Run ID: SRR1183145
Sample name:
Date: 2025-02-11T20:11:15.358867
Number of reads: 3103937
Percentage reads mapped: 68.01
Median coverage: 69.0
Strain: lineage2.2.1
Spoligotype:
Drug-resistance: Other
Lineage | Family | RDs | Frequency |
---|---|---|---|
lineage2 | East-Asian | RD105 | 0.97 |
lineage2.2.1 | East-Asian (Beijing) | RD105;RD207;RD181 | 0.98 |
lineage2.2 | East-Asian (Beijing) | RD105;RD207 | 0.98 |
Drug | Resistance | Supporting mutations | WHO confidence | Comment |
---|---|---|---|---|
rifampicin | ||||
isoniazid | ||||
ethambutol | embB | p.His312Arg | Mutation from literature | |
p.Ala356Val | Uncertain significance | Mutation from literature | ||
pyrazinamide | ||||
streptomycin | ||||
fluoroquinolones | ||||
moxifloxacin | ||||
ofloxacin | ||||
levofloxacin | ||||
ciprofloxacin | ||||
aminoglycosides | ||||
amikacin | ||||
capreomycin | ||||
kanamycin | ||||
cycloserine | ||||
ethionamide | ||||
clofazimine | ||||
para-aminosalicylic_acid | ||||
delamanid | ||||
bedaquiline | ||||
linezolid |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs | Confidence | Comment |
---|---|---|---|---|---|---|---|
embB | 4247448 | p.His312Arg | missense_variant | 0.3 | ethambutol | Mutation from literature | |
embB | 4247580 | p.Ala356Val | missense_variant | 0.18 | ethambutol | Uncertain significance | Mutation from literature |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs | Confidence |
---|---|---|---|---|---|---|
dnaA | 795 | c.795A>C | synonymous_variant | 0.16 | isoniazid | Not assoc w R - Interim |
dnaA | 828 | c.828T>C | synonymous_variant | 0.18 | isoniazid | Not assoc w R - Interim |
dnaA | 837 | c.837A>G | synonymous_variant | 0.2 | isoniazid | |
dnaA | 840 | c.840G>A | synonymous_variant | 0.19 | isoniazid | |
dnaA | 849 | c.849A>G | synonymous_variant | 0.22 | isoniazid | |
dnaA | 1092 | c.1092T>C | synonymous_variant | 0.21 | isoniazid | Not assoc w R - Interim |
dnaA | 1104 | c.1104T>C | synonymous_variant | 0.2 | isoniazid | |
dnaA | 1110 | c.1110T>C | synonymous_variant | 0.18 | isoniazid | |
dnaA | 1153 | c.1153T>C | synonymous_variant | 0.16 | isoniazid | |
dnaA | 1197 | c.1197T>G | synonymous_variant | 0.16 | isoniazid | |
dnaA | 1245 | c.1245G>C | synonymous_variant | 0.18 | isoniazid | Not assoc w R - Interim |
dnaA | 1254 | c.1254T>C | synonymous_variant | 0.19 | isoniazid | |
dnaA | 1278 | c.1278T>C | synonymous_variant | 0.18 | isoniazid | |
gyrB | 5308 | c.69G>A | synonymous_variant | 0.16 | levofloxacin | |
moxifloxacin | ||||||
gyrB | 5341 | c.102T>C | synonymous_variant | 0.17 | levofloxacin | |
moxifloxacin | ||||||
gyrB | 5449 | c.210T>C | synonymous_variant | 0.16 | levofloxacin | |
moxifloxacin | ||||||
gyrB | 5455 | c.216T>C | synonymous_variant | 0.17 | levofloxacin | |
moxifloxacin | ||||||
gyrB | 6091 | c.852G>C | synonymous_variant | 0.17 | levofloxacin | |
moxifloxacin | ||||||
gyrB | 6097 | c.858G>A | synonymous_variant | 0.18 | levofloxacin | |
moxifloxacin | ||||||
gyrB | 6115 | c.876A>G | synonymous_variant | 0.23 | levofloxacin | |
moxifloxacin | ||||||
gyrB | 6121 | c.882C>T | synonymous_variant | 0.29 | levofloxacin | |
moxifloxacin | ||||||
gyrB | 6127 | c.888G>C | synonymous_variant | 0.3 | levofloxacin | |
moxifloxacin | ||||||
gyrB | 6145 | c.906C>T | synonymous_variant | 0.34 | levofloxacin | |
moxifloxacin | ||||||
gyrB | 6178 | c.939C>T | synonymous_variant | 0.28 | levofloxacin | |
moxifloxacin | ||||||
gyrB | 6181 | c.942C>G | synonymous_variant | 0.3 | levofloxacin | |
moxifloxacin | ||||||
gyrB | 6196 | c.957C>G | synonymous_variant | 0.27 | levofloxacin | |
moxifloxacin | ||||||
gyrB | 6214 | c.975G>C | synonymous_variant | 0.26 | levofloxacin | |
moxifloxacin | ||||||
gyrB | 6247 | c.1008G>A | synonymous_variant | 0.27 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | ||||||
gyrB | 6250 | c.1011A>G | synonymous_variant | 0.32 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrB | 6253 | c.1014G>C | synonymous_variant | 0.29 | levofloxacin | |
moxifloxacin | ||||||
gyrB | 6259 | p.Asp340Glu | missense_variant | 0.33 | levofloxacin | |
moxifloxacin | ||||||
gyrB | 6280 | c.1041T>C | synonymous_variant | 0.24 | levofloxacin | |
moxifloxacin | ||||||
gyrB | 6286 | c.1047T>C | synonymous_variant | 0.31 | levofloxacin | |
moxifloxacin | ||||||
gyrB | 6298 | c.1059C>G | synonymous_variant | 0.19 | levofloxacin | |
moxifloxacin | ||||||
gyrB | 6299 | c.1060C>T | synonymous_variant | 0.17 | levofloxacin | |
moxifloxacin | ||||||
gyrB | 6307 | c.1068T>G | synonymous_variant | 0.28 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 6313 | c.-989C>T | upstream_gene_variant | 0.17 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 6331 | c.-971A>G | upstream_gene_variant | 0.24 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 6361 | c.-941G>A | upstream_gene_variant | 0.19 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 6362 | c.-940T>C | upstream_gene_variant | 0.19 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7024 | c.-278G>C | upstream_gene_variant | 0.17 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7030 | c.-272C>A | upstream_gene_variant | 0.18 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7033 | c.-269G>C | upstream_gene_variant | 0.21 | levofloxacin | |
moxifloxacin | ||||||
gyrB | 7060 | c.1821T>C | synonymous_variant | 0.27 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 7066 | c.-236G>C | upstream_gene_variant | 0.22 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7081 | c.-221T>C | upstream_gene_variant | 0.2 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7090 | c.-212C>T | upstream_gene_variant | 0.21 | levofloxacin | |
moxifloxacin | ||||||
gyrB | 7093 | c.1854T>C | synonymous_variant | 0.23 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 7099 | c.-203G>A | upstream_gene_variant | 0.21 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7108 | c.-194G>A | upstream_gene_variant | 0.23 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 | levofloxacin | Not assoc w R |
moxifloxacin | Not assoc w R | |||||
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 | levofloxacin | Not assoc w R |
moxifloxacin | Not assoc w R | |||||
gyrA | 7595 | c.294C>G | synonymous_variant | 0.21 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7601 | c.300C>G | synonymous_variant | 0.22 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 7728 | c.427_429delAGGinsCGC | synonymous_variant | 0.17 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7784 | c.483A>G | synonymous_variant | 0.26 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7787 | c.486G>A | synonymous_variant | 0.16 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7799 | c.498A>G | synonymous_variant | 0.26 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 7835 | c.534A>C | synonymous_variant | 0.23 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7838 | c.537C>T | synonymous_variant | 0.24 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7850 | c.549C>G | synonymous_variant | 0.18 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 7859 | c.558A>C | synonymous_variant | 0.18 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8121 | c.820T>C | synonymous_variant | 0.16 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8156 | c.855T>C | synonymous_variant | 0.22 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8168 | c.867A>G | synonymous_variant | 0.19 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8177 | c.876A>C | synonymous_variant | 0.16 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8264 | c.963T>C | synonymous_variant | 0.16 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8324 | c.1023T>C | synonymous_variant | 0.16 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8486 | c.1185T>C | synonymous_variant | 0.19 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 8531 | c.1230G>A | synonymous_variant | 0.19 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 8546 | c.1245T>C | synonymous_variant | 0.3 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 8561 | c.1260A>G | synonymous_variant | 0.2 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8562 | c.1261C>T | synonymous_variant | 0.18 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 8571 | c.1270C>T | synonymous_variant | 0.18 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8603 | c.1302A>G | synonymous_variant | 0.32 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 8609 | c.1308G>C | synonymous_variant | 0.29 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 8619 | c.1318T>C | synonymous_variant | 0.29 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 8633 | c.1332C>G | synonymous_variant | 0.19 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8645 | c.1344C>T | synonymous_variant | 0.25 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 8655 | p.Ile452Val | missense_variant | 0.26 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8693 | c.1392T>C | synonymous_variant | 0.27 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8711 | c.1410A>C | synonymous_variant | 0.3 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8723 | c.1422G>A | synonymous_variant | 0.19 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 8729 | c.1428T>C | synonymous_variant | 0.29 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8756 | c.1455A>G | synonymous_variant | 0.24 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 8762 | c.1461G>C | synonymous_variant | 0.24 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 8767 | p.Arg489Lys | missense_variant | 0.22 | levofloxacin | Uncertain significance |
moxifloxacin | Uncertain significance | |||||
gyrA | 8783 | c.1482G>T | synonymous_variant | 0.15 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8810 | c.1509A>C | synonymous_variant | 0.19 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8828 | c.1527T>C | synonymous_variant | 0.25 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8829 | c.1528T>C | synonymous_variant | 0.25 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 8852 | c.1551T>C | synonymous_variant | 0.21 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8855 | c.1554C>G | synonymous_variant | 0.17 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 8858 | c.1557T>C | synonymous_variant | 0.27 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8867 | c.1566A>G | synonymous_variant | 0.18 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 8870 | c.1569G>C | synonymous_variant | 0.28 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 8873 | c.1572A>C | synonymous_variant | 0.27 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 8876 | c.1575C>T | synonymous_variant | 0.28 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8897 | c.1596T>C | synonymous_variant | 0.29 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 8903 | c.1602T>C | synonymous_variant | 0.26 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 8915 | c.1614A>G | synonymous_variant | 0.23 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 8933 | c.1632G>A | synonymous_variant | 0.2 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 8942 | c.1641G>C | synonymous_variant | 0.16 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8946 | c.1645_1647delTTGinsCTC | synonymous_variant | 0.17 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 8987 | c.1686C>G | synonymous_variant | 0.18 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8998 | p.Leu566Trp | missense_variant | 0.19 | levofloxacin | Uncertain significance |
moxifloxacin | Uncertain significance | |||||
gyrA | 9023 | c.1722A>C | synonymous_variant | 0.17 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 9029 | c.1728T>G | synonymous_variant | 0.23 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 9050 | p.Asp583Glu | missense_variant | 0.24 | levofloxacin | Uncertain significance |
moxifloxacin | Uncertain significance | |||||
gyrA | 9065 | c.1764C>G | synonymous_variant | 0.19 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 9071 | c.1770G>C | synonymous_variant | 0.18 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 9182 | c.1881T>C | synonymous_variant | 0.15 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 9185 | c.1884C>T | synonymous_variant | 0.15 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 9230 | c.1929T>C | synonymous_variant | 0.23 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 9242 | c.1941A>C | synonymous_variant | 0.23 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 9284 | c.1983T>G | synonymous_variant | 0.27 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 9296 | c.1995T>C | synonymous_variant | 0.26 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 9304 | p.Gly668Glu | missense_variant | 1.0 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 9345 | c.2044A>C | synonymous_variant | 0.16 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 9452 | c.2151G>C | synonymous_variant | 0.15 | levofloxacin | |
moxifloxacin | ||||||
fgd1 | 490803 | c.21T>A | synonymous_variant | 0.18 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fgd1 | 490818 | c.36C>T | synonymous_variant | 0.26 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fgd1 | 490830 | c.48A>C | synonymous_variant | 0.28 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fgd1 | 490851 | c.69A>G | synonymous_variant | 0.19 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fgd1 | 490854 | c.72C>T | synonymous_variant | 0.17 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fgd1 | 490857 | c.75C>G | synonymous_variant | 0.17 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fgd1 | 490896 | c.114C>T | synonymous_variant | 0.23 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fgd1 | 491043 | c.261T>G | synonymous_variant | 0.16 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fgd1 | 491106 | c.324T>C | synonymous_variant | 0.17 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fgd1 | 491526 | c.744T>C | synonymous_variant | 0.2 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fgd1 | 491542 | c.760T>C | synonymous_variant | 0.21 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fgd1 | 491547 | c.765A>C | synonymous_variant | 0.19 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fgd1 | 491550 | c.768T>C | synonymous_variant | 0.19 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fgd1 | 491601 | c.819T>C | synonymous_variant | 0.18 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fgd1 | 491610 | c.828A>G | synonymous_variant | 0.19 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fgd1 | 491616 | c.834A>G | synonymous_variant | 0.18 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 | pretomanid | |
delamanid | Not assoc w R - Interim | |||||
clofazimine | Not assoc w R | |||||
mshA | 575539 | c.192C>T | synonymous_variant | 0.18 | isoniazid | Not assoc w R - Interim |
ethionamide | Not assoc w R - Interim | |||||
mshA | 575561 | p.Met72Val | missense_variant | 0.22 | isoniazid | |
ethionamide | ||||||
mshA | 575590 | c.243T>G | synonymous_variant | 0.23 | isoniazid | |
ethionamide | ||||||
mshA | 575635 | c.288A>G | synonymous_variant | 0.19 | isoniazid | |
ethionamide | ||||||
mshA | 575652 | p.Arg102Gln | missense_variant | 0.19 | isoniazid | |
ethionamide | ||||||
mshA | 575659 | c.312A>G | synonymous_variant | 0.2 | isoniazid | |
ethionamide | ||||||
mshA | 575662 | c.315C>A | synonymous_variant | 0.17 | isoniazid | |
ethionamide | ||||||
mshA | 575665 | c.318G>C | synonymous_variant | 0.18 | isoniazid | Not assoc w R - Interim |
ethionamide | Not assoc w R - Interim | |||||
mshA | 575705 | c.358T>C | synonymous_variant | 0.17 | isoniazid | |
ethionamide | ||||||
mshA | 575713 | c.366G>A | synonymous_variant | 0.19 | isoniazid | |
ethionamide | ||||||
mshA | 575734 | c.387T>G | synonymous_variant | 0.15 | isoniazid | |
ethionamide | ||||||
mshA | 575746 | c.399C>G | synonymous_variant | 0.26 | isoniazid | |
ethionamide | ||||||
mshA | 575772 | p.Val142Ala | missense_variant | 0.29 | isoniazid | |
ethionamide | ||||||
mshA | 575785 | c.438T>C | synonymous_variant | 0.34 | isoniazid | |
ethionamide | ||||||
mshA | 575821 | c.474G>C | synonymous_variant | 0.35 | isoniazid | |
ethionamide | ||||||
mshA | 575824 | c.477T>C | synonymous_variant | 0.23 | isoniazid | |
ethionamide | ||||||
mshA | 575842 | c.495G>C | synonymous_variant | 0.18 | isoniazid | |
ethionamide | ||||||
mshA | 575848 | c.501C>T | synonymous_variant | 0.18 | isoniazid | |
ethionamide | ||||||
mshA | 575860 | c.513G>A | synonymous_variant | 0.18 | isoniazid | |
ethionamide | ||||||
mshA | 575864 | c.517T>C | synonymous_variant | 0.17 | isoniazid | |
ethionamide | ||||||
mshA | 575872 | c.525C>T | synonymous_variant | 0.17 | isoniazid | |
ethionamide | ||||||
mshA | 575878 | c.531A>G | synonymous_variant | 0.22 | isoniazid | |
ethionamide | ||||||
mshA | 575884 | c.537G>C | synonymous_variant | 0.31 | isoniazid | |
ethionamide | ||||||
mshA | 575893 | c.546C>G | synonymous_variant | 0.28 | isoniazid | |
ethionamide | ||||||
mshA | 575905 | c.558G>C | synonymous_variant | 0.21 | isoniazid | |
ethionamide | ||||||
mshA | 575907 | p.Ala187Val | missense_variant | 0.76 | isoniazid | Not assoc w R |
ethionamide | Not assoc w R | |||||
mshA | 575916 | p.Asp190Ala | missense_variant | 0.17 | isoniazid | |
ethionamide | ||||||
mshA | 575924 | p.Gly193Ile | missense_variant | 0.15 | isoniazid | |
ethionamide | ||||||
ccsA | 619672 | c.-219A>G | upstream_gene_variant | 0.15 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
ccsA | 620604 | c.714C>G | synonymous_variant | 0.25 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
ccsA | 620607 | c.717T>G | synonymous_variant | 0.23 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
ccsA | 620613 | c.723C>T | synonymous_variant | 0.24 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
ccsA | 620619 | c.729G>A | synonymous_variant | 0.22 | kanamycin | Not assoc w R - Interim |
capreomycin | Not assoc w R - Interim | |||||
amikacin | Not assoc w R - Interim | |||||
ccsA | 620622 | c.732G>C | synonymous_variant | 0.25 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
ccsA | 620625 | p.Ile245Met | missense_variant | 1.0 | kanamycin | Uncertain significance |
capreomycin | Not assoc w R | |||||
amikacin | Not assoc w R | |||||
ccsA | 620631 | c.741T>G | synonymous_variant | 0.21 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
Rv0565c | 657081 | c.390G>A | synonymous_variant | 1.0 | ethionamide | Not assoc w R - Interim |
Rv0565c | 657142 | p.Arg110His | missense_variant | 1.0 | ethionamide | Uncertain significance |
Rv0565c | 657701 | c.-231C>G | upstream_gene_variant | 0.18 | ethionamide | |
Rv0565c | 657734 | c.-264T>C | upstream_gene_variant | 0.16 | ethionamide | |
hadA | 731738 | c.-192G>T | upstream_gene_variant | 0.15 | isoniazid | |
hadA | 731774 | c.-156T>C | upstream_gene_variant | 0.31 | isoniazid | |
hadA | 731789 | c.-141A>G | upstream_gene_variant | 0.17 | isoniazid | |
hadA | 731798 | c.-132C>G | upstream_gene_variant | 0.16 | isoniazid | |
hadA | 732329 | p.Leu134Ile | missense_variant | 0.17 | isoniazid | |
hadA | 732346 | c.417T>C | synonymous_variant | 0.16 | isoniazid | |
hadA | 732361 | c.432C>T | synonymous_variant | 0.21 | isoniazid | |
hadA | 732376 | c.447T>C | synonymous_variant | 0.2 | isoniazid | |
hadA | 732391 | c.462T>A | synonymous_variant | 0.15 | isoniazid | |
nusG | 734407 | p.Val52Ile | missense_variant | 0.26 | rifampicin | |
nusG | 734421 | c.168A>G | synonymous_variant | 0.26 | rifampicin | |
nusG | 734424 | c.171G>T | synonymous_variant | 0.2 | rifampicin | |
nusG | 734442 | c.189G>A | synonymous_variant | 0.17 | rifampicin | |
nusG | 734475 | c.222T>C | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
nusG | 734481 | c.228C>T | synonymous_variant | 0.2 | rifampicin | |
nusG | 734532 | c.279A>G | synonymous_variant | 0.26 | rifampicin | Not assoc w R - Interim |
nusG | 734559 | c.306T>C | synonymous_variant | 0.29 | rifampicin | |
nusG | 734580 | c.327T>C | synonymous_variant | 0.22 | rifampicin | Not assoc w R - Interim |
nusG | 734589 | c.336G>C | synonymous_variant | 0.22 | rifampicin | |
nusG | 734596 | c.343T>C | synonymous_variant | 0.2 | rifampicin | |
nusG | 734762 | p.Ala170Val | missense_variant | 0.17 | rifampicin | |
nusG | 734769 | c.516G>A | synonymous_variant | 0.16 | rifampicin | |
nusG | 734781 | c.528A>G | synonymous_variant | 0.25 | rifampicin | |
nusG | 734784 | c.531G>A | synonymous_variant | 0.25 | rifampicin | |
nusG | 734790 | c.537G>C | synonymous_variant | 0.19 | rifampicin | |
nusG | 734793 | c.540C>T | synonymous_variant | 0.18 | rifampicin | |
nusG | 734826 | c.573A>C | synonymous_variant | 0.3 | rifampicin | |
nusG | 734847 | c.594T>C | synonymous_variant | 0.26 | rifampicin | |
nusG | 734895 | c.642A>G | synonymous_variant | 0.2 | rifampicin | |
mmaA3 | 737555 | c.595C>A | synonymous_variant | 0.16 | isoniazid | |
mmaA3 | 737562 | c.588A>G | synonymous_variant | 0.18 | isoniazid | |
mmaA3 | 737595 | c.555G>A | synonymous_variant | 0.24 | isoniazid | |
mmaA3 | 737598 | p.Ile184Met | missense_variant | 0.23 | isoniazid | |
mmaA3 | 737610 | c.540A>C | synonymous_variant | 0.18 | isoniazid | |
mmaA3 | 737613 | c.537C>T | synonymous_variant | 0.18 | isoniazid | |
mmaA3 | 737619 | c.531C>G | synonymous_variant | 0.16 | isoniazid | |
mmaA3 | 738347 | c.-198C>G | upstream_gene_variant | 0.16 | isoniazid | |
rpoB | 760112 | c.306T>C | synonymous_variant | 0.17 | rifampicin | |
rpoB | 760121 | c.315T>C | synonymous_variant | 0.23 | rifampicin | Not assoc w R - Interim |
rpoB | 760184 | c.378A>G | synonymous_variant | 0.29 | rifampicin | Not assoc w R - Interim |
rpoB | 760196 | c.390C>G | synonymous_variant | 0.3 | rifampicin | Not assoc w R - Interim |
rpoB | 760235 | c.429T>C | synonymous_variant | 0.35 | rifampicin | Not assoc w R - Interim |
rpoB | 760244 | c.438G>C | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoB | 760256 | c.450C>T | synonymous_variant | 0.22 | rifampicin | Not assoc w R - Interim |
rpoB | 760274 | c.468G>A | synonymous_variant | 0.18 | rifampicin | |
rpoB | 760298 | c.492G>C | synonymous_variant | 0.2 | rifampicin | Not assoc w R - Interim |
rpoB | 760307 | c.501T>C | synonymous_variant | 0.36 | rifampicin | |
rpoB | 760328 | c.522G>C | synonymous_variant | 0.34 | rifampicin | |
rpoB | 760340 | c.534G>T | synonymous_variant | 0.35 | rifampicin | Not assoc w R - Interim |
rpoB | 760343 | c.537G>C | synonymous_variant | 0.19 | rifampicin | |
rpoB | 760361 | c.555T>C | synonymous_variant | 0.3 | rifampicin | Not assoc w R - Interim |
rpoB | 760424 | c.618C>G | synonymous_variant | 0.25 | rifampicin | Not assoc w R - Interim |
rpoB | 760430 | c.624T>C | synonymous_variant | 0.25 | rifampicin | Not assoc w R - Interim |
rpoB | 760475 | c.669A>G | synonymous_variant | 0.35 | rifampicin | Not assoc w R - Interim |
rpoB | 760478 | c.672C>T | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoB | 760481 | c.675G>T | synonymous_variant | 0.16 | rifampicin | |
rpoB | 760484 | c.678A>G | synonymous_variant | 0.38 | rifampicin | Not assoc w R - Interim |
rpoB | 760508 | c.702G>C | synonymous_variant | 0.2 | rifampicin | |
rpoB | 760511 | c.705G>C | synonymous_variant | 0.2 | rifampicin | |
rpoB | 760522 | p.Ser239Asn | missense_variant | 0.18 | rifampicin | Uncertain significance |
rpoB | 760528 | p.Gln241Arg | missense_variant | 0.18 | rifampicin | |
rpoB | 760532 | c.726T>C | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoB | 760533 | p.Val243Thr | missense_variant | 0.21 | rifampicin | |
rpoB | 760547 | c.741G>C | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoB | 760556 | c.750G>A | synonymous_variant | 0.19 | rifampicin | |
rpoB | 760563 | p.Arg253Met | missense_variant | 0.31 | rifampicin | Uncertain significance |
rpoB | 760591 | p.Val262Ala | missense_variant | 0.35 | rifampicin | |
rpoB | 760598 | c.792C>T | synonymous_variant | 0.19 | rifampicin | |
rpoB | 760611 | c.805T>C | synonymous_variant | 0.29 | rifampicin | Not assoc w R - Interim |
rpoB | 760646 | c.840C>G | synonymous_variant | 0.28 | rifampicin | Not assoc w R - Interim |
rpoB | 760655 | c.849A>G | synonymous_variant | 0.26 | rifampicin | Not assoc w R - Interim |
rpoB | 760661 | c.855A>C | synonymous_variant | 0.27 | rifampicin | Not assoc w R - Interim |
rpoB | 760670 | c.864G>C | synonymous_variant | 0.25 | rifampicin | |
rpoB | 760674 | c.868T>C | synonymous_variant | 0.22 | rifampicin | Not assoc w R - Interim |
rpoB | 760679 | c.873A>G | synonymous_variant | 0.22 | rifampicin | Not assoc w R - Interim |
rpoB | 760683 | c.877T>C | synonymous_variant | 0.22 | rifampicin | Not assoc w R - Interim |
rpoB | 760817 | c.1011A>G | synonymous_variant | 0.18 | rifampicin | |
rpoB | 760830 | c.1024T>C | synonymous_variant | 0.24 | rifampicin | Not assoc w R - Interim |
rpoB | 760841 | c.1035T>C | synonymous_variant | 0.24 | rifampicin | Not assoc w R - Interim |
rpoB | 760845 | p.Thr347Ala | missense_variant | 0.2 | rifampicin | |
rpoB | 760859 | c.1053T>G | synonymous_variant | 0.18 | rifampicin | |
rpoB | 760868 | c.1062C>G | synonymous_variant | 0.19 | rifampicin | |
rpoB | 760919 | c.1113C>G | synonymous_variant | 0.18 | rifampicin | |
rpoB | 760928 | c.1122G>C | synonymous_variant | 0.23 | rifampicin | Not assoc w R - Interim |
rpoB | 760946 | c.1140A>G | synonymous_variant | 0.27 | rifampicin | Not assoc w R - Interim |
rpoB | 760971 | c.1165C>A | synonymous_variant | 0.18 | rifampicin | |
rpoB | 760994 | c.1188G>A | synonymous_variant | 0.2 | rifampicin | Not assoc w R - Interim |
rpoB | 761006 | c.1200C>T | synonymous_variant | 0.18 | rifampicin | |
rpoB | 761015 | c.1209G>C | synonymous_variant | 0.23 | rifampicin | Not assoc w R - Interim |
rpoB | 761027 | c.1221A>G | synonymous_variant | 0.25 | rifampicin | Not assoc w R - Interim |
rpoB | 761037 | c.1231T>C | synonymous_variant | 0.22 | rifampicin | Not assoc w R - Interim |
rpoB | 761051 | c.1245G>C | synonymous_variant | 0.15 | rifampicin | Not assoc w R - Interim |
rpoB | 761066 | c.1260G>C | synonymous_variant | 0.18 | rifampicin | |
rpoB | 761097 | c.1291_1292delAGinsTC | synonymous_variant | 0.22 | rifampicin | |
rpoB | 761102 | c.1296A>G | synonymous_variant | 0.22 | rifampicin | |
rpoB | 761132 | c.1326G>C | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoB | 761133 | c.1327_1329delTTGinsCTC | synonymous_variant | 0.24 | rifampicin | |
rpoB | 761207 | c.1401C>T | synonymous_variant | 0.22 | rifampicin | |
rpoB | 761249 | c.1443A>G | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoB | 761255 | c.1449T>G | synonymous_variant | 0.22 | rifampicin | Not assoc w R - Interim |
rpoB | 761327 | c.1521A>G | synonymous_variant | 0.25 | rifampicin | Not assoc w R - Interim |
rpoB | 761354 | c.1548C>T | synonymous_variant | 0.25 | rifampicin | |
rpoB | 761360 | c.1554T>C | synonymous_variant | 0.26 | rifampicin | Not assoc w R - Interim |
rpoB | 761367 | p.Glu521Gln | missense_variant | 0.26 | rifampicin | |
rpoB | 761374 | p.Val523Asp | missense_variant | 0.26 | rifampicin | |
rpoB | 761408 | c.1602G>C | synonymous_variant | 0.27 | rifampicin | |
rpoB | 761414 | c.1608A>G | synonymous_variant | 0.2 | rifampicin | Not assoc w R - Interim |
rpoB | 761423 | c.1617T>C | synonymous_variant | 0.29 | rifampicin | |
rpoB | 761435 | c.1629T>C | synonymous_variant | 0.31 | rifampicin | |
rpoB | 761438 | c.1632G>C | synonymous_variant | 0.22 | rifampicin | |
rpoB | 761444 | c.1638T>C | synonymous_variant | 0.31 | rifampicin | |
rpoB | 761471 | c.1665C>G | synonymous_variant | 0.17 | rifampicin | |
rpoB | 761483 | c.1677G>C | synonymous_variant | 0.27 | rifampicin | |
rpoB | 761492 | c.1686G>C | synonymous_variant | 0.29 | rifampicin | |
rpoB | 761502 | p.Pro566Ala | missense_variant | 0.18 | rifampicin | |
rpoB | 761510 | c.1704T>G | synonymous_variant | 0.2 | rifampicin | |
rpoB | 761537 | c.1731C>G | synonymous_variant | 0.24 | rifampicin | Not assoc w R - Interim |
rpoB | 761561 | c.1755C>G | synonymous_variant | 0.27 | rifampicin | |
rpoB | 761564 | c.1758G>C | synonymous_variant | 0.29 | rifampicin | Not assoc w R - Interim |
rpoB | 761573 | c.1767C>G | synonymous_variant | 0.3 | rifampicin | Not assoc w R - Interim |
rpoB | 761579 | c.1773G>C | synonymous_variant | 0.3 | rifampicin | Not assoc w R - Interim |
rpoB | 761582 | c.1776G>A | synonymous_variant | 0.2 | rifampicin | |
rpoB | 761606 | c.1800C>G | synonymous_variant | 0.32 | rifampicin | |
rpoB | 761612 | c.1806G>T | synonymous_variant | 0.34 | rifampicin | Not assoc w R - Interim |
rpoB | 761615 | c.1809A>C | synonymous_variant | 0.33 | rifampicin | Not assoc w R - Interim |
rpoB | 761636 | c.1830G>T | synonymous_variant | 0.35 | rifampicin | Not assoc w R - Interim |
rpoB | 761645 | c.1839C>G | synonymous_variant | 0.34 | rifampicin | Not assoc w R - Interim |
rpoB | 761648 | c.1842T>C | synonymous_variant | 0.35 | rifampicin | |
rpoB | 761657 | c.1851C>G | synonymous_variant | 0.28 | rifampicin | Not assoc w R - Interim |
rpoB | 762014 | c.2208C>T | synonymous_variant | 0.15 | rifampicin | |
rpoB | 762017 | c.2211A>G | synonymous_variant | 0.25 | rifampicin | Not assoc w R - Interim |
rpoB | 762050 | c.2244G>A | synonymous_variant | 0.18 | rifampicin | |
rpoB | 762053 | c.2247T>C | synonymous_variant | 0.31 | rifampicin | Not assoc w R - Interim |
rpoB | 762065 | c.2259T>C | synonymous_variant | 0.29 | rifampicin | Not assoc w R - Interim |
rpoB | 762083 | c.2277T>C | synonymous_variant | 0.28 | rifampicin | Not assoc w R - Interim |
rpoB | 762086 | c.2280G>C | synonymous_variant | 0.27 | rifampicin | Not assoc w R - Interim |
rpoB | 762114 | p.Ile770Val | missense_variant | 0.3 | rifampicin | Uncertain significance |
rpoB | 762119 | c.2313C>T | synonymous_variant | 0.17 | rifampicin | |
rpoB | 762131 | c.2325C>G | synonymous_variant | 0.18 | rifampicin | |
rpoB | 762134 | c.2328C>G | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoB | 762167 | c.2361T>C | synonymous_variant | 0.21 | rifampicin | Not assoc w R - Interim |
rpoB | 762185 | c.2379G>C | synonymous_variant | 0.31 | rifampicin | Not assoc w R - Interim |
rpoB | 762218 | c.2412T>G | synonymous_variant | 0.17 | rifampicin | |
rpoB | 762224 | c.2418C>G | synonymous_variant | 0.17 | rifampicin | |
rpoB | 762236 | c.2430G>A | synonymous_variant | 0.17 | rifampicin | |
rpoB | 762254 | c.2448T>C | synonymous_variant | 0.67 | rifampicin | Not assoc w R - Interim |
rpoB | 762254 | c.2448T>G | synonymous_variant | 0.31 | rifampicin | |
rpoB | 762257 | c.2451C>G | synonymous_variant | 0.29 | rifampicin | |
rpoB | 762266 | c.2460T>C | synonymous_variant | 0.17 | rifampicin | |
rpoB | 762269 | c.2463G>A | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoB | 762284 | c.2478G>C | synonymous_variant | 0.26 | rifampicin | Not assoc w R - Interim |
rpoB | 762293 | c.2487T>C | synonymous_variant | 0.29 | rifampicin | Not assoc w R - Interim |
rpoB | 762317 | c.2511A>G | synonymous_variant | 0.21 | rifampicin | Not assoc w R - Interim |
rpoB | 762347 | c.2541T>C | synonymous_variant | 0.21 | rifampicin | |
rpoB | 762362 | p.Glu852Asp | missense_variant | 0.19 | rifampicin | |
rpoB | 762369 | c.2563T>C | synonymous_variant | 0.18 | rifampicin | |
rpoC | 762374 | c.-996G>C | upstream_gene_variant | 0.21 | rifampicin | |
rpoC | 762395 | c.-975G>C | upstream_gene_variant | 0.2 | rifampicin | |
rpoC | 762398 | c.-972T>C | upstream_gene_variant | 0.21 | rifampicin | |
rpoB | 762404 | c.2598T>C | synonymous_variant | 0.22 | rifampicin | Not assoc w R - Interim |
rpoC | 762410 | c.-960T>C | upstream_gene_variant | 0.23 | rifampicin | |
rpoB | 762416 | c.2610A>G | synonymous_variant | 0.25 | rifampicin | Not assoc w R - Interim |
rpoB | 762470 | c.2664G>C | synonymous_variant | 0.21 | rifampicin | Not assoc w R - Interim |
rpoB | 762510 | p.Ala902Pro | missense_variant | 0.19 | rifampicin | Uncertain significance |
rpoC | 762533 | c.-837T>C | upstream_gene_variant | 0.17 | rifampicin | |
rpoC | 762536 | c.-834T>C | upstream_gene_variant | 0.17 | rifampicin | |
rpoC | 762537 | c.-833T>C | upstream_gene_variant | 0.18 | rifampicin | |
rpoC | 762551 | c.-819C>T | upstream_gene_variant | 0.17 | rifampicin | |
rpoB | 762857 | c.3051C>G | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoB | 762899 | c.3093G>C | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoC | 762920 | c.-450C>G | upstream_gene_variant | 0.15 | rifampicin | |
rpoB | 762929 | c.3123G>T | synonymous_variant | 0.2 | rifampicin | Not assoc w R - Interim |
rpoB | 762962 | c.3156C>T | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoC | 762983 | c.-387C>A | upstream_gene_variant | 0.16 | rifampicin | |
rpoB | 762995 | c.3189G>T | synonymous_variant | 0.21 | rifampicin | Not assoc w R - Interim |
rpoB | 763028 | c.3222T>C | synonymous_variant | 0.33 | rifampicin | Not assoc w R - Interim |
rpoB | 763031 | c.3225T>C | synonymous_variant | 1.0 | rifampicin | Not assoc w R |
rpoB | 763034 | c.3228C>G | synonymous_variant | 0.34 | rifampicin | Not assoc w R - Interim |
rpoB | 763040 | c.3234C>G | synonymous_variant | 0.35 | rifampicin | Not assoc w R - Interim |
rpoC | 763050 | c.-320C>T | upstream_gene_variant | 0.22 | rifampicin | |
rpoB | 763070 | c.3264T>C | synonymous_variant | 0.31 | rifampicin | Not assoc w R - Interim |
rpoC | 763076 | c.-294C>T | upstream_gene_variant | 0.17 | rifampicin | |
rpoB | 763085 | c.3279C>G | synonymous_variant | 0.28 | rifampicin | Not assoc w R - Interim |
rpoB | 763115 | c.3309T>C | synonymous_variant | 0.26 | rifampicin | Not assoc w R - Interim |
rpoB | 763127 | c.3321G>C | synonymous_variant | 0.23 | rifampicin | Not assoc w R - Interim |
rpoC | 763169 | c.-201A>G | upstream_gene_variant | 0.22 | rifampicin | |
rpoC | 763202 | c.-168A>G | upstream_gene_variant | 0.17 | rifampicin | |
rpoC | 763206 | c.-164_-163delAGinsTC | upstream_gene_variant | 0.17 | rifampicin | |
rpoC | 763408 | c.39T>C | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoC | 763411 | c.42T>G | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoC | 763414 | c.45T>C | synonymous_variant | 0.16 | rifampicin | |
rpoC | 763444 | c.75T>C | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoC | 763456 | c.87A>G | synonymous_variant | 0.22 | rifampicin | Not assoc w R - Interim |
rpoC | 763468 | c.99G>C | synonymous_variant | 0.21 | rifampicin | Not assoc w R - Interim |
rpoC | 763486 | c.117T>C | synonymous_variant | 0.27 | rifampicin | Not assoc w R - Interim |
rpoC | 763505 | c.136C>T | synonymous_variant | 0.17 | rifampicin | |
rpoC | 763636 | c.267T>G | synonymous_variant | 0.23 | rifampicin | |
rpoC | 763660 | c.291T>G | synonymous_variant | 0.2 | rifampicin | Not assoc w R - Interim |
rpoC | 763702 | c.333C>G | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoC | 763714 | c.345G>C | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoC | 763732 | c.363C>G | synonymous_variant | 0.19 | rifampicin | |
rpoC | 763744 | c.375G>C | synonymous_variant | 0.22 | rifampicin | |
rpoC | 763765 | c.396T>C | synonymous_variant | 0.26 | rifampicin | |
rpoC | 763771 | c.402C>T | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoC | 763781 | p.Ser138Ala | missense_variant | 0.26 | rifampicin | |
rpoC | 763807 | c.438T>C | synonymous_variant | 0.22 | rifampicin | Not assoc w R - Interim |
rpoC | 763836 | p.Ala156Val | missense_variant | 0.23 | rifampicin | |
rpoC | 763855 | c.486C>T | synonymous_variant | 0.2 | rifampicin | |
rpoC | 763858 | c.489A>G | synonymous_variant | 0.2 | rifampicin | |
rpoC | 763872 | p.Gly168Ala | missense_variant | 0.19 | rifampicin | |
rpoC | 763876 | p.Glu169Asp | missense_variant | 0.19 | rifampicin | |
rpoC | 763879 | c.510A>G | synonymous_variant | 0.19 | rifampicin | |
rpoC | 763888 | c.519G>T | synonymous_variant | 0.17 | rifampicin | |
rpoC | 763924 | c.555G>A | synonymous_variant | 0.17 | rifampicin | |
rpoC | 763936 | c.567C>G | synonymous_variant | 0.16 | rifampicin | |
rpoC | 763991 | p.Ile208Leu | missense_variant | 0.19 | rifampicin | |
rpoC | 763996 | c.627T>C | synonymous_variant | 0.2 | rifampicin | |
rpoC | 764005 | c.636G>C | synonymous_variant | 0.22 | rifampicin | Not assoc w R - Interim |
rpoC | 764024 | c.655T>C | synonymous_variant | 0.3 | rifampicin | |
rpoC | 764040 | p.Ser224Thr | missense_variant | 0.19 | rifampicin | |
rpoC | 764044 | c.675T>G | synonymous_variant | 0.2 | rifampicin | |
rpoC | 764056 | c.687G>T | synonymous_variant | 0.17 | rifampicin | |
rpoC | 764059 | c.690G>T | synonymous_variant | 0.21 | rifampicin | |
rpoC | 764080 | c.711C>T | synonymous_variant | 0.19 | rifampicin | |
rpoC | 764083 | c.714A>G | synonymous_variant | 0.34 | rifampicin | |
rpoC | 764098 | c.729A>G | synonymous_variant | 0.2 | rifampicin | Not assoc w R - Interim |
rpoC | 764131 | c.762T>C | synonymous_variant | 0.19 | rifampicin | |
rpoC | 764140 | c.771C>T | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoC | 764161 | c.792G>C | synonymous_variant | 0.19 | rifampicin | |
rpoC | 764203 | c.834G>C | synonymous_variant | 0.17 | rifampicin | |
rpoC | 764206 | p.Asp279Glu | missense_variant | 0.17 | rifampicin | |
rpoC | 764217 | p.Asn283Ser | missense_variant | 0.16 | rifampicin | |
rpoC | 764278 | c.909A>G | synonymous_variant | 0.32 | rifampicin | Not assoc w R - Interim |
rpoC | 764284 | c.915G>C | synonymous_variant | 0.18 | rifampicin | |
rpoC | 764317 | c.948C>G | synonymous_variant | 0.25 | rifampicin | |
rpoC | 764320 | c.951C>T | synonymous_variant | 0.23 | rifampicin | |
rpoC | 764339 | c.970C>T | synonymous_variant | 0.16 | rifampicin | |
rpoC | 764344 | c.975C>T | synonymous_variant | 0.18 | rifampicin | |
rpoC | 764347 | c.978G>C | synonymous_variant | 0.18 | rifampicin | |
rpoC | 764365 | c.996C>T | synonymous_variant | 0.2 | rifampicin | Not assoc w R - Interim |
rpoC | 764387 | c.1018T>C | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoC | 764405 | c.1036A>C | synonymous_variant | 0.21 | rifampicin | Not assoc w R - Interim |
rpoC | 764428 | c.1059G>T | synonymous_variant | 0.16 | rifampicin | |
rpoC | 764431 | c.1062G>C | synonymous_variant | 0.24 | rifampicin | Not assoc w R - Interim |
rpoC | 764434 | c.1065A>G | synonymous_variant | 0.24 | rifampicin | Not assoc w R - Interim |
rpoC | 764446 | c.1077T>C | synonymous_variant | 0.24 | rifampicin | |
rpoC | 764449 | c.1080G>C | synonymous_variant | 0.23 | rifampicin | |
rpoC | 764452 | c.1083T>G | synonymous_variant | 0.18 | rifampicin | |
rpoC | 764455 | c.1086G>T | synonymous_variant | 0.17 | rifampicin | |
rpoC | 764458 | c.1089G>C | synonymous_variant | 0.25 | rifampicin | Not assoc w R - Interim |
rpoC | 764461 | c.1092A>G | synonymous_variant | 0.24 | rifampicin | Not assoc w R - Interim |
rpoC | 764497 | c.1128A>G | synonymous_variant | 0.22 | rifampicin | Not assoc w R - Interim |
rpoC | 764500 | c.1131C>G | synonymous_variant | 0.21 | rifampicin | |
rpoC | 764521 | c.1152T>C | synonymous_variant | 0.23 | rifampicin | Not assoc w R - Interim |
rpoC | 764536 | c.1167G>C | synonymous_variant | 0.17 | rifampicin | |
rpoC | 764539 | c.1170C>G | synonymous_variant | 0.27 | rifampicin | Not assoc w R - Interim |
rpoC | 764548 | c.1179G>A | synonymous_variant | 0.17 | rifampicin | |
rpoC | 764554 | c.1185C>T | synonymous_variant | 0.2 | rifampicin | |
rpoC | 764575 | c.1206T>G | synonymous_variant | 0.26 | rifampicin | Not assoc w R - Interim |
rpoC | 764578 | c.1209C>G | synonymous_variant | 0.16 | rifampicin | |
rpoC | 764611 | c.1242G>T | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoC | 764626 | c.1257C>T | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoC | 764650 | c.1281G>T | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoC | 764668 | c.1299C>T | synonymous_variant | 0.25 | rifampicin | Not assoc w R - Interim |
rpoC | 764752 | c.1383G>C | synonymous_variant | 0.24 | rifampicin | Not assoc w R - Interim |
rpoC | 764764 | c.1395T>C | synonymous_variant | 0.29 | rifampicin | Not assoc w R - Interim |
rpoC | 764767 | c.1398G>C | synonymous_variant | 0.16 | rifampicin | |
rpoC | 764791 | c.1422C>G | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoC | 764800 | c.1431G>A | synonymous_variant | 0.16 | rifampicin | |
rpoC | 764803 | c.1434C>T | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoC | 764809 | c.1440C>T | synonymous_variant | 0.23 | rifampicin | Not assoc w R |
rpoC | 764815 | c.1446A>G | synonymous_variant | 0.22 | rifampicin | Not assoc w R - Interim |
rpoC | 764830 | c.1461C>G | synonymous_variant | 0.2 | rifampicin | |
rpoC | 764833 | c.1464A>G | synonymous_variant | 0.26 | rifampicin | |
rpoC | 764872 | c.1503A>G | synonymous_variant | 0.22 | rifampicin | Not assoc w R - Interim |
rpoC | 764888 | c.1519_1521delTTGinsCTC | synonymous_variant | 0.19 | rifampicin | |
rpoC | 764911 | c.1542A>G | synonymous_variant | 0.16 | rifampicin | |
rpoC | 764918 | p.Val517Met | missense_variant | 0.15 | rifampicin | |
rpoC | 764923 | c.1554A>G | synonymous_variant | 0.21 | rifampicin | Not assoc w R - Interim |
rpoC | 764948 | c.1579T>C | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoC | 765409 | c.2040T>C | synonymous_variant | 0.21 | rifampicin | |
rpoC | 765412 | c.2043T>C | synonymous_variant | 0.15 | rifampicin | |
rpoC | 765421 | c.2052C>G | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoC | 765451 | c.2082C>T | synonymous_variant | 0.21 | rifampicin | |
rpoC | 765478 | c.2109T>C | synonymous_variant | 0.28 | rifampicin | Not assoc w R - Interim |
rpoC | 765499 | c.2130C>A | synonymous_variant | 0.19 | rifampicin | |
rpoC | 765529 | c.2160C>T | synonymous_variant | 0.17 | rifampicin | |
rpoC | 765541 | c.2172C>G | synonymous_variant | 0.17 | rifampicin | |
rpoC | 765547 | c.2178C>A | synonymous_variant | 0.27 | rifampicin | |
rpoC | 765556 | c.2187G>C | synonymous_variant | 0.24 | rifampicin | |
rpoC | 765562 | c.2193G>C | synonymous_variant | 0.23 | rifampicin | |
rpoC | 765583 | c.2214G>T | synonymous_variant | 0.23 | rifampicin | |
rpoC | 765628 | c.2259G>C | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoC | 765700 | c.2331T>C | synonymous_variant | 0.23 | rifampicin | Not assoc w R - Interim |
rpoC | 765734 | c.2365T>C | synonymous_variant | 0.23 | rifampicin | Not assoc w R - Interim |
rpoC | 765784 | c.2415C>G | synonymous_variant | 0.22 | rifampicin | |
rpoC | 765787 | c.2418C>T | synonymous_variant | 0.21 | rifampicin | |
rpoC | 765793 | c.2424C>G | synonymous_variant | 0.22 | rifampicin | |
rpoC | 765796 | c.2427C>T | synonymous_variant | 0.22 | rifampicin | |
rpoC | 765811 | c.2442T>C | synonymous_variant | 0.21 | rifampicin | Not assoc w R - Interim |
rpoC | 765835 | c.2466C>T | synonymous_variant | 0.23 | rifampicin | Not assoc w R - Interim |
rpoC | 765883 | c.2514C>G | synonymous_variant | 0.25 | rifampicin | |
rpoC | 765886 | c.2517C>G | synonymous_variant | 0.25 | rifampicin | |
rpoC | 765892 | c.2523T>C | synonymous_variant | 0.27 | rifampicin | Not assoc w R - Interim |
rpoC | 765910 | c.2541G>C | synonymous_variant | 0.2 | rifampicin | Not assoc w R - Interim |
rpoC | 765934 | c.2565C>T | synonymous_variant | 0.17 | rifampicin | |
rpoC | 765952 | c.2583G>C | synonymous_variant | 0.24 | rifampicin | |
rpoC | 765967 | c.2598C>T | synonymous_variant | 0.25 | rifampicin | Not assoc w R - Interim |
rpoC | 765979 | c.2610C>G | synonymous_variant | 0.23 | rifampicin | Not assoc w R - Interim |
rpoC | 765994 | c.2625A>T | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoC | 766105 | c.2736C>T | synonymous_variant | 0.19 | rifampicin | |
rpoC | 766274 | p.Ala969Thr | missense_variant | 0.15 | rifampicin | |
rpoC | 766280 | p.Ser971Gly | missense_variant | 0.15 | rifampicin | |
rpoC | 766315 | c.2946C>G | synonymous_variant | 0.21 | rifampicin | |
rpoC | 766381 | c.3012C>T | synonymous_variant | 0.18 | rifampicin | |
rpoC | 766384 | c.3015A>G | synonymous_variant | 0.22 | rifampicin | |
rpoC | 766408 | c.3039C>T | synonymous_variant | 0.29 | rifampicin | Not assoc w R - Interim |
rpoC | 766417 | c.3048C>T | synonymous_variant | 0.18 | rifampicin | |
rpoC | 766426 | c.3057C>T | synonymous_variant | 0.29 | rifampicin | |
rpoC | 766483 | c.3114G>C | synonymous_variant | 0.19 | rifampicin | |
rpoC | 766486 | c.3117A>G | synonymous_variant | 0.32 | rifampicin | |
rpoC | 766492 | c.3123T>C | synonymous_variant | 0.21 | rifampicin | |
rpoC | 766495 | c.3126C>T | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoC | 766540 | c.3171C>T | synonymous_variant | 0.18 | rifampicin | |
rpoC | 766543 | c.3174C>T | synonymous_variant | 0.27 | rifampicin | |
rpoC | 766549 | c.3180G>C | synonymous_variant | 0.23 | rifampicin | |
rpoC | 766570 | c.3201T>C | synonymous_variant | 0.24 | rifampicin | |
rpoC | 766573 | c.3204T>C | synonymous_variant | 0.29 | rifampicin | |
rpoC | 766579 | c.3210C>T | synonymous_variant | 0.2 | rifampicin | Not assoc w R - Interim |
rpoC | 766585 | c.3216T>C | synonymous_variant | 0.28 | rifampicin | |
rpoC | 766594 | c.3225G>C | synonymous_variant | 0.26 | rifampicin | |
rpoC | 766607 | p.Ile1080Leu | missense_variant | 0.3 | rifampicin | |
rpoC | 766657 | c.3288A>G | synonymous_variant | 0.28 | rifampicin | |
rpoC | 766660 | c.3291G>A | synonymous_variant | 0.15 | rifampicin | |
rpoC | 766666 | c.3297C>T | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoC | 766672 | c.3303T>C | synonymous_variant | 0.25 | rifampicin | |
rpoC | 766726 | c.3357T>C | synonymous_variant | 0.24 | rifampicin | |
rpoC | 766765 | c.3396A>C | synonymous_variant | 0.25 | rifampicin | Not assoc w R - Interim |
rpoC | 766774 | c.3405T>C | synonymous_variant | 0.28 | rifampicin | |
rpoC | 766804 | c.3435A>G | synonymous_variant | 0.22 | rifampicin | Not assoc w R - Interim |
rpoC | 766843 | c.3474T>G | synonymous_variant | 0.14 | rifampicin | Not assoc w R - Interim |
rpoC | 766864 | c.3495G>C | synonymous_variant | 0.21 | rifampicin | |
rpoC | 766894 | c.3525T>C | synonymous_variant | 0.17 | rifampicin | |
rpoC | 766895 | c.3526T>C | synonymous_variant | 0.17 | rifampicin | |
rpoC | 766903 | c.3534C>T | synonymous_variant | 0.2 | rifampicin | |
rpoC | 766918 | c.3549C>T | synonymous_variant | 0.2 | rifampicin | Not assoc w R - Interim |
rpoC | 766933 | c.3564A>G | synonymous_variant | 0.17 | rifampicin | |
rpoC | 766945 | c.3576A>G | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoC | 766963 | c.3594T>C | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoC | 766972 | c.3603G>C | synonymous_variant | 0.22 | rifampicin | |
rpoC | 766975 | c.3606C>T | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoC | 766996 | c.3627C>T | synonymous_variant | 0.31 | rifampicin | Not assoc w R - Interim |
rpoC | 767002 | c.3633G>C | synonymous_variant | 0.28 | rifampicin | Not assoc w R - Interim |
rpoC | 767033 | c.3664_3666delTCGinsAGT | synonymous_variant | 0.26 | rifampicin | |
rpoC | 767059 | c.3690T>G | synonymous_variant | 0.29 | rifampicin | Not assoc w R - Interim |
rpoC | 767062 | c.3693C>A | synonymous_variant | 0.29 | rifampicin | |
rpoC | 767098 | c.3729T>C | synonymous_variant | 0.28 | rifampicin | Not assoc w R - Interim |
rpoC | 767119 | c.3750A>G | synonymous_variant | 0.24 | rifampicin | Not assoc w R - Interim |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 | bedaquiline | Not assoc w R - Interim |
clofazimine | Not assoc w R | |||||
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 | bedaquiline | Not assoc w R - Interim |
clofazimine | Not assoc w R | |||||
mmpL5 | 776182 | p.Asp767Asn | missense_variant | 1.0 | bedaquiline | Not assoc w R |
clofazimine | Not assoc w R | |||||
mmpS5 | 779615 | c.-710C>G | upstream_gene_variant | 1.0 | bedaquiline | |
clofazimine | ||||||
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 0.96 | streptomycin | Not assoc w R |
rpsL | 781571 | c.12C>T | synonymous_variant | 0.2 | streptomycin | |
rpsL | 781608 | p.Ser17Ala | missense_variant | 0.34 | streptomycin | |
rpsL | 781628 | c.69T>C | synonymous_variant | 0.31 | streptomycin | Not assoc w R - Interim |
rpsL | 781631 | c.72G>C | synonymous_variant | 0.18 | streptomycin | |
rpsL | 781649 | c.90T>C | synonymous_variant | 0.35 | streptomycin | |
rpsL | 781655 | c.96T>C | synonymous_variant | 0.33 | streptomycin | |
rpsL | 781658 | c.99A>G | synonymous_variant | 0.22 | streptomycin | |
rpsL | 781664 | c.105C>T | synonymous_variant | 0.22 | streptomycin | |
rpsL | 781667 | c.108C>G | synonymous_variant | 0.21 | streptomycin | |
rpsL | 781709 | c.150G>C | synonymous_variant | 0.18 | streptomycin | Not assoc w R - Interim |
rpsL | 781715 | c.156T>C | synonymous_variant | 0.25 | streptomycin | |
rpsL | 781718 | c.159C>G | synonymous_variant | 0.25 | streptomycin | |
rpsL | 781721 | c.162C>G | synonymous_variant | 0.22 | streptomycin | |
rpsL | 781728 | c.169T>C | synonymous_variant | 0.31 | streptomycin | |
rpsL | 781742 | c.183C>T | synonymous_variant | 0.22 | streptomycin | |
rpsL | 781760 | c.201T>C | synonymous_variant | 0.33 | streptomycin | |
rpsL | 781808 | c.249C>T | synonymous_variant | 0.38 | streptomycin | |
rpsL | 781832 | c.273T>C | synonymous_variant | 0.38 | streptomycin | |
rpsL | 781841 | c.282C>G | synonymous_variant | 0.18 | streptomycin | |
rpsL | 781847 | c.288G>A | synonymous_variant | 0.17 | streptomycin | |
rpsL | 781868 | c.309T>C | synonymous_variant | 0.32 | streptomycin | |
rpsL | 781871 | c.312G>C | synonymous_variant | 0.32 | streptomycin | |
rpsL | 781877 | c.318T>A | synonymous_variant | 0.15 | streptomycin | |
rpsL | 781892 | c.333A>G | synonymous_variant | 0.29 | streptomycin | |
rpsL | 781898 | c.339A>T | synonymous_variant | 0.3 | streptomycin | |
rpsL | 781916 | c.357T>C | synonymous_variant | 0.25 | streptomycin | |
rpsL | 781929 | p.Gly124Ser | missense_variant | 0.23 | streptomycin | Uncertain significance |
rplC | 800567 | c.-242A>G | upstream_gene_variant | 0.24 | linezolid | |
rplC | 800579 | c.-230C>T | upstream_gene_variant | 0.23 | linezolid | |
rplC | 800582 | c.-227C>G | upstream_gene_variant | 0.24 | linezolid | |
rplC | 800612 | c.-197A>G | upstream_gene_variant | 0.24 | linezolid | |
rplC | 800618 | c.-191T>C | upstream_gene_variant | 0.25 | linezolid | |
rplC | 800648 | c.-161A>C | upstream_gene_variant | 0.21 | linezolid | |
rplC | 800693 | c.-116A>C | upstream_gene_variant | 0.26 | linezolid | |
rplC | 800714 | c.-95C>T | upstream_gene_variant | 0.22 | linezolid | |
rplC | 800715 | c.-94A>C | upstream_gene_variant | 0.22 | linezolid | |
rplC | 800723 | c.-86C>G | upstream_gene_variant | 0.22 | linezolid | |
rplC | 800759 | c.-50C>T | upstream_gene_variant | 0.16 | linezolid | |
rplC | 800771 | c.-38C>T | upstream_gene_variant | 0.18 | linezolid | |
rplC | 800844 | c.36T>C | synonymous_variant | 0.18 | linezolid | |
rplC | 801174 | c.366T>C | synonymous_variant | 0.16 | linezolid | |
rplC | 801210 | c.402T>C | synonymous_variant | 0.18 | linezolid | |
rplC | 801222 | c.414T>C | synonymous_variant | 0.16 | linezolid | |
rplC | 801246 | c.438C>G | synonymous_variant | 0.2 | linezolid | |
rplC | 801252 | c.444G>C | synonymous_variant | 0.19 | linezolid | |
rplC | 801312 | c.504G>C | synonymous_variant | 0.19 | linezolid | |
Rv1129c | 1254562 | c.-28T>C | upstream_gene_variant | 1.0 | levofloxacin | Not assoc w R |
moxifloxacin | Not assoc w R | |||||
isoniazid | Not assoc w R | |||||
rifampicin | Not assoc w R | |||||
fbiC | 1303545 | c.615A>G | synonymous_variant | 0.18 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304757 | c.1827A>G | synonymous_variant | 0.16 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304784 | c.1854T>G | synonymous_variant | 0.2 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304787 | c.1857T>C | synonymous_variant | 0.19 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304799 | c.1869G>C | synonymous_variant | 0.2 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304832 | c.1902C>T | synonymous_variant | 0.27 | pretomanid | |
delamanid | Not assoc w R - Interim | |||||
clofazimine | Not assoc w R - Interim | |||||
fbiC | 1304856 | c.1926C>G | synonymous_variant | 0.23 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304893 | p.Gly655Ser | missense_variant | 0.24 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304915 | p.Asp662Gly | missense_variant | 0.25 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304937 | c.2007G>C | synonymous_variant | 0.17 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304940 | c.2010A>G | synonymous_variant | 0.17 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304946 | c.2016G>C | synonymous_variant | 0.17 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304958 | c.2028T>G | synonymous_variant | 0.16 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
sigE | 1364727 | c.315C>T | synonymous_variant | 0.17 | pyrazinamide | |
sigE | 1364820 | c.408A>G | synonymous_variant | 0.16 | pyrazinamide | |
sigE | 1364866 | p.Ala152Thr | missense_variant | 0.21 | pyrazinamide | |
sigE | 1364889 | c.477A>G | synonymous_variant | 0.28 | pyrazinamide | Not assoc w R - Interim |
sigE | 1364898 | c.486C>T | synonymous_variant | 0.19 | pyrazinamide | |
sigE | 1364919 | c.507T>C | synonymous_variant | 0.2 | pyrazinamide | |
sigE | 1364964 | c.552T>C | synonymous_variant | 0.16 | pyrazinamide | Not assoc w R - Interim |
Rv1258c | 1406760 | c.580_581insC | frameshift_variant | 0.98 | streptomycin | Uncertain significance |
pyrazinamide | Uncertain significance | |||||
isoniazid | Uncertain significance | |||||
atpE | 1461161 | c.117C>T | synonymous_variant | 0.19 | bedaquiline | |
atpE | 1461167 | c.123G>T | synonymous_variant | 0.18 | bedaquiline | |
atpE | 1461170 | c.126A>G | synonymous_variant | 0.19 | bedaquiline | |
atpE | 1461185 | c.141G>A | synonymous_variant | 0.24 | bedaquiline | |
atpE | 1461197 | c.153A>C | synonymous_variant | 0.24 | bedaquiline | |
atpE | 1461219 | c.175T>C | synonymous_variant | 0.28 | bedaquiline | |
atpE | 1461224 | c.180T>C | synonymous_variant | 0.22 | bedaquiline | |
atpE | 1461230 | c.186G>T | synonymous_variant | 0.21 | bedaquiline | |
atpE | 1461233 | c.189A>C | synonymous_variant | 0.23 | bedaquiline | |
atpE | 1461254 | c.210T>C | synonymous_variant | 0.2 | bedaquiline | |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 | kanamycin | |
capreomycin | ||||||
streptomycin | ||||||
amikacin | ||||||
rrs | 1471934 | n.89A>G | non_coding_transcript_exon_variant | 0.15 | kanamycin | |
capreomycin | Uncertain significance | |||||
streptomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1471970 | n.125G>A | non_coding_transcript_exon_variant | 0.23 | kanamycin | Uncertain significance |
capreomycin | Uncertain significance | |||||
streptomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1472030 | n.185G>T | non_coding_transcript_exon_variant | 0.22 | kanamycin | |
capreomycin | ||||||
streptomycin | ||||||
amikacin | ||||||
rrs | 1472031 | n.186G>T | non_coding_transcript_exon_variant | 0.23 | kanamycin | |
capreomycin | ||||||
streptomycin | ||||||
amikacin | ||||||
rrs | 1472033 | n.188A>G | non_coding_transcript_exon_variant | 0.21 | kanamycin | |
capreomycin | ||||||
streptomycin | ||||||
amikacin | ||||||
rrs | 1472034 | n.189T>C | non_coding_transcript_exon_variant | 0.2 | kanamycin | |
capreomycin | ||||||
streptomycin | ||||||
amikacin | ||||||
rrs | 1472040 | n.195T>C | non_coding_transcript_exon_variant | 0.25 | kanamycin | |
capreomycin | ||||||
streptomycin | ||||||
amikacin | ||||||
rrs | 1472053 | n.211_212delGC | non_coding_transcript_exon_variant | 0.3 | kanamycin | Uncertain significance |
capreomycin | Uncertain significance | |||||
streptomycin | ||||||
amikacin | Uncertain significance | |||||
rrs | 1472061 | n.216A>T | non_coding_transcript_exon_variant | 0.32 | kanamycin | Uncertain significance |
capreomycin | Uncertain significance | |||||
streptomycin | ||||||
amikacin | Uncertain significance | |||||
rrs | 1472075 | n.230A>G | non_coding_transcript_exon_variant | 0.35 | kanamycin | Uncertain significance |
capreomycin | Uncertain significance | |||||
streptomycin | ||||||
amikacin | Uncertain significance | |||||
rrs | 1472686 | n.841G>A | non_coding_transcript_exon_variant | 0.16 | kanamycin | |
capreomycin | ||||||
streptomycin | ||||||
amikacin | ||||||
rrs | 1472969 | n.1124A>G | non_coding_transcript_exon_variant | 0.27 | kanamycin | Uncertain significance |
capreomycin | Uncertain significance | |||||
streptomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1472970 | n.1125C>G | non_coding_transcript_exon_variant | 0.17 | kanamycin | Uncertain significance |
capreomycin | Uncertain significance | |||||
streptomycin | ||||||
amikacin | Uncertain significance | |||||
rrs | 1472977 | n.1132G>C | non_coding_transcript_exon_variant | 0.16 | kanamycin | Uncertain significance |
capreomycin | Uncertain significance | |||||
streptomycin | ||||||
amikacin | Uncertain significance | |||||
rrs | 1472978 | n.1133T>C | non_coding_transcript_exon_variant | 0.27 | kanamycin | Uncertain significance |
capreomycin | Uncertain significance | |||||
streptomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1473123 | n.1278delAinsTT | non_coding_transcript_exon_variant | 0.29 | kanamycin | |
capreomycin | ||||||
streptomycin | ||||||
amikacin | ||||||
rrl | 1473758 | n.101G>T | non_coding_transcript_exon_variant | 0.24 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1473797 | n.140G>T | non_coding_transcript_exon_variant | 0.2 | capreomycin | |
linezolid | ||||||
rrl | 1473806 | n.149C>T | non_coding_transcript_exon_variant | 0.38 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1473813 | n.156C>T | non_coding_transcript_exon_variant | 0.23 | capreomycin | |
linezolid | ||||||
rrl | 1473839 | n.182G>T | non_coding_transcript_exon_variant | 0.2 | capreomycin | |
linezolid | ||||||
rrl | 1473877 | n.220G>A | non_coding_transcript_exon_variant | 0.31 | capreomycin | |
linezolid | ||||||
rrl | 1473887 | n.230T>A | non_coding_transcript_exon_variant | 0.28 | capreomycin | |
linezolid | ||||||
rrl | 1473888 | n.231T>A | non_coding_transcript_exon_variant | 0.28 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1473899 | n.242A>G | non_coding_transcript_exon_variant | 0.16 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1473916 | n.259C>A | non_coding_transcript_exon_variant | 0.2 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1473937 | n.280C>T | non_coding_transcript_exon_variant | 0.21 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1473943 | n.286G>T | non_coding_transcript_exon_variant | 0.2 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1473995 | n.338G>T | non_coding_transcript_exon_variant | 0.21 | capreomycin | |
linezolid | ||||||
rrl | 1474009 | n.352A>G | non_coding_transcript_exon_variant | 0.19 | capreomycin | |
linezolid | ||||||
rrl | 1474103 | n.446A>T | non_coding_transcript_exon_variant | 0.34 | capreomycin | |
linezolid | ||||||
rrl | 1474140 | n.483C>T | non_coding_transcript_exon_variant | 0.31 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1474151 | n.494C>T | non_coding_transcript_exon_variant | 0.29 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1474632 | n.975G>T | non_coding_transcript_exon_variant | 0.23 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1474639 | n.982G>A | non_coding_transcript_exon_variant | 0.22 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1474717 | n.1060A>T | non_coding_transcript_exon_variant | 0.22 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1474794 | n.1137C>A | non_coding_transcript_exon_variant | 0.16 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1474831 | n.1174A>G | non_coding_transcript_exon_variant | 0.25 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1475061 | n.1404C>T | non_coding_transcript_exon_variant | 0.36 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1475213 | n.1556C>T | non_coding_transcript_exon_variant | 0.19 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1475266 | n.1609T>C | non_coding_transcript_exon_variant | 0.32 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1475273 | n.1616T>G | non_coding_transcript_exon_variant | 0.32 | capreomycin | |
linezolid | ||||||
rrl | 1475289 | n.1632G>A | non_coding_transcript_exon_variant | 0.26 | capreomycin | |
linezolid | ||||||
rrl | 1475290 | n.1633A>G | non_coding_transcript_exon_variant | 0.26 | capreomycin | |
linezolid | ||||||
rrl | 1475291 | n.1634A>C | non_coding_transcript_exon_variant | 0.26 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1475315 | n.1658A>T | non_coding_transcript_exon_variant | 0.32 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1475333 | n.1676T>C | non_coding_transcript_exon_variant | 0.29 | capreomycin | |
linezolid | ||||||
rrl | 1475355 | n.1698C>T | non_coding_transcript_exon_variant | 0.33 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1475369 | n.1712G>A | non_coding_transcript_exon_variant | 0.29 | capreomycin | |
linezolid | ||||||
rrl | 1475403 | n.1746T>A | non_coding_transcript_exon_variant | 0.25 | capreomycin | |
linezolid | ||||||
rrl | 1475429 | n.1772G>A | non_coding_transcript_exon_variant | 0.31 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1475505 | n.1848G>A | non_coding_transcript_exon_variant | 0.16 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1475526 | n.1869C>A | non_coding_transcript_exon_variant | 0.38 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1475608 | n.1951T>C | non_coding_transcript_exon_variant | 0.25 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1475638 | n.1981C>T | non_coding_transcript_exon_variant | 0.18 | capreomycin | |
linezolid | ||||||
rrl | 1475659 | n.2002G>A | non_coding_transcript_exon_variant | 0.3 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 0.18 | capreomycin | |
linezolid | ||||||
rrl | 1475988 | n.2331A>G | non_coding_transcript_exon_variant | 0.41 | capreomycin | Not assoc w R |
linezolid | Uncertain significance | |||||
rrl | 1475999 | n.2342G>T | non_coding_transcript_exon_variant | 0.2 | capreomycin | |
linezolid | ||||||
rrl | 1476035 | n.2378G>A | non_coding_transcript_exon_variant | 0.3 | capreomycin | |
linezolid | ||||||
rrl | 1476049 | n.2392C>T | non_coding_transcript_exon_variant | 0.17 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1476086 | n.2429G>A | non_coding_transcript_exon_variant | 0.25 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1476089 | n.2432T>C | non_coding_transcript_exon_variant | 0.24 | capreomycin | |
linezolid | ||||||
rrl | 1476115 | n.2458T>C | non_coding_transcript_exon_variant | 0.3 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1476224 | n.2567A>G | non_coding_transcript_exon_variant | 0.3 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.26 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1476281 | n.2624T>C | non_coding_transcript_exon_variant | 0.3 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1476297 | n.2640C>T | non_coding_transcript_exon_variant | 0.21 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1476299 | n.2642C>T | non_coding_transcript_exon_variant | 0.2 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1476580 | n.2923G>A | non_coding_transcript_exon_variant | 0.3 | capreomycin | |
linezolid | ||||||
rrl | 1476595 | n.2938C>T | non_coding_transcript_exon_variant | 0.19 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1476597 | n.2940G>A | non_coding_transcript_exon_variant | 0.28 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1476602 | n.2945G>A | non_coding_transcript_exon_variant | 0.19 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1476619 | n.2962C>T | non_coding_transcript_exon_variant | 0.3 | capreomycin | Not assoc w R |
linezolid | Uncertain significance | |||||
rrl | 1476628 | n.2971T>A | non_coding_transcript_exon_variant | 0.26 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1476726 | n.3069A>G | non_coding_transcript_exon_variant | 0.15 | capreomycin | |
linezolid | ||||||
rrl | 1476732 | n.3075T>C | non_coding_transcript_exon_variant | 0.16 | capreomycin | |
linezolid | ||||||
inhA | 1673547 | c.-655T>C | upstream_gene_variant | 0.21 | isoniazid | |
ethionamide | ||||||
inhA | 1673955 | c.-247G>C | upstream_gene_variant | 0.16 | isoniazid | |
ethionamide | ||||||
inhA | 1674018 | c.-184G>C | upstream_gene_variant | 0.15 | isoniazid | |
ethionamide | ||||||
inhA | 1674033 | c.-169T>C | upstream_gene_variant | 0.17 | isoniazid | |
ethionamide | ||||||
inhA | 1674840 | c.639C>T | synonymous_variant | 0.18 | isoniazid | Not assoc w R - Interim |
ethionamide | ||||||
inhA | 1674846 | p.Ile215Met | missense_variant | 0.16 | isoniazid | |
ethionamide | ||||||
inhA | 1674870 | c.669T>C | synonymous_variant | 0.26 | isoniazid | |
ethionamide | ||||||
inhA | 1674903 | c.702T>C | synonymous_variant | 0.2 | isoniazid | |
ethionamide | ||||||
inhA | 1674904 | p.Ala235Pro | missense_variant | 0.19 | isoniazid | |
ethionamide | ||||||
rpsA | 1833256 | c.-286C>G | upstream_gene_variant | 0.2 | pyrazinamide | |
rpsA | 1833262 | c.-280T>A | upstream_gene_variant | 0.22 | pyrazinamide | |
rpsA | 1833271 | c.-271G>A | upstream_gene_variant | 0.19 | pyrazinamide | |
rpsA | 1833283 | c.-259C>G | upstream_gene_variant | 0.21 | pyrazinamide | |
rpsA | 1833295 | c.-247C>G | upstream_gene_variant | 0.22 | pyrazinamide | |
rpsA | 1833298 | c.-244G>A | upstream_gene_variant | 0.21 | pyrazinamide | |
rpsA | 1833310 | c.-232T>C | upstream_gene_variant | 0.19 | pyrazinamide | |
rpsA | 1833554 | p.Thr5Ala | missense_variant | 0.16 | pyrazinamide | Uncertain significance |
rpsA | 1833589 | c.48A>T | synonymous_variant | 0.26 | pyrazinamide | |
rpsA | 1833595 | c.54T>C | synonymous_variant | 0.18 | pyrazinamide | |
rpsA | 1833604 | c.63C>T | synonymous_variant | 0.17 | pyrazinamide | |
rpsA | 1833610 | c.69C>A | synonymous_variant | 0.19 | pyrazinamide | |
rpsA | 1833661 | c.120A>G | synonymous_variant | 0.2 | pyrazinamide | |
rpsA | 1833664 | c.123C>A | synonymous_variant | 0.2 | pyrazinamide | |
rpsA | 1833667 | c.126C>G | synonymous_variant | 0.2 | pyrazinamide | |
rpsA | 1833694 | c.153G>T | synonymous_variant | 0.2 | pyrazinamide | |
rpsA | 1833703 | c.162C>T | synonymous_variant | 0.16 | pyrazinamide | Not assoc w R - Interim |
rpsA | 1833718 | c.177C>T | synonymous_variant | 0.17 | pyrazinamide | |
rpsA | 1833724 | c.183C>G | synonymous_variant | 0.36 | pyrazinamide | |
rpsA | 1833727 | c.186G>C | synonymous_variant | 0.34 | pyrazinamide | |
rpsA | 1833742 | c.201A>G | synonymous_variant | 0.19 | pyrazinamide | |
rpsA | 1833745 | c.204G>C | synonymous_variant | 0.35 | pyrazinamide | |
rpsA | 1833754 | c.213G>A | synonymous_variant | 0.18 | pyrazinamide | |
rpsA | 1833760 | c.219C>T | synonymous_variant | 0.16 | pyrazinamide | Not assoc w R - Interim |
rpsA | 1833782 | p.Ser81Thr | missense_variant | 0.16 | pyrazinamide | |
rpsA | 1833787 | c.246C>G | synonymous_variant | 0.16 | pyrazinamide | |
rpsA | 1833802 | c.261A>G | synonymous_variant | 0.33 | pyrazinamide | |
rpsA | 1833841 | c.300C>G | synonymous_variant | 0.32 | pyrazinamide | |
rpsA | 1833847 | c.306C>G | synonymous_variant | 0.33 | pyrazinamide | |
rpsA | 1833850 | c.309C>G | synonymous_variant | 0.23 | pyrazinamide | |
rpsA | 1833856 | c.315A>G | synonymous_variant | 0.34 | pyrazinamide | |
rpsA | 1833874 | c.333T>C | synonymous_variant | 0.35 | pyrazinamide | |
rpsA | 1833892 | c.351G>A | synonymous_variant | 0.19 | pyrazinamide | |
rpsA | 1833904 | c.363G>A | synonymous_variant | 0.23 | pyrazinamide | |
rpsA | 1833928 | c.387G>C | synonymous_variant | 0.37 | pyrazinamide | |
rpsA | 1833934 | c.393C>T | synonymous_variant | 0.25 | pyrazinamide | Not assoc w R - Interim |
rpsA | 1833949 | c.408T>C | synonymous_variant | 0.36 | pyrazinamide | |
rpsA | 1833970 | c.429G>C | synonymous_variant | 0.24 | pyrazinamide | |
rpsA | 1833979 | c.438T>C | synonymous_variant | 0.34 | pyrazinamide | |
rpsA | 1834000 | c.459G>C | synonymous_variant | 0.32 | pyrazinamide | |
rpsA | 1834015 | c.474G>C | synonymous_variant | 0.17 | pyrazinamide | |
rpsA | 1834024 | c.483G>A | synonymous_variant | 0.19 | pyrazinamide | |
rpsA | 1834030 | c.489C>G | synonymous_variant | 0.29 | pyrazinamide | |
rpsA | 1834051 | c.510G>A | synonymous_variant | 0.3 | pyrazinamide | |
rpsA | 1834177 | c.636A>C | synonymous_variant | 1.0 | pyrazinamide | Not assoc w R - Interim |
rpsA | 1834249 | c.708T>C | synonymous_variant | 0.22 | pyrazinamide | |
rpsA | 1834261 | c.720A>G | synonymous_variant | 0.19 | pyrazinamide | Not assoc w R - Interim |
rpsA | 1834306 | c.765T>C | synonymous_variant | 0.23 | pyrazinamide | |
rpsA | 1834348 | c.807T>C | synonymous_variant | 0.31 | pyrazinamide | Not assoc w R - Interim |
rpsA | 1834366 | c.825A>G | synonymous_variant | 0.35 | pyrazinamide | Not assoc w R - Interim |
rpsA | 1834375 | c.834G>A | synonymous_variant | 0.18 | pyrazinamide | |
rpsA | 1834396 | c.855G>C | synonymous_variant | 0.35 | pyrazinamide | |
rpsA | 1834411 | c.870T>C | synonymous_variant | 0.34 | pyrazinamide | |
rpsA | 1834417 | c.876G>C | synonymous_variant | 0.32 | pyrazinamide | |
rpsA | 1834423 | c.882G>C | synonymous_variant | 0.2 | pyrazinamide | |
rpsA | 1834451 | c.910T>C | synonymous_variant | 0.24 | pyrazinamide | |
rpsA | 1834456 | c.915T>G | synonymous_variant | 0.23 | pyrazinamide | |
rpsA | 1834468 | c.927A>G | synonymous_variant | 0.23 | pyrazinamide | |
rpsA | 1834489 | c.948T>C | synonymous_variant | 0.23 | pyrazinamide | |
rpsA | 1834495 | c.954G>A | synonymous_variant | 0.24 | pyrazinamide | |
rpsA | 1834528 | c.987T>C | synonymous_variant | 0.31 | pyrazinamide | |
rpsA | 1834546 | c.1005T>C | synonymous_variant | 0.32 | pyrazinamide | |
rpsA | 1834609 | c.1068T>C | synonymous_variant | 0.27 | pyrazinamide | |
rpsA | 1834615 | c.1074C>T | synonymous_variant | 0.27 | pyrazinamide | |
rpsA | 1834618 | c.1077G>C | synonymous_variant | 0.19 | pyrazinamide | |
rpsA | 1834633 | c.1092A>G | synonymous_variant | 0.25 | pyrazinamide | |
rpsA | 1834639 | c.1098T>C | synonymous_variant | 0.26 | pyrazinamide | |
rpsA | 1834690 | c.1149T>C | synonymous_variant | 0.25 | pyrazinamide | |
tsnR | 1853370 | c.-236_-234delGCAinsTCG | upstream_gene_variant | 0.23 | linezolid | |
tsnR | 1853387 | c.-219T>G | upstream_gene_variant | 0.27 | linezolid | |
tsnR | 1853394 | c.-212_-211delCTinsGC | upstream_gene_variant | 0.28 | linezolid | |
tsnR | 1853420 | c.-186T>G | upstream_gene_variant | 0.29 | linezolid | |
tsnR | 1853459 | c.-147G>C | upstream_gene_variant | 0.21 | linezolid | |
tsnR | 1853477 | c.-129T>C | upstream_gene_variant | 0.17 | linezolid | |
tsnR | 1853574 | c.-32T>C | upstream_gene_variant | 1.0 | linezolid | |
tsnR | 1854300 | p.Leu232Pro | missense_variant | 1.0 | linezolid | Not assoc w R |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 | capreomycin | Not assoc w R |
tlyA | 1917975 | c.36C>G | synonymous_variant | 0.17 | capreomycin | |
tlyA | 1917981 | c.42G>C | synonymous_variant | 0.17 | capreomycin | |
tlyA | 1917987 | c.48G>C | synonymous_variant | 0.18 | capreomycin | |
tlyA | 1917996 | c.57A>C | synonymous_variant | 0.2 | capreomycin | |
tlyA | 1918002 | p.Gln21His | missense_variant | 0.16 | capreomycin | |
tlyA | 1918008 | c.69C>T | synonymous_variant | 0.15 | capreomycin | |
bacA | 2063523 | c.1206T>C | synonymous_variant | 0.18 | kanamycin | |
capreomycin | ||||||
streptomycin | ||||||
amikacin | ||||||
bacA | 2063529 | c.1200A>G | synonymous_variant | 0.18 | kanamycin | |
capreomycin | ||||||
streptomycin | ||||||
amikacin | ||||||
bacA | 2063538 | c.1191A>G | synonymous_variant | 0.19 | kanamycin | |
capreomycin | ||||||
streptomycin | ||||||
amikacin | ||||||
bacA | 2063541 | c.1188A>G | synonymous_variant | 0.19 | kanamycin | |
capreomycin | ||||||
streptomycin | ||||||
amikacin | ||||||
bacA | 2063550 | c.1179C>G | synonymous_variant | 0.2 | kanamycin | |
capreomycin | ||||||
streptomycin | ||||||
amikacin | ||||||
bacA | 2063658 | c.1071A>G | synonymous_variant | 0.16 | kanamycin | |
capreomycin | ||||||
streptomycin | ||||||
amikacin | ||||||
bacA | 2063667 | c.1062G>A | synonymous_variant | 0.2 | kanamycin | Not assoc w R - Interim |
capreomycin | Not assoc w R - Interim | |||||
streptomycin | ||||||
amikacin | ||||||
bacA | 2063676 | c.1053C>G | synonymous_variant | 0.21 | kanamycin | |
capreomycin | ||||||
streptomycin | ||||||
amikacin | ||||||
bacA | 2063697 | c.1032A>G | synonymous_variant | 0.2 | kanamycin | |
capreomycin | ||||||
streptomycin | ||||||
amikacin | ||||||
bacA | 2063703 | c.1026C>T | synonymous_variant | 0.21 | kanamycin | |
capreomycin | ||||||
streptomycin | ||||||
amikacin | ||||||
bacA | 2063715 | c.1014T>C | synonymous_variant | 0.19 | kanamycin | |
capreomycin | ||||||
streptomycin | ||||||
amikacin | ||||||
bacA | 2063724 | c.1005T>C | synonymous_variant | 0.19 | kanamycin | |
capreomycin | ||||||
streptomycin | ||||||
amikacin | ||||||
bacA | 2063730 | c.999A>T | synonymous_variant | 0.19 | kanamycin | |
capreomycin | ||||||
streptomycin | ||||||
amikacin | ||||||
bacA | 2063742 | c.987G>C | synonymous_variant | 0.18 | kanamycin | |
capreomycin | ||||||
streptomycin | ||||||
amikacin | ||||||
ndh | 2101939 | c.1104A>C | synonymous_variant | 0.19 | isoniazid | |
delamanid | ||||||
ethionamide | ||||||
ndh | 2101980 | p.Asn355Asp | missense_variant | 0.23 | isoniazid | |
delamanid | ||||||
ethionamide | ||||||
ndh | 2101987 | c.1056C>G | synonymous_variant | 0.19 | isoniazid | |
delamanid | ||||||
ethionamide | ||||||
ndh | 2101990 | c.1053G>C | synonymous_variant | 0.25 | isoniazid | |
delamanid | ||||||
ethionamide | ||||||
ndh | 2101999 | c.1044G>A | synonymous_variant | 0.26 | isoniazid | Not assoc w R - Interim |
delamanid | Not assoc w R - Interim | |||||
ethionamide | Not assoc w R - Interim | |||||
ndh | 2102020 | c.1023A>G | synonymous_variant | 0.23 | isoniazid | |
delamanid | ||||||
ethionamide | ||||||
ndh | 2102023 | c.1020G>C | synonymous_variant | 0.2 | isoniazid | Not assoc w R - Interim |
delamanid | ||||||
ethionamide | ||||||
ndh | 2102026 | c.1017G>T | synonymous_variant | 0.18 | isoniazid | |
delamanid | ||||||
ethionamide | ||||||
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 | isoniazid | Not assoc w R |
katG | 2155649 | p.Tyr155His | missense_variant | 0.15 | isoniazid | |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 | pyrazinamide | Not assoc w R |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 | bedaquiline | Not assoc w R - Interim |
clofazimine | Not assoc w R | |||||
kasA | 2517941 | c.-174C>G | upstream_gene_variant | 0.16 | isoniazid | |
kasA | 2518283 | p.Ala57Pro | missense_variant | 0.18 | isoniazid | |
kasA | 2518297 | c.183C>T | synonymous_variant | 0.17 | isoniazid | |
kasA | 2518312 | c.198T>C | synonymous_variant | 0.15 | isoniazid | |
kasA | 2518519 | c.405G>C | synonymous_variant | 0.19 | isoniazid | |
kasA | 2518534 | c.420G>C | synonymous_variant | 0.18 | isoniazid | |
kasA | 2518561 | c.447T>C | synonymous_variant | 0.21 | isoniazid | |
kasA | 2518567 | c.453G>T | synonymous_variant | 0.18 | isoniazid | |
kasA | 2518574 | p.Ile154Val | missense_variant | 0.16 | isoniazid | |
kasA | 2518588 | c.474T>C | synonymous_variant | 0.18 | isoniazid | |
kasA | 2518591 | c.477G>C | synonymous_variant | 0.17 | isoniazid | |
kasA | 2518642 | c.528A>G | synonymous_variant | 0.23 | isoniazid | |
kasA | 2518645 | c.531G>C | synonymous_variant | 0.17 | isoniazid | |
kasA | 2518648 | c.534C>T | synonymous_variant | 0.15 | isoniazid | |
kasA | 2518672 | c.558G>C | synonymous_variant | 0.32 | isoniazid | |
kasA | 2518681 | c.567C>T | synonymous_variant | 0.19 | isoniazid | |
kasA | 2518684 | c.570C>A | synonymous_variant | 0.22 | isoniazid | |
kasA | 2518711 | c.597A>G | synonymous_variant | 0.36 | isoniazid | |
kasA | 2518717 | c.603C>G | synonymous_variant | 0.21 | isoniazid | |
kasA | 2518735 | c.621C>A | synonymous_variant | 0.16 | isoniazid | |
kasA | 2518747 | c.633C>G | synonymous_variant | 0.32 | isoniazid | |
kasA | 2518756 | c.642G>C | synonymous_variant | 0.18 | isoniazid | |
kasA | 2518783 | c.669T>C | synonymous_variant | 0.31 | isoniazid | |
kasA | 2518789 | c.675G>T | synonymous_variant | 0.2 | isoniazid | |
kasA | 2518795 | c.681C>G | synonymous_variant | 0.26 | isoniazid | |
kasA | 2518798 | c.684G>C | synonymous_variant | 0.19 | isoniazid | |
kasA | 2518816 | c.702C>T | synonymous_variant | 0.2 | isoniazid | |
kasA | 2518822 | c.708C>T | synonymous_variant | 0.16 | isoniazid | |
kasA | 2518825 | c.711T>C | synonymous_variant | 0.22 | isoniazid | |
kasA | 2518855 | c.741C>G | synonymous_variant | 0.16 | isoniazid | |
kasA | 2518864 | c.750G>C | synonymous_variant | 0.23 | isoniazid | |
kasA | 2518885 | c.771T>C | synonymous_variant | 0.27 | isoniazid | |
kasA | 2518894 | c.780G>A | synonymous_variant | 0.18 | isoniazid | |
kasA | 2518903 | c.789C>T | synonymous_variant | 0.18 | isoniazid | |
kasA | 2518906 | c.792A>G | synonymous_variant | 0.29 | isoniazid | |
kasA | 2518910 | c.796C>T | synonymous_variant | 0.22 | isoniazid | |
kasA | 2518939 | c.825T>C | synonymous_variant | 0.21 | isoniazid | |
kasA | 2518942 | c.828T>C | synonymous_variant | 0.21 | isoniazid | |
ahpC | 2726348 | c.156T>C | synonymous_variant | 0.21 | isoniazid | |
ahpC | 2726354 | c.162G>C | synonymous_variant | 0.2 | isoniazid | |
ahpC | 2726357 | c.165A>G | synonymous_variant | 0.2 | isoniazid | Not assoc w R - Interim |
ahpC | 2726366 | c.174G>C | synonymous_variant | 0.24 | isoniazid | |
ahpC | 2726378 | c.186T>G | synonymous_variant | 0.19 | isoniazid | |
ahpC | 2726393 | c.201G>C | synonymous_variant | 0.21 | isoniazid | |
ahpC | 2726397 | p.Ser69Gly | missense_variant | 0.19 | isoniazid | |
ahpC | 2726408 | c.216T>C | synonymous_variant | 0.19 | isoniazid | |
ahpC | 2726430 | p.Ala80Thr | missense_variant | 0.17 | isoniazid | |
folC | 2746657 | c.942T>C | synonymous_variant | 0.18 | para-aminosalicylic_acid | |
folC | 2746663 | c.936T>C | synonymous_variant | 0.18 | para-aminosalicylic_acid | |
Rv2477c | 2783194 | c.849A>G | synonymous_variant | 0.18 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783254 | c.789A>G | synonymous_variant | 0.17 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783289 | p.Leu252Ile | missense_variant | 0.18 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783329 | c.714G>A | synonymous_variant | 0.22 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783332 | c.711T>C | synonymous_variant | 0.22 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783359 | c.684G>A | synonymous_variant | 0.26 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783374 | c.669G>C | synonymous_variant | 0.22 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783395 | c.648T>C | synonymous_variant | 0.27 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783410 | c.633G>C | synonymous_variant | 0.26 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783422 | c.621T>C | synonymous_variant | 0.24 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783425 | p.Pro206Ala | missense_variant | 0.18 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | Uncertain significance | |||||
ethambutol | Uncertain significance | |||||
amikacin | ||||||
Rv2477c | 2783428 | c.615C>T | synonymous_variant | 0.26 | kanamycin | Not assoc w R - Interim |
levofloxacin | Not assoc w R - Interim | |||||
moxifloxacin | Not assoc w R - Interim | |||||
streptomycin | ||||||
rifampicin | Not assoc w R - Interim | |||||
ethambutol | ||||||
amikacin | Not assoc w R - Interim | |||||
Rv2477c | 2783449 | c.594C>G | synonymous_variant | 0.19 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783461 | c.582T>C | synonymous_variant | 0.2 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783467 | c.576G>C | synonymous_variant | 0.18 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783473 | c.570A>G | synonymous_variant | 0.2 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783512 | c.531A>G | synonymous_variant | 0.18 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783520 | c.523T>C | synonymous_variant | 0.19 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | Not assoc w R - Interim | |||||
ethambutol | Not assoc w R - Interim | |||||
amikacin | ||||||
Rv2477c | 2783620 | c.423C>G | synonymous_variant | 0.16 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783674 | c.369T>C | synonymous_variant | 0.19 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783683 | c.360A>G | synonymous_variant | 0.23 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783700 | p.Thr115Ser | missense_variant | 0.26 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783751 | p.Ile98Val | missense_variant | 0.25 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783779 | c.264T>C | synonymous_variant | 0.18 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783815 | c.228A>G | synonymous_variant | 0.18 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783857 | c.186C>G | synonymous_variant | 0.2 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783860 | c.183T>C | synonymous_variant | 0.24 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783883 | c.160T>C | synonymous_variant | 0.27 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783884 | c.159T>A | synonymous_variant | 0.22 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783920 | c.123G>C | synonymous_variant | 0.23 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783935 | c.108C>G | synonymous_variant | 0.16 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783950 | c.93C>T | synonymous_variant | 0.17 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783953 | c.90G>C | synonymous_variant | 0.19 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783956 | p.Tyr29Phe | missense_variant | 0.35 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783967 | c.76T>C | synonymous_variant | 0.18 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783971 | c.72G>C | synonymous_variant | 0.4 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783980 | c.63C>G | synonymous_variant | 0.16 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783992 | c.51T>C | synonymous_variant | 0.3 | kanamycin | Not assoc w R - Interim |
levofloxacin | Not assoc w R - Interim | |||||
moxifloxacin | ||||||
streptomycin | Not assoc w R - Interim | |||||
rifampicin | Not assoc w R - Interim | |||||
ethambutol | Not assoc w R - Interim | |||||
amikacin | ||||||
Rv2477c | 2784016 | c.27G>A | synonymous_variant | 0.21 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2784477 | c.-435T>C | upstream_gene_variant | 0.17 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2784519 | c.-477G>A | upstream_gene_variant | 0.17 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2784525 | c.-483G>A | upstream_gene_variant | 0.17 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
pepQ | 2859468 | c.951G>T | synonymous_variant | 0.25 | bedaquiline | |
clofazimine | ||||||
pepQ | 2859489 | p.Val310Ala | missense_variant | 0.25 | bedaquiline | |
clofazimine | ||||||
pepQ | 2859510 | c.909T>C | synonymous_variant | 0.23 | bedaquiline | |
clofazimine | ||||||
pepQ | 2859528 | c.891T>C | synonymous_variant | 0.21 | bedaquiline | |
clofazimine | ||||||
pepQ | 2859540 | c.879A>T | synonymous_variant | 0.18 | bedaquiline | |
clofazimine | ||||||
Rv2752c | 3064596 | c.1596G>C | synonymous_variant | 0.18 | levofloxacin | |
moxifloxacin | ||||||
isoniazid | ||||||
rifampicin | ||||||
ethambutol | ||||||
Rv2752c | 3064602 | c.1590T>G | synonymous_variant | 0.17 | levofloxacin | |
moxifloxacin | ||||||
isoniazid | ||||||
rifampicin | ||||||
ethambutol | ||||||
Rv2752c | 3065556 | c.636G>A | synonymous_variant | 0.19 | levofloxacin | |
moxifloxacin | ||||||
isoniazid | ||||||
rifampicin | ||||||
ethambutol | ||||||
Rv2752c | 3065580 | c.612G>C | synonymous_variant | 0.22 | levofloxacin | |
moxifloxacin | ||||||
isoniazid | ||||||
rifampicin | ||||||
ethambutol | ||||||
Rv2752c | 3065583 | c.609G>C | synonymous_variant | 0.18 | levofloxacin | |
moxifloxacin | ||||||
isoniazid | ||||||
rifampicin | ||||||
ethambutol | ||||||
Rv2752c | 3065595 | p.Leu199Phe | missense_variant | 0.2 | levofloxacin | |
moxifloxacin | ||||||
isoniazid | ||||||
rifampicin | ||||||
ethambutol | ||||||
Rv2752c | 3065612 | p.Thr194Ala | missense_variant | 0.16 | levofloxacin | |
moxifloxacin | ||||||
isoniazid | ||||||
rifampicin | ||||||
ethambutol | ||||||
Rv2752c | 3065634 | c.558G>C | synonymous_variant | 0.16 | levofloxacin | |
moxifloxacin | ||||||
isoniazid | ||||||
rifampicin | ||||||
ethambutol | ||||||
Rv2752c | 3065640 | c.552T>C | synonymous_variant | 0.17 | levofloxacin | |
moxifloxacin | ||||||
isoniazid | ||||||
rifampicin | ||||||
ethambutol | ||||||
Rv2752c | 3065947 | p.Gly82Ala | missense_variant | 0.18 | levofloxacin | |
moxifloxacin | ||||||
isoniazid | ||||||
rifampicin | ||||||
ethambutol | ||||||
Rv2752c | 3066549 | c.-358T>C | upstream_gene_variant | 0.21 | levofloxacin | |
moxifloxacin | ||||||
isoniazid | ||||||
rifampicin | ||||||
ethambutol | ||||||
Rv2752c | 3066573 | c.-382G>C | upstream_gene_variant | 0.21 | levofloxacin | |
moxifloxacin | ||||||
isoniazid | ||||||
rifampicin | ||||||
ethambutol | ||||||
Rv2752c | 3066579 | c.-388A>G | upstream_gene_variant | 0.21 | levofloxacin | |
moxifloxacin | ||||||
isoniazid | ||||||
rifampicin | ||||||
ethambutol | ||||||
thyX | 3067280 | c.666G>C | synonymous_variant | 0.17 | para-aminosalicylic_acid | |
thyX | 3067284 | p.Ala221Asp | missense_variant | 0.17 | para-aminosalicylic_acid | |
thyX | 3067295 | c.651C>T | synonymous_variant | 0.17 | para-aminosalicylic_acid | |
thyX | 3067316 | c.630A>G | synonymous_variant | 0.27 | para-aminosalicylic_acid | |
thyX | 3067325 | c.621A>G | synonymous_variant | 0.28 | para-aminosalicylic_acid | |
thyX | 3067373 | c.573C>G | synonymous_variant | 0.22 | para-aminosalicylic_acid | |
thyX | 3067850 | c.96A>G | synonymous_variant | 0.15 | para-aminosalicylic_acid | |
thyX | 3067874 | c.72C>G | synonymous_variant | 0.27 | para-aminosalicylic_acid | |
thyX | 3067886 | c.60A>G | synonymous_variant | 0.23 | para-aminosalicylic_acid | |
thyX | 3067889 | c.57C>G | synonymous_variant | 0.23 | para-aminosalicylic_acid | |
thyX | 3067898 | p.Asp16Glu | missense_variant | 0.21 | para-aminosalicylic_acid | |
thyA | 3073932 | c.540C>T | synonymous_variant | 0.24 | para-aminosalicylic_acid | |
thyA | 3073977 | c.495A>G | synonymous_variant | 0.22 | para-aminosalicylic_acid | |
thyA | 3073989 | c.483T>C | synonymous_variant | 0.25 | para-aminosalicylic_acid | |
thyA | 3074004 | c.468T>C | synonymous_variant | 0.16 | para-aminosalicylic_acid | |
thyA | 3074031 | c.441T>C | synonymous_variant | 0.19 | para-aminosalicylic_acid | |
thyA | 3074037 | c.435C>G | synonymous_variant | 0.18 | para-aminosalicylic_acid | |
thyA | 3074053 | p.Arg140Gln | missense_variant | 0.18 | para-aminosalicylic_acid | |
thyA | 3074056 | p.Glu139Pro | missense_variant | 0.18 | para-aminosalicylic_acid | |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 | cycloserine | |
Rv3236c | 3612813 | p.Thr102Ala | missense_variant | 0.99 | pyrazinamide | Not assoc w R - Interim |
lpqB | 3623468 | c.1443T>G | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
lpqB | 3623471 | c.1440C>T | synonymous_variant | 0.16 | rifampicin | |
bedaquiline | ||||||
lpqB | 3623489 | c.1422C>T | synonymous_variant | 0.2 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
lpqB | 3623492 | c.1419T>C | synonymous_variant | 0.2 | rifampicin | |
bedaquiline | ||||||
lpqB | 3623510 | c.1401C>T | synonymous_variant | 0.21 | rifampicin | |
bedaquiline | ||||||
lpqB | 3624041 | p.Glu290Asp | missense_variant | 0.16 | rifampicin | |
bedaquiline | ||||||
lpqB | 3624071 | c.840C>T | synonymous_variant | 0.21 | rifampicin | |
bedaquiline | ||||||
lpqB | 3624080 | c.831G>A | synonymous_variant | 0.21 | rifampicin | Not assoc w R - Interim |
bedaquiline | Not assoc w R - Interim | |||||
lpqB | 3624094 | c.817A>C | synonymous_variant | 0.16 | rifampicin | |
bedaquiline | ||||||
lpqB | 3624098 | c.813G>A | synonymous_variant | 0.16 | rifampicin | |
bedaquiline | ||||||
lpqB | 3624101 | c.810C>A | synonymous_variant | 0.17 | rifampicin | |
bedaquiline | ||||||
lpqB | 3624107 | c.804C>T | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
lpqB | 3624356 | c.555C>T | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
lpqB | 3624389 | c.522C>G | synonymous_variant | 0.16 | rifampicin | |
bedaquiline | ||||||
lpqB | 3624406 | c.505C>T | synonymous_variant | 0.18 | rifampicin | |
bedaquiline | ||||||
lpqB | 3624422 | c.489G>C | synonymous_variant | 0.19 | rifampicin | |
bedaquiline | ||||||
lpqB | 3624425 | p.Glu162Ala | missense_variant | 0.18 | rifampicin | |
bedaquiline | ||||||
lpqB | 3624428 | c.483A>G | synonymous_variant | 0.19 | rifampicin | |
bedaquiline | ||||||
mtrB | 3625065 | p.Met517Leu | missense_variant | 1.0 | rifampicin | Not assoc w R |
bedaquiline | Uncertain significance | |||||
lpqB | 3625161 | c.-251T>C | upstream_gene_variant | 0.16 | rifampicin | |
bedaquiline | ||||||
lpqB | 3625186 | c.-276T>G | upstream_gene_variant | 0.17 | rifampicin | |
bedaquiline | ||||||
lpqB | 3625195 | c.-285A>G | upstream_gene_variant | 0.17 | rifampicin | |
bedaquiline | ||||||
mtrB | 3625222 | c.1392T>C | synonymous_variant | 0.23 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
lpqB | 3625243 | c.-333T>C | upstream_gene_variant | 0.23 | rifampicin | |
bedaquiline | ||||||
lpqB | 3625255 | c.-345T>G | upstream_gene_variant | 0.19 | rifampicin | |
bedaquiline | ||||||
lpqB | 3625648 | c.-738T>C | upstream_gene_variant | 0.17 | rifampicin | |
bedaquiline | ||||||
lpqB | 3625663 | c.-753G>C | upstream_gene_variant | 0.18 | rifampicin | |
bedaquiline | ||||||
lpqB | 3625684 | c.-774G>A | upstream_gene_variant | 0.17 | rifampicin | |
bedaquiline | ||||||
lpqB | 3625690 | c.-780T>C | upstream_gene_variant | 0.18 | rifampicin | |
bedaquiline | ||||||
mtrB | 3625729 | c.885A>G | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
lpqB | 3625747 | c.-837G>T | upstream_gene_variant | 0.17 | rifampicin | |
bedaquiline | ||||||
mtrB | 3625755 | p.Ala287Thr | missense_variant | 0.2 | rifampicin | Uncertain significance |
bedaquiline | ||||||
lpqB | 3625804 | c.-896_-894delAGGinsCGA | upstream_gene_variant | 0.16 | rifampicin | |
bedaquiline | ||||||
mtrB | 3626562 | p.Pro18Ser | missense_variant | 0.98 | rifampicin | Not assoc w R |
bedaquiline | Uncertain significance | |||||
mtrB | 3626684 | c.-71G>T | upstream_gene_variant | 0.19 | rifampicin | |
bedaquiline | ||||||
mtrB | 3626702 | c.-91_-89delCTGinsTTA | upstream_gene_variant | 0.18 | rifampicin | |
bedaquiline | ||||||
mtrB | 3626776 | c.-163A>C | upstream_gene_variant | 0.15 | rifampicin | |
bedaquiline | ||||||
mtrA | 3626786 | c.564A>G | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrA | 3626804 | c.546A>G | synonymous_variant | 0.26 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrA | 3626846 | c.504G>A | synonymous_variant | 0.3 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrB | 3626852 | c.-239G>A | upstream_gene_variant | 0.32 | rifampicin | |
bedaquiline | ||||||
mtrB | 3626857 | c.-244T>C | upstream_gene_variant | 0.31 | rifampicin | |
bedaquiline | ||||||
mtrB | 3626858 | c.-245A>G | upstream_gene_variant | 0.17 | rifampicin | |
bedaquiline | ||||||
mtrB | 3626866 | c.-253T>C | upstream_gene_variant | 0.3 | rifampicin | |
bedaquiline | ||||||
mtrB | 3626876 | c.-263A>G | upstream_gene_variant | 0.17 | rifampicin | |
bedaquiline | ||||||
mtrB | 3626885 | c.-272A>C | upstream_gene_variant | 0.18 | rifampicin | |
bedaquiline | ||||||
mtrB | 3626890 | c.-277T>C | upstream_gene_variant | 0.29 | rifampicin | |
bedaquiline | ||||||
mtrA | 3626912 | c.438T>C | synonymous_variant | 0.27 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrB | 3626942 | c.-329A>C | upstream_gene_variant | 0.18 | rifampicin | |
bedaquiline | ||||||
mtrB | 3626954 | c.-341C>G | upstream_gene_variant | 0.19 | rifampicin | |
bedaquiline | ||||||
mtrB | 3626972 | c.-359A>G | upstream_gene_variant | 0.24 | rifampicin | |
bedaquiline | ||||||
mtrB | 3626981 | c.-368C>T | upstream_gene_variant | 0.18 | rifampicin | |
bedaquiline | ||||||
mtrB | 3626990 | c.-377G>A | upstream_gene_variant | 0.17 | rifampicin | |
bedaquiline | ||||||
mtrB | 3627002 | c.-389G>A | upstream_gene_variant | 0.17 | rifampicin | |
bedaquiline | ||||||
mtrB | 3627008 | c.-395G>C | upstream_gene_variant | 0.16 | rifampicin | |
bedaquiline | ||||||
mtrB | 3627011 | c.-398T>C | upstream_gene_variant | 0.23 | rifampicin | |
bedaquiline | ||||||
mtrB | 3627071 | c.-458G>C | upstream_gene_variant | 0.29 | rifampicin | |
bedaquiline | ||||||
mtrB | 3627083 | c.-470G>C | upstream_gene_variant | 0.16 | rifampicin | |
bedaquiline | ||||||
mtrA | 3627098 | c.252A>C | synonymous_variant | 0.27 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrB | 3627104 | c.-491C>G | upstream_gene_variant | 0.24 | rifampicin | |
bedaquiline | ||||||
mtrB | 3627140 | c.-527G>C | upstream_gene_variant | 0.18 | rifampicin | |
bedaquiline | ||||||
mtrB | 3627155 | c.-542C>T | upstream_gene_variant | 0.2 | rifampicin | |
bedaquiline | ||||||
mtrB | 3627167 | c.-554T>C | upstream_gene_variant | 0.21 | rifampicin | |
bedaquiline | ||||||
mtrB | 3627182 | c.-569T>C | upstream_gene_variant | 0.31 | rifampicin | |
bedaquiline | ||||||
mtrA | 3627187 | c.163T>C | synonymous_variant | 0.29 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrA | 3627190 | c.160T>C | synonymous_variant | 0.29 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrB | 3627203 | c.-590C>G | upstream_gene_variant | 0.32 | rifampicin | |
bedaquiline | ||||||
mtrA | 3627227 | c.123T>C | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrA | 3627242 | c.108C>T | synonymous_variant | 0.25 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrB | 3627266 | c.-653A>G | upstream_gene_variant | 0.22 | rifampicin | |
bedaquiline | ||||||
mtrB | 3627272 | c.-659G>T | upstream_gene_variant | 0.22 | rifampicin | |
bedaquiline | ||||||
mtrB | 3627287 | c.-674C>G | upstream_gene_variant | 0.22 | rifampicin | |
bedaquiline | ||||||
mtrB | 3627296 | c.-683T>A | upstream_gene_variant | 0.15 | rifampicin | |
bedaquiline | ||||||
mtrB | 3627301 | c.-688T>C | upstream_gene_variant | 0.19 | rifampicin | |
bedaquiline | ||||||
rpoA | 3877557 | c.951C>G | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoA | 3877587 | c.921A>G | synonymous_variant | 0.28 | rifampicin | Not assoc w R - Interim |
rpoA | 3877613 | p.Ile299Val | missense_variant | 0.26 | rifampicin | |
rpoA | 3877668 | c.840A>G | synonymous_variant | 0.21 | rifampicin | |
rpoA | 3877680 | c.828G>C | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoA | 3877692 | c.816G>C | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoA | 3877704 | c.804G>C | synonymous_variant | 0.15 | rifampicin | |
rpoA | 3877737 | c.771G>C | synonymous_variant | 0.21 | rifampicin | |
rpoA | 3877755 | c.753C>A | synonymous_variant | 0.17 | rifampicin | |
rpoA | 3877764 | c.744C>G | synonymous_variant | 0.34 | rifampicin | Not assoc w R - Interim |
rpoA | 3877770 | c.738A>G | synonymous_variant | 0.35 | rifampicin | Not assoc w R - Interim |
rpoA | 3877776 | c.732T>C | synonymous_variant | 0.36 | rifampicin | Not assoc w R - Interim |
rpoA | 3877782 | c.726T>C | synonymous_variant | 0.36 | rifampicin | Not assoc w R - Interim |
rpoA | 3877830 | c.678C>T | synonymous_variant | 0.21 | rifampicin | |
rpoA | 3877836 | c.672A>G | synonymous_variant | 0.2 | rifampicin | Not assoc w R - Interim |
rpoA | 3877839 | c.669G>C | synonymous_variant | 0.29 | rifampicin | Not assoc w R - Interim |
rpoA | 3877848 | c.660C>T | synonymous_variant | 0.21 | rifampicin | Not assoc w R - Interim |
rpoA | 3877875 | c.633T>G | synonymous_variant | 0.25 | rifampicin | |
rpoA | 3877896 | c.612G>C | synonymous_variant | 0.26 | rifampicin | |
rpoA | 3877900 | p.Ser203Thr | missense_variant | 0.26 | rifampicin | |
rpoA | 3877905 | c.603A>G | synonymous_variant | 0.31 | rifampicin | Not assoc w R - Interim |
rpoA | 3877909 | p.Asn200Ser | missense_variant | 0.35 | rifampicin | |
rpoA | 3877920 | c.588G>C | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoA | 3877929 | c.579C>T | synonymous_variant | 0.15 | rifampicin | |
rpoA | 3877986 | c.522G>C | synonymous_variant | 0.35 | rifampicin | |
rpoA | 3877989 | c.519A>G | synonymous_variant | 0.35 | rifampicin | Not assoc w R - Interim |
rpoA | 3877995 | c.513G>A | synonymous_variant | 0.22 | rifampicin | |
rpoA | 3878001 | c.507A>G | synonymous_variant | 0.32 | rifampicin | Not assoc w R - Interim |
rpoA | 3878022 | c.486T>C | synonymous_variant | 0.25 | rifampicin | |
rpoA | 3878025 | c.483C>T | synonymous_variant | 0.24 | rifampicin | |
rpoA | 3878028 | c.480G>C | synonymous_variant | 0.25 | rifampicin | |
rpoA | 3878031 | c.477T>C | synonymous_variant | 0.25 | rifampicin | |
rpoA | 3878043 | c.465G>C | synonymous_variant | 0.21 | rifampicin | |
rpoA | 3878049 | c.459G>C | synonymous_variant | 0.17 | rifampicin | |
rpoA | 3878061 | c.447G>C | synonymous_variant | 0.23 | rifampicin | |
rpoA | 3878106 | c.402G>C | synonymous_variant | 0.25 | rifampicin | |
rpoA | 3878118 | c.390T>C | synonymous_variant | 0.25 | rifampicin | |
rpoA | 3878157 | c.351C>G | synonymous_variant | 0.27 | rifampicin | |
rpoA | 3878163 | c.345C>T | synonymous_variant | 0.26 | rifampicin | Not assoc w R - Interim |
rpoA | 3878172 | c.336G>C | synonymous_variant | 0.17 | rifampicin | |
rpoA | 3878193 | c.315T>C | synonymous_variant | 0.25 | rifampicin | Not assoc w R - Interim |
rpoA | 3878202 | c.306G>C | synonymous_variant | 0.21 | rifampicin | |
rpoA | 3878211 | c.297G>A | synonymous_variant | 0.21 | rifampicin | |
rpoA | 3878217 | c.291A>G | synonymous_variant | 0.31 | rifampicin | Not assoc w R - Interim |
rpoA | 3878283 | p.Glu75Asp | missense_variant | 0.17 | rifampicin | Uncertain significance |
rpoA | 3878295 | c.213A>G | synonymous_variant | 0.2 | rifampicin | |
rpoA | 3878298 | c.210A>G | synonymous_variant | 0.22 | rifampicin | Not assoc w R - Interim |
rpoA | 3878331 | c.177A>G | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoA | 3878334 | c.174T>C | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoA | 3878337 | c.171T>C | synonymous_variant | 0.2 | rifampicin | Not assoc w R - Interim |
rpoA | 3878406 | c.102G>T | synonymous_variant | 0.21 | rifampicin | |
rpoA | 3878415 | c.93C>T | synonymous_variant | 0.16 | rifampicin | |
rpoA | 3878421 | c.87A>T | synonymous_variant | 0.19 | rifampicin | |
rpoA | 3878442 | c.66G>C | synonymous_variant | 0.27 | rifampicin | |
rpoA | 3878454 | c.54A>G | synonymous_variant | 0.25 | rifampicin | |
rpoA | 3878472 | p.Asp12Glu | missense_variant | 0.26 | rifampicin | |
rpoA | 3878496 | c.12A>T | synonymous_variant | 0.22 | rifampicin | |
rpoA | 3878764 | c.-257A>G | upstream_gene_variant | 0.17 | rifampicin | |
rpoA | 3878853 | c.-346G>A | upstream_gene_variant | 0.19 | rifampicin | |
rpoA | 3878878 | c.-371T>C | upstream_gene_variant | 0.25 | rifampicin | Uncertain significance |
rpoA | 3878909 | c.-402A>G | upstream_gene_variant | 0.28 | rifampicin | |
rpoA | 3878914 | c.-407T>C | upstream_gene_variant | 0.24 | rifampicin | Uncertain significance |
rpoA | 3878938 | c.-431T>C | upstream_gene_variant | 0.22 | rifampicin | |
rpoA | 3878947 | c.-440G>C | upstream_gene_variant | 0.21 | rifampicin | Uncertain significance |
rpoA | 3879022 | c.-515G>C | upstream_gene_variant | 0.17 | rifampicin | |
rpoA | 3879088 | c.-581A>C | upstream_gene_variant | 0.23 | rifampicin | |
rpoA | 3879094 | c.-587T>C | upstream_gene_variant | 0.25 | rifampicin | |
rpoA | 3879121 | c.-614T>G | upstream_gene_variant | 0.25 | rifampicin | |
rpoA | 3879148 | c.-641G>C | upstream_gene_variant | 0.16 | rifampicin | |
rpoA | 3879154 | c.-647T>C | upstream_gene_variant | 0.28 | rifampicin | |
rpoA | 3879160 | c.-653A>G | upstream_gene_variant | 0.3 | rifampicin | |
rpoA | 3879172 | c.-665C>T | upstream_gene_variant | 0.2 | rifampicin | |
rpoA | 3879184 | c.-677G>A | upstream_gene_variant | 0.17 | rifampicin | |
ddn | 3986648 | c.-196C>G | upstream_gene_variant | 0.15 | pretomanid | |
delamanid | ||||||
clpC1 | 4038278 | c.2427T>C | synonymous_variant | 0.22 | pyrazinamide | |
clpC1 | 4038314 | c.2391T>G | synonymous_variant | 0.19 | pyrazinamide | |
clpC1 | 4038335 | c.2370C>T | synonymous_variant | 0.18 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4038344 | c.2361G>A | synonymous_variant | 0.18 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4038350 | c.2355C>G | synonymous_variant | 0.3 | pyrazinamide | |
clpC1 | 4038356 | c.2349T>C | synonymous_variant | 0.29 | pyrazinamide | |
clpC1 | 4038359 | c.2346A>G | synonymous_variant | 0.3 | pyrazinamide | |
clpC1 | 4038368 | c.2337T>C | synonymous_variant | 0.3 | pyrazinamide | |
clpC1 | 4038407 | c.2298G>C | synonymous_variant | 0.18 | pyrazinamide | |
clpC1 | 4038419 | c.2286T>C | synonymous_variant | 0.17 | pyrazinamide | |
clpC1 | 4038436 | p.Ala757Ser | missense_variant | 0.17 | pyrazinamide | |
clpC1 | 4038445 | p.Ala754Thr | missense_variant | 0.16 | pyrazinamide | |
clpC1 | 4038446 | c.2259T>C | synonymous_variant | 0.16 | pyrazinamide | |
clpC1 | 4038456 | p.Val750Glu | missense_variant | 0.15 | pyrazinamide | |
clpC1 | 4038519 | p.Arg729Gln | missense_variant | 0.27 | pyrazinamide | |
clpC1 | 4038530 | p.Glu725Asp | missense_variant | 0.28 | pyrazinamide | |
clpC1 | 4038536 | c.2169C>T | synonymous_variant | 0.26 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4038596 | c.2109A>G | synonymous_variant | 0.22 | pyrazinamide | |
clpC1 | 4038790 | c.1915C>T | synonymous_variant | 0.28 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4038800 | c.1905C>T | synonymous_variant | 0.16 | pyrazinamide | |
clpC1 | 4038812 | c.1893T>C | synonymous_variant | 0.3 | pyrazinamide | |
clpC1 | 4038878 | c.1827A>G | synonymous_variant | 0.27 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4038908 | c.1797C>G | synonymous_variant | 0.2 | pyrazinamide | |
clpC1 | 4038914 | c.1791G>C | synonymous_variant | 0.19 | pyrazinamide | |
clpC1 | 4039085 | c.1620A>G | synonymous_variant | 0.18 | pyrazinamide | |
clpC1 | 4039097 | c.1608G>C | synonymous_variant | 0.2 | pyrazinamide | |
clpC1 | 4039103 | c.1602T>C | synonymous_variant | 0.22 | pyrazinamide | |
clpC1 | 4039106 | c.1599G>C | synonymous_variant | 0.21 | pyrazinamide | |
clpC1 | 4039112 | c.1593C>G | synonymous_variant | 0.21 | pyrazinamide | |
clpC1 | 4039121 | c.1584T>C | synonymous_variant | 0.25 | pyrazinamide | |
clpC1 | 4039133 | c.1572C>G | synonymous_variant | 0.26 | pyrazinamide | |
clpC1 | 4039142 | c.1563A>G | synonymous_variant | 0.24 | pyrazinamide | |
clpC1 | 4039145 | c.1560G>C | synonymous_variant | 0.25 | pyrazinamide | |
clpC1 | 4039169 | p.Glu512Asp | missense_variant | 0.19 | pyrazinamide | |
clpC1 | 4039172 | c.1533A>G | synonymous_variant | 0.29 | pyrazinamide | |
clpC1 | 4039183 | c.1522T>C | synonymous_variant | 0.31 | pyrazinamide | |
clpC1 | 4039187 | c.1518G>C | synonymous_variant | 0.18 | pyrazinamide | |
clpC1 | 4039226 | c.1479T>C | synonymous_variant | 0.24 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4039274 | c.1431G>C | synonymous_variant | 0.32 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4039286 | c.1419T>C | synonymous_variant | 0.37 | pyrazinamide | |
clpC1 | 4039292 | c.1413C>T | synonymous_variant | 0.37 | pyrazinamide | |
clpC1 | 4039295 | c.1410A>G | synonymous_variant | 0.25 | pyrazinamide | |
clpC1 | 4039319 | c.1386T>C | synonymous_variant | 0.38 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4039322 | c.1383T>C | synonymous_variant | 0.29 | pyrazinamide | |
clpC1 | 4039337 | c.1368A>C | synonymous_variant | 0.26 | pyrazinamide | |
clpC1 | 4039352 | c.1353C>T | synonymous_variant | 0.23 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4039391 | c.1314T>G | synonymous_variant | 0.24 | pyrazinamide | |
clpC1 | 4039409 | c.1296T>C | synonymous_variant | 0.23 | pyrazinamide | |
clpC1 | 4039412 | c.1293T>G | synonymous_variant | 0.22 | pyrazinamide | |
clpC1 | 4039481 | c.1224T>C | synonymous_variant | 0.33 | pyrazinamide | |
clpC1 | 4039484 | c.1221T>C | synonymous_variant | 0.23 | pyrazinamide | |
clpC1 | 4039517 | c.1188C>G | synonymous_variant | 0.22 | pyrazinamide | |
clpC1 | 4039622 | c.1083C>G | synonymous_variant | 0.17 | pyrazinamide | |
clpC1 | 4039661 | c.1044T>C | synonymous_variant | 0.32 | pyrazinamide | |
clpC1 | 4039673 | c.1032G>C | synonymous_variant | 0.2 | pyrazinamide | |
clpC1 | 4039694 | c.1011G>C | synonymous_variant | 0.3 | pyrazinamide | |
clpC1 | 4039715 | c.990G>A | synonymous_variant | 0.19 | pyrazinamide | |
clpC1 | 4039724 | c.981A>G | synonymous_variant | 0.27 | pyrazinamide | |
clpC1 | 4039727 | c.978C>T | synonymous_variant | 0.16 | pyrazinamide | |
clpC1 | 4039748 | c.957G>C | synonymous_variant | 0.21 | pyrazinamide | |
clpC1 | 4039751 | c.954A>G | synonymous_variant | 0.24 | pyrazinamide | |
clpC1 | 4039760 | c.945T>C | synonymous_variant | 0.19 | pyrazinamide | |
clpC1 | 4039766 | c.939T>C | synonymous_variant | 0.2 | pyrazinamide | |
clpC1 | 4039769 | c.936C>G | synonymous_variant | 0.2 | pyrazinamide | |
clpC1 | 4039778 | c.927A>G | synonymous_variant | 0.22 | pyrazinamide | |
clpC1 | 4039781 | c.924G>C | synonymous_variant | 0.21 | pyrazinamide | |
clpC1 | 4039790 | c.915C>G | synonymous_variant | 0.23 | pyrazinamide | |
clpC1 | 4039796 | c.909C>T | synonymous_variant | 0.24 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4039817 | c.888A>T | synonymous_variant | 0.25 | pyrazinamide | |
clpC1 | 4039820 | c.885T>C | synonymous_variant | 0.3 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4039826 | c.879C>G | synonymous_variant | 0.32 | pyrazinamide | |
clpC1 | 4039831 | c.874T>C | synonymous_variant | 0.34 | pyrazinamide | |
clpC1 | 4039850 | c.855T>C | synonymous_variant | 0.36 | pyrazinamide | |
clpC1 | 4039865 | c.840T>C | synonymous_variant | 0.36 | pyrazinamide | |
clpC1 | 4039898 | c.807C>G | synonymous_variant | 0.2 | pyrazinamide | |
clpC1 | 4039931 | c.774T>C | synonymous_variant | 0.25 | pyrazinamide | |
clpC1 | 4039946 | c.759A>G | synonymous_variant | 0.2 | pyrazinamide | |
clpC1 | 4039952 | c.753T>C | synonymous_variant | 0.29 | pyrazinamide | |
clpC1 | 4039958 | c.747G>C | synonymous_variant | 0.29 | pyrazinamide | |
clpC1 | 4039991 | c.714G>C | synonymous_variant | 0.25 | pyrazinamide | |
clpC1 | 4039996 | p.Glu237Gln | missense_variant | 0.27 | pyrazinamide | |
clpC1 | 4040015 | c.690G>C | synonymous_variant | 0.25 | pyrazinamide | |
clpC1 | 4040018 | c.687G>C | synonymous_variant | 0.23 | pyrazinamide | |
clpC1 | 4040021 | c.684A>C | synonymous_variant | 0.32 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4040033 | c.672G>C | synonymous_variant | 0.29 | pyrazinamide | |
clpC1 | 4040036 | c.669C>G | synonymous_variant | 0.17 | pyrazinamide | |
clpC1 | 4040342 | c.363C>G | synonymous_variant | 0.16 | pyrazinamide | |
clpC1 | 4040471 | c.234T>C | synonymous_variant | 0.15 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4040551 | c.154T>C | synonymous_variant | 0.2 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4040561 | c.144A>G | synonymous_variant | 0.19 | pyrazinamide | |
glpK | 4139231 | c.525A>C | synonymous_variant | 0.17 | levofloxacin | |
moxifloxacin | ||||||
isoniazid | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
embC | 4238909 | c.-954C>G | upstream_gene_variant | 0.15 | ethambutol | |
embC | 4238912 | c.-951C>T | upstream_gene_variant | 0.15 | ethambutol | |
embC | 4238943 | c.-920G>A | upstream_gene_variant | 0.17 | ethambutol | Uncertain significance |
embC | 4238954 | c.-909C>T | upstream_gene_variant | 0.2 | ethambutol | |
embC | 4238963 | c.-900C>T | upstream_gene_variant | 0.19 | ethambutol | Not assoc w R |
embC | 4238969 | c.-894A>G | upstream_gene_variant | 0.2 | ethambutol | |
embC | 4238972 | c.-891C>G | upstream_gene_variant | 0.21 | ethambutol | Uncertain significance |
embC | 4238975 | c.-888A>C | upstream_gene_variant | 0.21 | ethambutol | |
embC | 4238986 | c.-877C>A | upstream_gene_variant | 0.15 | ethambutol | |
embC | 4239032 | c.-831T>C | upstream_gene_variant | 0.15 | ethambutol | Uncertain significance |
embC | 4239089 | c.-774C>G | upstream_gene_variant | 0.18 | ethambutol | |
embC | 4239125 | c.-738C>G | upstream_gene_variant | 0.21 | ethambutol | |
embC | 4239141 | c.-722G>A | upstream_gene_variant | 0.18 | ethambutol | Uncertain significance |
embC | 4239147 | c.-716T>C | upstream_gene_variant | 0.17 | ethambutol | |
embC | 4239378 | c.-485T>C | upstream_gene_variant | 0.17 | ethambutol | |
embC | 4240475 | p.Ala205Ser | missense_variant | 0.15 | ethambutol | Uncertain significance |
embC | 4240486 | c.624G>A | synonymous_variant | 0.24 | ethambutol | |
embC | 4240489 | c.627A>G | synonymous_variant | 0.23 | ethambutol | |
embC | 4240495 | c.633T>C | synonymous_variant | 0.23 | ethambutol | |
embC | 4240512 | p.Ser217Thr | missense_variant | 0.2 | ethambutol | |
embC | 4240516 | c.654G>C | synonymous_variant | 0.2 | ethambutol | |
embC | 4240519 | c.657T>C | synonymous_variant | 0.2 | ethambutol | |
embC | 4240717 | c.855T>C | synonymous_variant | 0.21 | ethambutol | |
embC | 4240726 | c.864G>C | synonymous_variant | 0.21 | ethambutol | Not assoc w R - Interim |
embC | 4240741 | c.879C>T | synonymous_variant | 0.21 | ethambutol | |
embC | 4240783 | c.921G>C | synonymous_variant | 0.22 | ethambutol | |
embC | 4240795 | c.933C>G | synonymous_variant | 0.16 | ethambutol | |
embC | 4240859 | p.Leu333Met | missense_variant | 0.18 | ethambutol | |
embC | 4240867 | c.1005T>G | synonymous_variant | 0.18 | ethambutol | |
embC | 4240870 | c.1008T>C | synonymous_variant | 0.18 | ethambutol | |
embC | 4240879 | c.1017G>C | synonymous_variant | 0.17 | ethambutol | |
embC | 4241017 | c.1155T>C | synonymous_variant | 0.16 | ethambutol | |
embC | 4241023 | c.1161T>G | synonymous_variant | 0.16 | ethambutol | |
embC | 4241050 | c.1188T>G | synonymous_variant | 0.17 | ethambutol | |
embC | 4241095 | c.1233C>T | synonymous_variant | 0.22 | ethambutol | |
embC | 4241107 | c.1245G>C | synonymous_variant | 0.22 | ethambutol | |
embC | 4241140 | c.1278A>G | synonymous_variant | 0.25 | ethambutol | Not assoc w R - Interim |
embC | 4241153 | p.Ile431Leu | missense_variant | 0.22 | ethambutol | |
embC | 4241161 | c.1299C>G | synonymous_variant | 0.26 | ethambutol | Not assoc w R - Interim |
embC | 4241162 | c.1300T>C | synonymous_variant | 0.26 | ethambutol | |
embC | 4241167 | c.1305C>G | synonymous_variant | 0.2 | ethambutol | |
embC | 4241185 | c.1323G>C | synonymous_variant | 0.19 | ethambutol | |
embC | 4242139 | c.2277G>C | synonymous_variant | 0.15 | ethambutol | |
embC | 4242643 | c.2781C>T | synonymous_variant | 1.0 | ethambutol | Not assoc w R |
embC | 4242791 | p.Ala977Ser | missense_variant | 0.16 | ethambutol | |
embA | 4243460 | c.228C>T | synonymous_variant | 0.97 | ethambutol | Not assoc w R |
embA | 4244823 | p.Val531Met | missense_variant | 0.16 | ethambutol | |
embA | 4244856 | p.Ala542Pro | missense_variant | 0.2 | ethambutol | |
embA | 4244885 | c.1653A>G | synonymous_variant | 0.23 | ethambutol | |
embA | 4245101 | c.1869G>C | synonymous_variant | 0.21 | ethambutol | |
embA | 4245137 | c.1905T>C | synonymous_variant | 0.23 | ethambutol | |
embA | 4245149 | c.1917C>A | synonymous_variant | 0.19 | ethambutol | |
embA | 4245153 | p.Ile641Val | missense_variant | 0.17 | ethambutol | |
embA | 4245174 | p.Ser648Thr | missense_variant | 0.18 | ethambutol | |
embA | 4245182 | c.1950T>C | synonymous_variant | 0.24 | ethambutol | |
embA | 4245186 | p.Thr652Ala | missense_variant | 0.23 | ethambutol | |
embA | 4245200 | c.1968C>G | synonymous_variant | 0.17 | ethambutol | |
embA | 4245215 | c.1983A>C | synonymous_variant | 0.17 | ethambutol | |
embB | 4245620 | c.-894T>C | upstream_gene_variant | 0.22 | ethambutol | |
embB | 4245623 | c.-891G>A | upstream_gene_variant | 0.21 | ethambutol | |
embB | 4245662 | c.-852G>C | upstream_gene_variant | 0.23 | ethambutol | |
embA | 4245674 | c.2442A>T | synonymous_variant | 0.26 | ethambutol | Not assoc w R - Interim |
embB | 4245677 | c.-837G>C | upstream_gene_variant | 0.24 | ethambutol | |
embB | 4245683 | c.-831C>T | upstream_gene_variant | 0.26 | ethambutol | |
embA | 4245693 | p.Ile821Val | missense_variant | 0.25 | ethambutol | |
embB | 4245714 | c.-800C>T | upstream_gene_variant | 0.21 | ethambutol | |
embB | 4245725 | c.-789A>G | upstream_gene_variant | 0.16 | ethambutol | |
embB | 4245726 | c.-788T>C | upstream_gene_variant | 0.18 | ethambutol | |
embB | 4246346 | c.-168C>G | upstream_gene_variant | 0.21 | ethambutol | |
embA | 4246359 | p.Ala1043Ser | missense_variant | 0.19 | ethambutol | |
embB | 4246567 | c.54G>T | synonymous_variant | 1.0 | ethambutol | Not assoc w R - Interim |
embB | 4247446 | c.933C>T | synonymous_variant | 0.17 | ethambutol | |
embB | 4247470 | c.957T>C | synonymous_variant | 0.33 | ethambutol | |
embB | 4247494 | c.981G>A | synonymous_variant | 0.2 | ethambutol | |
embB | 4247497 | c.984T>C | synonymous_variant | 0.33 | ethambutol | |
embB | 4247500 | c.987C>G | synonymous_variant | 0.34 | ethambutol | |
embB | 4247512 | c.999T>C | synonymous_variant | 0.3 | ethambutol | |
embB | 4247554 | c.1041T>C | synonymous_variant | 0.25 | ethambutol | |
embB | 4247590 | c.1077A>G | synonymous_variant | 0.2 | ethambutol | Not assoc w R - Interim |
embB | 4247836 | c.1323A>G | synonymous_variant | 0.18 | ethambutol | Not assoc w R - Interim |
embB | 4247858 | c.1345C>T | synonymous_variant | 0.19 | ethambutol | |
embB | 4248007 | c.1494C>G | synonymous_variant | 0.24 | ethambutol | |
embB | 4248035 | p.Val508Ile | missense_variant | 0.15 | ethambutol | |
embB | 4248055 | c.1542G>C | synonymous_variant | 0.23 | ethambutol | |
embB | 4248064 | c.1551G>C | synonymous_variant | 0.23 | ethambutol | Not assoc w R - Interim |
embB | 4248070 | c.1557T>C | synonymous_variant | 0.26 | ethambutol | |
embB | 4248130 | c.1617G>C | synonymous_variant | 0.27 | ethambutol | |
embB | 4248142 | c.1629T>C | synonymous_variant | 0.26 | ethambutol | |
embB | 4248143 | c.1630T>C | synonymous_variant | 0.2 | ethambutol | |
embB | 4248154 | c.1641G>T | synonymous_variant | 0.22 | ethambutol | |
embB | 4248157 | c.1644A>T | synonymous_variant | 0.22 | ethambutol | |
embB | 4248163 | c.1650G>A | synonymous_variant | 0.2 | ethambutol | |
embB | 4248169 | c.1656C>T | synonymous_variant | 0.19 | ethambutol | Not assoc w R - Interim |
embB | 4248175 | c.1662G>A | synonymous_variant | 0.19 | ethambutol | |
embB | 4248178 | c.1665C>T | synonymous_variant | 0.19 | ethambutol | |
embB | 4248206 | p.Ser565Gly | missense_variant | 0.21 | ethambutol | Uncertain significance |
embB | 4248217 | c.1704C>G | synonymous_variant | 0.2 | ethambutol | |
embB | 4248220 | c.1707A>G | synonymous_variant | 0.21 | ethambutol | Not assoc w R - Interim |
embB | 4248233 | c.1720C>T | synonymous_variant | 0.2 | ethambutol | |
embB | 4248277 | c.1764G>C | synonymous_variant | 0.27 | ethambutol | |
embB | 4248280 | c.1767C>G | synonymous_variant | 0.28 | ethambutol | |
embB | 4248316 | c.1803C>G | synonymous_variant | 0.27 | ethambutol | |
embB | 4248319 | c.1806A>G | synonymous_variant | 0.27 | ethambutol | |
embB | 4248349 | c.1836G>A | synonymous_variant | 0.16 | ethambutol | |
embB | 4248358 | c.1845C>G | synonymous_variant | 0.16 | ethambutol | |
embB | 4248379 | c.1866G>A | synonymous_variant | 0.15 | ethambutol | |
embB | 4248706 | c.2193G>C | synonymous_variant | 0.17 | ethambutol | Not assoc w R - Interim |
embB | 4248731 | p.Val740Leu | missense_variant | 0.17 | ethambutol | |
embB | 4249568 | p.Ser1019Asn | missense_variant | 0.18 | ethambutol | |
embB | 4249573 | c.3060T>C | synonymous_variant | 0.17 | ethambutol | |
aftB | 4267556 | c.1281G>C | synonymous_variant | 0.17 | ethambutol | |
aftB | 4267574 | c.1263G>C | synonymous_variant | 0.19 | ethambutol | |
aftB | 4267580 | c.1257G>A | synonymous_variant | 0.19 | ethambutol | |
aftB | 4267592 | c.1245C>G | synonymous_variant | 0.2 | ethambutol | Not assoc w R - Interim |
aftB | 4267622 | p.Ser405Thr | missense_variant | 0.2 | ethambutol | |
aftB | 4267634 | p.Arg401His | missense_variant | 0.19 | ethambutol | |
aftB | 4267647 | p.Asp397Gly | missense_variant | 0.79 | ethambutol | Not assoc w R |
aftB | 4269000 | c.-164G>A | upstream_gene_variant | 0.19 | ethambutol | |
aftB | 4269006 | c.-170T>C | upstream_gene_variant | 0.2 | ethambutol | |
aftB | 4269012 | c.-176G>C | upstream_gene_variant | 0.2 | ethambutol | |
aftB | 4269033 | c.-197T>C | upstream_gene_variant | 0.18 | ethambutol | |
aftB | 4269195 | c.-359C>T | upstream_gene_variant | 0.17 | ethambutol | |
ubiA | 4269222 | c.612T>G | synonymous_variant | 0.25 | ethambutol | Not assoc w R - Interim |
ubiA | 4269225 | c.609C>T | synonymous_variant | 0.17 | ethambutol | Not assoc w R - Interim |
aftB | 4269231 | c.-395C>T | upstream_gene_variant | 0.16 | ethambutol | |
aftB | 4269234 | c.-398A>G | upstream_gene_variant | 0.26 | ethambutol | |
ubiA | 4269243 | p.His197Gln | missense_variant | 0.23 | ethambutol | |
aftB | 4269248 | c.-412C>T | upstream_gene_variant | 0.22 | ethambutol | |
aftB | 4269285 | c.-449T>G | upstream_gene_variant | 0.16 | ethambutol | |
ethA | 4326535 | c.939G>C | synonymous_variant | 0.16 | ethionamide | |
ethR | 4326556 | c.-993A>G | upstream_gene_variant | 0.15 | ethionamide | |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 | kanamycin | Not assoc w R |
capreomycin | Not assoc w R | |||||
amikacin | Not assoc w R | |||||
whiB6 | 4338732 | c.-211C>T | upstream_gene_variant | 1.0 | kanamycin | |
capreomycin | ||||||
amikacin | ||||||
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 | streptomycin | Not assoc w R |
gid | 4407927 | p.Glu92Asp | missense_variant | 1.0 | streptomycin | Not assoc w R |