TB-Profiler result

Run: SRR11972367
Summary

Run ID: SRR11972367

Sample name:

Date: 03-04-2023 05:38:50

Number of reads: 728322

Percentage reads mapped: 73.78

Strain: lineage2.2.1

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage2 East-Asian Beijing RD105 1.0
lineage2.2 East-Asian (Beijing) Beijing-RD207 RD105;RD207 1.0
lineage2.2.1 East-Asian (Beijing) Beijing-RD181 RD105;RD207;RD181 0.97
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6130 c.891T>C synonymous_variant 0.15
gyrB 6157 c.918C>T synonymous_variant 0.19
gyrB 6160 c.921C>G synonymous_variant 0.19
gyrB 6169 c.930C>G synonymous_variant 0.32
gyrB 6172 c.933C>T synonymous_variant 0.32
gyrB 6181 c.942C>A synonymous_variant 0.35
gyrB 6202 c.963C>T synonymous_variant 0.39
gyrB 6203 p.Ser322Ala missense_variant 0.4
gyrB 6208 c.969G>C synonymous_variant 0.4
gyrB 6242 p.Arg335Lys missense_variant 0.15
gyrA 6403 c.-899T>C upstream_gene_variant 0.13
gyrA 6427 c.-875T>C upstream_gene_variant 0.19
gyrA 6430 c.-872A>G upstream_gene_variant 0.19
gyrA 6475 c.-827C>A upstream_gene_variant 0.16
gyrA 6478 c.-824G>C upstream_gene_variant 0.17
gyrA 6481 c.-821G>C upstream_gene_variant 0.17
gyrA 6484 c.-818A>G upstream_gene_variant 0.17
gyrA 6487 c.-815C>A upstream_gene_variant 0.24
gyrA 6490 c.-812T>C upstream_gene_variant 0.24
gyrA 6496 c.-806G>C upstream_gene_variant 0.26
gyrA 6499 c.-803A>C upstream_gene_variant 0.25
gyrA 6508 c.-794A>G upstream_gene_variant 0.21
gyrA 6511 c.-791A>T upstream_gene_variant 0.21
gyrA 6547 c.-755T>C upstream_gene_variant 0.21
gyrA 6556 c.-746C>G upstream_gene_variant 0.21
gyrA 6568 c.-734C>G upstream_gene_variant 0.19
gyrA 6571 c.-731T>C upstream_gene_variant 0.15
gyrA 6577 c.-725T>C upstream_gene_variant 0.23
gyrA 6583 c.-719G>C upstream_gene_variant 0.29
gyrA 6592 c.-710C>T upstream_gene_variant 0.33
gyrA 6598 c.-704C>G upstream_gene_variant 0.25
gyrA 6637 c.-665T>G upstream_gene_variant 0.14
gyrA 6640 c.-662A>C upstream_gene_variant 0.14
gyrA 6655 c.-647T>C upstream_gene_variant 0.22
gyrA 6673 c.-629A>C upstream_gene_variant 0.19
gyrA 6676 c.-626T>G upstream_gene_variant 0.21
gyrA 6680 c.-622C>T upstream_gene_variant 0.18
gyrA 6700 c.-602T>C upstream_gene_variant 0.27
gyrA 6703 c.-599G>C upstream_gene_variant 0.27
gyrA 6709 c.-593A>G upstream_gene_variant 0.34
gyrA 6727 c.-575G>C upstream_gene_variant 0.3
gyrA 6730 c.-572A>G upstream_gene_variant 0.35
gyrA 6742 c.-560A>G upstream_gene_variant 0.29
gyrA 6745 c.-557T>C upstream_gene_variant 0.26
gyrA 6751 c.-551G>C upstream_gene_variant 0.21
gyrA 6760 c.-542G>C upstream_gene_variant 0.26
gyrA 6772 c.-530C>G upstream_gene_variant 0.31
gyrA 6775 c.-527G>C upstream_gene_variant 0.31
gyrA 6778 c.-524C>T upstream_gene_variant 0.31
gyrA 6787 c.-515G>A upstream_gene_variant 0.23
gyrA 6793 c.-509T>C upstream_gene_variant 0.26
gyrB 6797 p.Gly520Ser missense_variant 0.23
gyrA 6811 c.-491C>T upstream_gene_variant 0.26
gyrA 6841 c.-461T>C upstream_gene_variant 0.22
gyrA 6844 c.-458T>C upstream_gene_variant 0.22
gyrA 6853 c.-449A>G upstream_gene_variant 0.18
gyrA 6856 c.-446T>C upstream_gene_variant 0.18
gyrA 6859 c.-443T>C upstream_gene_variant 0.15
gyrA 6862 c.-440C>G upstream_gene_variant 0.18
gyrA 6869 c.-433T>C upstream_gene_variant 0.21
gyrA 6872 c.-430T>C upstream_gene_variant 0.21
gyrA 6878 c.-424T>C upstream_gene_variant 0.24
gyrA 6881 c.-421T>C upstream_gene_variant 0.24
gyrA 6916 c.-386G>C upstream_gene_variant 0.22
gyrB 6966 p.Ser576Thr missense_variant 0.18
gyrA 6970 c.-332C>T upstream_gene_variant 0.22
gyrA 6976 c.-326A>G upstream_gene_variant 0.23
gyrA 6982 c.-320A>C upstream_gene_variant 0.24
gyrA 6994 c.-308C>T upstream_gene_variant 0.24
gyrA 6997 c.-305G>A upstream_gene_variant 0.21
gyrA 7018 c.-284G>C upstream_gene_variant 0.21
gyrA 7021 c.-281G>C upstream_gene_variant 0.21
gyrB 7023 p.Leu595Arg missense_variant 0.21
gyrA 7030 c.-272C>G upstream_gene_variant 0.23
gyrA 7033 c.-269G>C upstream_gene_variant 0.23
gyrB 7046 p.Lys603Val missense_variant 0.16
gyrB 7051 p.Glu604Asp missense_variant 0.16
gyrA 7060 c.-242T>C upstream_gene_variant 0.22
gyrA 7078 c.-224A>G upstream_gene_variant 0.22
gyrA 7081 c.-221T>C upstream_gene_variant 0.2
gyrA 7084 c.-218A>G upstream_gene_variant 0.21
gyrA 7093 c.-209T>C upstream_gene_variant 0.19
gyrA 7132 c.-170T>G upstream_gene_variant 0.14
gyrA 7141 c.-161T>C upstream_gene_variant 0.14
gyrA 7144 c.-158A>G upstream_gene_variant 0.16
gyrA 7147 c.-155G>C upstream_gene_variant 0.16
gyrA 7162 c.-140C>G upstream_gene_variant 0.25
gyrA 7165 c.-137C>A upstream_gene_variant 0.15
gyrA 7174 c.-128C>T upstream_gene_variant 0.15
gyrA 7177 c.-125G>A upstream_gene_variant 0.24
gyrA 7178 c.-124T>C upstream_gene_variant 0.24
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7526 c.225G>A synonymous_variant 0.15
gyrA 7532 c.231T>C synonymous_variant 0.16
gyrA 7541 c.240C>G synonymous_variant 0.15
gyrA 7569 p.Ala90Ser missense_variant 0.17
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 7592 c.291G>C synonymous_variant 0.19
gyrA 7595 c.294C>G synonymous_variant 0.2
gyrA 7607 c.306C>G synonymous_variant 0.17
gyrA 7631 c.330G>C synonymous_variant 0.19
gyrA 7637 c.336C>T synonymous_variant 0.19
gyrA 7652 c.351C>T synonymous_variant 0.15
gyrA 7763 c.462T>G synonymous_variant 0.13
gyrA 7769 c.468C>T synonymous_variant 0.13
gyrA 7775 c.474C>G synonymous_variant 0.14
gyrA 7784 c.483A>G synonymous_variant 0.15
gyrA 7793 c.492G>C synonymous_variant 0.17
gyrA 7796 c.495G>T synonymous_variant 0.15
gyrA 7814 c.513C>G synonymous_variant 0.18
gyrA 7823 c.522G>T synonymous_variant 0.17
gyrA 7832 c.531G>T synonymous_variant 0.16
gyrA 7835 c.534A>G synonymous_variant 0.16
gyrA 8294 c.993T>C synonymous_variant 0.2
gyrA 8318 c.1017C>G synonymous_variant 0.15
gyrA 8354 c.1053G>C synonymous_variant 0.18
gyrA 8357 c.1056G>A synonymous_variant 0.18
gyrA 8375 c.1074G>C synonymous_variant 0.16
gyrA 8442 c.1141C>T synonymous_variant 0.15
gyrA 8453 c.1152A>C synonymous_variant 0.22
gyrA 8462 c.1161A>G synonymous_variant 0.17
gyrA 8471 c.1170T>C synonymous_variant 0.16
gyrA 8579 c.1278C>T synonymous_variant 0.19
gyrA 8597 c.1296C>G synonymous_variant 0.22
gyrA 8603 c.1302A>C synonymous_variant 0.21
gyrA 8609 c.1308G>C synonymous_variant 0.21
gyrA 8612 c.1311C>T synonymous_variant 0.2
gyrA 8619 c.1318T>C synonymous_variant 0.23
gyrA 8624 c.1323G>C synonymous_variant 0.23
gyrA 8627 c.1326C>G synonymous_variant 0.24
gyrA 8630 c.1329G>C synonymous_variant 0.25
gyrA 8633 c.1332C>T synonymous_variant 0.25
gyrA 8636 c.1335A>C synonymous_variant 0.24
gyrA 8672 c.1371A>G synonymous_variant 0.25
gyrA 8693 c.1392T>C synonymous_variant 0.22
gyrA 8696 c.1395G>C synonymous_variant 0.19
gyrA 8699 c.1398A>G synonymous_variant 0.19
gyrA 8711 c.1410A>C synonymous_variant 0.15
gyrA 8714 c.1413A>G synonymous_variant 0.15
gyrA 8717 c.1416C>G synonymous_variant 0.17
gyrA 8723 c.1422G>C synonymous_variant 0.13
gyrA 8731 p.Gly477Ala missense_variant 0.15
gyrA 8762 c.1461G>C synonymous_variant 0.17
gyrA 8767 p.Arg489Lys missense_variant 0.18
gyrA 8769 p.His490Tyr missense_variant 0.18
gyrA 8777 c.1476C>T synonymous_variant 0.16
gyrA 8783 c.1482G>C synonymous_variant 0.17
gyrA 8786 c.1485T>G synonymous_variant 0.18
gyrA 8801 c.1500G>C synonymous_variant 0.16
gyrA 8804 c.1503C>G synonymous_variant 0.17
gyrA 8810 c.1509A>C synonymous_variant 0.16
gyrA 8852 c.1551T>C synonymous_variant 0.19
gyrA 8858 c.1557T>G synonymous_variant 0.23
gyrA 8867 c.1566A>G synonymous_variant 0.2
gyrA 8870 c.1569G>C synonymous_variant 0.15
gyrA 8876 c.1575C>T synonymous_variant 0.18
gyrA 8885 c.1584C>G synonymous_variant 0.19
gyrA 8900 c.1599G>C synonymous_variant 0.23
gyrA 8903 c.1602T>C synonymous_variant 0.23
gyrA 8915 c.1614A>G synonymous_variant 0.24
gyrA 8918 c.1617C>T synonymous_variant 0.16
gyrA 8924 c.1623C>T synonymous_variant 0.23
gyrA 8930 c.1629C>A synonymous_variant 0.25
gyrA 8939 c.1638T>C synonymous_variant 0.28
gyrA 8945 c.1644G>C synonymous_variant 0.29
gyrA 8946 c.1645T>C synonymous_variant 0.29
gyrA 8967 p.Ala556Asn missense_variant 0.32
gyrA 8981 c.1680G>C synonymous_variant 0.35
gyrA 8996 c.1695T>C synonymous_variant 0.27
gyrA 8998 p.Leu566Trp missense_variant 0.26
gyrA 9014 c.1713C>G synonymous_variant 0.21
gyrA 9017 c.1716C>G synonymous_variant 0.2
gyrA 9023 c.1722A>C synonymous_variant 0.16
gyrA 9026 c.1725G>C synonymous_variant 0.12
gyrA 9029 c.1728T>C synonymous_variant 0.14
gyrA 9242 c.1941A>C synonymous_variant 0.13
gyrA 9296 c.1995T>C synonymous_variant 0.16
gyrA 9299 c.1998G>C synonymous_variant 0.17
gyrA 9302 c.2001C>G synonymous_variant 0.17
gyrA 9304 p.Gly668Glu missense_variant 1.0
gyrA 9323 c.2022C>G synonymous_variant 0.15
fgd1 491068 c.286C>T synonymous_variant 0.15
fgd1 491076 c.294G>C synonymous_variant 0.18
fgd1 491077 p.Asn99Asp missense_variant 0.18
fgd1 491082 c.300T>C synonymous_variant 0.17
fgd1 491083 p.Val101Ile missense_variant 0.17
fgd1 491091 c.309T>C synonymous_variant 0.18
fgd1 491094 c.312C>G synonymous_variant 0.19
fgd1 491115 c.333G>C synonymous_variant 0.17
fgd1 491121 c.339A>G synonymous_variant 0.17
fgd1 491127 c.345C>G synonymous_variant 0.17
fgd1 491144 p.Ala121Asp missense_variant 0.16
fgd1 491490 c.708C>T synonymous_variant 0.2
fgd1 491496 c.714C>T synonymous_variant 0.2
fgd1 491500 p.Glu240Lys missense_variant 0.21
fgd1 491508 c.726A>G synonymous_variant 0.31
fgd1 491512 p.Asn244Glu missense_variant 0.31
fgd1 491526 c.744T>C synonymous_variant 0.45
fgd1 491532 c.750G>T synonymous_variant 0.5
fgd1 491538 c.756G>C synonymous_variant 0.5
fgd1 491542 c.760T>C synonymous_variant 0.5
fgd1 491547 c.765A>C synonymous_variant 0.5
fgd1 491550 c.768T>C synonymous_variant 0.5
fgd1 491569 p.Asp263Asn missense_variant 0.56
fgd1 491577 c.795G>C synonymous_variant 0.5
fgd1 491610 c.828A>C synonymous_variant 0.22
fgd1 491616 c.834A>G synonymous_variant 0.22
fgd1 491742 c.960T>C synonymous_variant 1.0
mshA 575803 c.456C>T synonymous_variant 0.16
mshA 575809 c.462C>T synonymous_variant 0.14
mshA 575907 p.Ala187Val missense_variant 0.88
mshA 575926 c.579A>C synonymous_variant 0.12
mshA 576066 p.Pro240Leu missense_variant 0.2
ccsA 620625 p.Ile245Met missense_variant 1.0
rpoB 760112 c.306T>C synonymous_variant 0.17
rpoB 760118 c.312T>G synonymous_variant 0.17
rpoB 760121 c.315T>C synonymous_variant 0.17
rpoB 760130 p.Asp108Glu missense_variant 0.16
rpoB 760139 c.333A>G synonymous_variant 0.21
rpoB 760142 c.336C>G synonymous_variant 0.27
rpoB 760181 c.375T>G synonymous_variant 0.28
rpoB 760184 c.378A>G synonymous_variant 0.27
rpoB 760235 c.429T>C synonymous_variant 0.37
rpoB 760244 c.438G>C synonymous_variant 0.47
rpoB 760253 c.447T>C synonymous_variant 0.45
rpoB 760283 c.477G>C synonymous_variant 0.41
rpoB 760298 c.492G>C synonymous_variant 0.39
rpoB 760310 c.504G>C synonymous_variant 0.33
rpoB 760316 c.510C>G synonymous_variant 0.3
rpoB 760317 c.511_512delAGinsTC synonymous_variant 0.27
rpoB 760328 c.522G>C synonymous_variant 0.42
rpoB 760331 c.525G>C synonymous_variant 0.38
rpoB 760357 p.Thr184Ser missense_variant 0.32
rpoB 760361 c.555T>C synonymous_variant 0.32
rpoB 760376 p.Asp190Glu missense_variant 0.32
rpoB 760407 p.Ser201Gly missense_variant 0.16
rpoB 760430 c.624T>C synonymous_variant 0.15
rpoB 760457 c.651C>T synonymous_variant 0.28
rpoB 760463 c.657C>T synonymous_variant 0.28
rpoB 760475 c.669A>G synonymous_variant 0.26
rpoB 760478 c.672C>T synonymous_variant 0.24
rpoB 760481 c.675G>T synonymous_variant 0.23
rpoB 760484 c.678A>G synonymous_variant 0.23
rpoB 760502 c.696C>G synonymous_variant 0.26
rpoB 760522 p.Ser239Asn missense_variant 0.29
rpoB 760532 c.726T>C synonymous_variant 0.19
rpoB 760535 c.729C>G synonymous_variant 0.2
rpoB 760541 c.735G>C synonymous_variant 0.18
rpoB 760547 c.741G>C synonymous_variant 0.19
rpoB 760561 c.757_758delCG frameshift_variant 0.21
rpoB 760567 p.Ser254Trp missense_variant 0.21
rpoB 760568 c.762_763insGC frameshift_variant 0.21
rpoB 760591 p.Val262Ala missense_variant 0.33
rpoB 760646 c.840C>G synonymous_variant 0.24
rpoB 760655 c.849A>G synonymous_variant 0.36
rpoB 760661 c.855A>C synonymous_variant 0.37
rpoB 760670 c.864G>C synonymous_variant 0.29
rpoB 760674 c.868T>C synonymous_variant 0.29
rpoB 760679 c.873A>G synonymous_variant 0.29
rpoB 760683 c.877_879delTTGinsCTT synonymous_variant 0.25
rpoB 760703 c.897C>T synonymous_variant 0.23
rpoB 760724 c.918T>C synonymous_variant 0.15
rpoB 760730 c.924T>C synonymous_variant 0.17
rpoB 760736 c.930C>G synonymous_variant 0.15
rpoB 760916 c.1110C>T synonymous_variant 0.15
rpoB 760919 c.1113C>T synonymous_variant 0.16
rpoB 761015 c.1209G>C synonymous_variant 0.19
rpoB 761027 c.1221A>G synonymous_variant 0.16
rpoB 761036 c.1230G>C synonymous_variant 0.16
rpoB 761037 c.1231T>C synonymous_variant 0.16
rpoB 761051 c.1245G>T synonymous_variant 0.14
rpoB 761054 c.1248G>C synonymous_variant 0.14
rpoB 761057 c.1251G>C synonymous_variant 0.14
rpoB 761060 c.1254C>G synonymous_variant 0.16
rpoB 761063 c.1257C>G synonymous_variant 0.16
rpoB 761066 c.1260G>C synonymous_variant 0.16
rpoB 761096 c.1290G>C synonymous_variant 0.25
rpoB 761097 c.1291_1292delAGinsTC synonymous_variant 0.26
rpoB 761102 c.1296A>G synonymous_variant 0.26
rpoB 761132 c.1326G>C synonymous_variant 0.28
rpoB 761133 c.1327T>C synonymous_variant 0.28
rpoB 761147 c.1341C>T synonymous_variant 0.13
rpoB 761150 c.1344A>T synonymous_variant 0.13
rpoB 761165 c.1359G>C synonymous_variant 0.14
rpoB 761180 c.1374A>C synonymous_variant 0.14
rpoB 761579 c.1773G>C synonymous_variant 0.15
rpoB 761657 c.1851C>G synonymous_variant 0.16
rpoB 761682 c.1876C>T synonymous_variant 0.22
rpoB 761687 c.1881C>T synonymous_variant 0.22
rpoB 761690 c.1884G>C synonymous_variant 0.22
rpoB 761705 c.1899C>T synonymous_variant 0.24
rpoB 761741 c.1935G>A synonymous_variant 0.29
rpoB 761747 c.1941G>C synonymous_variant 0.23
rpoB 761750 c.1944G>C synonymous_variant 0.23
rpoB 761765 c.1959T>C synonymous_variant 0.23
rpoB 761772 p.His656Ala missense_variant 0.24
rpoB 761778 p.Asn658Asp missense_variant 0.25
rpoB 761791 p.Arg662His missense_variant 0.38
rpoB 761813 c.2007T>C synonymous_variant 0.25
rpoB 761816 c.2010C>G synonymous_variant 0.25
rpoB 761834 c.2028T>C synonymous_variant 0.16
rpoB 761847 p.Cys681Arg missense_variant 0.15
rpoB 761852 c.2046C>G synonymous_variant 0.15
rpoB 761858 c.2052G>C synonymous_variant 0.15
rpoB 761864 c.2058G>C synonymous_variant 0.15
rpoB 761873 c.2067A>G synonymous_variant 0.14
rpoB 761876 c.2070C>G synonymous_variant 0.14
rpoB 761885 c.2079T>C synonymous_variant 0.14
rpoB 761930 c.2124G>A synonymous_variant 0.22
rpoB 761948 c.2142G>C synonymous_variant 0.26
rpoB 761954 c.2148C>G synonymous_variant 0.26
rpoB 761972 c.2166C>T synonymous_variant 0.19
rpoB 761999 c.2193G>C synonymous_variant 0.22
rpoB 762014 c.2208C>G synonymous_variant 0.26
rpoB 762038 c.2232C>T synonymous_variant 0.17
rpoB 762083 c.2277T>C synonymous_variant 0.15
rpoB 762086 c.2280G>C synonymous_variant 0.16
rpoB 762101 c.2295C>G synonymous_variant 0.21
rpoB 762114 p.Ile770Val missense_variant 0.15
rpoB 762122 c.2316C>T synonymous_variant 0.15
rpoB 762131 c.2325C>G synonymous_variant 0.17
rpoB 762140 c.2334G>C synonymous_variant 0.21
rpoB 762143 c.2337T>C synonymous_variant 0.21
rpoB 762149 c.2343G>C synonymous_variant 0.19
rpoB 762158 c.2352G>C synonymous_variant 0.14
rpoB 762167 c.2361T>C synonymous_variant 0.13
rpoB 762176 c.2370T>C synonymous_variant 0.14
rpoB 762212 c.2406G>A synonymous_variant 0.19
rpoB 762218 c.2412T>C synonymous_variant 0.23
rpoB 762233 c.2427G>C synonymous_variant 0.16
rpoB 762251 c.2445G>C synonymous_variant 0.16
rpoB 762254 c.2448T>C synonymous_variant 0.15
rpoB 762257 c.2451C>G synonymous_variant 0.15
rpoB 762329 c.2523G>C synonymous_variant 0.18
rpoC 762521 c.-849C>G upstream_gene_variant 0.15
rpoC 762524 c.-846G>C upstream_gene_variant 0.15
rpoC 762527 c.-843G>C upstream_gene_variant 0.15
rpoC 762533 c.-837T>C upstream_gene_variant 0.14
rpoC 762536 c.-834T>C upstream_gene_variant 0.13
rpoC 762551 c.-819C>T upstream_gene_variant 0.14
rpoC 762581 c.-789T>C upstream_gene_variant 0.12
rpoB 762879 p.Met1025Leu missense_variant 0.29
rpoC 762899 c.-471G>C upstream_gene_variant 0.3
rpoC 762923 c.-447C>G upstream_gene_variant 0.3
rpoC 762929 c.-441G>C upstream_gene_variant 0.21
rpoC 762983 c.-387C>T upstream_gene_variant 0.29
rpoC 762989 c.-381G>A upstream_gene_variant 0.24
rpoC 762995 c.-375G>C upstream_gene_variant 0.24
rpoC 763028 c.-342T>C upstream_gene_variant 0.24
rpoC 763031 c.-339T>G upstream_gene_variant 1.0
rpoC 763034 c.-336C>G upstream_gene_variant 0.22
rpoC 763040 c.-330C>G upstream_gene_variant 0.28
rpoC 763052 c.-318G>C upstream_gene_variant 0.38
rpoC 763058 c.-312C>G upstream_gene_variant 0.33
rpoC 763070 c.-300T>C upstream_gene_variant 0.31
rpoC 763094 c.-276G>C upstream_gene_variant 0.21
rpoC 763115 c.-255T>C upstream_gene_variant 0.24
rpoC 763127 c.-243G>C upstream_gene_variant 0.18
rpoC 763139 c.-231C>T upstream_gene_variant 0.13
rpoC 763160 c.-210G>T upstream_gene_variant 0.14
rpoC 763166 c.-204A>G upstream_gene_variant 0.14
rpoC 763169 c.-201A>G upstream_gene_variant 0.14
rpoC 763283 c.-87T>C upstream_gene_variant 0.17
rpoC 763444 c.75T>C synonymous_variant 0.2
rpoC 763456 c.87A>G synonymous_variant 0.18
rpoC 763468 c.99G>C synonymous_variant 0.25
rpoC 763486 c.117T>C synonymous_variant 0.38
rpoC 763492 c.123G>C synonymous_variant 0.39
rpoC 763528 c.159G>A synonymous_variant 0.46
rpoC 763546 c.177A>G synonymous_variant 0.41
rpoC 763570 c.201G>T synonymous_variant 0.5
rpoC 763573 c.204G>C synonymous_variant 0.5
rpoC 763615 c.246G>C synonymous_variant 0.26
rpoC 763651 c.282C>T synonymous_variant 0.23
rpoC 763660 c.291T>G synonymous_variant 0.23
rpoC 763675 c.306C>G synonymous_variant 0.26
rpoC 763711 c.342G>C synonymous_variant 0.25
rpoC 763717 c.348T>C synonymous_variant 0.29
rpoC 763723 c.354G>C synonymous_variant 0.33
rpoC 763732 c.363C>G synonymous_variant 0.27
rpoC 763735 c.366G>C synonymous_variant 0.33
rpoC 763741 c.372C>T synonymous_variant 0.32
rpoC 763744 c.375G>C synonymous_variant 0.32
rpoC 763765 c.396T>G synonymous_variant 0.31
rpoC 763771 c.402C>T synonymous_variant 0.25
rpoC 763781 p.Ser138Ala missense_variant 0.28
rpoC 763792 p.Glu141Asp missense_variant 0.32
rpoC 763801 c.432C>G synonymous_variant 0.18
rpoC 763807 c.438T>C synonymous_variant 0.17
rpoC 763813 c.444C>G synonymous_variant 0.15
rpoC 763960 c.591T>G synonymous_variant 0.14
rpoC 763996 c.627T>C synonymous_variant 0.14
rpoC 764024 c.655T>C synonymous_variant 0.16
rpoC 764032 p.Asp221Glu missense_variant 0.21
rpoC 764040 p.Ser224Thr missense_variant 0.22
rpoC 764044 c.675T>C synonymous_variant 0.24
rpoC 764059 c.690G>T synonymous_variant 0.29
rpoC 764071 c.702G>C synonymous_variant 0.36
rpoC 764083 c.714A>G synonymous_variant 0.22
rpoC 764084 p.Asn239Val missense_variant 0.21
rpoC 764098 c.729A>G synonymous_variant 0.19
rpoC 764107 c.738C>T synonymous_variant 0.18
rpoC 764131 c.762T>C synonymous_variant 0.19
rpoC 764147 p.Ser260Ala missense_variant 0.16
rpoC 764153 p.Gln262Lys missense_variant 0.19
rpoC 764161 c.792G>C synonymous_variant 0.3
rpoC 764169 p.Asn267Thr missense_variant 0.28
rpoC 764188 c.819A>G synonymous_variant 0.17
rpoC 764195 p.Ser276Glu missense_variant 0.17
rpoC 764203 c.834G>C synonymous_variant 0.19
rpoC 764206 p.Asp279Glu missense_variant 0.16
rpoC 764217 p.Asn283Ser missense_variant 0.19
rpoC 764227 c.858G>C synonymous_variant 0.26
rpoC 764242 c.873C>T synonymous_variant 0.35
rpoC 764245 c.876C>T synonymous_variant 0.35
rpoC 764263 c.894G>C synonymous_variant 0.32
rpoC 764266 c.897T>C synonymous_variant 0.32
rpoC 764275 c.909_911delACA disruptive_inframe_deletion 0.24
rpoC 764297 p.Met310Leu missense_variant 0.19
rpoC 764320 c.951C>T synonymous_variant 0.17
rpoC 764347 c.978G>C synonymous_variant 0.22
rpoC 764458 c.1089G>C synonymous_variant 0.24
rpoC 764461 c.1092A>G synonymous_variant 0.24
rpoC 764485 c.1116G>C synonymous_variant 0.29
rpoC 764491 c.1122G>T synonymous_variant 0.31
rpoC 764497 c.1128A>G synonymous_variant 0.28
rpoC 764500 c.1131C>G synonymous_variant 0.24
rpoC 764521 c.1152T>C synonymous_variant 0.25
rpoC 764527 c.1158C>T synonymous_variant 0.26
rpoC 764536 c.1167G>T synonymous_variant 0.22
rpoC 764539 c.1170C>G synonymous_variant 0.22
rpoC 764548 c.1179G>A synonymous_variant 0.29
rpoC 764566 c.1197C>G synonymous_variant 0.26
rpoC 764573 c.1204_1206delCTTinsTTG synonymous_variant 0.23
rpoC 764576 c.1207_1208delTCinsAG synonymous_variant 0.2
rpoC 764611 c.1242G>T synonymous_variant 0.28
rpoC 764626 c.1257C>T synonymous_variant 0.28
rpoC 764632 c.1263T>C synonymous_variant 0.27
rpoC 764650 c.1281G>T synonymous_variant 0.31
rpoC 764695 c.1326T>C synonymous_variant 0.29
rpoC 764746 c.1377G>T synonymous_variant 0.22
rpoC 764752 c.1383G>C synonymous_variant 0.29
rpoC 764758 c.1389C>G synonymous_variant 0.28
rpoC 764764 c.1395T>C synonymous_variant 0.21
rpoC 764791 c.1422C>G synonymous_variant 0.15
rpoC 764809 c.1440C>T synonymous_variant 0.17
rpoC 764815 c.1446A>G synonymous_variant 0.17
rpoC 764827 c.1458G>C synonymous_variant 0.15
rpoC 764844 p.Ala492Gly missense_variant 0.16
rpoC 764858 c.1489T>C synonymous_variant 0.16
rpoC 765028 c.1659C>A synonymous_variant 0.12
rpoC 765052 c.1683C>G synonymous_variant 0.14
rpoC 765073 c.1704G>T synonymous_variant 0.18
rpoC 765256 c.1887G>T synonymous_variant 0.22
rpoC 765259 c.1890G>C synonymous_variant 0.22
rpoC 765265 p.Lys632Asn missense_variant 0.17
rpoC 765268 c.1899C>T synonymous_variant 0.15
rpoC 765292 c.1923G>T synonymous_variant 0.25
rpoC 765298 c.1929G>C synonymous_variant 0.29
rpoC 765300 p.Val644Ala missense_variant 0.29
rpoC 765319 c.1950A>G synonymous_variant 0.29
rpoC 765325 c.1956C>T synonymous_variant 0.27
rpoC 765326 p.His653Asp missense_variant 0.27
rpoC 765334 c.1965C>A synonymous_variant 0.2
rpoC 765338 p.Gln657Lys missense_variant 0.29
rpoC 765349 c.1980T>C synonymous_variant 0.31
rpoC 765352 c.1983G>T synonymous_variant 0.31
rpoC 765357 p.Met663Thr missense_variant 0.38
rpoC 765361 c.1992C>G synonymous_variant 0.36
rpoC 765364 p.Glu665Asp missense_variant 0.36
rpoC 765368 p.Thr667Ser missense_variant 0.36
rpoC 765397 c.2028G>T synonymous_variant 0.22
rpoC 765400 c.2031G>C synonymous_variant 0.18
rpoC 765405 p.Leu679Gln missense_variant 0.18
rpoC 765408 p.Gly680Ala missense_variant 0.17
rpoC 765425 p.Lys686Glu missense_variant 0.17
rpoC 765451 c.2082C>G synonymous_variant 0.25
rpoC 765452 p.Ala695Arg missense_variant 0.25
rpoC 765458 p.Ile697Val missense_variant 0.23
rpoC 765466 c.2097C>T synonymous_variant 0.23
rpoC 765472 c.2103C>T synonymous_variant 0.17
rpoC 765478 c.2109T>C synonymous_variant 0.19
rpoC 765493 c.2124G>C synonymous_variant 0.19
rpoC 765661 c.2292T>G synonymous_variant 0.13
rpoC 765664 p.Leu765Phe missense_variant 0.18
rpoC 765685 c.2316G>A synonymous_variant 0.25
rpoC 765689 c.2320C>T synonymous_variant 0.24
rpoC 765695 p.Glu776Lys missense_variant 0.18
rpoC 765700 c.2331T>C synonymous_variant 0.19
rpoC 765704 p.Lys779Gln missense_variant 0.19
rpoC 765707 p.Glu780Asn missense_variant 0.19
rpoC 765718 p.Asp783Glu missense_variant 0.25
rpoC 765728 p.Gln787Glu missense_variant 0.2
rpoC 765734 c.2365T>C synonymous_variant 0.2
rpoC 765737 p.Arg790Glu missense_variant 0.2
rpoC 765741 p.Glu791Ala missense_variant 0.29
rpoC 765754 p.Asp795Glu missense_variant 0.32
rpoC 765772 c.2403C>G synonymous_variant 0.27
rpoC 765778 c.2409C>G synonymous_variant 0.27
rpoC 765779 p.Asp804Lys missense_variant 0.27
rpoC 765784 c.2415C>G synonymous_variant 0.3
rpoC 765800 p.Phe811Leu missense_variant 0.22
rpoC 765811 c.2442T>C synonymous_variant 0.35
rpoC 765814 c.2445A>C synonymous_variant 0.36
rpoC 765823 c.2454C>G synonymous_variant 0.29
rpoC 765826 c.2457T>C synonymous_variant 0.28
rpoC 765835 c.2466C>T synonymous_variant 0.28
rpoC 765875 p.Val836Ile missense_variant 0.29
rpoC 765886 c.2517C>G synonymous_variant 0.31
rpoC 765904 c.2535C>G synonymous_variant 0.2
rpoC 766299 p.Thr977Met missense_variant 0.18
rpoC 766765 c.3396A>C synonymous_variant 0.14
rpoC 766771 c.3402G>C synonymous_variant 0.17
rpoC 766774 c.3405T>C synonymous_variant 0.18
rpoC 766775 p.Arg1136Lys missense_variant 0.18
rpoC 766801 c.3432C>T synonymous_variant 0.21
rpoC 766804 c.3435A>G synonymous_variant 0.21
rpoC 766807 c.3438T>C synonymous_variant 0.22
rpoC 766837 c.3468G>C synonymous_variant 0.22
rpoC 766843 c.3474T>C synonymous_variant 0.22
rpoC 766846 c.3477C>G synonymous_variant 0.21
rpoC 766858 c.3489C>G synonymous_variant 0.16
rpoC 766861 c.3492G>C synonymous_variant 0.18
rpoC 766864 c.3495G>C synonymous_variant 0.18
rpoC 766867 c.3498C>G synonymous_variant 0.18
rpoC 766876 c.3507C>T synonymous_variant 0.18
rpoC 766882 c.3513C>T synonymous_variant 0.19
rpoC 766883 p.Ser1172Ala missense_variant 0.19
rpoC 766894 c.3525T>C synonymous_variant 0.2
rpoC 766895 c.3526T>C synonymous_variant 0.16
rpoC 766911 p.Ile1181Thr missense_variant 0.18
rpoC 766915 p.Asp1182Glu missense_variant 0.16
rpoC 766921 c.3552G>C synonymous_variant 0.17
rpoC 766931 p.Ala1188Thr missense_variant 0.2
rpoC 766942 c.3573C>T synonymous_variant 0.2
rpoC 766945 c.3576A>G synonymous_variant 0.2
rpoC 766948 c.3579G>C synonymous_variant 0.2
rpoC 766951 c.3582G>C synonymous_variant 0.2
rpoC 766960 c.3591C>T synonymous_variant 0.31
rpoC 766963 c.3594T>C synonymous_variant 0.31
rpoC 766975 c.3606C>G synonymous_variant 0.21
rpoC 766978 c.3609C>T synonymous_variant 0.21
rpoC 767008 c.3639G>A synonymous_variant 0.17
rpoC 767020 c.3651C>G synonymous_variant 0.29
rpoC 767023 c.3654C>T synonymous_variant 0.29
rpoC 767059 c.3690T>G synonymous_variant 0.44
rpoC 767068 c.3699G>C synonymous_variant 0.38
rpoC 767098 c.3729T>C synonymous_variant 0.19
rpoC 767104 c.3735C>G synonymous_variant 0.17
rpoC 767105 p.Asn1246Gln missense_variant 0.17
rpoC 767119 c.3750A>G synonymous_variant 0.19
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 775697 c.2784G>A synonymous_variant 0.2
mmpL5 775955 p.Ile842Val missense_variant 0.17
mmpL5 775972 p.Ala837Pro missense_variant 0.18
mmpL5 775975 p.Leu836Met missense_variant 0.29
mmpL5 775981 p.Leu834Met missense_variant 0.31
mmpL5 775993 p.Glu830Gln missense_variant 0.19
mmpL5 775994 c.2487C>T synonymous_variant 0.13
mmpL5 775997 c.2484T>C synonymous_variant 0.18
mmpL5 776009 c.2472A>G synonymous_variant 0.18
mmpL5 776030 c.2451G>C synonymous_variant 0.16
mmpL5 776084 c.2397C>G synonymous_variant 0.14
mmpL5 776087 c.2394C>G synonymous_variant 0.14
mmpL5 776100 p.Thr794Ile missense_variant 1.0
mmpL5 776182 p.Asp767Asn missense_variant 1.0
mmpS5 779615 c.-710C>G upstream_gene_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781478 c.-82C>T upstream_gene_variant 0.29
rpsL 781595 c.36T>C synonymous_variant 0.22
rpsL 781598 c.39G>C synonymous_variant 0.22
rpsL 781608 p.Ser17Ala missense_variant 0.22
rpsL 781622 c.63C>T synonymous_variant 0.38
rpsL 781628 c.69T>C synonymous_variant 0.47
rpsL 781631 c.72G>C synonymous_variant 0.47
rpsL 781655 c.96T>A synonymous_variant 0.33
rpsL 781658 c.99A>G synonymous_variant 0.31
rpsL 781682 c.123T>G synonymous_variant 0.32
rpsL 781709 c.150G>C synonymous_variant 0.31
rpsL 781715 c.156T>C synonymous_variant 0.34
rpsL 781724 c.165G>C synonymous_variant 0.24
rpsL 781728 c.169T>C synonymous_variant 0.24
rpsL 781733 c.174G>C synonymous_variant 0.29
rpsL 781736 c.177T>C synonymous_variant 0.36
rpsL 781742 c.183C>T synonymous_variant 0.35
rpsL 781751 c.192G>C synonymous_variant 0.32
rpsL 781754 c.195G>C synonymous_variant 0.32
rpsL 781760 c.201T>C synonymous_variant 0.32
rpsL 781766 c.207C>T synonymous_variant 0.29
rpsL 781808 c.249C>T synonymous_variant 0.26
rpsL 781811 c.252C>T synonymous_variant 0.26
rpsL 781814 c.255C>T synonymous_variant 0.27
rpsL 781817 c.258G>T synonymous_variant 0.28
rpsL 781832 c.273T>C synonymous_variant 0.24
rpsL 781859 c.300T>C synonymous_variant 0.17
rpsL 781868 c.309T>C synonymous_variant 0.2
rpsL 781871 c.312G>C synonymous_variant 0.2
rpsL 781877 c.318T>C synonymous_variant 0.23
rpsL 781880 c.321C>G synonymous_variant 0.19
rplC 800648 c.-161A>C upstream_gene_variant 0.17
rplC 800690 c.-119C>T upstream_gene_variant 0.23
rplC 800693 c.-116A>G upstream_gene_variant 0.23
rplC 800703 c.-106T>C upstream_gene_variant 0.26
rplC 800715 c.-94A>C upstream_gene_variant 0.21
rplC 800720 c.-89T>C upstream_gene_variant 0.22
rplC 800723 c.-86C>G upstream_gene_variant 0.23
rplC 800744 c.-65G>T upstream_gene_variant 0.2
rplC 800913 c.105G>C synonymous_variant 0.22
rplC 800916 c.108A>C synonymous_variant 0.22
rplC 800928 c.120C>T synonymous_variant 0.15
rplC 800937 c.129A>G synonymous_variant 0.15
rplC 801018 c.210C>T synonymous_variant 0.15
rplC 801019 p.Thr71Ser missense_variant 0.18
rplC 801039 c.231A>G synonymous_variant 0.27
fbiC 1304508 p.Glu526Asp missense_variant 0.13
fbiC 1304520 c.1590A>G synonymous_variant 0.2
fbiC 1304526 c.1596T>G synonymous_variant 0.21
fbiC 1304533 c.1603T>C synonymous_variant 0.23
fbiC 1304538 c.1608C>T synonymous_variant 0.23
fbiC 1304544 c.1614T>C synonymous_variant 0.2
fbiC 1304547 c.1617C>G synonymous_variant 0.2
fbiC 1304550 c.1620C>G synonymous_variant 0.19
fbiC 1304559 p.Glu543Asp missense_variant 0.19
fbiC 1304562 c.1632G>C synonymous_variant 0.19
fbiC 1304565 c.1635C>G synonymous_variant 0.19
fbiC 1304568 c.1638T>C synonymous_variant 0.2
fbiC 1304571 c.1641G>C synonymous_variant 0.2
fbiC 1304580 c.1650T>C synonymous_variant 0.18
fbiC 1304613 c.1683T>G synonymous_variant 0.24
fbiC 1304616 c.1686C>T synonymous_variant 0.25
fbiC 1304634 c.1704C>G synonymous_variant 0.24
fbiC 1304640 c.1710A>C synonymous_variant 0.14
fbiC 1304652 c.1722C>G synonymous_variant 0.2
fbiC 1304675 p.Gly582Asp missense_variant 0.21
fbiC 1304694 c.1764A>G synonymous_variant 0.2
fbiC 1304703 c.1773C>G synonymous_variant 0.25
fbiC 1304706 c.1776C>T synonymous_variant 0.25
fbiC 1304715 c.1785G>C synonymous_variant 0.21
fbiC 1304724 c.1794A>G synonymous_variant 0.19
fbiC 1304727 c.1797A>G synonymous_variant 0.19
fbiC 1304739 c.1809C>G synonymous_variant 0.23
fbiC 1304742 c.1812T>C synonymous_variant 0.17
fbiC 1304763 c.1833C>G synonymous_variant 0.19
fbiC 1304784 c.1854T>G synonymous_variant 0.17
fbiC 1304787 c.1857T>G synonymous_variant 0.17
fbiC 1304790 c.1860C>G synonymous_variant 0.17
fbiC 1304797 p.Ala623Lys missense_variant 0.16
fbiC 1304808 c.1878C>G synonymous_variant 0.15
fbiC 1304811 c.1881C>G synonymous_variant 0.15
fbiC 1304817 c.1887T>C synonymous_variant 0.17
fbiC 1305093 c.2163C>G synonymous_variant 0.14
Rv1258c 1406760 c.580_581insC frameshift_variant 1.0
atpE 1461116 c.72C>A synonymous_variant 0.15
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471923 n.78T>C non_coding_transcript_exon_variant 0.39
rrs 1471925 n.80T>C non_coding_transcript_exon_variant 0.39
rrs 1471926 n.81C>T non_coding_transcript_exon_variant 0.38
rrs 1471932 n.87A>G non_coding_transcript_exon_variant 0.37
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 0.37
rrs 1471986 n.141C>T non_coding_transcript_exon_variant 0.52
rrs 1472019 n.174G>A non_coding_transcript_exon_variant 0.3
rrs 1472022 n.178_181delGGAC non_coding_transcript_exon_variant 0.3
rrs 1472033 n.188A>T non_coding_transcript_exon_variant 0.3
rrs 1472034 n.189T>C non_coding_transcript_exon_variant 0.3
rrs 1472043 n.198T>G non_coding_transcript_exon_variant 0.28
rrs 1472048 n.203T>G non_coding_transcript_exon_variant 0.28
rrs 1472053 n.211_212delGC non_coding_transcript_exon_variant 0.34
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 0.43
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.44
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.51
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.53
rrs 1472286 n.441C>G non_coding_transcript_exon_variant 0.39
rrs 1472287 n.442C>T non_coding_transcript_exon_variant 0.38
rrs 1472289 n.444T>C non_coding_transcript_exon_variant 0.4
rrs 1472297 n.453_465delGTCCGGGTTCTCT non_coding_transcript_exon_variant 0.42
rrs 1472315 n.470T>G non_coding_transcript_exon_variant 0.39
rrs 1472327 n.482G>A non_coding_transcript_exon_variant 0.46
rrs 1472328 n.483G>C non_coding_transcript_exon_variant 0.46
rrs 1472446 n.601T>A non_coding_transcript_exon_variant 0.56
rrs 1472452 n.607G>A non_coding_transcript_exon_variant 0.57
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.56
rrs 1472489 n.644A>G non_coding_transcript_exon_variant 0.54
rrs 1472847 n.1002G>C non_coding_transcript_exon_variant 0.29
rrs 1472848 n.1003T>G non_coding_transcript_exon_variant 0.31
rrs 1472849 n.1004C>G non_coding_transcript_exon_variant 0.31
rrs 1472850 n.1005T>C non_coding_transcript_exon_variant 0.29
rrs 1472857 n.1012A>G non_coding_transcript_exon_variant 0.31
rrs 1472858 n.1013G>T non_coding_transcript_exon_variant 0.32
rrs 1472859 n.1014G>C non_coding_transcript_exon_variant 0.32
rrs 1472860 n.1015C>G non_coding_transcript_exon_variant 0.31
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.57
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.63
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.57
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.59
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.42
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.41
rrl 1473668 n.11C>T non_coding_transcript_exon_variant 0.15
rrl 1473670 n.13A>T non_coding_transcript_exon_variant 0.15
rrl 1473696 n.39T>C non_coding_transcript_exon_variant 0.33
rrl 1473697 n.40C>T non_coding_transcript_exon_variant 0.33
rrl 1473699 n.42A>G non_coding_transcript_exon_variant 0.32
rrl 1473728 n.71A>T non_coding_transcript_exon_variant 0.42
rrl 1473770 n.113T>G non_coding_transcript_exon_variant 0.5
rrl 1473788 n.131A>G non_coding_transcript_exon_variant 0.49
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.44
rrl 1473807 n.150T>C non_coding_transcript_exon_variant 0.41
rrl 1473812 n.155G>A non_coding_transcript_exon_variant 0.43
rrl 1473814 n.157A>T non_coding_transcript_exon_variant 0.42
rrl 1473815 n.158T>A non_coding_transcript_exon_variant 0.42
rrl 1473823 n.166T>C non_coding_transcript_exon_variant 0.4
rrl 1473829 n.172G>T non_coding_transcript_exon_variant 0.43
rrl 1473830 n.173T>A non_coding_transcript_exon_variant 0.43
rrl 1473832 n.175C>T non_coding_transcript_exon_variant 0.44
rrl 1473836 n.179A>G non_coding_transcript_exon_variant 0.41
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 0.42
rrl 1473887 n.230T>G non_coding_transcript_exon_variant 0.46
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.27
rrl 1473899 n.242A>G non_coding_transcript_exon_variant 0.27
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.28
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.32
rrl 1474174 n.517A>G non_coding_transcript_exon_variant 0.34
rrl 1474181 n.524C>T non_coding_transcript_exon_variant 0.27
rrl 1474183 n.526T>C non_coding_transcript_exon_variant 0.27
rrl 1474185 n.528G>A non_coding_transcript_exon_variant 0.27
rrl 1474186 n.529A>G non_coding_transcript_exon_variant 0.27
rrl 1474308 n.651G>T non_coding_transcript_exon_variant 0.44
rrl 1474310 n.653T>G non_coding_transcript_exon_variant 0.44
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.47
rrl 1474374 n.717T>G non_coding_transcript_exon_variant 0.43
rrl 1474421 n.765_768delCGCA non_coding_transcript_exon_variant 0.3
rrl 1474428 n.771C>G non_coding_transcript_exon_variant 0.3
rrl 1474430 n.773C>G non_coding_transcript_exon_variant 0.3
rrl 1474432 n.775C>G non_coding_transcript_exon_variant 0.3
rrl 1474433 n.776G>T non_coding_transcript_exon_variant 0.3
rrl 1474434 n.777T>G non_coding_transcript_exon_variant 0.29
rrl 1474437 n.781_782delAA non_coding_transcript_exon_variant 0.29
rrl 1474446 n.789C>T non_coding_transcript_exon_variant 0.36
rrl 1474552 n.895C>T non_coding_transcript_exon_variant 0.53
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.34
rrl 1474629 n.972G>A non_coding_transcript_exon_variant 0.34
rrl 1474631 n.974G>T non_coding_transcript_exon_variant 0.34
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.34
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 0.34
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 0.35
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 0.36
rrl 1474639 n.982G>T non_coding_transcript_exon_variant 0.36
rrl 1474640 n.983C>T non_coding_transcript_exon_variant 0.36
rrl 1474720 n.1063C>T non_coding_transcript_exon_variant 0.35
rrl 1474722 n.1065T>C non_coding_transcript_exon_variant 0.36
rrl 1474753 n.1096A>G non_coding_transcript_exon_variant 0.53
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.49
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.56
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.58
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.56
rrl 1474950 n.1296_1297delCA non_coding_transcript_exon_variant 0.26
rrl 1474955 n.1298T>G non_coding_transcript_exon_variant 0.26
rrl 1474959 n.1302_1303insA non_coding_transcript_exon_variant 0.28
rrl 1474990 n.1333C>T non_coding_transcript_exon_variant 0.52
rrl 1474991 n.1334T>G non_coding_transcript_exon_variant 0.52
rrl 1474995 n.1338T>C non_coding_transcript_exon_variant 0.53
rrl 1474997 n.1340A>G non_coding_transcript_exon_variant 0.53
rrl 1474999 n.1342C>T non_coding_transcript_exon_variant 0.54
rrl 1475008 n.1351C>A non_coding_transcript_exon_variant 0.48
rrl 1475010 n.1353G>A non_coding_transcript_exon_variant 0.48
rrl 1475031 n.1374G>T non_coding_transcript_exon_variant 0.62
rrl 1475061 n.1404C>T non_coding_transcript_exon_variant 0.79
rrl 1475088 n.1431A>G non_coding_transcript_exon_variant 0.64
rrl 1475199 n.1542G>A non_coding_transcript_exon_variant 0.46
rrl 1475202 n.1545G>A non_coding_transcript_exon_variant 0.45
rrl 1475206 n.1549C>T non_coding_transcript_exon_variant 0.44
rrl 1475209 n.1552G>C non_coding_transcript_exon_variant 0.46
rrl 1475213 n.1556C>T non_coding_transcript_exon_variant 0.47
rrl 1475221 n.1564C>T non_coding_transcript_exon_variant 0.49
rrl 1475247 n.1590G>T non_coding_transcript_exon_variant 0.18
rrl 1475249 n.1592T>C non_coding_transcript_exon_variant 0.18
rrl 1475252 n.1595C>A non_coding_transcript_exon_variant 0.19
rrl 1475253 n.1598C>A non_coding_transcript_exon_variant 0.21
rrl 1475264 n.1607G>T non_coding_transcript_exon_variant 0.27
rrl 1475268 n.1611T>C non_coding_transcript_exon_variant 0.26
rrl 1475271 n.1614A>G non_coding_transcript_exon_variant 0.25
rrl 1475275 n.1618C>T non_coding_transcript_exon_variant 0.21
rrl 1475276 n.1619T>C non_coding_transcript_exon_variant 0.23
rrl 1475291 n.1634A>T non_coding_transcript_exon_variant 0.41
rrl 1475296 n.1639G>A non_coding_transcript_exon_variant 0.45
rrl 1475315 n.1658A>T non_coding_transcript_exon_variant 0.26
rrl 1475333 n.1676T>C non_coding_transcript_exon_variant 0.18
rrl 1475355 n.1698C>T non_coding_transcript_exon_variant 0.15
rrl 1475419 n.1762C>T non_coding_transcript_exon_variant 0.19
rrl 1475429 n.1772G>A non_coding_transcript_exon_variant 0.22
rrl 1475430 n.1773T>G non_coding_transcript_exon_variant 0.22
rrl 1475452 n.1795C>A non_coding_transcript_exon_variant 0.43
rrl 1475458 n.1801C>T non_coding_transcript_exon_variant 0.39
rrl 1475460 n.1803A>G non_coding_transcript_exon_variant 0.39
rrl 1475480 n.1823A>G non_coding_transcript_exon_variant 0.45
rrl 1475483 n.1826C>T non_coding_transcript_exon_variant 0.45
rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 0.53
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.52
rrl 1475532 n.1875A>G non_coding_transcript_exon_variant 0.44
rrl 1475544 n.1887A>T non_coding_transcript_exon_variant 0.3
rrl 1475545 n.1888T>G non_coding_transcript_exon_variant 0.31
rrl 1475647 n.1990G>C non_coding_transcript_exon_variant 0.16
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 0.22
rrl 1475762 n.2105G>T non_coding_transcript_exon_variant 0.21
rrl 1475763 n.2106C>T non_coding_transcript_exon_variant 0.25
rrl 1475764 n.2107A>C non_coding_transcript_exon_variant 0.21
rrl 1475765 n.2108A>G non_coding_transcript_exon_variant 0.22
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.57
rrl 1475916 n.2259C>T non_coding_transcript_exon_variant 0.62
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.59
rrl 1475991 n.2334T>C non_coding_transcript_exon_variant 0.58
rrl 1475995 n.2338G>A non_coding_transcript_exon_variant 0.6
rrl 1476033 n.2376T>G non_coding_transcript_exon_variant 0.53
rrl 1476034 n.2377C>G non_coding_transcript_exon_variant 0.52
rrl 1476035 n.2378G>A non_coding_transcript_exon_variant 0.52
rrl 1476045 n.2388G>T non_coding_transcript_exon_variant 0.48
rrl 1476046 n.2389G>C non_coding_transcript_exon_variant 0.48
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.49
rrl 1476088 n.2431A>C non_coding_transcript_exon_variant 0.52
rrl 1476103 n.2446C>G non_coding_transcript_exon_variant 0.53
rrl 1476105 n.2448G>T non_coding_transcript_exon_variant 0.53
rrl 1476106 n.2449A>T non_coding_transcript_exon_variant 0.54
rrl 1476110 n.2453G>C non_coding_transcript_exon_variant 0.53
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.56
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.62
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.63
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.65
rrl 1476251 n.2594T>G non_coding_transcript_exon_variant 0.64
rrl 1476256 n.2599A>T non_coding_transcript_exon_variant 0.67
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.63
rrl 1476529 n.2872A>G non_coding_transcript_exon_variant 0.63
rrl 1476583 n.2926G>C non_coding_transcript_exon_variant 0.62
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.66
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.57
rrl 1476664 n.3007T>C non_coding_transcript_exon_variant 0.46
rrl 1476665 n.3008T>C non_coding_transcript_exon_variant 0.45
rrl 1476674 n.3017T>C non_coding_transcript_exon_variant 0.46
rrl 1476679 n.3022T>C non_coding_transcript_exon_variant 0.46
rrl 1476692 n.3035T>A non_coding_transcript_exon_variant 0.44
rrl 1476716 n.3059A>C non_coding_transcript_exon_variant 0.26
rrl 1476723 n.3066T>A non_coding_transcript_exon_variant 0.24
rrl 1476726 n.3069A>G non_coding_transcript_exon_variant 0.2
inhA 1673886 c.-316C>T upstream_gene_variant 0.17
fabG1 1673890 p.Ala151Ser missense_variant 0.16
inhA 1673901 c.-301A>G upstream_gene_variant 0.16
inhA 1673904 c.-298C>G upstream_gene_variant 0.16
fabG1 1673905 p.Ser156Ala missense_variant 0.16
inhA 1673913 c.-289C>G upstream_gene_variant 0.16
inhA 1673916 c.-286A>T upstream_gene_variant 0.17
fabG1 1673917 p.Val160Leu missense_variant 0.21
inhA 1673922 c.-280T>C upstream_gene_variant 0.22
inhA 1673934 c.-268C>G upstream_gene_variant 0.14
fabG1 1673941 p.Ala168Ser missense_variant 0.19
inhA 1673946 c.-256C>G upstream_gene_variant 0.19
inhA 1674141 c.-61T>C upstream_gene_variant 0.17
inhA 1674295 p.Gln32Ala missense_variant 0.16
inhA 1674307 c.106C>T synonymous_variant 0.14
inhA 1674313 c.112_114delCTCinsTTG synonymous_variant 0.15
inhA 1674318 c.117C>G synonymous_variant 0.15
inhA 1674334 p.Arg45Lys missense_variant 0.17
inhA 1674342 c.141T>C synonymous_variant 0.16
inhA 1674367 p.Ala56Thr missense_variant 0.13
inhA 1674486 c.285T>C synonymous_variant 0.2
inhA 1674507 c.306G>C synonymous_variant 0.14
inhA 1674513 c.312C>T synonymous_variant 0.15
inhA 1674570 c.369G>C synonymous_variant 0.14
inhA 1674597 c.396G>A synonymous_variant 0.13
inhA 1674601 p.Leu134Val missense_variant 0.13
inhA 1674609 c.408G>C synonymous_variant 0.15
inhA 1674656 p.Ser152Thr missense_variant 0.13
inhA 1674660 c.459G>T synonymous_variant 0.13
inhA 1674669 c.468G>C synonymous_variant 0.18
inhA 1674699 c.498C>T synonymous_variant 0.15
inhA 1674703 c.502T>C synonymous_variant 0.14
inhA 1674774 c.573A>G synonymous_variant 0.2
inhA 1674777 c.576C>G synonymous_variant 0.12
inhA 1674783 c.582C>T synonymous_variant 0.12
inhA 1674801 c.600T>C synonymous_variant 0.21
inhA 1674804 c.603G>C synonymous_variant 0.21
inhA 1674837 c.636C>A synonymous_variant 0.23
inhA 1674858 c.657G>A synonymous_variant 0.25
inhA 1674876 c.675C>G synonymous_variant 0.27
inhA 1674879 c.678T>G synonymous_variant 0.27
inhA 1674903 c.702T>C synonymous_variant 0.35
inhA 1674904 p.Ala235Pro missense_variant 0.35
inhA 1674907 c.708G>C synonymous_variant 0.25
inhA 1674924 c.723G>C synonymous_variant 0.21
inhA 1674933 c.732G>T synonymous_variant 0.21
inhA 1674942 c.741T>G synonymous_variant 0.15
inhA 1674945 c.744C>T synonymous_variant 0.15
rpsA 1833547 c.6G>A synonymous_variant 0.14
rpsA 1833554 p.Thr5Ser missense_variant 0.2
rpsA 1833589 c.48A>C synonymous_variant 0.19
rpsA 1833595 c.54T>G synonymous_variant 0.19
rpsA 1833596 p.Ser19Ala missense_variant 0.19
rpsA 1833628 c.87G>C synonymous_variant 0.17
rpsA 1833634 c.93G>A synonymous_variant 0.18
rpsA 1833661 c.120A>G synonymous_variant 0.27
rpsA 1833664 c.123C>A synonymous_variant 0.26
rpsA 1833676 c.135A>G synonymous_variant 0.23
rpsA 1833679 c.138G>T synonymous_variant 0.18
rpsA 1833685 c.144G>T synonymous_variant 0.18
rpsA 1833691 c.150G>A synonymous_variant 0.13
rpsA 1833694 c.153G>C synonymous_variant 0.21
rpsA 1833697 c.156C>G synonymous_variant 0.21
rpsA 1833709 c.168C>T synonymous_variant 0.14
rpsA 1833727 c.186G>C synonymous_variant 0.19
rpsA 1833733 c.192C>T synonymous_variant 0.17
rpsA 1833734 p.Ala65Ser missense_variant 0.17
rpsA 1833745 c.204G>C synonymous_variant 0.2
rpsA 1833781 c.240T>C synonymous_variant 0.15
rpsA 1833856 c.315A>G synonymous_variant 0.15
rpsA 1833862 c.321G>T synonymous_variant 0.15
rpsA 1833874 c.333T>G synonymous_variant 0.15
rpsA 1833877 c.336C>T synonymous_variant 0.15
rpsA 1833894 p.Ala118Glu missense_variant 0.14
rpsA 1833928 c.387G>C synonymous_variant 0.14
rpsA 1833949 c.408T>C synonymous_variant 0.19
rpsA 1833970 c.429G>C synonymous_variant 0.24
rpsA 1833979 c.438T>C synonymous_variant 0.26
rpsA 1833991 c.450C>A synonymous_variant 0.27
rpsA 1834009 c.468C>T synonymous_variant 0.24
rpsA 1834012 c.471G>C synonymous_variant 0.24
rpsA 1834015 c.474G>C synonymous_variant 0.25
rpsA 1834021 c.480C>T synonymous_variant 0.25
rpsA 1834030 c.489C>G synonymous_variant 0.29
rpsA 1834069 c.528G>C synonymous_variant 0.18
rpsA 1834102 c.561T>C synonymous_variant 0.12
rpsA 1834177 c.636A>C synonymous_variant 1.0
rpsA 1834234 c.693G>C synonymous_variant 0.28
rpsA 1834240 c.699T>C synonymous_variant 0.28
rpsA 1834249 c.708T>C synonymous_variant 0.31
rpsA 1834261 c.720A>G synonymous_variant 0.27
rpsA 1834264 c.723G>C synonymous_variant 0.27
rpsA 1834294 c.753G>C synonymous_variant 0.2
rpsA 1834298 p.Gln253Asn missense_variant 0.16
rpsA 1834303 c.762T>C synonymous_variant 0.18
rpsA 1834306 c.765T>C synonymous_variant 0.25
rpsA 1834348 c.807T>C synonymous_variant 0.23
rpsA 1834357 c.816T>C synonymous_variant 0.27
rpsA 1834366 c.825A>G synonymous_variant 0.25
rpsA 1834387 c.846C>T synonymous_variant 0.22
rpsA 1834396 c.855G>C synonymous_variant 0.21
rpsA 1834411 c.870T>G synonymous_variant 0.24
rpsA 1834417 c.876G>C synonymous_variant 0.35
rpsA 1834423 c.882G>C synonymous_variant 0.35
rpsA 1834432 c.891G>T synonymous_variant 0.22
rpsA 1834435 c.894G>T synonymous_variant 0.17
rpsA 1834451 c.910T>C synonymous_variant 0.17
rpsA 1834456 c.915T>G synonymous_variant 0.16
rpsA 1834468 c.927A>G synonymous_variant 0.24
rpsA 1834477 c.936C>T synonymous_variant 0.29
rpsA 1834489 c.948T>C synonymous_variant 0.23
rpsA 1834498 c.957C>T synonymous_variant 0.15
rpsA 1834520 p.Ala327Ser missense_variant 0.21
rpsA 1834528 c.987T>C synonymous_variant 0.21
rpsA 1834540 c.999G>C synonymous_variant 0.29
rpsA 1834543 c.1002C>G synonymous_variant 0.29
rpsA 1834546 c.1005T>C synonymous_variant 0.31
rpsA 1834554 c.1014_1015delTG frameshift_variant 0.31
rpsA 1834558 c.1017_1018insAG frameshift_variant 0.31
rpsA 1834573 c.1032G>C synonymous_variant 0.47
rpsA 1834606 c.1065C>T synonymous_variant 0.29
rpsA 1834609 c.1068T>C synonymous_variant 0.28
rpsA 1834612 c.1071G>C synonymous_variant 0.28
rpsA 1834619 c.1078T>C synonymous_variant 0.25
rpsA 1834622 c.1081_1083delTCGinsAGC synonymous_variant 0.25
rpsA 1834633 c.1092A>G synonymous_variant 0.23
rpsA 1834639 c.1098T>C synonymous_variant 0.23
rpsA 1834667 p.Ala376Ser missense_variant 0.19
rpsA 1834690 c.1149T>C synonymous_variant 0.18
tlyA 1917972 c.33A>G synonymous_variant 1.0
ndh 2102518 c.525T>C synonymous_variant 0.14
katG 2154724 p.Arg463Leu missense_variant 1.0
PPE35 2167926 p.Leu896Ser missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2517941 c.-174C>G upstream_gene_variant 0.32
kasA 2517953 c.-162C>T upstream_gene_variant 0.31
kasA 2517965 c.-150C>T upstream_gene_variant 0.26
kasA 2517989 c.-126T>C upstream_gene_variant 0.19
kasA 2517993 c.-122G>A upstream_gene_variant 0.19
kasA 2518560 p.Gly149Asp missense_variant 0.17
kasA 2518849 c.735G>C synonymous_variant 0.19
kasA 2518853 p.Leu247Val missense_variant 0.19
kasA 2518864 c.750G>C synonymous_variant 0.15
kasA 2519137 c.1023T>G synonymous_variant 0.15
kasA 2519143 c.1029G>C synonymous_variant 0.14
kasA 2519152 c.1038G>C synonymous_variant 0.14
kasA 2519158 c.1044C>A synonymous_variant 0.14
kasA 2519167 c.1053T>G synonymous_variant 0.14
kasA 2519170 c.1056G>A synonymous_variant 0.14
kasA 2519180 p.Val356Ile missense_variant 0.17
kasA 2519185 c.1071C>G synonymous_variant 0.18
kasA 2519194 c.1080G>C synonymous_variant 0.17
kasA 2519195 p.Thr361Ala missense_variant 0.17
kasA 2519212 c.1098C>G synonymous_variant 0.22
kasA 2519215 c.1101C>T synonymous_variant 0.22
kasA 2519224 c.1110C>A synonymous_variant 0.22
kasA 2519227 c.1113G>C synonymous_variant 0.22
kasA 2519239 c.1125A>C synonymous_variant 0.18
kasA 2519242 c.1128C>T synonymous_variant 0.18
kasA 2519245 c.1131T>C synonymous_variant 0.18
Rv2752c 3064689 c.1503C>T synonymous_variant 1.0
thyA 3073884 c.588C>G synonymous_variant 0.16
thyA 3073886 c.585_586insAG frameshift_variant 0.17
thyA 3073890 p.Leu194Phe missense_variant 0.18
thyA 3073891 c.579_580delCT frameshift_variant 0.18
thyA 3073905 c.567C>G synonymous_variant 0.25
thyA 3073917 c.555C>G synonymous_variant 0.26
thyA 3073920 c.550_552delCTCinsTTG synonymous_variant 0.28
thyA 3073925 c.547T>C synonymous_variant 0.26
thyA 3073929 c.543T>C synonymous_variant 0.26
thyA 3073956 c.516G>C synonymous_variant 0.23
thyA 3073959 c.513T>C synonymous_variant 0.23
thyA 3073971 c.501C>T synonymous_variant 0.23
thyA 3073977 c.495A>G synonymous_variant 0.14
thyA 3073980 c.492C>T synonymous_variant 0.16
thyA 3073983 c.489C>T synonymous_variant 0.14
thyA 3074004 c.468T>C synonymous_variant 0.17
thyA 3074013 c.459C>T synonymous_variant 0.17
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
fprA 3474274 p.Pro90Ser missense_variant 0.17
Rv3236c 3612760 c.357C>A synonymous_variant 1.0
Rv3236c 3612813 p.Thr102Ala missense_variant 1.0
rpoA 3877734 c.774G>C synonymous_variant 0.14
rpoA 3877764 c.744C>G synonymous_variant 0.16
rpoA 3877771 p.Ser246Arg missense_variant 0.16
rpoA 3877776 c.732T>C synonymous_variant 0.2
rpoA 3877794 c.714G>T synonymous_variant 0.15
rpoA 3877818 c.690A>G synonymous_variant 0.23
rpoA 3877848 c.660C>T synonymous_variant 0.34
rpoA 3877857 c.651G>A synonymous_variant 0.38
rpoA 3877875 c.633T>G synonymous_variant 0.37
rpoA 3877878 c.630G>C synonymous_variant 0.36
rpoA 3877890 c.618C>T synonymous_variant 0.35
rpoA 3877893 c.615C>G synonymous_variant 0.35
rpoA 3877896 p.Pro204Ala missense_variant 0.35
rpoA 3877900 p.Ser203Thr missense_variant 0.36
rpoA 3877905 c.603A>G synonymous_variant 0.36
rpoA 3877908 c.600T>C synonymous_variant 0.36
rpoA 3877920 c.588G>C synonymous_variant 0.36
rpoA 3877926 c.582G>C synonymous_variant 0.33
rpoA 3877929 c.579C>T synonymous_variant 0.33
rpoA 3877962 c.546G>C synonymous_variant 0.42
rpoA 3877971 p.Asp179Glu missense_variant 0.41
rpoA 3877986 c.522G>C synonymous_variant 0.39
rpoA 3877989 c.519A>G synonymous_variant 0.37
rpoA 3877992 c.516C>G synonymous_variant 0.37
rpoA 3878001 c.505_507delTCAinsAGC synonymous_variant 0.22
rpoA 3878019 c.489A>G synonymous_variant 0.17
rpoA 3878022 c.486T>C synonymous_variant 0.17
rpoA 3878028 c.480G>C synonymous_variant 0.18
rpoA 3878031 c.477T>C synonymous_variant 0.18
rpoA 3878040 c.468T>C synonymous_variant 0.18
rpoA 3878046 c.462T>G synonymous_variant 0.19
rpoA 3878050 p.Arg153Lys missense_variant 0.19
rpoA 3878055 c.453A>G synonymous_variant 0.19
rpoA 3878061 c.447G>C synonymous_variant 0.17
rpoA 3878064 c.444G>C synonymous_variant 0.17
rpoA 3878067 c.441C>G synonymous_variant 0.16
rpoA 3878070 c.438T>C synonymous_variant 0.16
rpoA 3878103 c.405A>G synonymous_variant 0.26
rpoA 3878106 c.402G>C synonymous_variant 0.23
rpoA 3878118 c.390T>C synonymous_variant 0.24
rpoA 3878130 c.378C>G synonymous_variant 0.18
rpoA 3878142 p.Gly122Glu missense_variant 0.19
rpoA 3878157 c.351C>G synonymous_variant 0.2
rpoA 3878175 c.333G>T synonymous_variant 0.2
rpoA 3878184 c.324C>T synonymous_variant 0.19
rpoA 3878187 c.321C>G synonymous_variant 0.19
rpoA 3878193 c.315T>C synonymous_variant 0.19
rpoA 3878197 p.Glu104Ala missense_variant 0.19
rpoA 3878202 c.306G>C synonymous_variant 0.16
rpoA 3878205 c.303T>C synonymous_variant 0.24
rpoA 3878217 c.291A>G synonymous_variant 0.24
rpoA 3878247 c.261G>C synonymous_variant 0.17
rpoA 3878250 c.258C>G synonymous_variant 0.15
rpoA 3878256 c.252G>C synonymous_variant 0.29
rpoA 3878262 p.Ser82Gly missense_variant 0.21
rpoA 3878271 c.237T>C synonymous_variant 0.27
rpoA 3878283 p.Glu75Asp missense_variant 0.27
rpoA 3878292 c.216T>C synonymous_variant 0.3
rpoA 3878298 c.210A>G synonymous_variant 0.32
rpoA 3878301 c.207C>G synonymous_variant 0.32
rpoA 3878310 c.198G>C synonymous_variant 0.27
rpoA 3878322 c.186A>G synonymous_variant 0.3
rpoA 3878331 c.177A>G synonymous_variant 0.29
rpoA 3878334 c.174T>C synonymous_variant 0.29
rpoA 3878337 c.171T>C synonymous_variant 0.29
rpoA 3878346 c.162T>C synonymous_variant 0.29
rpoA 3878358 c.150C>G synonymous_variant 0.22
rpoA 3878364 c.144A>C synonymous_variant 0.22
rpoA 3878415 c.93C>T synonymous_variant 0.16
clpC1 4038460 p.Leu749Met missense_variant 0.15
clpC1 4038461 p.Ala748Asp missense_variant 0.15
clpC1 4038475 p.Ser744Gly missense_variant 0.16
clpC1 4038499 p.Ser736Gly missense_variant 0.18
clpC1 4038519 p.Arg729Gln missense_variant 0.21
clpC1 4038530 p.Glu725Asp missense_variant 0.18
clpC1 4038536 c.2169C>T synonymous_variant 0.14
clpC1 4038596 c.2109A>G synonymous_variant 0.21
clpC1 4038623 c.2082A>G synonymous_variant 0.17
clpC1 4038749 c.1956C>T synonymous_variant 0.16
clpC1 4038755 c.1950G>T synonymous_variant 0.17
clpC1 4038767 c.1938G>T synonymous_variant 0.15
clpC1 4038773 c.1932T>C synonymous_variant 0.15
clpC1 4038782 c.1923G>C synonymous_variant 0.19
clpC1 4038790 c.1915C>T synonymous_variant 0.23
clpC1 4038839 c.1866G>C synonymous_variant 0.22
clpC1 4038878 c.1827A>G synonymous_variant 0.18
clpC1 4038905 c.1800A>G synonymous_variant 0.17
clpC1 4038911 c.1794G>T synonymous_variant 0.16
clpC1 4038914 c.1791G>C synonymous_variant 0.17
clpC1 4038917 c.1788C>T synonymous_variant 0.17
clpC1 4038920 c.1785C>T synonymous_variant 0.17
clpC1 4038923 c.1782A>G synonymous_variant 0.19
clpC1 4038932 c.1773G>C synonymous_variant 0.24
clpC1 4038941 c.1764G>C synonymous_variant 0.26
clpC1 4038953 c.1752A>G synonymous_variant 0.28
clpC1 4038956 c.1749T>C synonymous_variant 0.28
clpC1 4038965 c.1740T>C synonymous_variant 0.3
clpC1 4038971 c.1734T>C synonymous_variant 0.25
clpC1 4038974 c.1731T>C synonymous_variant 0.25
clpC1 4038989 c.1716T>C synonymous_variant 0.27
clpC1 4038997 c.1708T>C synonymous_variant 0.25
clpC1 4038998 c.1707C>T synonymous_variant 0.26
clpC1 4039001 p.Asn568Glu missense_variant 0.25
clpC1 4039004 c.1701C>G synonymous_variant 0.25
clpC1 4039009 c.1696C>T synonymous_variant 0.27
clpC1 4039022 c.1683A>G synonymous_variant 0.25
clpC1 4039064 c.1641C>T synonymous_variant 0.28
clpC1 4039070 c.1635G>C synonymous_variant 0.21
clpC1 4039073 c.1632C>T synonymous_variant 0.21
clpC1 4039082 c.1623C>T synonymous_variant 0.25
clpC1 4039085 c.1620A>G synonymous_variant 0.22
clpC1 4039097 c.1608G>C synonymous_variant 0.17
clpC1 4039118 c.1587C>G synonymous_variant 0.18
clpC1 4039121 c.1584T>C synonymous_variant 0.21
clpC1 4039145 c.1560G>C synonymous_variant 0.16
clpC1 4039169 c.1536A>G synonymous_variant 0.29
clpC1 4039172 c.1533A>G synonymous_variant 0.3
clpC1 4039178 c.1527G>C synonymous_variant 0.27
clpC1 4039220 c.1485G>C synonymous_variant 0.14
clpC1 4039238 c.1467C>A synonymous_variant 0.17
clpC1 4039241 c.1464G>C synonymous_variant 0.16
clpC1 4039274 c.1431G>C synonymous_variant 0.23
clpC1 4039280 c.1425G>C synonymous_variant 0.23
clpC1 4039283 c.1422C>T synonymous_variant 0.26
clpC1 4039286 c.1419T>C synonymous_variant 0.27
clpC1 4039298 c.1407T>C synonymous_variant 0.24
clpC1 4039310 c.1395A>G synonymous_variant 0.26
clpC1 4039328 c.1377A>T synonymous_variant 0.29
clpC1 4039331 c.1374C>G synonymous_variant 0.3
clpC1 4039334 c.1371G>C synonymous_variant 0.25
clpC1 4039337 p.Thr456Gln missense_variant 0.24
clpC1 4039347 p.Arg453Lys missense_variant 0.28
clpC1 4039355 c.1350G>C synonymous_variant 0.36
clpC1 4039382 c.1323C>G synonymous_variant 0.33
clpC1 4039391 c.1314T>C synonymous_variant 0.28
clpC1 4039394 c.1311G>C synonymous_variant 0.26
clpC1 4039406 c.1299G>C synonymous_variant 0.19
clpC1 4039409 c.1296T>C synonymous_variant 0.19
clpC1 4039412 c.1293T>C synonymous_variant 0.19
clpC1 4039430 c.1275T>C synonymous_variant 0.19
clpC1 4039442 c.1263A>T synonymous_variant 0.28
clpC1 4039448 c.1257A>G synonymous_variant 0.24
clpC1 4039454 c.1251A>T synonymous_variant 0.25
clpC1 4039463 c.1242C>G synonymous_variant 0.14
clpC1 4039466 c.1239T>C synonymous_variant 0.14
clpC1 4039469 c.1236T>C synonymous_variant 0.13
clpC1 4039517 c.1188C>G synonymous_variant 0.19
clpC1 4039553 c.1152C>G synonymous_variant 0.18
clpC1 4039556 c.1149G>C synonymous_variant 0.19
clpC1 4039559 c.1146C>G synonymous_variant 0.19
clpC1 4039568 p.Met379Ile missense_variant 0.19
clpC1 4039574 p.Ala377Pro missense_variant 0.18
clpC1 4039589 c.1116G>C synonymous_variant 0.25
clpC1 4039592 c.1113G>C synonymous_variant 0.21
clpC1 4039610 c.1095G>T synonymous_variant 0.24
clpC1 4039613 c.1092C>T synonymous_variant 0.24
clpC1 4039616 c.1089G>C synonymous_variant 0.24
clpC1 4039622 c.1083C>A synonymous_variant 0.26
clpC1 4039649 c.1056G>C synonymous_variant 0.32
clpC1 4039661 c.1044T>C synonymous_variant 0.34
clpC1 4039664 c.1041G>C synonymous_variant 0.33
clpC1 4039682 c.1023C>G synonymous_variant 0.17
clpC1 4039748 c.957G>C synonymous_variant 0.16
clpC1 4039751 c.954A>G synonymous_variant 0.15
clpC1 4039850 c.855T>C synonymous_variant 0.14
clpC1 4039898 c.807C>G synonymous_variant 0.17
clpC1 4039916 c.789T>C synonymous_variant 0.18
clpC1 4039922 c.783C>T synonymous_variant 0.18
clpC1 4039943 c.762G>C synonymous_variant 0.2
clpC1 4039946 c.759A>C synonymous_variant 0.2
clpC1 4039952 c.753T>C synonymous_variant 0.23
clpC1 4039955 c.750G>T synonymous_variant 0.24
clpC1 4039979 c.726C>G synonymous_variant 0.29
clpC1 4039991 c.714G>C synonymous_variant 0.3
clpC1 4039997 c.708C>T synonymous_variant 0.29
clpC1 4040009 c.696C>A synonymous_variant 0.26
clpC1 4040021 c.684A>C synonymous_variant 0.26
clpC1 4040024 c.681A>G synonymous_variant 0.24
clpC1 4040033 c.672G>C synonymous_variant 0.22
clpC1 4040036 c.669C>T synonymous_variant 0.22
clpC1 4040042 c.663C>T synonymous_variant 0.23
clpC1 4040108 c.597G>C synonymous_variant 0.3
clpC1 4040141 c.564C>T synonymous_variant 0.38
clpC1 4040144 c.561G>C synonymous_variant 0.38
clpC1 4040147 c.558A>G synonymous_variant 0.38
clpC1 4040153 c.552A>G synonymous_variant 0.38
clpC1 4040159 c.546G>T synonymous_variant 0.42
clpC1 4040162 c.543G>C synonymous_variant 0.36
clpC1 4040165 c.540G>C synonymous_variant 0.42
clpC1 4040168 c.537G>C synonymous_variant 0.36
clpC1 4040180 c.525C>T synonymous_variant 0.36
clpC1 4040314 c.391C>T synonymous_variant 0.23
clpC1 4040315 c.390G>A synonymous_variant 0.14
clpC1 4040324 c.381G>C synonymous_variant 0.25
clpC1 4040333 c.372G>T synonymous_variant 0.17
clpC1 4040345 c.360C>G synonymous_variant 0.13
clpC1 4040348 c.357G>C synonymous_variant 0.14
clpC1 4040351 c.354C>A synonymous_variant 0.23
clpC1 4040354 c.351A>G synonymous_variant 0.36
clpC1 4040357 c.348T>C synonymous_variant 0.14
clpC1 4040363 c.342A>C synonymous_variant 0.25
clpC1 4040372 c.333C>A synonymous_variant 0.21
clpC1 4040375 c.330G>C synonymous_variant 0.17
embC 4240726 c.864G>C synonymous_variant 0.2
embC 4240736 p.Ser292Ala missense_variant 0.27
embC 4240765 c.903C>G synonymous_variant 0.38
embC 4240777 c.915G>A synonymous_variant 0.36
embC 4240780 p.His306Gln missense_variant 0.36
embC 4240783 c.921G>C synonymous_variant 0.36
embC 4240786 c.924C>A synonymous_variant 0.28
embC 4240789 c.927T>C synonymous_variant 0.26
embC 4240795 c.933C>G synonymous_variant 0.26
embC 4240819 c.957A>C synonymous_variant 0.23
embC 4240822 c.960C>G synonymous_variant 0.21
embC 4240828 c.966G>C synonymous_variant 0.21
embC 4240831 c.969T>G synonymous_variant 0.19
embC 4240837 c.975C>T synonymous_variant 0.19
embC 4240867 c.1005T>A synonymous_variant 0.17
embC 4241008 c.1146G>C synonymous_variant 0.25
embC 4241011 c.1149C>G synonymous_variant 0.25
embC 4241012 p.Met384Leu missense_variant 0.25
embC 4241017 c.1155T>C synonymous_variant 0.25
embC 4241023 c.1161T>G synonymous_variant 0.33
embC 4241024 p.Val388Phe missense_variant 0.33
embC 4241039 p.Asp393Asn missense_variant 0.33
embC 4241050 c.1188T>G synonymous_variant 0.27
embC 4241053 c.1191G>T synonymous_variant 0.27
embC 4241059 c.1197G>A synonymous_variant 0.3
embC 4241062 c.1200G>C synonymous_variant 0.27
embC 4241071 c.1209C>G synonymous_variant 0.27
embC 4241086 c.1224G>C synonymous_variant 0.21
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4243460 c.228C>T synonymous_variant 1.0
embA 4245071 c.1839G>A synonymous_variant 0.19
embA 4245072 c.1840C>T synonymous_variant 0.19
embB 4247611 c.1098G>C synonymous_variant 0.21
embB 4247614 c.1101T>C synonymous_variant 0.21
embB 4247621 c.1108C>T synonymous_variant 0.21
embB 4249220 c.2709delC frameshift_variant 0.15
aftB 4267647 p.Asp397Gly missense_variant 1.0
aftB 4269156 c.-320C>G upstream_gene_variant 0.17
aftB 4269177 c.-341G>C upstream_gene_variant 0.15
ubiA 4269188 p.Thr216Ser missense_variant 0.12
ethA 4327917 c.-444G>A upstream_gene_variant 0.14
ethR 4328063 p.Ala172Val missense_variant 0.22
ethR 4328065 p.Thr173Ala missense_variant 0.22
whiB6 4338473 p.Arg17Gly missense_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0
gid 4407927 p.Glu92Asp missense_variant 1.0