Run ID: SRR13861288
Sample name:
Date: 03-04-2023 09:28:06
Number of reads: 3363544
Percentage reads mapped: 56.11
Strain: lineage4.9
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472307 | n.462C>T | non_coding_transcript_exon_variant | 0.15 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 6700 | c.-602T>C | upstream_gene_variant | 0.14 |
gyrA | 6778 | c.-524C>T | upstream_gene_variant | 0.13 |
gyrB | 6797 | p.Gly520Thr | missense_variant | 0.13 |
gyrA | 7018 | c.-284G>T | upstream_gene_variant | 1.0 |
gyrA | 7799 | c.498A>G | synonymous_variant | 0.16 |
gyrA | 8204 | c.903C>T | synonymous_variant | 0.14 |
gyrA | 8207 | c.906T>C | synonymous_variant | 0.14 |
gyrA | 8442 | c.1141C>T | synonymous_variant | 0.15 |
gyrA | 8537 | c.1236G>A | synonymous_variant | 0.15 |
gyrA | 8786 | c.1485T>C | synonymous_variant | 0.16 |
gyrA | 8796 | p.Ile499Val | missense_variant | 0.15 |
gyrA | 8810 | c.1509A>C | synonymous_variant | 0.14 |
gyrA | 8816 | c.1515C>T | synonymous_variant | 0.14 |
gyrA | 8852 | c.1551T>C | synonymous_variant | 0.14 |
gyrA | 8858 | c.1557T>C | synonymous_variant | 0.15 |
gyrA | 8867 | c.1566A>G | synonymous_variant | 0.15 |
gyrA | 8870 | c.1569G>C | synonymous_variant | 0.15 |
gyrA | 8873 | c.1572A>C | synonymous_variant | 0.15 |
gyrA | 8897 | c.1596T>C | synonymous_variant | 0.15 |
gyrA | 8903 | c.1602T>C | synonymous_variant | 0.16 |
gyrA | 8915 | c.1614A>G | synonymous_variant | 0.15 |
mshA | 576668 | c.1322dupA | frameshift_variant&stop_gained | 1.0 |
rpoB | 760184 | c.378A>G | synonymous_variant | 0.15 |
rpoB | 760196 | c.390C>G | synonymous_variant | 0.18 |
rpoB | 760223 | c.417T>C | synonymous_variant | 0.16 |
rpoB | 760235 | c.429T>C | synonymous_variant | 0.17 |
rpoB | 760283 | c.477G>C | synonymous_variant | 0.2 |
rpoB | 760307 | c.501T>C | synonymous_variant | 0.2 |
rpoB | 760328 | c.522G>C | synonymous_variant | 0.19 |
rpoB | 760331 | c.525G>C | synonymous_variant | 0.19 |
rpoB | 760337 | c.531C>G | synonymous_variant | 0.18 |
rpoB | 760340 | c.534G>C | synonymous_variant | 0.18 |
rpoB | 760361 | c.555T>C | synonymous_variant | 0.16 |
rpoB | 760376 | p.Asp190Glu | missense_variant | 0.17 |
rpoB | 760418 | c.612G>C | synonymous_variant | 0.15 |
rpoB | 760925 | c.1119T>C | synonymous_variant | 0.15 |
rpoB | 760928 | c.1122G>C | synonymous_variant | 0.15 |
rpoB | 760934 | c.1128C>T | synonymous_variant | 0.15 |
rpoB | 760985 | c.1179G>C | synonymous_variant | 0.14 |
rpoB | 760991 | c.1185G>C | synonymous_variant | 0.15 |
rpoB | 761015 | c.1209G>C | synonymous_variant | 0.16 |
rpoB | 761063 | c.1257C>G | synonymous_variant | 0.14 |
rpoB | 761094 | c.1288C>T | synonymous_variant | 0.14 |
rpoB | 761171 | c.1365C>T | synonymous_variant | 0.13 |
rpoB | 761222 | c.1416G>C | synonymous_variant | 0.14 |
rpoB | 761249 | c.1443A>G | synonymous_variant | 0.16 |
rpoB | 761255 | c.1449T>G | synonymous_variant | 0.16 |
rpoB | 761261 | c.1455G>T | synonymous_variant | 0.16 |
rpoB | 762185 | c.2379G>C | synonymous_variant | 0.14 |
rpoB | 762254 | c.2448T>C | synonymous_variant | 0.14 |
rpoC | 763456 | c.87A>G | synonymous_variant | 0.15 |
rpoC | 763468 | c.99G>C | synonymous_variant | 0.15 |
rpoC | 763486 | c.117T>C | synonymous_variant | 0.15 |
rpoC | 763528 | c.159G>A | synonymous_variant | 0.15 |
rpoC | 763546 | c.177A>G | synonymous_variant | 0.16 |
rpoC | 763594 | c.225C>T | synonymous_variant | 0.13 |
rpoC | 763633 | c.264T>C | synonymous_variant | 0.15 |
rpoC | 763636 | c.267T>C | synonymous_variant | 0.15 |
rpoC | 763642 | c.273G>C | synonymous_variant | 0.16 |
rpoC | 763658 | c.289_291delCTTinsTTG | synonymous_variant | 0.15 |
rpoC | 763675 | c.306C>G | synonymous_variant | 0.15 |
rpoC | 763696 | c.327T>C | synonymous_variant | 0.15 |
rpoC | 763702 | c.333C>G | synonymous_variant | 0.14 |
rpoC | 763723 | c.354G>C | synonymous_variant | 0.14 |
rpoC | 763744 | c.375G>C | synonymous_variant | 0.14 |
rpoC | 763780 | c.411C>G | synonymous_variant | 0.14 |
rpoC | 763801 | c.432C>G | synonymous_variant | 0.15 |
rpoC | 763807 | c.438T>C | synonymous_variant | 0.16 |
rpoC | 763819 | c.450G>C | synonymous_variant | 0.14 |
rpoC | 763858 | c.489A>G | synonymous_variant | 0.15 |
rpoC | 763872 | p.Gly168Ala | missense_variant | 0.15 |
rpoC | 763876 | p.Glu169Asp | missense_variant | 0.15 |
rpoC | 763879 | c.510A>G | synonymous_variant | 0.15 |
rpoC | 763888 | c.519G>C | synonymous_variant | 0.14 |
rpoC | 763919 | c.550C>T | synonymous_variant | 0.14 |
rpoC | 763933 | c.564C>T | synonymous_variant | 0.15 |
rpoC | 764005 | c.636G>C | synonymous_variant | 0.14 |
rpoC | 764011 | c.642T>C | synonymous_variant | 0.14 |
rpoC | 764040 | p.Ser224Asn | missense_variant | 0.14 |
rpoC | 764059 | c.690G>C | synonymous_variant | 0.14 |
rpoC | 764720 | c.1351C>T | synonymous_variant | 0.15 |
rpoC | 764752 | c.1383G>C | synonymous_variant | 0.16 |
rpoC | 764764 | c.1395T>C | synonymous_variant | 0.17 |
rpoC | 764791 | c.1422C>G | synonymous_variant | 0.18 |
rpoC | 764809 | c.1440C>T | synonymous_variant | 0.17 |
rpoC | 764812 | c.1443C>G | synonymous_variant | 0.17 |
rpoC | 764815 | c.1446A>G | synonymous_variant | 0.17 |
rpoC | 764824 | c.1455T>C | synonymous_variant | 0.17 |
rpoC | 764830 | c.1461C>G | synonymous_variant | 0.17 |
rpoC | 764858 | c.1489T>C | synonymous_variant | 0.16 |
rpoC | 764872 | c.1503A>G | synonymous_variant | 0.16 |
rpoC | 764893 | c.1524T>C | synonymous_variant | 0.14 |
rpoC | 765100 | c.1731G>C | synonymous_variant | 0.94 |
rpoC | 765658 | c.2289C>T | synonymous_variant | 0.17 |
rpoC | 765700 | c.2331T>C | synonymous_variant | 0.15 |
rpoC | 765734 | c.2365T>C | synonymous_variant | 0.14 |
rpoC | 765739 | c.2370G>C | synonymous_variant | 0.14 |
rpoC | 765751 | c.2382C>G | synonymous_variant | 0.15 |
rpoC | 765753 | p.Asp795Ala | missense_variant | 0.15 |
rpoC | 765772 | c.2403C>G | synonymous_variant | 0.14 |
rpoC | 765784 | c.2415C>G | synonymous_variant | 0.14 |
rpoC | 765796 | c.2427C>T | synonymous_variant | 0.15 |
rpoC | 765811 | c.2442T>C | synonymous_variant | 0.15 |
rpoC | 765814 | c.2445A>G | synonymous_variant | 0.15 |
rpoC | 765835 | c.2466C>T | synonymous_variant | 0.13 |
rpoC | 766390 | c.3021C>T | synonymous_variant | 0.13 |
rpoC | 766408 | c.3039C>T | synonymous_variant | 0.13 |
rpoC | 766426 | c.3057C>T | synonymous_variant | 0.15 |
rpoC | 766738 | c.3369G>T | synonymous_variant | 0.13 |
rpoC | 766750 | c.3381C>G | synonymous_variant | 0.13 |
rpoC | 766843 | c.3474T>C | synonymous_variant | 0.13 |
rpoC | 766861 | c.3492G>C | synonymous_variant | 0.15 |
rpoC | 766864 | c.3495G>C | synonymous_variant | 0.14 |
mmpL5 | 776059 | p.Val808Met | missense_variant | 0.9 |
rpsL | 781929 | p.Gly124Ser | missense_variant | 0.12 |
rplC | 800648 | c.-161A>C | upstream_gene_variant | 0.16 |
rplC | 800654 | c.-155T>C | upstream_gene_variant | 0.15 |
rplC | 800703 | c.-106T>C | upstream_gene_variant | 0.14 |
rplC | 800771 | c.-38C>T | upstream_gene_variant | 0.14 |
fbiC | 1303881 | c.951G>C | synonymous_variant | 0.16 |
fbiC | 1303884 | c.954T>G | synonymous_variant | 0.15 |
fbiC | 1303911 | c.981G>C | synonymous_variant | 0.16 |
fbiC | 1303914 | c.984C>G | synonymous_variant | 0.17 |
fbiC | 1303920 | c.990C>G | synonymous_variant | 0.15 |
fbiC | 1303923 | c.993C>T | synonymous_variant | 0.15 |
fbiC | 1303995 | c.1065C>T | synonymous_variant | 0.12 |
fbiC | 1304001 | c.1071C>G | synonymous_variant | 0.14 |
fbiC | 1304008 | c.1078T>C | synonymous_variant | 0.15 |
fbiC | 1304599 | p.Ile557Phe | missense_variant | 0.88 |
fbiC | 1304703 | c.1773C>G | synonymous_variant | 0.14 |
fbiC | 1304715 | c.1785G>C | synonymous_variant | 0.15 |
embR | 1417348 | c.-1A>T | upstream_gene_variant | 1.0 |
rrs | 1472969 | n.1124A>G | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472970 | n.1125C>G | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472977 | n.1132G>C | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472978 | n.1133T>C | non_coding_transcript_exon_variant | 0.16 |
rrs | 1473104 | n.1259C>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1473105 | n.1260G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1473631 | n.-27T>C | upstream_gene_variant | 1.0 |
rrl | 1474181 | n.524C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474249 | n.592G>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1474356 | n.699T>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474362 | n.705A>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474376 | n.719T>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475199 | n.1542G>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475206 | n.1549C>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1475209 | n.1552G>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475213 | n.1556C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475252 | n.1595C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475266 | n.1609T>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475273 | n.1616T>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475275 | n.1618C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475291 | n.1634A>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475313 | n.1656G>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475315 | n.1658A>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475333 | n.1676T>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475355 | n.1698C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475419 | n.1762C>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1475483 | n.1826C>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1475505 | n.1848G>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475526 | n.1869C>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1475599 | n.1942A>G | non_coding_transcript_exon_variant | 0.16 |
rrl | 1475608 | n.1951T>C | non_coding_transcript_exon_variant | 0.16 |
rrl | 1475638 | n.1981C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475642 | n.1985T>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475659 | n.2002G>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476086 | n.2429G>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476089 | n.2432T>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476095 | n.2438C>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476224 | n.2567A>G | non_coding_transcript_exon_variant | 0.16 |
rpsA | 1833667 | c.126C>G | synonymous_variant | 0.16 |
rpsA | 1833724 | c.183C>G | synonymous_variant | 0.14 |
rpsA | 1833727 | c.186G>C | synonymous_variant | 0.15 |
rpsA | 1833742 | c.201A>G | synonymous_variant | 0.15 |
rpsA | 1833745 | c.204G>C | synonymous_variant | 0.15 |
rpsA | 1833787 | c.246C>G | synonymous_variant | 0.14 |
rpsA | 1833790 | c.249T>A | synonymous_variant | 0.15 |
rpsA | 1833799 | c.258C>G | synonymous_variant | 0.16 |
rpsA | 1833811 | c.270G>C | synonymous_variant | 0.14 |
rpsA | 1833855 | p.Lys105Thr | missense_variant | 0.87 |
rpsA | 1833862 | c.321G>T | synonymous_variant | 0.13 |
rpsA | 1833874 | c.333T>C | synonymous_variant | 0.14 |
rpsA | 1834688 | p.Ser383Cys | missense_variant | 0.13 |
PPE35 | 2170030 | p.Met195Leu | missense_variant | 1.0 |
kasA | 2517947 | c.-168C>T | upstream_gene_variant | 0.14 |
kasA | 2518276 | p.Trp54* | stop_gained | 0.99 |
kasA | 2518352 | p.Met80Val | missense_variant | 1.0 |
kasA | 2518732 | c.618C>G | synonymous_variant | 0.14 |
kasA | 2518783 | c.669T>C | synonymous_variant | 0.16 |
kasA | 2518792 | c.678C>G | synonymous_variant | 0.16 |
kasA | 2518795 | c.681C>G | synonymous_variant | 0.16 |
eis | 2714478 | c.855C>A | synonymous_variant | 1.0 |
pepQ | 2860170 | c.248_249insA | frameshift_variant | 1.0 |
Rv2752c | 3065335 | p.Leu286Arg | missense_variant | 1.0 |
thyA | 3073977 | c.495A>G | synonymous_variant | 0.17 |
thyA | 3073989 | c.483T>C | synonymous_variant | 0.17 |
thyA | 3074001 | c.471C>G | synonymous_variant | 0.15 |
thyA | 3074004 | c.468T>C | synonymous_variant | 0.15 |
thyA | 3074010 | c.462C>G | synonymous_variant | 0.15 |
fbiB | 3641019 | c.-516G>A | upstream_gene_variant | 1.0 |
fbiB | 3641941 | p.Leu136Gln | missense_variant | 1.0 |
rpoA | 3877857 | c.651G>A | synonymous_variant | 0.15 |
rpoA | 3877866 | c.642G>C | synonymous_variant | 0.16 |
rpoA | 3877872 | c.636C>T | synonymous_variant | 0.15 |
rpoA | 3877875 | c.633T>G | synonymous_variant | 0.15 |
rpoA | 3877953 | c.555G>A | synonymous_variant | 0.14 |
rpoA | 3877962 | c.546G>T | synonymous_variant | 0.15 |
rpoA | 3877989 | c.519A>G | synonymous_variant | 0.14 |
rpoA | 3878001 | c.507A>G | synonymous_variant | 0.14 |
rpoA | 3878055 | c.453A>G | synonymous_variant | 0.14 |
rpoA | 3878067 | c.441C>G | synonymous_variant | 0.14 |
rpoA | 3878070 | c.438T>C | synonymous_variant | 0.14 |
rpoA | 3878082 | c.426T>C | synonymous_variant | 0.16 |
rpoA | 3878094 | c.414C>G | synonymous_variant | 0.15 |
rpoA | 3878313 | c.195G>C | synonymous_variant | 0.15 |
rpoA | 3878334 | c.174T>C | synonymous_variant | 0.14 |
rpoA | 3878337 | c.171T>C | synonymous_variant | 0.14 |
rpoA | 3878346 | c.162T>C | synonymous_variant | 0.14 |
rpoA | 3878364 | c.144A>G | synonymous_variant | 0.14 |
rpoA | 3878370 | c.138T>C | synonymous_variant | 0.14 |
rpoA | 3878376 | c.132G>C | synonymous_variant | 0.16 |
rpoA | 3878385 | c.123C>G | synonymous_variant | 0.14 |
clpC1 | 4038611 | c.2094C>T | synonymous_variant | 0.14 |
clpC1 | 4039481 | c.1224T>G | synonymous_variant | 0.14 |
clpC1 | 4039484 | c.1221T>G | synonymous_variant | 0.14 |
clpC1 | 4039517 | c.1188C>G | synonymous_variant | 0.14 |
clpC1 | 4039524 | p.Phe394Tyr | missense_variant | 0.16 |
clpC1 | 4039526 | c.1179G>C | synonymous_variant | 0.16 |
clpC1 | 4039553 | c.1152C>G | synonymous_variant | 0.14 |
clpC1 | 4039586 | c.1119G>C | synonymous_variant | 0.14 |
clpC1 | 4039610 | c.1095G>C | synonymous_variant | 0.18 |
clpC1 | 4039616 | c.1089G>C | synonymous_variant | 0.18 |
clpC1 | 4039622 | c.1083C>G | synonymous_variant | 0.18 |
clpC1 | 4039682 | c.1023C>G | synonymous_variant | 0.17 |
clpC1 | 4039685 | c.1020C>T | synonymous_variant | 0.18 |
clpC1 | 4039694 | c.1011G>C | synonymous_variant | 0.18 |
clpC1 | 4039724 | c.981A>G | synonymous_variant | 0.19 |
embC | 4241292 | p.Leu477Gln | missense_variant | 1.0 |
embC | 4242011 | p.Leu717Val | missense_variant | 1.0 |
embB | 4248241 | c.1728C>T | synonymous_variant | 0.15 |
embB | 4248265 | c.1752C>T | synonymous_variant | 0.13 |
embB | 4248720 | p.Gly736Ala | missense_variant | 1.0 |
embB | 4249469 | p.Leu986Met | missense_variant | 0.13 |
embB | 4249676 | p.Arg1055Cys | missense_variant | 1.0 |
aftB | 4267927 | p.Ala304Ser | missense_variant | 0.98 |