Rv0668 - c.2442T>C


Drug resistance types
55 Sensitive 5 RR-TB 215 HR-TB 29 MDR-TB 12 Pre-XDR-TB 0 XDR-TB 176 Other
lineage Counts
lineage Count
lineage1.1 1
lineage4 50
lineage4.9 54
201
lineage4.3.4.2.1 4
lineage5.2 2
lineage4.8 10
lineage2.2.1 31
lineage4.2.1.1 1
lineage4.1 4
lineage4.8.1 1
lineage3.1 4
lineage4.1.2.1 22
lineage4.1.2 2
lineage4.1.2.1;lineage2.2.1 1
lineage4.4.1.2 1
lineage4.3.4.1 2
lineage4.1.1.3 2
lineage2.2 7
La1.8.1 3
lineage4.6.1.1 3
La1 2
lineage4.6.2.2 3
lineage3 9
lineage4.1.3 2
lineage4;lineage3.1 1
La1.2 1
lineage1.1.2 5
lineage2 4
lineage1.2.2.2 1
lineage4.8;La3 2
lineage4.3.3 6
La1.8.2 1
lineage4.9.1 1
lineage4.3.4 2
lineage4.5 3
lineage4.1.2.1.1 1
lineage4.3.2 2
lineage4.3.2.1 1
lineage1.1.3.1 1
lineage4.1.1 3
lineage6 1
lineage6.1.3 1
lineage6.2.3 1
lineage2.2.2 1
lineage6.3.1 1
lineage2.2.1.2 2
lineage4.4.1.1 5
lineage2.2.1.1 4
lineage1.1.1 1
lineage2.1 3
lineage4.2.1 1
lineage7;lineage2.2.1.2 1
lineage9;lineage3.1 1
lineage2.2.1;La3 1
lineage6.3;lineage4.9;lineage2.1 1
lineage4.9;La3 1
lineage6.3;lineage2.2.1 1
lineage4.1.1.1 1
lineage3;lineage2.2.1 1
lineage4.9;lineage4.8.1;lineage4.1.1 1
lineage4;lineage1.1.2 1
lineage4.1.1.2 1
lineage4.2.2.2 1
lineage4;lineage1.1 1
lineage4.7 1
spoligotype Counts
spoligotype Count
None 492
Geographic prevalence
Country level data for this variant is available for 2 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR3077978 Other lineage1.1 None
ERR323037 HR-TB lineage4 None
ERR485006 HR-TB lineage4.9 None
ERR4831117 HR-TB None
ERR11466146 Other lineage4.3.4.2.1 None
ERR4872094 MDR-TB lineage5.2 None
SRR6789626 Other None
SRR6896147 Sensitive lineage4.8 None
ERR294248 HR-TB None
SRR6785267 Other lineage2.2.1 None
SRR6832178 HR-TB lineage4.2.1.1 None
SRR6832249 Other lineage2.2.1 None
SRR6785527 Sensitive lineage2.2.1 None
SRR6789624 MDR-TB lineage4.1 None
ERR294266 HR-TB None
ERR11465604 HR-TB lineage4.8.1 None
SRR6832787 RR-TB lineage2.2.1 None
ERR323034 HR-TB lineage3.1 None
ERR323036 HR-TB None
ERR502532 HR-TB None
ERR502889 Other None
ERR502908 HR-TB lineage2.2.1 None
ERR5311081 HR-TB None
ERR5311099 HR-TB None
ERR5311090 HR-TB None
SRR7496517 Other None
SRR7131023 Other lineage4.1.2.1 None
SRR8217918 HR-TB None
ERR323038 HR-TB None
SRR7496509 Other None
SRR7535086 Other None
SRR9970978 Sensitive lineage4.1.2 None
ERR323041 HR-TB None
ERR323044 HR-TB lineage4.3.4.2.1 None
ERR323045 HR-TB None
ERR323043 HR-TB None
ERR11488822 Pre-XDR-TB lineage4.1.2.1;lineage2.2.1 None
ERR323055 HR-TB None
ERR323054 HR-TB lineage3.1 None
ERR323056 HR-TB lineage4.4.1.2 None
ERR323063 HR-TB None
ERR323066 Sensitive lineage4 None
ERR11466499 Other lineage4.3.4.1 None
ERR11465025 Other lineage4.1.1.3 None
ERR323107 Other lineage4 None
ERR067699 HR-TB lineage4 None
ERR067681 HR-TB None
ERR1063883 Sensitive lineage4 None
ERR1035157 Other lineage4.9 None
ERR1063839 HR-TB lineage2.2 None
ERR1063855 Other lineage4 None
ERR1063857 HR-TB None
ERR1063862 HR-TB None
ERR1023295 HR-TB lineage4.1.2.1 None
ERR1034652 Other None
ERR11465352 Sensitive lineage4.3.4.1 None
ERR1063858 HR-TB None
ERR1063859 HR-TB None
ERR108125 Pre-XDR-TB lineage4.9 None
ERR3797023 HR-TB La1.8.1 None
ERR1199132 Sensitive lineage4.6.1.1 None
ERR133825 Sensitive lineage4 None
ERR133986 HR-TB None
ERR323115 Sensitive lineage4 None
ERR3283013 MDR-TB lineage4 None
ERR3283032 HR-TB None
ERR3283036 HR-TB None
ERR3439432 Other None
ERR3445504 HR-TB None
ERR3445502 HR-TB lineage4 None
ERR3445503 HR-TB None
ERR3468544 HR-TB None
ERR3797016 HR-TB None
ERR3797014 Other None
ERR11049020 Other lineage4.8 None
ERR3283010 Other La1 None
ERR3283017 HR-TB None
ERR3283021 HR-TB None
ERR3283025 HR-TB None
ERR3283024 Other None
ERR3283027 HR-TB None
ERR3283048 HR-TB lineage4.9 None
ERR3283058 Other lineage4.9 None
ERR3283055 HR-TB None
ERR3445501 HR-TB None
ERR3797017 Other None
ERR3797043 HR-TB None
ERR3797036 HR-TB None
ERR3797046 HR-TB None
ERR3797069 Other None
ERR3797047 HR-TB lineage4 None
ERR3797044 Other None
ERR3797061 Other None
ERR3797081 Sensitive lineage4 None
ERR3797082 Other lineage4.9 None
ERR3797086 Other lineage4.9 None
ERR3797083 HR-TB None
ERR3801503 Sensitive lineage4.6.2.2 None
ERR403298 HR-TB lineage4 None
ERR3804155 Other lineage4.1.2.1 None
ERR387051 HR-TB None
ERR400529 Other lineage3 None
ERR3804169 HR-TB lineage4.1.3 None
ERR405209 Sensitive lineage4 None
ERR4188350 HR-TB None
ERR405219 HR-TB lineage4;lineage3.1 None
ERR4769444 HR-TB lineage4.9 None
ERR4407463 HR-TB None
ERR473323 HR-TB lineage4.9 None
ERR4769442 HR-TB lineage4 None
ERR4407452 Sensitive lineage3 None
ERR473332 Other lineage4 None
ERR4769457 Other lineage4.9 None
ERR4769452 HR-TB None
ERR4769450 HR-TB None
ERR4769497 HR-TB La1.2 None
ERR4769474 HR-TB lineage4 None
ERR4797193 HR-TB lineage1.1.2 None
ERR4769521 HR-TB None
ERR4796472 Pre-XDR-TB lineage2.2.1 None
ERR4796929 Sensitive lineage4 None
ERR4797054 Pre-XDR-TB lineage2 None
ERR4797588 MDR-TB lineage3 None
ERR4797201 Other lineage1.2.2.2 None
ERR4798262 HR-TB La1 None
ERR4798139 Sensitive lineage1.1.2 None
ERR4799025 Pre-XDR-TB None
ERR4798406 HR-TB None
ERR4798493 MDR-TB lineage2.2.1 None
ERR4800341 Other lineage3 None
ERR4799478 Pre-XDR-TB lineage2.2.1 None
ERR4799513 HR-TB lineage2.2 None
ERR4810624 HR-TB lineage2.2 None
ERR12015083 Other lineage4.8;La3 None
ERR4811022 HR-TB None
ERR4810741 HR-TB None
ERR4811105 HR-TB None
ERR5908228 Other lineage4.3.3 None
ERR4811142 MDR-TB None
ERR4811493 HR-TB None
ERR5336148 Other None
ERR6358837 HR-TB None
ERR6358755 Other lineage4.6.1.1 None
ERR5917710 Other lineage4.1.2.1 None
ERR6140663 Other La1.8.2 None
ERR6866807 HR-TB lineage4 None
ERR6358991 HR-TB None
ERR6359066 HR-TB lineage4 None
ERR6358951 HR-TB lineage4 None
ERR6358979 Other None
ERR6359045 HR-TB None
ERR6359074 HR-TB lineage4.9 None
ERR6866410 Sensitive None
ERR6866547 Sensitive lineage4 None
ERR736835 HR-TB None
ERR702406 HR-TB None
ERR245758 Other lineage4.9.1 None
ERR736817 HR-TB lineage4.3.4 None
ERR736831 HR-TB lineage4.9 None
ERR736867 HR-TB None
ERR736856 HR-TB lineage4 None
ERR736872 Sensitive lineage4 None
ERR736875 HR-TB lineage4 None
ERR736874 HR-TB None
ERR752229 Other lineage4.5 None
ERR760733 MDR-TB lineage4.1.2.1.1 None
ERR176549 Other lineage4.3.4.2.1 None
ERR772255 MDR-TB lineage4.3.2 None
ERR8975532 HR-TB lineage4.3.2.1 None
ERR8479578 Sensitive lineage1.1.3.1 None
ERR9117805 Other lineage4.3.2 None
ERR8976043 HR-TB None
ERR9117709 HR-TB None
ERR9117721 HR-TB lineage1.1.2 None
ERR9786421 Other lineage4.1.2.1 None
ERR9119096 Other lineage4.3.3 None
ERR9119500 MDR-TB lineage5.2 None
ERR9786076 Sensitive lineage3 None
ERR9119669 HR-TB None
ERR9786604 Other None
ERR9786440 Other lineage4.1 None
ERR9786444 Sensitive lineage4.8 None
ERR9786515 Other lineage4.1.2.1 None
ERR9786569 Other lineage4.8 None
ERR9786611 HR-TB lineage4.1.3 None
ERR9786617 Other lineage4.1.1 None
ERR9786601 Other lineage4.1.2.1 None
ERR9786642 Other lineage4.1.2.1 None
ERR9786627 Other lineage4.1.2.1 None
ERR9786671 Other None
ERR9786645 Other lineage4.6.2.2 None
ERR9786682 Other lineage4.1.2.1 None
ERR9786694 Other lineage4.1.2.1 None
ERR9786711 Sensitive lineage4.6.2.2 None
ERR9787165 Other lineage6 None
ERR9787153 Other lineage6.1.3 None
ERR9786986 HR-TB lineage4.1.2.1 None
ERR9787061 Sensitive lineage6.2.3 None
SRR069978 Pre-XDR-TB lineage2.2.2 None
ERR9787139 Other lineage6.3.1 None
ERR987765 Sensitive lineage4.6.1.1 None
ERR9787197 Other None
SRR069989 HR-TB lineage2 None
SRR1162740 Other lineage4.1.2.1 None
SRR10808399 Sensitive lineage4 None
SRR10808668 Sensitive lineage2.2.1 None
SRR10809074 Sensitive lineage4 None
SRR10808805 Sensitive None
SRR1162864 HR-TB lineage4.1.2.1 None
SRR1169194 Other None
SRR1165423 Other lineage4.1.2.1 None
SRR1165506 Other lineage4.1.2.1 None
SRR1165584 Other lineage4.1.2.1 None
SRR1172796 Sensitive lineage2.2.1.2 None
SRR1172234 Other None
SRR1172728 MDR-TB None
SRR1172844 MDR-TB lineage4.4.1.1 None
SRR1172817 HR-TB None
SRR1173153 HR-TB None
SRR1172857 MDR-TB None
SRR1172951 Other None
SRR1173118 Other None
SRR1173384 Other lineage4 None
SRR1173363 HR-TB None
SRR1173629 Other None
SRR1173400 Other None
SRR1173562 HR-TB lineage4 None
SRR1173453 Other lineage4.4.1.1 None
SRR1173484 Other lineage4 None
SRR1173633 HR-TB lineage4.9 None
SRR1173706 Other lineage4.9 None
SRR1173788 Other None
SRR1173767 HR-TB lineage4.4.1.1 None
SRR1173778 Other None
SRR1175049 RR-TB None
SRR1180172 Other lineage2.2.1 None
SRR1175074 MDR-TB None
SRR1175127 Sensitive lineage2.2.1.2 None
SRR1180147 Other lineage2.2.1.1 None
SRR1181091 Other lineage2.2.1.1 None
SRR1180270 Other lineage2.2.1 None
SRR1183106 Other lineage2.2.1.1 None
SRR1184024 Other lineage2.2.1.1 None
SRR1183145 Other lineage2.2.1 None
SRR1183144 Other lineage2.2.1 None
SRR1184294 HR-TB None
SRR1184298 Pre-XDR-TB lineage4.3.3 None
SRR1184381 MDR-TB None
SRR1184312 HR-TB lineage2.2.1 None
SRR1184346 HR-TB lineage3.1 None
SRR1184372 MDR-TB None
SRR1196494 MDR-TB None
SRR1184388 Other None
SRR1184380 HR-TB None
SRR1196474 HR-TB lineage3.1 None
SRR1196546 HR-TB None
SRR1196566 HR-TB None
SRR1196768 MDR-TB None
SRR1196571 Pre-XDR-TB lineage4.3.3 None
SRR1196677 HR-TB lineage2 None
SRR11972245 Sensitive lineage1.1.2 None
SRR11972367 Sensitive lineage2.2.1 None
SRR12416824 HR-TB None
SRR12142339 HR-TB lineage2.2.1 None
SRR12142341 HR-TB None
SRR12416840 MDR-TB lineage4.9 None
SRR13837699 Sensitive lineage4.9 None
SRR13423544 Other lineage4.5 None
SRR13423649 Sensitive lineage2.2.1 None
SRR13837890 Sensitive lineage4.9 None
SRR13861510 Other lineage4.9 None
SRR13861153 Other lineage4.9 None
SRR13861288 Other lineage4.9 None
SRR13861305 Other lineage4.9 None
SRR13861381 MDR-TB lineage4.9 None
SRR13861500 RR-TB lineage4.9 None
SRR13861646 Other lineage4.9 None
SRR13861573 Other lineage4.9 None
SRR13861611 Sensitive lineage4.9 None
SRR13861596 Other lineage4.9 None
SRR13861720 Other lineage4.9 None
SRR13861660 Sensitive lineage4.9 None
SRR13861663 Sensitive lineage4.9 None
SRR14782405 HR-TB None
SRR14066533 Sensitive lineage1.1.1 None
SRR14801749 Sensitive None
SRR1710057 Other lineage2.1 None
SRR14802079 MDR-TB lineage4.2.1 None
SRR15368973 Other None
SRR25827687 MDR-TB lineage1.1.2 None
SRR1640750 HR-TB None
SRR17658565 Other lineage3 None
SRR1791696 Other La1.8.1 None
SRR18003019 Other lineage2.2.1 None
SRR19303884 HR-TB None
SRR18549032 HR-TB lineage7;lineage2.2.1.2 None
SRR19295647 Sensitive lineage4.9 None
SRR18213713 HR-TB lineage4.5 None
SRR18910194 HR-TB lineage2.2 None
SRR20969677 HR-TB lineage2 None
SRR19304036 HR-TB None
SRR20969708 HR-TB lineage2.2 None
SRR20969731 Other lineage2.2.1 None
SRR5709967 MDR-TB lineage2.2.1 None
SRR20970016 Other lineage2.2 None
SRR25827418 Pre-XDR-TB lineage9;lineage3.1 None
ERR11068570 Other lineage4 None
SRR25827682 Other None
ERR11081258 Other lineage4.8 None
ERR11081257 Other lineage4.8 None
SRR8692790 RR-TB lineage4 None
ERR11081864 Other lineage3 None
SRR8692807 Other lineage4.9 None
SRR8692822 Other lineage4.9 None
SRR26937071 MDR-TB lineage2.2.1;La3 None
SRR8692879 HR-TB lineage4.9 None
SRR8692905 HR-TB None
SRR8692782 Other lineage4.9 None
SRR26399239 Sensitive lineage4.9 None
SRR23961558 Other lineage6.3;lineage4.9;lineage2.1 None
SRR26937107 MDR-TB lineage2.2.1 None
SRR26159043 Other lineage4.9 None
SRR26399973 Other lineage4.9;La3 None
SRR28119811 Other lineage6.3;lineage2.2.1 None
SRR25827507 MDR-TB lineage4.1.1.1 None
ERR4815604 HR-TB None
SRR25827497 Pre-XDR-TB lineage3;lineage2.2.1 None
SRR3675464 HR-TB lineage4.1 None
ERR176778 HR-TB None
ERR176779 HR-TB None
ERR4813861 Other lineage4.3.3 None
ERR1035239 HR-TB None
SRR6325445 HR-TB None
ERR176793 Other lineage4.1.1 None
SRR3675465 HR-TB None
SRR3675482 HR-TB None
ERR158583 HR-TB None
SAMN02585910 Other lineage2.2.1 None
ERR779852 Sensitive lineage4.9;lineage4.8.1;lineage4.1.1 None
ERR4814352 HR-TB lineage2.2.1 None
SRR3675486 HR-TB None
ERR161033 HR-TB None
ERR161039 Sensitive lineage4.3.4 None
SRR3675488 HR-TB None
SRR3416776 Other lineage2.1 None
ERR181744 HR-TB None
SRR3675502 Other None
SRR3675222 Other None
SRR3675221 HR-TB None
SRR3675236 HR-TB None
SRR3675501 HR-TB None
SRR3675284 HR-TB lineage4.9 None
ERR176518 Sensitive lineage4.3.4.2.1 None
SRR3675234 Other None
SRR3675232 Other lineage4.1.2.1 None
ERR181824 HR-TB lineage4 None
SRR3675270 HR-TB None
SRR3675280 HR-TB lineage4.9 None
SRR3675311 Other None
ERR181887 HR-TB None
ERR176651 HR-TB None
SRR3675312 HR-TB lineage4 None
SRR3675456 HR-TB None
SRR3675383 HR-TB None
ERR4815752 Other lineage4.9 None
SRR3675509 Other lineage4.9 None
ERR2229542 Other lineage4.8 None
ERR2027263 Other lineage4 None
ERR4816999 Other None
ERR4816151 Other lineage4.8 None
SRR3675545 HR-TB None
SRR3675550 Other None
SRR5341422 HR-TB lineage2.1 None
ERR4817060 RR-TB None
ERR212034 HR-TB None
SRR3675555 HR-TB None
SRR3675558 HR-TB None
SRR3675574 HR-TB None
ERR212125 HR-TB lineage4 None
ERR212123 Other None
SRR3675572 Other None
SRR3742665 HR-TB None
ERR212121 HR-TB None
ERR212138 HR-TB lineage4 None
SRR3675571 HR-TB None
ERR4816466 HR-TB None
ERR216965 HR-TB lineage4.9 None
ERR4816551 HR-TB lineage4.1.1.3 None
ERR4816559 MDR-TB lineage4.4.1.1 None
ERR4817692 HR-TB lineage4;lineage1.1.2 None
ERR4816585 Other lineage2.2 None
ERR4816656 HR-TB None
ERR4817735 Other lineage4.8 None
ERR4817896 HR-TB lineage2.2.1 None
ERR4817893 Other lineage4.8;La3 None
ERR553132 MDR-TB lineage4.1.2.1 None
ERR4818252 Other lineage4.1.1.2 None
ERR4818021 Other La1.8.1 None
ERR2513173 Sensitive lineage4.1.2 None
ERR3275196 Other lineage2.2.1 nl
ERR2229143 Other lineage4.1.1 None
SRR7496472 Other None
ERR2446566 Other lineage4.1 None
ERR1035162 Other None
ERR234659 HR-TB None
ERR4818929 HR-TB None
ERR2513470 Other lineage4.2.2.2 None
SRR5341400 HR-TB lineage4 None
ERR4818607 Sensitive lineage4.9 None
ERR4818615 Other None
SRR5007188 Other lineage4 None
SRR5153091 HR-TB lineage4.3.3 None
ERR4819280 Sensitive lineage4 None
ERR4820854 Other lineage4.1.2.1 None
SRR5341373 HR-TB lineage4 None
SRR5341418 Other None
ERR4819322 Other lineage4;lineage1.1 None
SRR5341456 Other None
SRR5341412 Pre-XDR-TB lineage3 None
ERR2514327 HR-TB lineage4.8 None
SRR5341432 HR-TB lineage4 None
ERR2514692 Other None
SAMN02414850 Other lineage4.1.2.1 None
ERR1035138 MDR-TB None
ERR4819781 Other lineage2.2.1 None
SRR5341293 HR-TB lineage4 None
ERR4819932 Other lineage4.7 None
SRR5341302 HR-TB None
SRR5341313 HR-TB None
ERR6359082 Other lineage4.9 None
SRR5341315 Sensitive None
SRR5341333 HR-TB None
ERR2693239 HR-TB None
ERR2446563 Other lineage2.2.1 nl
ERR2693231 Other None
SRR5341330 HR-TB None
ERR2693238 HR-TB lineage4.9 None
ERR4821053 Other lineage3 None
ERR2693230 Other None
SRR6046210 Other lineage4 None
ERR2693257 Other None
ERR2693254 Other None
SRR6045503 HR-TB None
SRR6045526 HR-TB None
SRR6045519 HR-TB None
SRR5535933 HR-TB None
SRR6046141 Other lineage4.9 None
ERR4821655 Sensitive lineage4 None
SRR6045555 HR-TB None
ERR2660539 Other lineage4.9 None
ERR278594 HR-TB None
SRR6045832 HR-TB lineage4.9 None
SRR6045795 HR-TB lineage2.2.1 None
SRR6046133 HR-TB None
SRR6044790 HR-TB None
SRR6045892 Sensitive None
SRR6044855 Other lineage4.9 None
SRR6044835 Sensitive lineage4 None
SRR6045217 Other lineage4 None
SRR6044876 Sensitive lineage4 None
SRR6045053 Other None
SRR6044890 Other lineage4.9 None
SRR6045952 HR-TB None
SRR6046066 HR-TB None
SRR6046046 Other None
SRR6325442 HR-TB None
SRR6045327 HR-TB None
SRR6046305 Other lineage4.9 None
SRR6046259 Sensitive lineage4.9 None
SRR6325444 HR-TB None
SRR6046362 HR-TB None
SRR6046299 HR-TB None
SRR6046382 HR-TB lineage2.2.1 None
SRR6046385 Other lineage4.9 None
SRR6046492 Other None
ERR4830353 Other None
SRR6046482 HR-TB None
SRR6046397 Other None
ERR2851356 Sensitive lineage4.9 None
SRR6046460 HR-TB None
SRR6046521 Other lineage4.4.1.1 None
SRR6046514 HR-TB None
SRR6325448 HR-TB None
SRR6046540 HR-TB None
SRR6046594 HR-TB lineage4 None
SRR6046644 HR-TB None
SRR6325447 HR-TB None
SRR6046878 HR-TB lineage4 None
SRR6458421 MDR-TB lineage2.2.1 None
SRR6458423 HR-TB lineage2.2.1 None
SRR6397654 HR-TB lineage4.1.2.1 None
SRR6046824 HR-TB None