TB-Profiler result

Run: SRR1183145
Summary

Run ID: SRR1183145

Sample name:

Date: 03-04-2023 05:07:11

Number of reads: 3103937

Percentage reads mapped: 68.01

Strain: lineage2.2.1

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage2 East-Asian Beijing RD105 0.97
lineage2.2 East-Asian (Beijing) Beijing-RD207 RD105;RD207 0.98
lineage2.2.1 East-Asian (Beijing) Beijing-RD181 RD105;RD207;RD181 0.98
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
embB 4247448 p.His312Arg missense_variant 0.3 ethambutol
embB 4247580 p.Ala356Val missense_variant 0.18 ethambutol
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5308 c.69G>A synonymous_variant 0.16
gyrB 5341 c.102T>C synonymous_variant 0.17
gyrB 5449 c.210T>C synonymous_variant 0.16
gyrB 5455 c.216T>C synonymous_variant 0.17
gyrB 6091 c.852G>C synonymous_variant 0.17
gyrB 6097 c.858G>A synonymous_variant 0.18
gyrB 6115 c.876A>G synonymous_variant 0.23
gyrB 6121 c.882C>T synonymous_variant 0.29
gyrB 6127 c.888G>C synonymous_variant 0.3
gyrB 6145 c.906C>T synonymous_variant 0.34
gyrB 6178 c.939C>T synonymous_variant 0.28
gyrB 6181 c.942C>G synonymous_variant 0.3
gyrB 6196 c.957C>G synonymous_variant 0.27
gyrB 6214 c.975G>C synonymous_variant 0.26
gyrB 6247 c.1008G>A synonymous_variant 0.27
gyrB 6250 c.1011A>G synonymous_variant 0.32
gyrB 6253 c.1014G>C synonymous_variant 0.29
gyrB 6259 p.Asp340Glu missense_variant 0.33
gyrB 6280 c.1041T>C synonymous_variant 0.24
gyrB 6286 c.1047T>C synonymous_variant 0.31
gyrB 6298 c.1059C>G synonymous_variant 0.19
gyrB 6299 c.1060C>T synonymous_variant 0.17
gyrA 6307 c.-995T>G upstream_gene_variant 0.28
gyrA 6313 c.-989C>T upstream_gene_variant 0.17
gyrA 6331 c.-971A>G upstream_gene_variant 0.24
gyrA 6361 c.-941G>A upstream_gene_variant 0.19
gyrA 6362 c.-940T>C upstream_gene_variant 0.19
gyrA 7024 c.-278G>C upstream_gene_variant 0.17
gyrA 7030 c.-272C>A upstream_gene_variant 0.18
gyrA 7033 c.-269G>C upstream_gene_variant 0.21
gyrA 7060 c.-242T>C upstream_gene_variant 0.27
gyrA 7066 c.-236G>C upstream_gene_variant 0.22
gyrA 7081 c.-221T>C upstream_gene_variant 0.2
gyrA 7090 c.-212C>T upstream_gene_variant 0.21
gyrA 7093 c.-209T>C upstream_gene_variant 0.23
gyrA 7099 c.-203G>A upstream_gene_variant 0.21
gyrA 7108 c.-194G>A upstream_gene_variant 0.23
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 7595 c.294C>G synonymous_variant 0.21
gyrA 7601 c.300C>G synonymous_variant 0.22
gyrA 7728 c.427_429delAGGinsCGC synonymous_variant 0.17
gyrA 7784 c.483A>G synonymous_variant 0.26
gyrA 7787 c.486G>A synonymous_variant 0.16
gyrA 7799 c.498A>G synonymous_variant 0.26
gyrA 7835 c.534A>C synonymous_variant 0.23
gyrA 7838 c.537C>T synonymous_variant 0.24
gyrA 7850 c.549C>G synonymous_variant 0.18
gyrA 7859 c.558A>C synonymous_variant 0.18
gyrA 8121 c.820T>C synonymous_variant 0.16
gyrA 8156 c.855T>C synonymous_variant 0.22
gyrA 8168 c.867A>G synonymous_variant 0.19
gyrA 8177 c.876A>C synonymous_variant 0.16
gyrA 8264 c.963T>C synonymous_variant 0.16
gyrA 8324 c.1023T>C synonymous_variant 0.16
gyrA 8486 c.1185T>C synonymous_variant 0.19
gyrA 8516 c.1215T>C synonymous_variant 0.18
gyrA 8531 c.1230G>A synonymous_variant 0.19
gyrA 8546 c.1245T>C synonymous_variant 0.3
gyrA 8561 c.1260A>G synonymous_variant 0.2
gyrA 8562 c.1261C>T synonymous_variant 0.18
gyrA 8571 c.1270C>T synonymous_variant 0.18
gyrA 8603 c.1302A>G synonymous_variant 0.32
gyrA 8609 c.1308G>C synonymous_variant 0.29
gyrA 8619 c.1318T>C synonymous_variant 0.29
gyrA 8627 c.1326C>T synonymous_variant 0.17
gyrA 8633 c.1332C>G synonymous_variant 0.19
gyrA 8645 c.1344C>T synonymous_variant 0.25
gyrA 8655 p.Ile452Val missense_variant 0.26
gyrA 8693 c.1392T>C synonymous_variant 0.27
gyrA 8711 c.1410A>C synonymous_variant 0.3
gyrA 8723 c.1422G>A synonymous_variant 0.19
gyrA 8729 c.1428T>C synonymous_variant 0.29
gyrA 8756 c.1455A>G synonymous_variant 0.24
gyrA 8762 c.1461G>C synonymous_variant 0.24
gyrA 8767 p.Arg489Lys missense_variant 0.22
gyrA 8783 c.1482G>T synonymous_variant 0.15
gyrA 8810 c.1509A>C synonymous_variant 0.19
gyrA 8828 c.1527T>C synonymous_variant 0.25
gyrA 8829 c.1528T>C synonymous_variant 0.25
gyrA 8852 c.1551T>C synonymous_variant 0.21
gyrA 8855 c.1554C>G synonymous_variant 0.17
gyrA 8858 c.1557T>C synonymous_variant 0.27
gyrA 8867 c.1566A>G synonymous_variant 0.18
gyrA 8870 c.1569G>C synonymous_variant 0.28
gyrA 8873 c.1572A>C synonymous_variant 0.27
gyrA 8876 c.1575C>T synonymous_variant 0.28
gyrA 8897 c.1596T>C synonymous_variant 0.29
gyrA 8903 c.1602T>C synonymous_variant 0.26
gyrA 8915 c.1614A>G synonymous_variant 0.23
gyrA 8933 c.1632G>A synonymous_variant 0.2
gyrA 8942 c.1641G>C synonymous_variant 0.16
gyrA 8946 c.1645_1647delTTGinsCTC synonymous_variant 0.17
gyrA 8987 c.1686C>G synonymous_variant 0.18
gyrA 8998 p.Leu566Trp missense_variant 0.19
gyrA 9023 c.1722A>C synonymous_variant 0.17
gyrA 9029 c.1728T>G synonymous_variant 0.23
gyrA 9050 p.Asp583Glu missense_variant 0.24
gyrA 9065 c.1764C>G synonymous_variant 0.19
gyrA 9071 c.1770G>C synonymous_variant 0.18
gyrA 9182 c.1881T>C synonymous_variant 0.15
gyrA 9185 c.1884C>T synonymous_variant 0.15
gyrA 9230 c.1929T>C synonymous_variant 0.23
gyrA 9242 c.1941A>C synonymous_variant 0.23
gyrA 9284 c.1983T>G synonymous_variant 0.27
gyrA 9296 c.1995T>C synonymous_variant 0.26
gyrA 9304 p.Gly668Glu missense_variant 1.0
gyrA 9345 c.2044A>C synonymous_variant 0.16
gyrA 9452 c.2151G>C synonymous_variant 0.15
fgd1 490803 c.21T>A synonymous_variant 0.18
fgd1 490818 c.36C>T synonymous_variant 0.26
fgd1 490830 c.48A>C synonymous_variant 0.28
fgd1 490851 c.69A>G synonymous_variant 0.19
fgd1 490854 c.72C>T synonymous_variant 0.17
fgd1 490857 c.75C>G synonymous_variant 0.17
fgd1 490869 c.87C>T synonymous_variant 0.15
fgd1 490896 c.114C>T synonymous_variant 0.23
fgd1 490905 c.123T>C synonymous_variant 0.17
fgd1 491043 c.261T>G synonymous_variant 0.16
fgd1 491106 c.324T>C synonymous_variant 0.17
fgd1 491526 c.744T>C synonymous_variant 0.2
fgd1 491542 c.760T>C synonymous_variant 0.21
fgd1 491547 c.765A>C synonymous_variant 0.19
fgd1 491550 c.768T>C synonymous_variant 0.19
fgd1 491601 c.819T>C synonymous_variant 0.18
fgd1 491610 c.828A>G synonymous_variant 0.19
fgd1 491616 c.834A>G synonymous_variant 0.18
fgd1 491742 c.960T>C synonymous_variant 1.0
mshA 575539 c.192C>T synonymous_variant 0.18
mshA 575561 p.Met72Val missense_variant 0.22
mshA 575590 c.243T>G synonymous_variant 0.23
mshA 575635 c.288A>G synonymous_variant 0.19
mshA 575652 p.Arg102Gln missense_variant 0.19
mshA 575659 c.312A>G synonymous_variant 0.2
mshA 575662 c.315C>A synonymous_variant 0.17
mshA 575665 c.318G>C synonymous_variant 0.18
mshA 575705 c.358T>C synonymous_variant 0.17
mshA 575713 c.366G>A synonymous_variant 0.19
mshA 575734 c.387T>G synonymous_variant 0.15
mshA 575746 c.399C>G synonymous_variant 0.26
mshA 575772 p.Val142Ala missense_variant 0.29
mshA 575785 c.438T>C synonymous_variant 0.34
mshA 575821 c.474G>C synonymous_variant 0.35
mshA 575824 c.477T>C synonymous_variant 0.23
mshA 575842 c.495G>C synonymous_variant 0.18
mshA 575848 c.501C>T synonymous_variant 0.18
mshA 575860 c.513G>A synonymous_variant 0.18
mshA 575864 c.517T>C synonymous_variant 0.17
mshA 575872 c.525C>T synonymous_variant 0.17
mshA 575878 c.531A>G synonymous_variant 0.22
mshA 575884 c.537G>C synonymous_variant 0.31
mshA 575893 c.546C>G synonymous_variant 0.28
mshA 575905 c.558G>C synonymous_variant 0.21
mshA 575907 p.Ala187Val missense_variant 0.76
mshA 575916 p.Asp190Ala missense_variant 0.17
mshA 575924 p.Gly193Ile missense_variant 0.15
ccsA 620571 c.681A>G synonymous_variant 0.16
ccsA 620604 c.714C>G synonymous_variant 0.25
ccsA 620607 c.717T>G synonymous_variant 0.23
ccsA 620613 c.723C>T synonymous_variant 0.24
ccsA 620619 c.729G>A synonymous_variant 0.22
ccsA 620622 c.732G>C synonymous_variant 0.25
ccsA 620625 p.Ile245Met missense_variant 1.0
ccsA 620631 c.741T>G synonymous_variant 0.21
rpoB 760112 c.306T>C synonymous_variant 0.17
rpoB 760121 c.315T>C synonymous_variant 0.23
rpoB 760184 c.378A>G synonymous_variant 0.29
rpoB 760196 c.390C>G synonymous_variant 0.3
rpoB 760235 c.429T>C synonymous_variant 0.35
rpoB 760244 c.438G>C synonymous_variant 0.17
rpoB 760256 c.450C>T synonymous_variant 0.22
rpoB 760274 c.468G>A synonymous_variant 0.18
rpoB 760298 c.492G>C synonymous_variant 0.2
rpoB 760307 c.501T>C synonymous_variant 0.36
rpoB 760328 c.522G>C synonymous_variant 0.34
rpoB 760340 c.534G>T synonymous_variant 0.35
rpoB 760343 c.537G>C synonymous_variant 0.19
rpoB 760361 c.555T>C synonymous_variant 0.3
rpoB 760424 c.618C>G synonymous_variant 0.25
rpoB 760430 c.624T>C synonymous_variant 0.25
rpoB 760475 c.669A>G synonymous_variant 0.35
rpoB 760478 c.672C>T synonymous_variant 0.17
rpoB 760481 c.675G>T synonymous_variant 0.16
rpoB 760484 c.678A>G synonymous_variant 0.38
rpoB 760508 c.702G>C synonymous_variant 0.2
rpoB 760511 c.705G>C synonymous_variant 0.2
rpoB 760522 p.Ser239Asn missense_variant 0.18
rpoB 760528 p.Gln241Arg missense_variant 0.18
rpoB 760532 c.726T>C synonymous_variant 0.17
rpoB 760533 p.Val243Thr missense_variant 0.21
rpoB 760547 c.741G>C synonymous_variant 0.18
rpoB 760556 c.750G>A synonymous_variant 0.19
rpoB 760563 p.Arg253Met missense_variant 0.31
rpoB 760591 p.Val262Ala missense_variant 0.35
rpoB 760598 c.792C>T synonymous_variant 0.19
rpoB 760611 c.805T>C synonymous_variant 0.29
rpoB 760646 c.840C>G synonymous_variant 0.28
rpoB 760655 c.849A>G synonymous_variant 0.26
rpoB 760661 c.855A>C synonymous_variant 0.27
rpoB 760670 c.864G>C synonymous_variant 0.25
rpoB 760674 c.868T>C synonymous_variant 0.22
rpoB 760679 c.873A>G synonymous_variant 0.22
rpoB 760683 c.877T>C synonymous_variant 0.22
rpoB 760817 c.1011A>G synonymous_variant 0.18
rpoB 760830 c.1024T>C synonymous_variant 0.24
rpoB 760841 c.1035T>C synonymous_variant 0.24
rpoB 760845 p.Thr347Ala missense_variant 0.2
rpoB 760859 c.1053T>G synonymous_variant 0.18
rpoB 760868 c.1062C>G synonymous_variant 0.19
rpoB 760919 c.1113C>G synonymous_variant 0.18
rpoB 760928 c.1122G>C synonymous_variant 0.23
rpoB 760946 c.1140A>G synonymous_variant 0.27
rpoB 760971 c.1165C>A synonymous_variant 0.18
rpoB 760994 c.1188G>A synonymous_variant 0.2
rpoB 761006 c.1200C>T synonymous_variant 0.18
rpoB 761015 c.1209G>C synonymous_variant 0.23
rpoB 761027 c.1221A>G synonymous_variant 0.25
rpoB 761037 c.1231T>C synonymous_variant 0.22
rpoB 761051 c.1245G>C synonymous_variant 0.15
rpoB 761066 c.1260G>C synonymous_variant 0.18
rpoB 761097 c.1291_1292delAGinsTC synonymous_variant 0.22
rpoB 761102 c.1296A>G synonymous_variant 0.22
rpoB 761132 c.1326G>C synonymous_variant 0.16
rpoB 761133 c.1327_1329delTTGinsCTC synonymous_variant 0.24
rpoB 761207 c.1401C>T synonymous_variant 0.22
rpoB 761249 c.1443A>G synonymous_variant 0.19
rpoB 761255 c.1449T>G synonymous_variant 0.22
rpoB 761327 c.1521A>G synonymous_variant 0.25
rpoB 761354 c.1548C>T synonymous_variant 0.25
rpoB 761360 c.1554T>C synonymous_variant 0.26
rpoB 761367 p.Glu521Gln missense_variant 0.26
rpoB 761374 p.Val523Asp missense_variant 0.26
rpoB 761408 c.1602G>C synonymous_variant 0.27
rpoB 761414 c.1608A>G synonymous_variant 0.2
rpoB 761423 c.1617T>C synonymous_variant 0.29
rpoB 761435 c.1629T>C synonymous_variant 0.31
rpoB 761438 c.1632G>C synonymous_variant 0.22
rpoB 761444 c.1638T>C synonymous_variant 0.31
rpoB 761471 c.1665C>G synonymous_variant 0.17
rpoB 761483 c.1677G>C synonymous_variant 0.27
rpoB 761492 c.1686G>C synonymous_variant 0.29
rpoB 761502 p.Pro566Ala missense_variant 0.18
rpoB 761510 c.1704T>G synonymous_variant 0.2
rpoB 761537 c.1731C>G synonymous_variant 0.24
rpoB 761561 c.1755C>G synonymous_variant 0.27
rpoB 761564 c.1758G>C synonymous_variant 0.29
rpoB 761573 c.1767C>G synonymous_variant 0.3
rpoB 761579 c.1773G>C synonymous_variant 0.3
rpoB 761582 c.1776G>A synonymous_variant 0.2
rpoB 761606 c.1800C>G synonymous_variant 0.32
rpoB 761612 c.1806G>T synonymous_variant 0.34
rpoB 761615 c.1809A>C synonymous_variant 0.33
rpoB 761636 c.1830G>T synonymous_variant 0.35
rpoB 761645 c.1839C>G synonymous_variant 0.34
rpoB 761648 c.1842T>C synonymous_variant 0.35
rpoB 761657 c.1851C>G synonymous_variant 0.28
rpoB 762014 c.2208C>T synonymous_variant 0.15
rpoB 762017 c.2211A>G synonymous_variant 0.25
rpoB 762050 c.2244G>A synonymous_variant 0.18
rpoB 762053 c.2247T>C synonymous_variant 0.31
rpoB 762065 c.2259T>C synonymous_variant 0.29
rpoB 762083 c.2277T>C synonymous_variant 0.28
rpoB 762086 c.2280G>C synonymous_variant 0.27
rpoB 762114 p.Ile770Val missense_variant 0.3
rpoB 762119 c.2313C>T synonymous_variant 0.17
rpoB 762131 c.2325C>G synonymous_variant 0.18
rpoB 762134 c.2328C>G synonymous_variant 0.18
rpoB 762167 c.2361T>C synonymous_variant 0.21
rpoB 762185 c.2379G>C synonymous_variant 0.31
rpoB 762218 c.2412T>G synonymous_variant 0.17
rpoB 762224 c.2418C>G synonymous_variant 0.17
rpoB 762236 c.2430G>A synonymous_variant 0.17
rpoB 762254 c.2448T>G synonymous_variant 0.97
rpoB 762257 c.2451C>G synonymous_variant 0.29
rpoB 762266 c.2460T>C synonymous_variant 0.17
rpoB 762269 c.2463G>A synonymous_variant 0.16
rpoB 762284 c.2478G>C synonymous_variant 0.26
rpoB 762293 c.2487T>C synonymous_variant 0.29
rpoB 762317 c.2511A>G synonymous_variant 0.21
rpoB 762347 c.2541T>C synonymous_variant 0.21
rpoB 762362 p.Glu852Asp missense_variant 0.19
rpoB 762369 c.2563T>C synonymous_variant 0.18
rpoC 762374 c.-996G>C upstream_gene_variant 0.21
rpoC 762395 c.-975G>C upstream_gene_variant 0.2
rpoC 762398 c.-972T>C upstream_gene_variant 0.21
rpoC 762404 c.-966T>C upstream_gene_variant 0.22
rpoC 762410 c.-960T>C upstream_gene_variant 0.23
rpoC 762416 c.-954A>G upstream_gene_variant 0.25
rpoC 762470 c.-900G>C upstream_gene_variant 0.21
rpoB 762510 p.Ala902Pro missense_variant 0.19
rpoC 762533 c.-837T>C upstream_gene_variant 0.17
rpoC 762536 c.-834T>C upstream_gene_variant 0.17
rpoC 762537 c.-833T>C upstream_gene_variant 0.18
rpoC 762551 c.-819C>T upstream_gene_variant 0.17
rpoC 762857 c.-513C>G upstream_gene_variant 0.19
rpoC 762899 c.-471G>C upstream_gene_variant 0.16
rpoC 762920 c.-450C>G upstream_gene_variant 0.15
rpoC 762929 c.-441G>T upstream_gene_variant 0.2
rpoC 762962 c.-408C>T upstream_gene_variant 0.17
rpoC 762983 c.-387C>A upstream_gene_variant 0.16
rpoC 762995 c.-375G>T upstream_gene_variant 0.21
rpoC 763028 c.-342T>C upstream_gene_variant 0.33
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoC 763034 c.-336C>G upstream_gene_variant 0.34
rpoC 763040 c.-330C>G upstream_gene_variant 0.35
rpoC 763050 c.-320C>T upstream_gene_variant 0.22
rpoC 763070 c.-300T>C upstream_gene_variant 0.31
rpoC 763076 c.-294C>T upstream_gene_variant 0.17
rpoC 763085 c.-285C>G upstream_gene_variant 0.28
rpoC 763115 c.-255T>C upstream_gene_variant 0.26
rpoC 763127 c.-243G>C upstream_gene_variant 0.23
rpoC 763169 c.-201A>G upstream_gene_variant 0.22
rpoC 763202 c.-168A>G upstream_gene_variant 0.17
rpoC 763206 c.-164_-163delAGinsTC upstream_gene_variant 0.17
rpoC 763408 c.39T>C synonymous_variant 0.16
rpoC 763411 c.42T>G synonymous_variant 0.16
rpoC 763414 c.45T>C synonymous_variant 0.16
rpoC 763444 c.75T>C synonymous_variant 0.19
rpoC 763456 c.87A>G synonymous_variant 0.22
rpoC 763468 c.99G>C synonymous_variant 0.21
rpoC 763486 c.117T>C synonymous_variant 0.27
rpoC 763505 c.136C>T synonymous_variant 0.17
rpoC 763636 c.267T>G synonymous_variant 0.23
rpoC 763660 c.291T>G synonymous_variant 0.2
rpoC 763702 c.333C>G synonymous_variant 0.16
rpoC 763714 c.345G>C synonymous_variant 0.19
rpoC 763732 c.363C>G synonymous_variant 0.19
rpoC 763744 c.375G>C synonymous_variant 0.22
rpoC 763765 c.396T>C synonymous_variant 0.26
rpoC 763771 c.402C>T synonymous_variant 0.16
rpoC 763781 p.Ser138Ala missense_variant 0.26
rpoC 763807 c.438T>C synonymous_variant 0.22
rpoC 763836 p.Ala156Val missense_variant 0.23
rpoC 763855 c.486C>T synonymous_variant 0.2
rpoC 763858 c.489A>G synonymous_variant 0.2
rpoC 763872 p.Gly168Ala missense_variant 0.19
rpoC 763876 p.Glu169Asp missense_variant 0.19
rpoC 763879 c.510A>G synonymous_variant 0.19
rpoC 763888 c.519G>T synonymous_variant 0.17
rpoC 763924 c.555G>A synonymous_variant 0.17
rpoC 763936 c.567C>G synonymous_variant 0.16
rpoC 763991 p.Ile208Leu missense_variant 0.19
rpoC 763996 c.627T>C synonymous_variant 0.2
rpoC 764005 c.636G>C synonymous_variant 0.22
rpoC 764024 c.655T>C synonymous_variant 0.3
rpoC 764040 p.Ser224Thr missense_variant 0.19
rpoC 764044 c.675T>G synonymous_variant 0.2
rpoC 764056 c.687G>T synonymous_variant 0.17
rpoC 764059 c.690G>T synonymous_variant 0.21
rpoC 764080 c.711C>T synonymous_variant 0.19
rpoC 764083 c.714A>G synonymous_variant 0.34
rpoC 764098 c.729A>G synonymous_variant 0.2
rpoC 764131 c.762T>C synonymous_variant 0.19
rpoC 764140 c.771C>T synonymous_variant 0.18
rpoC 764161 c.792G>C synonymous_variant 0.19
rpoC 764203 c.834G>C synonymous_variant 0.17
rpoC 764206 p.Asp279Glu missense_variant 0.17
rpoC 764217 p.Asn283Ser missense_variant 0.16
rpoC 764278 c.909A>G synonymous_variant 0.32
rpoC 764284 c.915G>C synonymous_variant 0.18
rpoC 764317 c.948C>G synonymous_variant 0.25
rpoC 764320 c.951C>T synonymous_variant 0.23
rpoC 764339 c.970C>T synonymous_variant 0.16
rpoC 764344 c.975C>T synonymous_variant 0.18
rpoC 764347 c.978G>C synonymous_variant 0.18
rpoC 764365 c.996C>T synonymous_variant 0.2
rpoC 764387 c.1018T>C synonymous_variant 0.17
rpoC 764405 c.1036A>C synonymous_variant 0.21
rpoC 764428 c.1059G>T synonymous_variant 0.16
rpoC 764431 c.1062G>C synonymous_variant 0.24
rpoC 764434 c.1065A>G synonymous_variant 0.24
rpoC 764446 c.1077T>C synonymous_variant 0.24
rpoC 764449 c.1080G>C synonymous_variant 0.23
rpoC 764452 c.1083T>G synonymous_variant 0.18
rpoC 764455 c.1086G>T synonymous_variant 0.17
rpoC 764458 c.1089G>C synonymous_variant 0.25
rpoC 764461 c.1092A>G synonymous_variant 0.24
rpoC 764497 c.1128A>G synonymous_variant 0.22
rpoC 764500 c.1131C>G synonymous_variant 0.21
rpoC 764521 c.1152T>C synonymous_variant 0.23
rpoC 764536 c.1167G>C synonymous_variant 0.17
rpoC 764539 c.1170C>G synonymous_variant 0.27
rpoC 764548 c.1179G>A synonymous_variant 0.17
rpoC 764554 c.1185C>T synonymous_variant 0.2
rpoC 764575 c.1206T>G synonymous_variant 0.26
rpoC 764578 c.1209C>G synonymous_variant 0.16
rpoC 764611 c.1242G>T synonymous_variant 0.16
rpoC 764626 c.1257C>T synonymous_variant 0.17
rpoC 764650 c.1281G>T synonymous_variant 0.17
rpoC 764668 c.1299C>T synonymous_variant 0.25
rpoC 764752 c.1383G>C synonymous_variant 0.24
rpoC 764764 c.1395T>C synonymous_variant 0.29
rpoC 764767 c.1398G>C synonymous_variant 0.16
rpoC 764791 c.1422C>G synonymous_variant 0.17
rpoC 764800 c.1431G>A synonymous_variant 0.16
rpoC 764803 c.1434C>T synonymous_variant 0.17
rpoC 764809 c.1440C>T synonymous_variant 0.23
rpoC 764815 c.1446A>G synonymous_variant 0.22
rpoC 764830 c.1461C>G synonymous_variant 0.2
rpoC 764833 c.1464A>G synonymous_variant 0.26
rpoC 764872 c.1503A>G synonymous_variant 0.22
rpoC 764875 c.1506C>A synonymous_variant 0.18
rpoC 764888 c.1519_1521delTTGinsCTC synonymous_variant 0.19
rpoC 764902 c.1533C>G synonymous_variant 0.16
rpoC 764911 c.1542A>G synonymous_variant 0.16
rpoC 764918 p.Val517Met missense_variant 0.15
rpoC 764923 c.1554A>G synonymous_variant 0.21
rpoC 764948 c.1579T>C synonymous_variant 0.18
rpoC 765409 c.2040T>C synonymous_variant 0.21
rpoC 765412 c.2043T>C synonymous_variant 0.15
rpoC 765421 c.2052C>G synonymous_variant 0.16
rpoC 765451 c.2082C>T synonymous_variant 0.21
rpoC 765478 c.2109T>C synonymous_variant 0.28
rpoC 765499 c.2130C>A synonymous_variant 0.19
rpoC 765529 c.2160C>T synonymous_variant 0.17
rpoC 765541 c.2172C>G synonymous_variant 0.17
rpoC 765547 c.2178C>A synonymous_variant 0.27
rpoC 765556 c.2187G>C synonymous_variant 0.24
rpoC 765562 c.2193G>C synonymous_variant 0.23
rpoC 765583 c.2214G>T synonymous_variant 0.23
rpoC 765628 c.2259G>C synonymous_variant 0.18
rpoC 765700 c.2331T>C synonymous_variant 0.23
rpoC 765734 c.2365T>C synonymous_variant 0.23
rpoC 765784 c.2415C>G synonymous_variant 0.22
rpoC 765787 c.2418C>T synonymous_variant 0.21
rpoC 765793 c.2424C>G synonymous_variant 0.22
rpoC 765796 c.2427C>T synonymous_variant 0.22
rpoC 765811 c.2442T>C synonymous_variant 0.21
rpoC 765835 c.2466C>T synonymous_variant 0.23
rpoC 765883 c.2514C>G synonymous_variant 0.25
rpoC 765886 c.2517C>G synonymous_variant 0.25
rpoC 765892 c.2523T>C synonymous_variant 0.27
rpoC 765910 c.2541G>C synonymous_variant 0.2
rpoC 765934 c.2565C>T synonymous_variant 0.17
rpoC 765952 c.2583G>C synonymous_variant 0.24
rpoC 765967 c.2598C>T synonymous_variant 0.25
rpoC 765979 c.2610C>G synonymous_variant 0.23
rpoC 765994 c.2625A>T synonymous_variant 0.19
rpoC 766105 c.2736C>T synonymous_variant 0.19
rpoC 766274 p.Ala969Thr missense_variant 0.15
rpoC 766280 p.Ser971Gly missense_variant 0.15
rpoC 766315 c.2946C>G synonymous_variant 0.21
rpoC 766381 c.3012C>T synonymous_variant 0.18
rpoC 766384 c.3015A>G synonymous_variant 0.22
rpoC 766408 c.3039C>T synonymous_variant 0.29
rpoC 766417 c.3048C>T synonymous_variant 0.18
rpoC 766426 c.3057C>T synonymous_variant 0.29
rpoC 766483 c.3114G>C synonymous_variant 0.19
rpoC 766486 c.3117A>G synonymous_variant 0.32
rpoC 766492 c.3123T>C synonymous_variant 0.21
rpoC 766495 c.3126C>T synonymous_variant 0.17
rpoC 766540 c.3171C>T synonymous_variant 0.18
rpoC 766543 c.3174C>T synonymous_variant 0.27
rpoC 766549 c.3180G>C synonymous_variant 0.23
rpoC 766570 c.3201T>C synonymous_variant 0.24
rpoC 766573 c.3204T>C synonymous_variant 0.29
rpoC 766579 c.3210C>T synonymous_variant 0.2
rpoC 766585 c.3216T>C synonymous_variant 0.28
rpoC 766594 c.3225G>C synonymous_variant 0.26
rpoC 766607 p.Ile1080Leu missense_variant 0.3
rpoC 766657 c.3288A>G synonymous_variant 0.28
rpoC 766660 c.3291G>A synonymous_variant 0.15
rpoC 766666 c.3297C>T synonymous_variant 0.16
rpoC 766672 c.3303T>C synonymous_variant 0.25
rpoC 766726 c.3357T>C synonymous_variant 0.24
rpoC 766765 c.3396A>C synonymous_variant 0.25
rpoC 766774 c.3405T>C synonymous_variant 0.28
rpoC 766804 c.3435A>G synonymous_variant 0.22
rpoC 766843 c.3474T>G synonymous_variant 0.14
rpoC 766864 c.3495G>C synonymous_variant 0.21
rpoC 766894 c.3525T>C synonymous_variant 0.17
rpoC 766895 c.3526T>C synonymous_variant 0.17
rpoC 766903 c.3534C>T synonymous_variant 0.2
rpoC 766918 c.3549C>T synonymous_variant 0.2
rpoC 766933 c.3564A>G synonymous_variant 0.17
rpoC 766945 c.3576A>G synonymous_variant 0.18
rpoC 766963 c.3594T>C synonymous_variant 0.19
rpoC 766972 c.3603G>C synonymous_variant 0.22
rpoC 766975 c.3606C>T synonymous_variant 0.17
rpoC 766996 c.3627C>T synonymous_variant 0.31
rpoC 767002 c.3633G>C synonymous_variant 0.28
rpoC 767033 c.3664_3666delTCGinsAGT synonymous_variant 0.26
rpoC 767059 c.3690T>G synonymous_variant 0.29
rpoC 767062 c.3693C>A synonymous_variant 0.29
rpoC 767098 c.3729T>C synonymous_variant 0.28
rpoC 767119 c.3750A>G synonymous_variant 0.24
rpoC 767221 c.3852C>G synonymous_variant 0.16
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
mmpL5 776182 p.Asp767Asn missense_variant 1.0
mmpS5 779615 c.-710C>G upstream_gene_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 0.96
rpsL 781571 c.12C>T synonymous_variant 0.2
rpsL 781608 p.Ser17Ala missense_variant 0.34
rpsL 781628 c.69T>C synonymous_variant 0.31
rpsL 781631 c.72G>C synonymous_variant 0.18
rpsL 781649 c.90T>C synonymous_variant 0.35
rpsL 781655 c.96T>C synonymous_variant 0.33
rpsL 781658 c.99A>G synonymous_variant 0.22
rpsL 781664 c.105C>T synonymous_variant 0.22
rpsL 781667 c.108C>G synonymous_variant 0.21
rpsL 781709 c.150G>C synonymous_variant 0.18
rpsL 781715 c.156T>C synonymous_variant 0.25
rpsL 781718 c.159C>G synonymous_variant 0.25
rpsL 781721 c.162C>G synonymous_variant 0.22
rpsL 781728 c.169T>C synonymous_variant 0.31
rpsL 781742 c.183C>T synonymous_variant 0.22
rpsL 781760 c.201T>C synonymous_variant 0.33
rpsL 781808 c.249C>T synonymous_variant 0.38
rpsL 781832 c.273T>C synonymous_variant 0.38
rpsL 781841 c.282C>G synonymous_variant 0.18
rpsL 781847 c.288G>A synonymous_variant 0.17
rpsL 781868 c.309T>C synonymous_variant 0.32
rpsL 781871 c.312G>C synonymous_variant 0.32
rpsL 781877 c.318T>A synonymous_variant 0.15
rpsL 781892 c.333A>G synonymous_variant 0.29
rpsL 781898 c.339A>T synonymous_variant 0.3
rpsL 781916 c.357T>C synonymous_variant 0.25
rpsL 781929 p.Gly124Ser missense_variant 0.23
rplC 800612 c.-197A>G upstream_gene_variant 0.24
rplC 800618 c.-191T>C upstream_gene_variant 0.25
rplC 800648 c.-161A>C upstream_gene_variant 0.21
rplC 800693 c.-116A>C upstream_gene_variant 0.26
rplC 800714 c.-95C>T upstream_gene_variant 0.22
rplC 800715 c.-94A>C upstream_gene_variant 0.22
rplC 800723 c.-86C>G upstream_gene_variant 0.22
rplC 800759 c.-50C>T upstream_gene_variant 0.16
rplC 800771 c.-38C>T upstream_gene_variant 0.18
rplC 800844 c.36T>C synonymous_variant 0.18
rplC 801174 c.366T>C synonymous_variant 0.16
rplC 801210 c.402T>C synonymous_variant 0.18
rplC 801222 c.414T>C synonymous_variant 0.16
rplC 801246 c.438C>G synonymous_variant 0.2
rplC 801252 c.444G>C synonymous_variant 0.19
rplC 801312 c.504G>C synonymous_variant 0.19
fbiC 1303545 c.615A>G synonymous_variant 0.18
fbiC 1304757 c.1827A>G synonymous_variant 0.16
fbiC 1304784 c.1854T>G synonymous_variant 0.2
fbiC 1304787 c.1857T>C synonymous_variant 0.19
fbiC 1304799 c.1869G>C synonymous_variant 0.2
fbiC 1304832 c.1902C>T synonymous_variant 0.27
fbiC 1304856 c.1926C>G synonymous_variant 0.23
fbiC 1304893 p.Gly655Ser missense_variant 0.24
fbiC 1304915 p.Asp662Gly missense_variant 0.25
fbiC 1304937 c.2007G>C synonymous_variant 0.17
fbiC 1304940 c.2010A>G synonymous_variant 0.17
fbiC 1304946 c.2016G>C synonymous_variant 0.17
fbiC 1304958 c.2028T>G synonymous_variant 0.16
Rv1258c 1406760 c.580_581insC frameshift_variant 0.98
atpE 1461161 c.117C>T synonymous_variant 0.19
atpE 1461167 c.123G>T synonymous_variant 0.18
atpE 1461170 c.126A>G synonymous_variant 0.19
atpE 1461185 c.141G>A synonymous_variant 0.24
atpE 1461197 c.153A>C synonymous_variant 0.24
atpE 1461219 c.175T>C synonymous_variant 0.28
atpE 1461224 c.180T>C synonymous_variant 0.22
atpE 1461230 c.186G>T synonymous_variant 0.21
atpE 1461233 c.189A>C synonymous_variant 0.23
atpE 1461254 c.210T>C synonymous_variant 0.2
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 0.15
rrs 1471970 n.125G>A non_coding_transcript_exon_variant 0.23
rrs 1472030 n.185G>T non_coding_transcript_exon_variant 0.22
rrs 1472031 n.186G>T non_coding_transcript_exon_variant 0.23
rrs 1472033 n.188A>G non_coding_transcript_exon_variant 0.21
rrs 1472034 n.189T>C non_coding_transcript_exon_variant 0.2
rrs 1472040 n.195T>C non_coding_transcript_exon_variant 0.25
rrs 1472053 n.211_212delGC non_coding_transcript_exon_variant 0.3
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 0.32
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.35
rrs 1472686 n.841G>A non_coding_transcript_exon_variant 0.16
rrs 1472969 n.1124A>G non_coding_transcript_exon_variant 0.27
rrs 1472970 n.1125C>G non_coding_transcript_exon_variant 0.17
rrs 1472977 n.1132G>C non_coding_transcript_exon_variant 0.16
rrs 1472978 n.1133T>C non_coding_transcript_exon_variant 0.27
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.24
rrl 1473797 n.140G>T non_coding_transcript_exon_variant 0.2
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.38
rrl 1473813 n.156C>T non_coding_transcript_exon_variant 0.23
rrl 1473839 n.182G>T non_coding_transcript_exon_variant 0.2
rrl 1473877 n.220G>A non_coding_transcript_exon_variant 0.31
rrl 1473887 n.230T>A non_coding_transcript_exon_variant 0.28
rrl 1473888 n.231T>A non_coding_transcript_exon_variant 0.28
rrl 1473899 n.242A>G non_coding_transcript_exon_variant 0.16
rrl 1473916 n.259C>A non_coding_transcript_exon_variant 0.2
rrl 1473937 n.280C>T non_coding_transcript_exon_variant 0.21
rrl 1473943 n.286G>T non_coding_transcript_exon_variant 0.2
rrl 1473995 n.338G>T non_coding_transcript_exon_variant 0.21
rrl 1474009 n.352A>G non_coding_transcript_exon_variant 0.19
rrl 1474103 n.446A>T non_coding_transcript_exon_variant 0.34
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.31
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.29
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.23
rrl 1474639 n.982G>A non_coding_transcript_exon_variant 0.22
rrl 1474717 n.1060A>T non_coding_transcript_exon_variant 0.22
rrl 1474794 n.1137C>A non_coding_transcript_exon_variant 0.16
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 0.25
rrl 1475061 n.1404C>T non_coding_transcript_exon_variant 0.36
rrl 1475213 n.1556C>T non_coding_transcript_exon_variant 0.19
rrl 1475266 n.1609T>C non_coding_transcript_exon_variant 0.32
rrl 1475273 n.1616T>G non_coding_transcript_exon_variant 0.32
rrl 1475289 n.1632G>A non_coding_transcript_exon_variant 0.26
rrl 1475290 n.1633A>G non_coding_transcript_exon_variant 0.26
rrl 1475291 n.1634A>C non_coding_transcript_exon_variant 0.26
rrl 1475315 n.1658A>T non_coding_transcript_exon_variant 0.32
rrl 1475333 n.1676T>C non_coding_transcript_exon_variant 0.29
rrl 1475355 n.1698C>T non_coding_transcript_exon_variant 0.33
rrl 1475369 n.1712G>A non_coding_transcript_exon_variant 0.29
rrl 1475403 n.1746T>A non_coding_transcript_exon_variant 0.25
rrl 1475429 n.1772G>A non_coding_transcript_exon_variant 0.31
rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 0.16
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.38
rrl 1475608 n.1951T>C non_coding_transcript_exon_variant 0.25
rrl 1475638 n.1981C>T non_coding_transcript_exon_variant 0.18
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 0.3
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.18
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.41
rrl 1475999 n.2342G>T non_coding_transcript_exon_variant 0.2
rrl 1476035 n.2378G>A non_coding_transcript_exon_variant 0.3
rrl 1476045 n.2388G>A non_coding_transcript_exon_variant 0.17
rrl 1476047 n.2390G>A non_coding_transcript_exon_variant 0.17
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.17
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 0.25
rrl 1476089 n.2432T>C non_coding_transcript_exon_variant 0.24
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.3
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.3
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.26
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.3
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 0.21
rrl 1476299 n.2642C>T non_coding_transcript_exon_variant 0.2
rrl 1476580 n.2923G>A non_coding_transcript_exon_variant 0.3
rrl 1476595 n.2938C>T non_coding_transcript_exon_variant 0.19
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.28
rrl 1476602 n.2945G>A non_coding_transcript_exon_variant 0.19
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.3
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.26
rrl 1476726 n.3069A>G non_coding_transcript_exon_variant 0.15
rrl 1476732 n.3075T>C non_coding_transcript_exon_variant 0.16
inhA 1673547 c.-655T>C upstream_gene_variant 0.21
inhA 1673955 c.-247G>C upstream_gene_variant 0.16
inhA 1674018 c.-184G>C upstream_gene_variant 0.15
inhA 1674033 c.-169T>C upstream_gene_variant 0.17
inhA 1674840 c.639C>T synonymous_variant 0.18
inhA 1674846 p.Ile215Met missense_variant 0.16
inhA 1674870 c.669T>C synonymous_variant 0.26
inhA 1674903 c.702T>C synonymous_variant 0.2
inhA 1674904 p.Ala235Pro missense_variant 0.19
rpsA 1833554 p.Thr5Ala missense_variant 0.16
rpsA 1833589 c.48A>T synonymous_variant 0.26
rpsA 1833595 c.54T>C synonymous_variant 0.18
rpsA 1833604 c.63C>T synonymous_variant 0.17
rpsA 1833610 c.69C>A synonymous_variant 0.19
rpsA 1833661 c.120A>G synonymous_variant 0.2
rpsA 1833664 c.123C>A synonymous_variant 0.2
rpsA 1833667 c.126C>G synonymous_variant 0.2
rpsA 1833694 c.153G>T synonymous_variant 0.2
rpsA 1833703 c.162C>T synonymous_variant 0.16
rpsA 1833718 c.177C>T synonymous_variant 0.17
rpsA 1833724 c.183C>G synonymous_variant 0.36
rpsA 1833727 c.186G>C synonymous_variant 0.34
rpsA 1833742 c.201A>G synonymous_variant 0.19
rpsA 1833745 c.204G>C synonymous_variant 0.35
rpsA 1833754 c.213G>A synonymous_variant 0.18
rpsA 1833760 c.219C>T synonymous_variant 0.16
rpsA 1833782 p.Ser81Thr missense_variant 0.16
rpsA 1833787 c.246C>G synonymous_variant 0.16
rpsA 1833802 c.261A>G synonymous_variant 0.33
rpsA 1833841 c.300C>G synonymous_variant 0.32
rpsA 1833847 c.306C>G synonymous_variant 0.33
rpsA 1833850 c.309C>G synonymous_variant 0.23
rpsA 1833856 c.315A>G synonymous_variant 0.34
rpsA 1833874 c.333T>C synonymous_variant 0.35
rpsA 1833892 c.351G>A synonymous_variant 0.19
rpsA 1833904 c.363G>A synonymous_variant 0.23
rpsA 1833928 c.387G>C synonymous_variant 0.37
rpsA 1833934 c.393C>T synonymous_variant 0.25
rpsA 1833949 c.408T>C synonymous_variant 0.36
rpsA 1833970 c.429G>C synonymous_variant 0.24
rpsA 1833979 c.438T>C synonymous_variant 0.34
rpsA 1834000 c.459G>C synonymous_variant 0.32
rpsA 1834015 c.474G>C synonymous_variant 0.17
rpsA 1834024 c.483G>A synonymous_variant 0.19
rpsA 1834030 c.489C>G synonymous_variant 0.29
rpsA 1834051 c.510G>A synonymous_variant 0.3
rpsA 1834177 c.636A>C synonymous_variant 1.0
rpsA 1834249 c.708T>C synonymous_variant 0.22
rpsA 1834261 c.720A>G synonymous_variant 0.19
rpsA 1834306 c.765T>C synonymous_variant 0.23
rpsA 1834348 c.807T>C synonymous_variant 0.31
rpsA 1834366 c.825A>G synonymous_variant 0.35
rpsA 1834375 c.834G>A synonymous_variant 0.18
rpsA 1834396 c.855G>C synonymous_variant 0.35
rpsA 1834411 c.870T>C synonymous_variant 0.34
rpsA 1834417 c.876G>C synonymous_variant 0.32
rpsA 1834423 c.882G>C synonymous_variant 0.2
rpsA 1834451 c.910T>C synonymous_variant 0.24
rpsA 1834456 c.915T>G synonymous_variant 0.23
rpsA 1834468 c.927A>G synonymous_variant 0.23
rpsA 1834489 c.948T>C synonymous_variant 0.23
rpsA 1834495 c.954G>A synonymous_variant 0.24
rpsA 1834528 c.987T>C synonymous_variant 0.31
rpsA 1834546 c.1005T>C synonymous_variant 0.32
rpsA 1834609 c.1068T>C synonymous_variant 0.27
rpsA 1834615 c.1074C>T synonymous_variant 0.27
rpsA 1834618 c.1077G>C synonymous_variant 0.19
rpsA 1834633 c.1092A>G synonymous_variant 0.25
rpsA 1834639 c.1098T>C synonymous_variant 0.26
rpsA 1834690 c.1149T>C synonymous_variant 0.25
tlyA 1917972 c.33A>G synonymous_variant 1.0
tlyA 1917975 c.36C>G synonymous_variant 0.17
tlyA 1917981 c.42G>C synonymous_variant 0.17
tlyA 1917987 c.48G>C synonymous_variant 0.18
tlyA 1917996 c.57A>C synonymous_variant 0.2
tlyA 1918002 p.Gln21His missense_variant 0.16
tlyA 1918008 c.69C>T synonymous_variant 0.15
ndh 2101939 c.1104A>C synonymous_variant 0.19
ndh 2101960 c.1083A>G synonymous_variant 0.17
ndh 2101980 p.Asn355Asp missense_variant 0.23
ndh 2101987 c.1056C>G synonymous_variant 0.19
ndh 2101990 c.1053G>C synonymous_variant 0.25
ndh 2101999 c.1044G>A synonymous_variant 0.26
ndh 2102020 c.1023A>G synonymous_variant 0.23
ndh 2102023 c.1020G>C synonymous_variant 0.2
ndh 2102026 c.1017G>T synonymous_variant 0.18
katG 2154724 p.Arg463Leu missense_variant 1.0
katG 2155649 p.Tyr155His missense_variant 0.15
PPE35 2167926 p.Leu896Ser missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2517941 c.-174C>G upstream_gene_variant 0.16
kasA 2518283 p.Ala57Pro missense_variant 0.18
kasA 2518297 c.183C>T synonymous_variant 0.17
kasA 2518312 c.198T>C synonymous_variant 0.15
kasA 2518519 c.405G>C synonymous_variant 0.19
kasA 2518534 c.420G>C synonymous_variant 0.18
kasA 2518561 c.447T>C synonymous_variant 0.21
kasA 2518567 c.453G>T synonymous_variant 0.18
kasA 2518574 p.Ile154Val missense_variant 0.16
kasA 2518588 c.474T>C synonymous_variant 0.18
kasA 2518591 c.477G>C synonymous_variant 0.17
kasA 2518642 c.528A>G synonymous_variant 0.23
kasA 2518645 c.531G>C synonymous_variant 0.17
kasA 2518648 c.534C>T synonymous_variant 0.15
kasA 2518672 c.558G>C synonymous_variant 0.32
kasA 2518681 c.567C>T synonymous_variant 0.19
kasA 2518684 c.570C>A synonymous_variant 0.22
kasA 2518711 c.597A>G synonymous_variant 0.36
kasA 2518717 c.603C>G synonymous_variant 0.21
kasA 2518735 c.621C>A synonymous_variant 0.16
kasA 2518747 c.633C>G synonymous_variant 0.32
kasA 2518756 c.642G>C synonymous_variant 0.18
kasA 2518783 c.669T>C synonymous_variant 0.31
kasA 2518789 c.675G>T synonymous_variant 0.2
kasA 2518795 c.681C>G synonymous_variant 0.26
kasA 2518798 c.684G>C synonymous_variant 0.19
kasA 2518816 c.702C>T synonymous_variant 0.2
kasA 2518822 c.708C>T synonymous_variant 0.16
kasA 2518825 c.711T>C synonymous_variant 0.22
kasA 2518855 c.741C>G synonymous_variant 0.16
kasA 2518864 c.750G>C synonymous_variant 0.23
kasA 2518885 c.771T>C synonymous_variant 0.27
kasA 2518894 c.780G>A synonymous_variant 0.18
kasA 2518903 c.789C>T synonymous_variant 0.18
kasA 2518906 c.792A>G synonymous_variant 0.29
kasA 2518910 c.796C>T synonymous_variant 0.22
kasA 2518939 c.825T>C synonymous_variant 0.21
kasA 2518942 c.828T>C synonymous_variant 0.21
ahpC 2726348 c.156T>C synonymous_variant 0.21
ahpC 2726354 c.162G>C synonymous_variant 0.2
ahpC 2726357 c.165A>G synonymous_variant 0.2
ahpC 2726366 c.174G>C synonymous_variant 0.24
ahpC 2726378 c.186T>G synonymous_variant 0.19
ahpC 2726393 c.201G>C synonymous_variant 0.21
ahpC 2726397 p.Ser69Gly missense_variant 0.19
ahpC 2726408 c.216T>C synonymous_variant 0.19
ahpC 2726430 p.Ala80Thr missense_variant 0.17
folC 2746657 c.942T>C synonymous_variant 0.18
folC 2746663 c.936T>C synonymous_variant 0.18
folC 2747263 c.336C>A synonymous_variant 0.18
pepQ 2859468 c.951G>T synonymous_variant 0.25
pepQ 2859489 p.Val310Ala missense_variant 0.25
pepQ 2859510 c.909T>C synonymous_variant 0.23
pepQ 2859528 c.891T>C synonymous_variant 0.21
pepQ 2859540 c.879A>T synonymous_variant 0.18
Rv2752c 3064596 c.1596G>C synonymous_variant 0.18
Rv2752c 3064602 c.1590T>G synonymous_variant 0.17
Rv2752c 3065556 c.636G>A synonymous_variant 0.19
Rv2752c 3065580 c.612G>C synonymous_variant 0.22
Rv2752c 3065583 c.609G>C synonymous_variant 0.18
Rv2752c 3065595 p.Leu199Phe missense_variant 0.2
Rv2752c 3065612 p.Thr194Ala missense_variant 0.16
Rv2752c 3065634 c.558G>C synonymous_variant 0.16
Rv2752c 3065640 c.552T>C synonymous_variant 0.17
Rv2752c 3065947 p.Gly82Ala missense_variant 0.18
thyX 3067280 c.666G>C synonymous_variant 0.17
thyX 3067284 p.Ala221Asp missense_variant 0.17
thyX 3067295 c.651C>T synonymous_variant 0.17
thyX 3067316 c.630A>G synonymous_variant 0.27
thyX 3067325 c.621A>G synonymous_variant 0.28
thyX 3067373 c.573C>G synonymous_variant 0.22
thyX 3067850 c.96A>G synonymous_variant 0.15
thyX 3067874 c.72C>G synonymous_variant 0.27
thyX 3067886 c.60A>G synonymous_variant 0.23
thyX 3067889 c.57C>G synonymous_variant 0.23
thyX 3067898 p.Asp16Glu missense_variant 0.21
thyA 3073932 c.540C>T synonymous_variant 0.24
thyA 3073977 c.495A>G synonymous_variant 0.22
thyA 3073989 c.483T>C synonymous_variant 0.25
thyA 3074004 c.468T>C synonymous_variant 0.16
thyA 3074031 c.441T>C synonymous_variant 0.19
thyA 3074037 c.435C>G synonymous_variant 0.18
thyA 3074053 p.Arg140Gln missense_variant 0.18
thyA 3074056 p.Glu139Pro missense_variant 0.18
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
Rv3236c 3612813 p.Thr102Ala missense_variant 0.99
fbiB 3642749 c.1215T>C synonymous_variant 0.18
rpoA 3877557 c.951C>G synonymous_variant 0.16
rpoA 3877587 c.921A>G synonymous_variant 0.28
rpoA 3877613 p.Ile299Val missense_variant 0.26
rpoA 3877668 c.840A>G synonymous_variant 0.21
rpoA 3877680 c.828G>C synonymous_variant 0.16
rpoA 3877692 c.816G>C synonymous_variant 0.19
rpoA 3877704 c.804G>C synonymous_variant 0.15
rpoA 3877737 c.771G>C synonymous_variant 0.21
rpoA 3877755 c.753C>A synonymous_variant 0.17
rpoA 3877764 c.744C>G synonymous_variant 0.34
rpoA 3877770 c.738A>G synonymous_variant 0.35
rpoA 3877776 c.732T>C synonymous_variant 0.36
rpoA 3877782 c.726T>C synonymous_variant 0.36
rpoA 3877830 c.678C>T synonymous_variant 0.21
rpoA 3877836 c.672A>G synonymous_variant 0.2
rpoA 3877839 c.669G>C synonymous_variant 0.29
rpoA 3877848 c.660C>T synonymous_variant 0.21
rpoA 3877875 c.633T>G synonymous_variant 0.25
rpoA 3877896 c.612G>C synonymous_variant 0.26
rpoA 3877900 p.Ser203Thr missense_variant 0.26
rpoA 3877905 c.603A>G synonymous_variant 0.31
rpoA 3877909 p.Asn200Ser missense_variant 0.35
rpoA 3877920 c.588G>C synonymous_variant 0.19
rpoA 3877929 c.579C>T synonymous_variant 0.15
rpoA 3877986 c.522G>C synonymous_variant 0.35
rpoA 3877989 c.519A>G synonymous_variant 0.35
rpoA 3877995 c.513G>A synonymous_variant 0.22
rpoA 3878001 c.507A>G synonymous_variant 0.32
rpoA 3878022 c.486T>C synonymous_variant 0.25
rpoA 3878025 c.483C>T synonymous_variant 0.24
rpoA 3878028 c.480G>C synonymous_variant 0.25
rpoA 3878031 c.477T>C synonymous_variant 0.25
rpoA 3878043 c.465G>C synonymous_variant 0.21
rpoA 3878049 c.459G>C synonymous_variant 0.17
rpoA 3878061 c.447G>C synonymous_variant 0.23
rpoA 3878106 c.402G>C synonymous_variant 0.25
rpoA 3878118 c.390T>C synonymous_variant 0.25
rpoA 3878157 c.351C>G synonymous_variant 0.27
rpoA 3878163 c.345C>T synonymous_variant 0.26
rpoA 3878172 c.336G>C synonymous_variant 0.17
rpoA 3878193 c.315T>C synonymous_variant 0.25
rpoA 3878202 c.306G>C synonymous_variant 0.21
rpoA 3878211 c.297G>A synonymous_variant 0.21
rpoA 3878217 c.291A>G synonymous_variant 0.31
rpoA 3878247 c.261G>C synonymous_variant 0.21
rpoA 3878256 c.252G>C synonymous_variant 0.22
rpoA 3878262 c.246C>T synonymous_variant 0.2
rpoA 3878271 c.237T>C synonymous_variant 0.2
rpoA 3878283 p.Glu75Asp missense_variant 0.17
rpoA 3878295 c.213A>G synonymous_variant 0.2
rpoA 3878298 c.210A>G synonymous_variant 0.22
rpoA 3878331 c.177A>G synonymous_variant 0.18
rpoA 3878334 c.174T>C synonymous_variant 0.19
rpoA 3878337 c.171T>C synonymous_variant 0.2
rpoA 3878406 c.102G>T synonymous_variant 0.21
rpoA 3878415 c.93C>T synonymous_variant 0.16
rpoA 3878421 c.87A>T synonymous_variant 0.19
rpoA 3878442 c.66G>C synonymous_variant 0.27
rpoA 3878454 c.54A>G synonymous_variant 0.25
rpoA 3878472 p.Asp12Glu missense_variant 0.26
rpoA 3878496 c.12A>T synonymous_variant 0.22
ddn 3986648 c.-196C>G upstream_gene_variant 0.15
clpC1 4038278 c.2427T>C synonymous_variant 0.22
clpC1 4038314 c.2391T>G synonymous_variant 0.19
clpC1 4038335 c.2370C>T synonymous_variant 0.18
clpC1 4038344 c.2361G>A synonymous_variant 0.18
clpC1 4038350 c.2355C>G synonymous_variant 0.3
clpC1 4038356 c.2349T>C synonymous_variant 0.29
clpC1 4038359 c.2346A>G synonymous_variant 0.3
clpC1 4038368 c.2337T>C synonymous_variant 0.3
clpC1 4038383 c.2322G>A synonymous_variant 0.17
clpC1 4038388 c.2317T>C synonymous_variant 0.22
clpC1 4038392 c.2313C>T synonymous_variant 0.18
clpC1 4038398 c.2307G>T synonymous_variant 0.23
clpC1 4038403 c.2302T>C synonymous_variant 0.22
clpC1 4038407 c.2298G>C synonymous_variant 0.18
clpC1 4038419 c.2286T>C synonymous_variant 0.17
clpC1 4038436 p.Ala757Ser missense_variant 0.17
clpC1 4038445 p.Ala754Thr missense_variant 0.16
clpC1 4038446 c.2259T>C synonymous_variant 0.16
clpC1 4038456 p.Val750Glu missense_variant 0.15
clpC1 4038519 p.Arg729Gln missense_variant 0.27
clpC1 4038530 p.Glu725Asp missense_variant 0.28
clpC1 4038536 c.2169C>T synonymous_variant 0.26
clpC1 4038596 c.2109A>G synonymous_variant 0.22
clpC1 4038713 c.1992T>C synonymous_variant 0.17
clpC1 4038790 c.1915C>T synonymous_variant 0.28
clpC1 4038800 c.1905C>T synonymous_variant 0.16
clpC1 4038812 c.1893T>C synonymous_variant 0.3
clpC1 4038878 c.1827A>G synonymous_variant 0.27
clpC1 4038890 c.1815G>A synonymous_variant 0.17
clpC1 4038908 c.1797C>G synonymous_variant 0.2
clpC1 4038914 c.1791G>C synonymous_variant 0.19
clpC1 4039085 c.1620A>G synonymous_variant 0.18
clpC1 4039097 c.1608G>C synonymous_variant 0.2
clpC1 4039103 c.1602T>C synonymous_variant 0.22
clpC1 4039106 c.1599G>C synonymous_variant 0.21
clpC1 4039112 c.1593C>G synonymous_variant 0.21
clpC1 4039121 c.1584T>C synonymous_variant 0.25
clpC1 4039133 c.1572C>G synonymous_variant 0.26
clpC1 4039142 c.1563A>G synonymous_variant 0.24
clpC1 4039145 c.1560G>C synonymous_variant 0.25
clpC1 4039169 p.Glu512Asp missense_variant 0.19
clpC1 4039172 c.1533A>G synonymous_variant 0.29
clpC1 4039183 c.1522T>C synonymous_variant 0.31
clpC1 4039187 c.1518G>C synonymous_variant 0.18
clpC1 4039226 c.1479T>C synonymous_variant 0.24
clpC1 4039274 c.1431G>C synonymous_variant 0.32
clpC1 4039286 c.1419T>C synonymous_variant 0.37
clpC1 4039292 c.1413C>T synonymous_variant 0.37
clpC1 4039295 c.1410A>G synonymous_variant 0.25
clpC1 4039319 c.1386T>C synonymous_variant 0.38
clpC1 4039322 c.1383T>C synonymous_variant 0.29
clpC1 4039337 c.1368A>C synonymous_variant 0.26
clpC1 4039352 c.1353C>T synonymous_variant 0.23
clpC1 4039391 c.1314T>G synonymous_variant 0.24
clpC1 4039409 c.1296T>C synonymous_variant 0.23
clpC1 4039412 c.1293T>G synonymous_variant 0.22
clpC1 4039430 c.1275T>C synonymous_variant 0.2
clpC1 4039442 c.1263A>G synonymous_variant 0.17
clpC1 4039463 c.1242C>G synonymous_variant 0.23
clpC1 4039466 c.1239T>C synonymous_variant 0.21
clpC1 4039469 c.1236T>C synonymous_variant 0.21
clpC1 4039481 c.1224T>C synonymous_variant 0.33
clpC1 4039484 c.1221T>C synonymous_variant 0.23
clpC1 4039517 c.1188C>G synonymous_variant 0.22
clpC1 4039622 c.1083C>G synonymous_variant 0.17
clpC1 4039661 c.1044T>C synonymous_variant 0.32
clpC1 4039673 c.1032G>C synonymous_variant 0.2
clpC1 4039694 c.1011G>C synonymous_variant 0.3
clpC1 4039715 c.990G>A synonymous_variant 0.19
clpC1 4039724 c.981A>G synonymous_variant 0.27
clpC1 4039727 c.978C>T synonymous_variant 0.16
clpC1 4039748 c.957G>C synonymous_variant 0.21
clpC1 4039751 c.954A>G synonymous_variant 0.24
clpC1 4039760 c.945T>C synonymous_variant 0.19
clpC1 4039766 c.939T>C synonymous_variant 0.2
clpC1 4039769 c.936C>G synonymous_variant 0.2
clpC1 4039778 c.927A>G synonymous_variant 0.22
clpC1 4039781 c.924G>C synonymous_variant 0.21
clpC1 4039790 c.915C>G synonymous_variant 0.23
clpC1 4039796 c.909C>T synonymous_variant 0.24
clpC1 4039817 c.888A>T synonymous_variant 0.25
clpC1 4039820 c.885T>C synonymous_variant 0.3
clpC1 4039826 c.879C>G synonymous_variant 0.32
clpC1 4039831 c.874T>C synonymous_variant 0.34
clpC1 4039850 c.855T>C synonymous_variant 0.36
clpC1 4039865 c.840T>C synonymous_variant 0.36
clpC1 4039898 c.807C>G synonymous_variant 0.2
clpC1 4039931 c.774T>C synonymous_variant 0.25
clpC1 4039946 c.759A>G synonymous_variant 0.2
clpC1 4039952 c.753T>C synonymous_variant 0.29
clpC1 4039958 c.747G>C synonymous_variant 0.29
clpC1 4039991 c.714G>C synonymous_variant 0.25
clpC1 4039996 p.Glu237Gln missense_variant 0.27
clpC1 4040015 c.690G>C synonymous_variant 0.25
clpC1 4040018 c.687G>C synonymous_variant 0.23
clpC1 4040021 c.684A>C synonymous_variant 0.32
clpC1 4040033 c.672G>C synonymous_variant 0.29
clpC1 4040036 c.669C>G synonymous_variant 0.17
clpC1 4040342 c.363C>G synonymous_variant 0.16
clpC1 4040471 c.234T>C synonymous_variant 0.15
clpC1 4040551 c.154T>C synonymous_variant 0.2
clpC1 4040561 c.144A>G synonymous_variant 0.19
embC 4240475 p.Ala205Ser missense_variant 0.15
embC 4240486 c.624G>A synonymous_variant 0.24
embC 4240489 c.627A>G synonymous_variant 0.23
embC 4240495 c.633T>C synonymous_variant 0.23
embC 4240512 p.Ser217Thr missense_variant 0.2
embC 4240516 c.654G>C synonymous_variant 0.2
embC 4240519 c.657T>C synonymous_variant 0.2
embC 4240717 c.855T>C synonymous_variant 0.21
embC 4240726 c.864G>C synonymous_variant 0.21
embC 4240741 c.879C>T synonymous_variant 0.21
embC 4240783 c.921G>C synonymous_variant 0.22
embC 4240795 c.933C>G synonymous_variant 0.16
embC 4240859 p.Leu333Met missense_variant 0.18
embC 4240867 c.1005T>G synonymous_variant 0.18
embC 4240870 c.1008T>C synonymous_variant 0.18
embC 4240879 c.1017G>C synonymous_variant 0.17
embC 4241017 c.1155T>C synonymous_variant 0.16
embC 4241023 c.1161T>G synonymous_variant 0.16
embC 4241050 c.1188T>G synonymous_variant 0.17
embC 4241095 c.1233C>T synonymous_variant 0.22
embC 4241107 c.1245G>C synonymous_variant 0.22
embC 4241140 c.1278A>G synonymous_variant 0.25
embC 4241153 p.Ile431Leu missense_variant 0.22
embC 4241161 c.1299C>G synonymous_variant 0.26
embC 4241162 c.1300T>C synonymous_variant 0.26
embC 4241167 c.1305C>G synonymous_variant 0.2
embC 4241185 c.1323G>C synonymous_variant 0.19
embC 4242139 c.2277G>C synonymous_variant 0.15
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embC 4242791 p.Ala977Ser missense_variant 0.16
embA 4243460 c.228C>T synonymous_variant 0.97
embA 4244823 p.Val531Met missense_variant 0.16
embA 4244856 p.Ala542Pro missense_variant 0.2
embA 4244885 c.1653A>G synonymous_variant 0.23
embA 4245101 c.1869G>C synonymous_variant 0.21
embA 4245137 c.1905T>C synonymous_variant 0.23
embA 4245149 c.1917C>A synonymous_variant 0.19
embA 4245153 p.Ile641Val missense_variant 0.17
embA 4245174 p.Ser648Thr missense_variant 0.18
embA 4245182 c.1950T>C synonymous_variant 0.24
embA 4245186 p.Thr652Ala missense_variant 0.23
embA 4245200 c.1968C>G synonymous_variant 0.17
embA 4245215 c.1983A>C synonymous_variant 0.17
embB 4245620 c.-894T>C upstream_gene_variant 0.22
embB 4245623 c.-891G>A upstream_gene_variant 0.21
embB 4245662 c.-852G>C upstream_gene_variant 0.23
embB 4245674 c.-840A>T upstream_gene_variant 0.26
embB 4245677 c.-837G>C upstream_gene_variant 0.24
embB 4245683 c.-831C>T upstream_gene_variant 0.26
embA 4245693 p.Ile821Val missense_variant 0.25
embB 4245714 c.-800C>T upstream_gene_variant 0.21
embB 4245725 c.-789A>G upstream_gene_variant 0.16
embB 4245726 c.-788T>C upstream_gene_variant 0.18
embB 4246346 c.-168C>G upstream_gene_variant 0.21
embA 4246359 p.Ala1043Ser missense_variant 0.19
embB 4246567 c.54G>T synonymous_variant 1.0
embB 4247446 c.933C>T synonymous_variant 0.17
embB 4247470 c.957T>C synonymous_variant 0.33
embB 4247494 c.981G>A synonymous_variant 0.2
embB 4247497 c.984T>C synonymous_variant 0.33
embB 4247500 c.987C>G synonymous_variant 0.34
embB 4247512 c.999T>C synonymous_variant 0.3
embB 4247554 c.1041T>C synonymous_variant 0.25
embB 4247590 c.1077A>G synonymous_variant 0.2
embB 4247836 c.1323A>G synonymous_variant 0.18
embB 4247858 c.1345C>T synonymous_variant 0.19
embB 4248007 c.1494C>G synonymous_variant 0.24
embB 4248035 p.Val508Ile missense_variant 0.15
embB 4248055 c.1542G>C synonymous_variant 0.23
embB 4248064 c.1551G>C synonymous_variant 0.23
embB 4248070 c.1557T>C synonymous_variant 0.26
embB 4248130 c.1617G>C synonymous_variant 0.27
embB 4248142 c.1629T>C synonymous_variant 0.26
embB 4248143 c.1630T>C synonymous_variant 0.2
embB 4248154 c.1641G>T synonymous_variant 0.22
embB 4248157 c.1644A>T synonymous_variant 0.22
embB 4248163 c.1650G>A synonymous_variant 0.2
embB 4248169 c.1656C>T synonymous_variant 0.19
embB 4248175 c.1662G>A synonymous_variant 0.19
embB 4248178 c.1665C>T synonymous_variant 0.19
embB 4248206 p.Ser565Gly missense_variant 0.21
embB 4248217 c.1704C>G synonymous_variant 0.2
embB 4248220 c.1707A>G synonymous_variant 0.21
embB 4248233 c.1720C>T synonymous_variant 0.2
embB 4248277 c.1764G>C synonymous_variant 0.27
embB 4248280 c.1767C>G synonymous_variant 0.28
embB 4248316 c.1803C>G synonymous_variant 0.27
embB 4248319 c.1806A>G synonymous_variant 0.27
embB 4248349 c.1836G>A synonymous_variant 0.16
embB 4248358 c.1845C>G synonymous_variant 0.16
embB 4248379 c.1866G>A synonymous_variant 0.15
embB 4248457 c.1944T>C synonymous_variant 0.17
embB 4248706 c.2193G>C synonymous_variant 0.17
embB 4248731 p.Val740Leu missense_variant 0.17
embB 4249568 p.Ser1019Asn missense_variant 0.18
embB 4249573 c.3060T>C synonymous_variant 0.17
aftB 4267556 c.1281G>C synonymous_variant 0.17
aftB 4267574 c.1263G>C synonymous_variant 0.19
aftB 4267580 c.1257G>A synonymous_variant 0.19
aftB 4267592 c.1245C>G synonymous_variant 0.2
aftB 4267622 p.Ser405Thr missense_variant 0.2
aftB 4267634 p.Arg401His missense_variant 0.19
aftB 4267647 p.Asp397Gly missense_variant 0.79
aftB 4268994 c.-158T>C upstream_gene_variant 0.17
aftB 4269000 c.-164G>A upstream_gene_variant 0.19
aftB 4269006 c.-170T>C upstream_gene_variant 0.2
aftB 4269012 c.-176G>C upstream_gene_variant 0.2
aftB 4269033 c.-197T>C upstream_gene_variant 0.18
aftB 4269195 c.-359C>T upstream_gene_variant 0.17
aftB 4269222 c.-386T>G upstream_gene_variant 0.25
aftB 4269225 c.-389C>T upstream_gene_variant 0.17
aftB 4269231 c.-395C>T upstream_gene_variant 0.16
aftB 4269234 c.-398A>G upstream_gene_variant 0.26
ubiA 4269243 p.His197Gln missense_variant 0.23
aftB 4269248 c.-412C>T upstream_gene_variant 0.22
aftB 4269285 c.-449T>G upstream_gene_variant 0.16
ethA 4326535 c.939G>C synonymous_variant 0.16
ethR 4326556 c.-993A>G upstream_gene_variant 0.15
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0
gid 4407927 p.Glu92Asp missense_variant 1.0