lineage | Count |
---|---|
lineage3 | 4 |
lineage4.3.4.1 | 3 |
lineage4 | 5 |
lineage4.3.3 | 4 |
lineage4.6.4 | 2 |
lineage4.1.2.1 | 15 |
36 | |
lineage4.9 | 32 |
lineage4.1.2.1.1 | 1 |
lineage4.3.2 | 1 |
lineage6 | 1 |
lineage2.2.2 | 2 |
lineage2 | 1 |
lineage4.4.1.1 | 2 |
lineage4.5 | 1 |
lineage2.2.1 | 6 |
lineage4.1 | 1 |
La1.8.1 | 3 |
lineage3;lineage2.1 | 1 |
lineage4;lineage1.1.2 | 1 |
lineage4.1.1.3 | 1 |
lineage4.1.1 | 1 |
lineage1.1.2 | 1 |
lineage1.1 | 1 |
lineage3.1 | 2 |
lineage4.3.4.2.1 | 1 |
lineage4.4.1.2 | 1 |
spoligotype | Count |
---|---|
None | 130 |
ID | Drug resistance | Lineage | Country iso2 | ERR9786076 | Sensitive | lineage3 | None | ERR6326069 | Pre-XDR-TB | lineage4.3.4.1 | None | ERR6358951 | HR-TB | lineage4 | None | ERR6359066 | HR-TB | lineage4 | None | ERR9119096 | Other | lineage4.3.3 | None | ERR9119508 | MDR-TB | lineage4.6.4 | None | ERR5908228 | Other | lineage4.3.3 | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR6358837 | HR-TB | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR8976043 | HR-TB | None | ERR9787336 | Other | lineage6 | None | SRR069981 | HR-TB | lineage2.2.2 | None | SRR069978 | Pre-XDR-TB | lineage2.2.2 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR069989 | HR-TB | lineage2 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1165423 | Other | lineage4.1.2.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR13423544 | Other | lineage4.5 | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR13837548 | Sensitive | lineage4.9 | None | SRR13861151 | RR-TB | lineage4.9 | None | SRR13837642 | RR-TB | lineage4.9 | None | SRR13861146 | Sensitive | lineage4.9 | None | SRR13861168 | RR-TB | lineage4.9 | None | SRR13861261 | Sensitive | lineage4.9 | None | SRR13861500 | RR-TB | lineage4.9 | None | SRR13861288 | Other | lineage4.9 | None | SRR13861305 | Other | lineage4.9 | None | SRR13861326 | Other | lineage4.9 | None | SRR13861322 | Other | lineage4.9 | None | SRR13861368 | RR-TB | lineage4.9 | None | SRR13861372 | Other | lineage4.9 | None | SRR13861424 | RR-TB | lineage4.9 | None | SRR13861428 | Other | lineage4.9 | None | SRR13861611 | Sensitive | lineage4.9 | None | SRR13861549 | RR-TB | lineage4.9 | None | SRR13861556 | Other | lineage4.9 | None | SRR13861510 | Other | lineage4.9 | None | SRR13861528 | HR-TB | lineage4.9 | None | SRR13861552 | Sensitive | lineage4.9 | None | SRR13861573 | Other | lineage4.9 | None | SRR6325445 | HR-TB | None | SRR13861699 | Sensitive | lineage4.9 | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR1640750 | HR-TB | None | SRR1791696 | Other | La1.8.1 | None | SRR3675558 | HR-TB | None | SRR3675482 | HR-TB | None | SRR3675383 | HR-TB | None | ERR1035239 | HR-TB | None | ERR161033 | HR-TB | None | SRR3675486 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3675545 | HR-TB | None | ERR212034 | HR-TB | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR216965 | HR-TB | lineage4.9 | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR3275215 | Other | lineage4.1.2.1 | nl | ERR2509673 | Other | lineage2.2.1 | None | ERR2229143 | Other | lineage4.1.1 | None | ERR245675 | Sensitive | lineage1.1.2 | None | ERR3275220 | Other | lineage3 | nl | ERR3275196 | Other | lineage2.2.1 | nl | ERR2693239 | HR-TB | None | SAMN02414850 | Other | lineage4.1.2.1 | None | ERR2446563 | Other | lineage2.2.1 | nl | ERR4821053 | Other | lineage3 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR2446118 | Other | lineage4.1.2.1 | nl | ERR278594 | HR-TB | None | ERR2446144 | Other | lineage3 | nl | SRR6046385 | Other | lineage4.9 | None | SRR6045952 | HR-TB | None | SRR6045033 | HR-TB | None | SRR6046015 | Other | lineage4.9 | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6325442 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6046514 | HR-TB | None | ERR2851356 | Sensitive | lineage4.9 | None | SRR6046482 | HR-TB | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6325448 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | ERR4872102 | MDR-TB | lineage4.6.4 | None | ERR3077978 | Other | lineage1.1 | None | SRR6831950 | Other | lineage4.3.3 | None | ERR323036 | HR-TB | None | ERR294248 | HR-TB | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR5311099 | HR-TB | None | ERR323041 | HR-TB | None | ERR5311081 | HR-TB | None | ERR5311090 | HR-TB | None | ERR323038 | HR-TB | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323055 | HR-TB | None | ERR323063 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1063855 | Other | lineage4 | None | ERR4821179 | Other | lineage4.1.2.1 | gb | ERR3283017 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3797016 | HR-TB | None | ERR3468544 | HR-TB | None | ERR3797083 | HR-TB | None | ERR3797060 | Other | La1.8.1 | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR4188350 | HR-TB | None | ERR473323 | HR-TB | lineage4.9 | None | ERR4769442 | HR-TB | lineage4 | None | ERR4769474 | HR-TB | lineage4 | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | ERR4769444 | HR-TB | lineage4.9 | None |
---|