lineage | Count |
---|---|
lineage4 | 55 |
La1.2 | 2 |
58 | |
lineage1.1.3.1 | 1 |
lineage4.3.2.1 | 2 |
lineage2.2.1 | 16 |
lineage6.1.3 | 1 |
lineage2.2.1.1 | 6 |
lineage2.2.1.2 | 1 |
lineage4.9 | 15 |
lineage4.4.1.1.1 | 1 |
lineage4.2.1 | 1 |
lineage9;lineage3.1 | 1 |
lineage2.2 | 3 |
lineage6.3;lineage4.9;lineage2.1 | 1 |
lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
lineage1.2.1.1 | 1 |
lineage2.1 | 1 |
lineage4.8 | 2 |
lineage4.1 | 1 |
lineage3.1.3 | 1 |
lineage4.1.1.2 | 1 |
lineage4.3.4.2.1 | 1 |
lineage4.6.2.2 | 1 |
lineage4.9;lineage2.1 | 1 |
lineage4.1.1 | 1 |
lineage4.7 | 1 |
lineage4.1.2 | 2 |
La1.8.1 | 1 |
lineage1.1.2 | 1 |
spoligotype | Count |
---|---|
None | 181 |
ID | Drug resistance | Lineage | Country iso2 | ERR4799378 | Sensitive | lineage4 | None | ERR6198317 | Other | La1.2 | None | ERR6358979 | Other | None | ERR6866022 | Other | None | ERR736848 | HR-TB | None | ERR6866547 | Sensitive | lineage4 | None | ERR6866639 | Other | None | ERR736834 | Sensitive | lineage4 | None | ERR6866410 | Sensitive | None | ERR9634265 | Sensitive | None | ERR736872 | Sensitive | lineage4 | None | ERR751326 | Sensitive | lineage4 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR8975532 | HR-TB | lineage4.3.2.1 | None | SRR10315567 | Other | lineage2.2.1 | None | ERR9787256 | Other | lineage6.1.3 | None | SRR10809074 | Sensitive | lineage4 | None | SRR10808399 | Sensitive | lineage4 | None | SRR10808490 | Sensitive | lineage2.2.1.1 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | SRR10808805 | Sensitive | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1158918 | Sensitive | lineage4 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1173568 | Other | lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1173777 | Other | lineage4 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1180270 | Other | lineage2.2.1 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1180996 | HR-TB | lineage4 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1181251 | Other | lineage2.2.1 | None | SRR1184024 | Other | lineage2.2.1.1 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1183145 | Other | lineage2.2.1 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR14782405 | HR-TB | None | SRR14801749 | Sensitive | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR25827418 | Pre-XDR-TB | lineage9;lineage3.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR20970016 | Other | lineage2.2 | None | SRR8692899 | Other | lineage4.9 | None | SRR3675488 | HR-TB | None | ERR158583 | HR-TB | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | SRR3675222 | Other | None | ERR4814734 | Other | lineage1.2.1.1 | None | SRR3675246 | Sensitive | lineage4 | None | ERR702405 | Sensitive | lineage2.1 | None | SRR3675501 | HR-TB | None | ERR4815550 | Other | lineage4 | None | SRR3675510 | Other | None | SRR3675502 | Other | None | SRR3675550 | Other | None | ERR4816151 | Other | lineage4.8 | None | ERR2446566 | Other | lineage4.1 | None | SRR3675571 | HR-TB | None | ERR4816738 | Sensitive | lineage4.9 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR4818252 | Other | lineage4.1.1.2 | None | SRR5341366 | Sensitive | lineage4 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | SRR5341373 | HR-TB | lineage4 | None | SRR5341387 | Other | lineage4 | None | SRR5341461 | Sensitive | lineage4 | None | SRR5341396 | Other | lineage4 | None | SRR5341425 | Other | lineage4 | None | SRR5341400 | HR-TB | lineage4 | None | SRR5341418 | Other | None | SRR5341293 | HR-TB | lineage4 | None | SRR5341432 | HR-TB | lineage4 | None | SRR5341455 | Sensitive | lineage4 | None | SRR5341300 | Other | lineage4 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341303 | RR-TB | lineage4 | None | ERR4819809 | HR-TB | lineage4.6.2.2 | None | SRR5341313 | HR-TB | None | SRR5341308 | Sensitive | lineage4 | None | SRR6045519 | HR-TB | None | SRR5341315 | Sensitive | None | SRR5341467 | Other | lineage4 | None | SRR5341469 | Other | lineage4 | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | ERR4820112 | Sensitive | lineage4.1.1 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | SRR5535933 | HR-TB | None | ERR4821655 | Sensitive | lineage4 | None | ERR2660539 | Other | lineage4.9 | None | SRR6045892 | Sensitive | None | SRR6045217 | Other | lineage4 | None | SRR6044838 | Other | lineage4.9 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6045053 | Other | None | SRR6045158 | Other | lineage4.9 | None | SRR6046210 | Other | lineage4 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6045399 | Other | None | SRR6046397 | Other | None | SRR6046362 | HR-TB | None | ERR4830353 | Other | None | SRR6511621 | HR-TB | None | SRR6046460 | HR-TB | None | SRR6046824 | HR-TB | None | SRR6046482 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | SRR7496523 | Other | lineage4.7 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR502510 | Sensitive | lineage4 | None | SRR6832787 | RR-TB | lineage2.2.1 | None | ERR294266 | HR-TB | None | SRR7496471 | Sensitive | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR502889 | Other | None | SRR9970980 | Other | lineage4.1.2 | None | ERR323107 | Other | lineage4 | None | SRR7535082 | Sensitive | lineage4 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR1063896 | Sensitive | None | ERR323085 | Sensitive | lineage4 | None | ERR067681 | HR-TB | None | ERR067699 | HR-TB | lineage4 | None | ERR1034652 | Other | None | ERR1035122 | Sensitive | None | ERR323066 | Sensitive | lineage4 | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | ERR1063883 | Sensitive | lineage4 | None | ERR133825 | Sensitive | lineage4 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR137286 | Sensitive | lineage4 | None | ERR323115 | Sensitive | lineage4 | None | ERR133986 | HR-TB | None | ERR3283014 | HR-TB | None | ERR3283021 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR3283031 | HR-TB | None | ERR3283047 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3283041 | Other | lineage4.9 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3439432 | Other | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797060 | Other | La1.8.1 | None | ERR3797046 | HR-TB | None | ERR3797048 | HR-TB | None | ERR3797064 | Sensitive | None | ERR3797081 | Sensitive | lineage4 | None | ERR4024991 | Other | None | ERR3797087 | Sensitive | lineage4 | None | ERR4596910 | Sensitive | lineage4 | None | ERR403298 | HR-TB | lineage4 | None | ERR4188247 | HR-TB | None | ERR4769497 | HR-TB | La1.2 | None | ERR4769450 | HR-TB | None | ERR4769452 | HR-TB | None | ERR4796929 | Sensitive | lineage4 | None | ERR4796254 | Sensitive | lineage4 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR4798406 | HR-TB | None | ERR4798099 | Other | None | ERR4797264 | Sensitive | None | ERR4797474 | Other | None | ERR4799025 | Pre-XDR-TB | None |
---|