8627 c.1326C>G synonymous_variant 0.18
gyrA 8636 c.1335A>G synonymous_variant 0.19
gyrA 8642 c.1341A>G synonymous_variant 0.23
gyrA 8645 c.1344C>G synonymous_variant 0.2
gyrA 8672 c.1371A>G synonymous_variant 0.16
gyrA 8693 c.1392T>C synonymous_variant 0.19
gyrA 8699 c.1398A>G synonymous_variant 0.19
gyrA 8711 c.1410A>C synonymous_variant 0.17
gyrA 8714 c.1413A>G synonymous_variant 0.16
gyrA 8717 c.1416C>G synonymous_variant 0.19
gyrA 8720 c.1419G>A synonymous_variant 0.16
gyrA 8903 c.1602T>C synonymous_variant 0.14
gyrA 8915 c.1614A>G synonymous_variant 0.15
gyrA 8939 c.1638T>C synonymous_variant 0.13
gyrA 8966 c.1665C>G synonymous_variant 0.14
gyrA 8967 p.Ala556Pro missense_variant 0.13
gyrA 8987 c.1686C>G synonymous_variant 0.14
gyrA 9658 c.2357_2358insT frameshift_variant 0.97
fgd1 490779 c.-4A>T upstream_gene_variant 1.0
rpoB 760041 p.Gly79Arg missense_variant 1.0
rpoB 760533 p.Val243Ile missense_variant 0.13
rpoB 760652 c.846C>A synonymous_variant 0.91
rpoB 760683 c.877T>C synonymous_variant 0.16
rpoB 760718 c.912C>G synonymous_variant 0.17
rpoB 760721 c.915C>G synonymous_variant 0.2
rpoB 760724 c.918T>C synonymous_variant 0.17
rpoB 760730 c.924T>C synonymous_variant 0.16
rpoB 760817 c.1011A>G synonymous_variant 0.14
rpoB 760820 c.1014T>C synonymous_variant 0.14
rpoB 760826 c.1020C>G synonymous_variant 0.13
rpoB 760919 c.1113C>G synonymous_variant 0.16
rpoB 760925 c.1119T>C synonymous_variant 0.16
rpoB 760928 c.1122G>C synonymous_variant 0.16
rpoB 760934 c.1128C>T synonymous_variant 0.19
rpoB 760946 c.1140A>G synonymous_variant 0.21
rpoB 760970 c.1164G>C synonymous_variant 0.17
rpoB 760982 c.1176G>C synonymous_variant 0.13
rpoB 761015 c.1209G>C synonymous_variant 0.19
rpoB 761021 c.1215G>C synonymous_variant 0.21
rpoB 761027 c.1221A>G synonymous_variant 0.2
rpoB 761036 c.1230G>C synonymous_variant 0.19
rpoB 761037 c.1231T>C synonymous_variant 0.19
rpoB 761051 c.1245G>T synonymous_variant 0.17
rpoB 761054 c.1248G>C synonymous_variant 0.17
rpoB 761057 c.1251G>C synonymous_variant 0.17
rpoB 761060 c.1254C>G synonymous_variant 0.17
rpoB 761063 c.1257C>G synonymous_variant 0.18
rpoB 761094 c.1288C>T synonymous_variant 0.18
rpoB 761097 c.1291_1292delAGinsTC synonymous_variant 0.17
rpoB 761102 c.1296A>G synonymous_variant 0.18
rpoB 761122 p.Pro439Arg missense_variant 0.84
rpoB 761133 c.1327_1329delTTGinsCTC synonymous_variant 0.19
rpoB 761150 c.1344A>C synonymous_variant 0.17
rpoB 761165 c.1359G>C synonymous_variant 0.13
rpoB 761183 c.1377T>G synonymous_variant 0.16
rpoB 761189 c.1383T>G synonymous_variant 0.14
rpoB 761636 c.1830G>T synonymous_variant 0.12
rpoB 761687 c.1881C>T synonymous_variant 0.12
rpoB 761765 c.1959T>C synonymous_variant 0.16
rpoB 761772 p.His656Ala missense_variant 0.17
rpoB 761778 p.Asn658Asp missense_variant 0.17
rpoB 761791 p.Arg662His missense_variant 0.13
rpoB 761813 c.2007T>C synonymous_variant 0.18
rpoB 761815 p.Ala670Glu missense_variant 0.18
rpoB 761834 c.2028T>C synonymous_variant 0.21
rpoB 761847 p.Cys681Ser missense_variant 0.18
rpoB 761852 c.2046C>G synonymous_variant 0.18
rpoB 761858 c.2052G>C synonymous_variant 0.16
rpoB 761864 c.2058G>C synonymous_variant 0.16
rpoB 761873 c.2067A>G synonymous_variant 0.16
rpoB 761885 c.2079T>C synonymous_variant 0.14
rpoC 763070 c.-300T>C upstream_gene_variant 0.14
rpoC 763076 c.-294C>G upstream_gene_variant 0.14
rpoC 763115 c.-255T>C upstream_gene_variant 0.14
rpoC 763136 c.-234C>T upstream_gene_variant 0.13
rpoC 763872 p.Gly168Ala missense_variant 0.13
rpoC 763876 p.Glu169Asp missense_variant 0.13
rpoC 763919 c.550C>T synonymous_variant 0.14
rpoC 763933 c.564C>T synonymous_variant 0.17
rpoC 763945 c.576T>C synonymous_variant 0.16
rpoC 763960 c.591T>C synonymous_variant 0.16
rpoC 763967 p.Gly200Ser missense_variant 0.17
rpoC 763978 c.609C>G synonymous_variant 0.16
rpoC 764005 c.636G>C synonymous_variant 0.16
rpoC 764011 c.642T>C synonymous_variant 0.19
rpoC 764380 c.1011G>C synonymous_variant 0.15
rpoC 764405 c.1036A>C synonymous_variant 0.15
rpoC 764431 c.1062G>C synonymous_variant 0.18
rpoC 764434 c.1065A>G synonymous_variant 0.18
rpoC 764446 c.1077T>C synonymous_variant 0.19
rpoC 764449 c.1080G>C synonymous_variant 0.19
rpoC 764455 c.1086G>C synonymous_variant 0.19
rpoC 764458 c.1089G>C synonymous_variant 0.19
rpoC 764461 c.1092A>G synonymous_variant 0.2
rpoC 764497 c.1128A>G synonymous_variant 0.19
rpoC 764530 c.1161C>G synonymous_variant 0.15
rpoC 764536 c.1167G>C synonymous_variant 0.15
rpoC 764539 c.1170C>G synonymous_variant 0.15
rpoC 764626 c.1257C>T synonymous_variant 0.16
rpoC 764632 c.1263T>C synonymous_variant 0.2
rpoC 764644 c.1275G>C synonymous_variant 0.19
rpoC 764650 c.1281G>T synonymous_variant 0.19
rpoC 764714 c.1345C>T synonymous_variant 0.16
rpoC 764720 c.1351C>T synonymous_variant 0.16
rpoC 765319 c.1950A>G synonymous_variant 0.14
rpoC 765326 p.His653Ala missense_variant 0.14
rpoC 765330 p.Ser654Asn missense_variant 0.14
rpoC 765349 c.1980T>C synonymous_variant 0.15
rpoC 765352 c.1983G>C synonymous_variant 0.15
rpoC 765383 p.Met672Leu missense_variant 0.21
rpoC 765404 p.Leu679Val missense_variant 0.22
rpoC 765409 c.2040T>C synonymous_variant 0.17
rpoC 765412 c.2043T>C synonymous_variant 0.17
rpoC 765421 c.2052C>G synonymous_variant 0.25
rpoC 765451 c.2082C>G synonymous_variant 0.27
rpoC 765452 p.Ala695Ser missense_variant 0.27
rpoC 765478 c.2109T>C synonymous_variant 0.29
rpoC 765499 c.2130C>G synonymous_variant 0.26
rpoC 765508 c.2139C>G synonymous_variant 0.25
rpoC 765541 c.2172C>G synonymous_variant 0.24
rpoC 765553 c.2184C>T synonymous_variant 0.23
rpoC 765556 c.2187G>C synonymous_variant 0.21
rpoC 765559 c.2190G>C synonymous_variant 0.22
rpoC 765578 c.2209C>T synonymous_variant 0.16
rpoC 765583 c.2214G>T synonymous_variant 0.15
rpoC 765613 p.His748Gln missense_variant 0.17
rpoC 765625 c.2256C>G synonymous_variant 0.16
rpoC 765628 c.2259G>C synonymous_variant 0.16
rpoC 765631 p.Asp754Glu missense_variant 0.16
rpoC 765658 c.2289C>T synonymous_variant 0.17
rpoC 765700 c.2331T>C synonymous_variant 0.15
rpoC 765985 c.2616C>T synonymous_variant 0.13
rpoC 766043 p.Gln892Glu missense_variant 0.16
rpoC 766672 c.3303T>C synonymous_variant 0.14
rpoC 766726 c.3357T>C synonymous_variant 0.13
rpoC 766738 c.3369G>T synonymous_variant 0.13
rpoC 766765 c.3396A>C synonymous_variant 0.15
rpoC 766774 c.3405T>C synonymous_variant 0.15
rpoC 766801 c.3432C>A synonymous_variant 0.15
rpoC 766804 c.3435A>G synonymous_variant 0.15
rpoC 766843 c.3474T>C synonymous_variant 0.15
mmpL5 775929 p.Asn851Ile missense_variant 0.88
mmpL5 775966 p.Ala839Ser missense_variant 0.16
mmpL5 775981 p.Leu834Met missense_variant 0.2
mmpL5 776000 c.2481G>C synonymous_variant 0.17
mmpL5 776009 c.2472A>G synonymous_variant 0.16
mmpL5 776029 c.2452C>T synonymous_variant 0.15
mmpS5 778941 c.-36A>G upstream_gene_variant 1.0
rplC 801246 c.438C>G synonymous_variant 0.14
rplC 801255 c.447C>T synonymous_variant 0.17
rplC 801267 c.459A>C synonymous_variant 0.14
rplC 801301 c.493C>A synonymous_variant 0.14
rplC 801312 c.504G>C synonymous_variant 0.15
rplC 801324 c.516T>C synonymous_variant 0.17
fbiC 1303584 c.654C>G synonymous_variant 0.18
fbiC 1303590 c.660A>G synonymous_variant 0.15
fbiC 1303602 c.672A>G synonymous_variant 0.15
fbiC 1303605 c.675C>G synonymous_variant 0.15
fbiC 1303608 c.678G>A synonymous_variant 0.15
fbiC 1303611 c.681G>C synonymous_variant 0.14
fbiC 1303614 c.684C>T synonymous_variant 0.14
fbiC 1303617 c.687C>G synonymous_variant 0.14
fbiC 1303632 c.702T>G synonymous_variant 0.17
fbiC 1303638 c.708A>G synonymous_variant 0.17
fbiC 1303653 c.723G>C synonymous_variant 0.17
fbiC 1303659 c.729T>C synonymous_variant 0.17
fbiC 1303660 p.Val244Thr missense_variant 0.18
fbiC 1303674 c.744C>G synonymous_variant 0.27
fbiC 1303686 c.756C>G synonymous_variant 0.24
fbiC 1303695 c.765T>C synonymous_variant 0.2
fbiC 1303708 c.778T>C synonymous_variant 0.24
fbiC 1304694 c.1764A>C synonymous_variant 0.16
fbiC 1304703 c.1773C>G synonymous_variant 0.16
fbiC 1304715 c.1785G>C synonymous_variant 0.15
fbiC 1304724 c.1794A>G synonymous_variant 0.17
fbiC 1304727 c.1797A>G synonymous_variant 0.17
fbiC 1304784 c.1854T>C synonymous_variant 0.17
fbiC 1304811 c.1881C>G synonymous_variant 0.14
fbiC 1304817 c.1887T>C synonymous_variant 0.14
embR 1417376 c.-29T>C upstream_gene_variant 1.0
rrs 1472969 n.1124A>G non_coding_transcript_exon_variant 0.13
rrl 1473740 n.83G>A non_coding_transcript_exon_variant 0.9
rrl 1473756 n.99G>A non_coding_transcript_exon_variant 0.13
rrl 1473813 n.156C>T non_coding_transcript_exon_variant 0.15
rrl 1473937 n.280C>T non_coding_transcript_exon_variant 0.14
rrl 1473945 n.288T>C non_coding_transcript_exon_variant 0.16
rrl 1473995 n.338G>T non_coding_transcript_exon_variant 0.15
rrl 1474103 n.446A>T non_coding_transcript_exon_variant 0.15
rrl 1474104 n.447G>A non_coding_transcript_exon_variant 0.15
rrl 1474111 n.454T>C non_coding_transcript_exon_variant 0.19
rrl 1474112 n.455T>A non_coding_transcript_exon_variant 0.18
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.15
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.15
rrl 1474181 n.524C>T non_coding_transcript_exon_variant 0.16
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.14
rrl 1474574 n.917A>T non_coding_transcript_exon_variant 0.9
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.14
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.14
rrl 1475061 n.1404C>T non_coding_transcript_exon_variant 0.19
rrl 1475088 n.1431A>T non_coding_transcript_exon_variant 0.17
rrl 1475199 n.1542G>A non_coding_transcript_exon_variant 0.2
rrl 1475206 n.1549C>T non_coding_transcript_exon_variant 0.15
rrl 1475213 n.1556C>T non_coding_transcript_exon_variant 0.16
rrl 1475249 n.1592T>C non_coding_transcript_exon_variant 0.21
rrl 1475252 n.1595C>T non_coding_transcript_exon_variant 0.23
rrl 1475266 n.1609T>C non_coding_transcript_exon_variant 0.22
rrl 1475271 n.1614A>C non_coding_transcript_exon_variant 0.25
rrl 1475273 n.1616T>A non_coding_transcript_exon_variant 0.25
rrl 1475275 n.1618C>T non_coding_transcript_exon_variant 0.26
rrl 1475276 n.1619T>C non_coding_transcript_exon_variant 0.26
rrl 1475291 n.1634A>C non_coding_transcript_exon_variant 0.27
rrl 1475313 n.1656G>A non_coding_transcript_exon_variant 0.25
rrl 1475315 n.1658A>T non_coding_transcript_exon_variant 0.28
rrl 1475333 n.1676T>C non_coding_transcript_exon_variant 0.28
rrl 1475355 n.1698C>T non_coding_transcript_exon_variant 0.31
rrl 1475369 n.1712G>C non_coding_transcript_exon_variant 0.29
rrl 1475419 n.1762C>T non_coding_transcript_exon_variant 0.26
rrl 1475483 n.1826C>T non_coding_transcript_exon_variant 0.25
rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 0.18
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.22
rrl 1475599 n.1942A>G non_coding_transcript_exon_variant 0.17
rrl 1475608 n.1951T>C non_coding_transcript_exon_variant 0.16
rrl 1475638 n.1981C>T non_coding_transcript_exon_variant 0.2
rrl 1475642 n.1985T>C non_coding_transcript_exon_variant 0.19
rrl 1475657 n.2000A>G non_coding_transcript_exon_variant 0.2
rrl 1475659 n.2002G>T non_coding_transcript_exon_variant 0.18
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.15
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.2
rrl 1476583 n.2926G>A non_coding_transcript_exon_variant 0.17
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.17
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.17
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.15
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.14
inhA 1674537 c.336C>G synonymous_variant 0.15
inhA 1674561 c.360C>T synonymous_variant 0.15
inhA 1674564 c.363C>T synonymous_variant 0.15
inhA 1674582 c.381T>C synonymous_variant 0.16
inhA 1674585 c.384T>C synonymous_variant 0.16
inhA 1674589 p.Met130Leu missense_variant 0.17
rpsA 1833589 c.48A>T synonymous_variant 0.15
rpsA 1833595 c.54T>C synonymous_variant 0.15
rpsA 1833619 c.78A>C synonymous_variant 0.15
rpsA 1833661 c.120A>G synonymous_variant 0.21
rpsA 1833667 c.126C>G synonymous_variant 0.2
rpsA 1833724 c.183C>G synonymous_variant 0.2
rpsA 1833727 c.186G>C synonymous_variant 0.2
rpsA 1833742 c.201A>G synonymous_variant 0.21
rpsA 1833745 c.204G>C synonymous_variant 0.21
rpsA 1833787 c.246C>G synonymous_variant 0.21
rpsA 1833790 c.249T>A synonymous_variant 0.18
rpsA 1833799 c.258C>G synonymous_variant 0.22
rpsA 1833811 c.270G>C synonymous_variant 0.18
rpsA 1833838 c.297G>C synonymous_variant 0.18
rpsA 1833841 c.300C>G synonymous_variant 0.18
rpsA 1833847 c.306C>G synonymous_variant 0.16
rpsA 1833856 c.315A>G synonymous_variant 0.15
rpsA 1833862 c.321G>T synonymous_variant 0.15
rpsA 1833874 c.333T>C synonymous_variant 0.19
rpsA 1833928 c.387G>C synonymous_variant 0.21
rpsA 1833940 c.399C>G synonymous_variant 0.23
rpsA 1833970 c.429G>C synonymous_variant 0.18
rpsA 1833979 c.438T>C synonymous_variant 0.17
rpsA 1834000 c.459G>C synonymous_variant 0.15
rpsA 1834015 c.474G>C synonymous_variant 0.17
rpsA 1834021 c.480C>T synonymous_variant 0.16
rpsA 1834150 c.609G>C synonymous_variant 0.15
rpsA 1834153 c.612T>C synonymous_variant 0.15
rpsA 1834154 p.Asn205His missense_variant 0.15
rpsA 1834169 p.Thr210Ala missense_variant 0.15
rpsA 1834177 c.636A>C synonymous_variant 0.18
rpsA 1834186 c.645C>G synonymous_variant 0.17
rpsA 1834189 c.648G>C synonymous_variant 0.17
rpsA 1834195 c.654G>C synonymous_variant 0.17
rpsA 1834222 c.681T>C synonymous_variant 0.13
rpsA 1834240 c.699T>C synonymous_variant 0.14
rpsA 1834249 c.708T>C synonymous_variant 0.15
rpsA 1834297 c.756C>G synonymous_variant 0.18
rpsA 1834303 c.762T>G synonymous_variant 0.17
rpsA 1834306 c.765T>C synonymous_variant 0.17
rpsA 1834366 c.825A>G synonymous_variant 0.14
rpsA 1834558 c.1017C>G synonymous_variant 0.18
rpsA 1834606 c.1065C>G synonymous_variant 0.14
rpsA 1834610 p.Arg357Gly missense_variant 0.87
rpsA 1834639 c.1098T>C synonymous_variant 0.13
rpsA 1834666 c.1125G>C synonymous_variant 0.15
rpsA 1834669 c.1128G>C synonymous_variant 0.15
rpsA 1834688 c.1147_1149delAGTinsTCC synonymous_variant 0.15
rpsA 1834732 c.1191T>C synonymous_variant 0.17
rpsA 1834733 p.Ala398Pro missense_variant 0.17
rpsA 1834753 c.1212T>C synonymous_variant 0.17
rpsA 1834765 c.1224A>G synonymous_variant 0.17
rpsA 1834780 c.1239A>G synonymous_variant 0.15
ndh 2101828 c.1215C>T synonymous_variant 1.0
ndh 2102009 p.Ser345Asn missense_variant 0.14
ndh 2102026 c.1017G>C synonymous_variant 0.14
ndh 2102050 c.993T>C synonymous_variant 0.14
ndh 2102053 c.990G>C synonymous_variant 0.15
PPE35 2168706 p.Ser636Phe missense_variant 1.0
pncA 2289887 c.-646A>C upstream_gene_variant 0.95
kasA 2517947 c.-168C>T upstream_gene_variant 0.12
kasA 2518672 c.558G>C synonymous_variant 0.14
kasA 2518687 c.573C>T synonymous_variant 0.14
kasA 2518696 c.582C>G synonymous_variant 0.15
kasA 2518702 c.588C>T synonymous_variant 0.14
kasA 2518714 c.600A>C synonymous_variant 0.15
kasA 2518717 c.603C>T synonymous_variant 0.14
kasA 2518723 p.Glu203Asp missense_variant 0.14
kasA 2518732 c.618C>G synonymous_variant 0.14
kasA 2518741 c.627G>C synonymous_variant 0.17
kasA 2518747 c.633C>G synonymous_variant 0.17
kasA 2518768 c.654C>G synonymous_variant 0.17
kasA 2518783 c.669T>C synonymous_variant 0.15
kasA 2518792 c.678C>G synonymous_variant 0.15
kasA 2518795 c.681C>G synonymous_variant 0.15
folC 2746838 p.Ala254Glu missense_variant 1.0
ribD 2987500 p.Gly221Asp missense_variant 1.0
thyX 3067531 p.Ala139Thr missense_variant 0.15
thyX 3067640 c.306G>C synonymous_variant 0.14
thyX 3067643 c.303C>T synonymous_variant 0.15
thyX 3067661 c.285C>G synonymous_variant 0.14
thyX 3068082 c.-137T>C upstream_gene_variant 1.0
thyA 3073892 c.580T>C synonymous_variant 0.14
thyA 3073893 c.579C>G synonymous_variant 0.14
thyA 3073925 c.547T>C synonymous_variant 0.17
thyA 3073926 c.546G>C synonymous_variant 0.17
thyA 3073929 c.543T>C synonymous_variant 0.16
thyA 3073953 c.519T>C synonymous_variant 0.17
thyA 3073977 c.495A>G synonymous_variant 0.21
thyA 3073989 c.483T>C synonymous_variant 0.21
thyA 3074001 c.471C>G synonymous_variant 0.27
thyA 3074004 c.468T>C synonymous_variant 0.24
thyA 3074010 c.462C>G synonymous_variant 0.21
thyA 3074031 c.441T>C synonymous_variant 0.18
thyA 3074037 c.435C>G synonymous_variant 0.17
thyA 3074056 p.Glu139Pro missense_variant 0.15
thyA 3074076 c.396C>G synonymous_variant 0.15
thyA 3074097 c.375C>G synonymous_variant 0.16
thyA 3074100 c.372T>C synonymous_variant 0.15
thyA 3074106 c.366T>C synonymous_variant 0.16
thyA 3074117 c.355C>T synonymous_variant 0.17
thyA 3074120 c.352T>C synonymous_variant 0.17
thyA 3074130 c.342G>C synonymous_variant 0.15
fbiD 3338954 c.-164A>G upstream_gene_variant 1.0
fbiD 3339235 p.Leu40Val missense_variant 1.0
fbiD 3339406 p.Thr97Ala missense_variant 1.0
Rv3083 3448625 p.Leu41Gln missense_variant 1.0
fbiB 3642247 p.Asn238Thr missense_variant 1.0
fbiB 3642283 p.Glu250Ala missense_variant 1.0
rpoA 3877482 c.1026C>G synonymous_variant 0.15
rpoA 3877494 p.Glu338Asp missense_variant 0.14
rpoA 3877503 c.1005G>C synonymous_variant 0.14
rpoA 3877507 p.Gly334Ala missense_variant 0.14
rpoA 3877515 c.993G>C synonymous_variant 0.14
rpoA 3877613 p.Ile299Val missense_variant 0.19
rpoA 3877638 c.870T>C synonymous_variant 0.16
rpoA 3877656 c.852T>C synonymous_variant 0.17
rpoA 3877668 c.840A>G synonymous_variant 0.17
rpoA 3877677 p.Ala277Ser missense_variant 0.17
rpoA 3877680 c.828G>C synonymous_variant 0.17
rpoA 3877686 c.822A>G synonymous_variant 0.17
rpoA 3877692 c.816G>C synonymous_variant 0.17
rpoA 3877704 c.804G>T synonymous_variant 0.16
rpoA 3877743 c.765T>C synonymous_variant 0.22
rpoA 3877764 c.744C>G synonymous_variant 0.29
rpoA 3877770 c.738A>G synonymous_variant 0.33
rpoA 3877776 c.732T>C synonymous_variant 0.3
rpoA 3877782 c.726T>C synonymous_variant 0.29
rpoA 3877818 c.690A>G synonymous_variant 0.25
rpoA 3877839 c.669G>C synonymous_variant 0.21
rpoA 3877857 c.651G>A synonymous_variant 0.25
rpoA 3877866 c.642G>C synonymous_variant 0.26
rpoA 3877872 c.636C>T synonymous_variant 0.21
rpoA 3877875 c.633T>G synonymous_variant 0.19
rpoA 3878094 c.414C>G synonymous_variant 0.16
rpoA 3878118 c.390T>C synonymous_variant 0.15
rpoA 3878141 p.Met123Leu missense_variant 0.16
rpoA 3878142 p.Gly122Glu missense_variant 0.16
rpoA 3878169 c.339G>C synonymous_variant 0.16
rpoA 3878184 c.324C>T synonymous_variant 0.16
rpoA 3878187 c.321C>G synonymous_variant 0.13
rpoA 3878193 c.315T>C synonymous_variant 0.14
rpoA 3878199 c.309T>C synonymous_variant 0.14
rpoA 3878202 c.306G>C synonymous_variant 0.14
rpoA 3878217 c.291A>G synonymous_variant 0.17
rpoA 3878220 c.288C>T synonymous_variant 0.17
rpoA 3878271 c.237T>C synonymous_variant 0.16
rpoA 3878284 p.Glu75Ala missense_variant 0.19
rpoA 3878292 c.216T>C synonymous_variant 0.2
rpoA 3878298 c.210A>G synonymous_variant 0.2
rpoA 3878304 c.204G>C synonymous_variant 0.18
rpoA 3878313 c.195G>C synonymous_variant 0.18
rpoA 3878322 c.186A>G synonymous_variant 0.2
rpoA 3878331 c.177A>G synonymous_variant 0.19
rpoA 3878334 c.174T>C synonymous_variant 0.2
rpoA 3878337 c.171T>C synonymous_variant 0.23
rpoA 3878346 c.162T>C synonymous_variant 0.21
rpoA 3878364 c.144A>G synonymous_variant 0.14
rpoA 3878698 c.-191A>G upstream_gene_variant 0.15
rpoA 3878701 c.-194C>G upstream_gene_variant 0.16
clpC1 4039268 c.1437C>G synonymous_variant 0.15
clpC1 4039274 c.1431G>C synonymous_variant 0.15
clpC1 4039298 c.1407T>C synonymous_variant 0.15
clpC1 4039319 c.1386T>C synonymous_variant 0.17
clpC1 4039322 c.1383T>C synonymous_variant 0.17
clpC1 4039328 c.1377A>G synonymous_variant 0.17
clpC1 4039334 c.1371G>C synonymous_variant 0.17
clpC1 4039337 p.Thr456Gln missense_variant 0.17
clpC1 4039388 c.1317C>A synonymous_variant 0.17
clpC1 4039391 c.1314T>G synonymous_variant 0.17
clpC1 4039409 c.1296T>C synonymous_variant 0.15
clpC1 4039483 c.1221_1222insC frameshift_variant 1.0
clpC1 4039524 p.Phe394Tyr missense_variant 0.13
clpC1 4039526 c.1179G>C synonymous_variant 0.14
clpC1 4039576 p.Ala377Ser missense_variant 0.16
clpC1 4039577 c.1128T>C synonymous_variant 0.16
clpC1 4039586 c.1119G>C synonymous_variant 0.16
clpC1 4039616 c.1089G>C synonymous_variant 0.16
clpC1 4039622 c.1083C>G synonymous_variant 0.17
clpC1 4040459 c.246C>G synonymous_variant 0.14
clpC1 4040465 c.240T>C synonymous_variant 0.14
clpC1 4040471 c.234T>C synonymous_variant 0.14
embC 4240591 c.729C>G synonymous_variant 0.15
embC 4240594 c.732C>G synonymous_variant 0.14
embC 4240632 p.Met257Thr missense_variant 0.19
embC 4240654 c.792C>T synonymous_variant 0.14
embC 4240671 p.Thr270Ile missense_variant 0.16
embC 4240678 c.816T>G synonymous_variant 0.16
embC 4240706 p.Val282Met missense_variant 0.14
embC 4240726 c.864G>C synonymous_variant 0.17
embA 4243843 c.613dupG frameshift_variant 1.0
embA 4244833 p.Val534Ala missense_variant 1.0
embA 4245735 p.Ala835Ser missense_variant 0.97
embB 4247491 c.978G>C synonymous_variant 0.19
embB 4247497 c.984T>C synonymous_variant 0.19
embB 4247500 c.987C>G synonymous_variant 0.14
embB 4247512 c.999T>C synonymous_variant 0.17
embB 4247587 c.1074G>A synonymous_variant 0.12
embB 4247629 c.1116C>G synonymous_variant 0.12
embB 4247938 c.1425G>C synonymous_variant 0.14
aftB 4267994 p.Met281Ile missense_variant 1.0