SRR23961558
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR3445504
|
Other
|
lineage4.9;lineage6.1.3
|
None
|
ERR4828872
|
Sensitive
|
lineage4.2;lineage4.9
|
None
|
SRR11349147
|
RR-TB
|
lineage4.3.2.1
|
None
|
SRR18549032
|
HR-TB
|
lineage2.2.1.2;lineage7
|
None
|
SRR3675222
|
Other
|
La1.7
|
None
|
SRR5007204
|
Other
|
lineage4.1.2.1
|
None
|
SRR3675385
|
Other
|
La1.7;lineage4.9
|
None
|
SRR1175127
|
Other
|
lineage2.2.1.2
|
None
|
ERR067681
|
MDR-TB
|
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9
|
None
|
ERR176568
|
HR-TB
|
La3;lineage2.1;lineage4.9
|
None
|
SRR12142339
|
HR-TB
|
lineage2.2.1
|
None
|
ERR3797044
|
Other
|
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9
|
None
|
SRR6046460
|
MDR-TB
|
La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9
|
None
|
ERR3283026
|
HR-TB
|
lineage4.2;lineage4.6.3;lineage4.9.1
|
None
|
SRR18003042
|
Other
|
lineage2.2.1
|
None
|
ERR2693245
|
HR-TB
|
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9
|
None
|
ERR3797017
|
HR-TB
|
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9
|
None
|
SRR6046362
|
MDR-TB
|
La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9
|
None
|
ERR3797028
|
HR-TB
|
M.canetti;lineage4.9
|
None
|
SRR11342642
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR1165628
|
Other
|
La3;lineage4.9
|
None
|
ERR5311103
|
RR-TB
|
La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9
|
None
|
SRR18002963
|
Other
|
lineage2.2.1
|
None
|
SRR3675446
|
RR-TB
|
lineage4.9
|
None
|
ERR4799025
|
Other
|
lineage4.8
|
None
|
ERR2446566
|
Other
|
lineage4.9
|
None
|
SRR6046593
|
Other
|
lineage4.9
|
None
|
SRR6046482
|
Other
|
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3
|
None
|
SRR11662694
|
Other
|
lineage4.9
|
None
|
SRR7898221
|
MDR-TB
|
lineage1.1.2
|
None
|
ERR4816470
|
HR-TB
|
lineage3
|
None
|
ERR4769450
|
Other
|
lineage4.9
|
None
|
ERR3797036
|
HR-TB
|
lineage2.1;lineage4.1.4;lineage4.9
|
None
|
SRR18003047
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6044942
|
HR-TB
|
lineage4.9
|
None
|
ERR4798406
|
MDR-TB
|
La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3
|
None
|
ERR867541
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR2693230
|
HR-TB
|
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9
|
None
|
ERR3290633
|
Other
|
lineage4.2;lineage4.6.3;lineage4.9.1
|
None
|
SRR6046594
|
Sensitive
|
lineage4.9
|
None
|
SRR7236330
|
Other
|
La1.8.1
|
None
|
SRR3675441
|
Other
|
lineage4.9
|
None
|
ERR126597
|
HR-TB
|
lineage4.4.1.2
|
None
|
SRR6046824
|
MDR-TB
|
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9
|
None
|
SRR1172796
|
Sensitive
|
lineage2.2.1.2
|
None
|
SRR6045519
|
MDR-TB
|
M.canetti;lineage4.9
|
None
|
ERR3797046
|
HR-TB
|
lineage4.9
|
None
|
SRR6832249
|
Sensitive
|
lineage2.2.1
|
None
|
SRR1184024
|
RR-TB
|
lineage2.2.1.1
|
None
|
ERR779852
|
Sensitive
|
lineage4.9
|
None
|
SRR5341418
|
Other
|
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7
|
None
|
ERR403298
|
MDR-TB
|
M.canetti;lineage4.2
|
None
|
SRR29097066
|
Sensitive
|
lineage4.9
|
None
|
ERR3797014
|
Other
|
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9
|
None
|
SRR1735598
|
RR-TB
|
lineage4.9
|
None
|
ERR11252612
|
Other
|
La3;lineage4.9
|
None
|
SRR20632814
|
Sensitive
|
lineage4.9
|
None
|
SRR9971122
|
MDR-TB
|
lineage4.8
|
None
|
SRR9971333
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR4769497
|
Other
|
La1;lineage4.9
|
None
|
ERR502889
|
Other
|
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9
|
None
|
ERR9786076
|
Sensitive
|
lineage3
|
None
|
SRR6832787
|
Sensitive
|
lineage2.2.1
|
None
|
SRR6045555
|
Other
|
lineage4.9
|
None
|
SRR9971270
|
RR-TB
|
lineage2.2.1
|
None
|
ERR9786639
|
Sensitive
|
lineage4.8
|
None
|
ERR5311097
|
Sensitive
|
lineage4.2;lineage4.6.3;lineage4.9
|
None
|
ERR133986
|
Other
|
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7
|
None
|
ERR3439432
|
Other
|
M.canetti;lineage4.6.4;lineage4.9
|
None
|
SRR3675505
|
Other
|
La1.7;M.canetti;lineage4.9
|
None
|
ERR752229
|
Other
|
lineage4.5
|
None
|
ERR2026698
|
HR-TB
|
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3
|
None
|
SRR18003004
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR3283024
|
Other
|
La1.6;La3;M.canetti;lineage4.6.4;lineage4.9
|
None
|
SRR10315556
|
Sensitive
|
lineage2.2.1
|
None
|
SRR11342649
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR3675520
|
Other
|
La1.7.X-unk4;lineage4.9
|
None
|
SRR11662696
|
MDR-TB
|
La1.6;La3;M.canetti;lineage4.2.2
|
None
|
SRR18002974
|
Other
|
lineage2.2.1
|
None
|
ERR4769554
|
RR-TB
|
lineage4.9
|
None
|
SRR5535933
|
Other
|
lineage4.9
|
None
|
SRR3675501
|
Other
|
La1.7;lineage4.9
|
None
|
SRR6045053
|
Other
|
lineage4
|
None
|
SRR20969708
|
HR-TB
|
lineage2.2
|
None
|
SRR6046577
|
Other
|
lineage4.6.3;lineage4.9
|
None
|
SRR3675550
|
RR-TB
|
M.canetti;lineage4.2;lineage4.9
|
None
|
SRR11342687
|
RR-TB
|
lineage4.2.2.2
|
None
|
ERR2026697
|
HR-TB
|
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3
|
None
|
SRR5341341
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2693231
|
Other
|
La1.6;La3;lineage4.6.4;lineage4.9
|
None
|
ERR4830353
|
Other
|
La1.7
|
None
|
SRR3675267
|
Other
|
La1.7;lineage4.9
|
None
|
SRR18002984
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR2693254
|
Other
|
La1.6;La3;lineage4.9
|
None
|
SRR3675461
|
RR-TB
|
lineage4.9
|
None
|
ERR11465802
|
Other
|
La1.7;lineage4.3.4.1
|
None
|
ERR5311091
|
Other
|
La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3
|
None
|
ERR294266
|
HR-TB
|
lineage4.2;lineage4.8.1;lineage4.9
|
None
|
ERR2027290
|
Other
|
lineage3.1.2.1;lineage4.9
|
None
|
SRR18003046
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR20969542
|
Other
|
lineage4.4.2
|
None
|
ERR1035162
|
Other
|
M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9
|
None
|
SRR11342698
|
RR-TB
|
lineage4.4.1.1
|
None
|
SRR18002881
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5311077
|
Other
|
La1.8.1
|
None
|
SRR8217918
|
HR-TB
|
lineage4.9
|
None
|
SRR1181091
|
Other
|
lineage2.2.1.1
|
None
|
ERR2026696
|
MDR-TB
|
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3
|
None
|
SRR3675449
|
Other
|
M.canetti;lineage4.9
|
None
|
SRR14801652
|
HR-TB
|
lineage4.3.3
|
None
|
ERR1023236
|
Other
|
lineage6.1.3
|
None
|
SRR3675488
|
Other
|
La1.7;lineage4.9
|
None
|
ERR11465711
|
Other
|
lineage1.2.2.1;lineage4.4.1.1
|
None
|
ERR4769452
|
Other
|
lineage4.9
|
None
|
SRR1183144
|
Other
|
lineage2.2.1
|
None
|
ERR6359082
|
Other
|
lineage4.9
|
None
|
SRR6046485
|
Other
|
lineage4.9
|
None
|
SRR11662690
|
HR-TB
|
lineage4.9
|
None
|
SRR11342664
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR4811493
|
HR-TB
|
lineage4.9
|
None
|
SRR20970016
|
Other
|
lineage2.2
|
None
|
SRR3675390
|
Other
|
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9
|
None
|
SRR5341412
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR6046196
|
Other
|
La1.7;M.canetti;lineage4.9
|
None
|
SRR18003024
|
RR-TB
|
lineage2.2.1
|
None
|
SRR11342673
|
RR-TB
|
lineage4.3.4.2
|
None
|
SRR5431730
|
Other
|
La1.8.1
|
None
|
ERR736835
|
HR-TB
|
La1.7;M.canetti;lineage4.9
|
None
|
SRR6046397
|
Other
|
M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3
|
None
|
SRR12708406
|
HR-TB
|
lineage2.2.1;lineage4.9
|
None
|
SRR6046878
|
Other
|
lineage4.9
|
None
|
ERR867570
|
RR-TB
|
lineage4.9
|
None
|
SRR3675586
|
Other
|
M.canetti;lineage4.6.4;lineage4.9
|
None
|
ERR1034652
|
Other
|
La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2
|
None
|
SRR11342662
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR3675571
|
HR-TB
|
M.canetti;lineage4.2;lineage4.9
|
None
|
SRR3675270
|
Other
|
lineage4.9
|
None
|
SAMN02585910
|
Other
|
lineage2.2.1
|
None
|
SRR19303820
|
RR-TB
|
lineage4.8
|
None
|
ERR5311079
|
Other
|
La1.6;La3;M.canetti;lineage4.2;lineage4.9
|
None
|
ERR2026695
|
MDR-TB
|
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3
|
None
|
SRR6046299
|
Other
|
lineage4.3.1;lineage4.9;lineage6
|
None
|
SRR6046046
|
Other
|
lineage4.9
|
None
|
ERR6866410
|
Sensitive
|
lineage4.9
|
None
|
ERR2513259
|
Other
|
lineage3
|
None
|
SRR20969731
|
Other
|
lineage2.2.1
|
None
|
ERR4820114
|
Sensitive
|
lineage4.8
|
gb
|
ERR4799547
|
HR-TB
|
lineage2.2.1
|
None
|
SRR6046492
|
Other
|
lineage4.9
|
None
|
ERR1035138
|
MDR-TB
|
lineage2.1;lineage4.9
|
None
|
SRR12708407
|
HR-TB
|
lineage4.3.2.1
|
None
|
SRR14782054
|
Other
|
lineage4.9
|
None
|
SRR5818647
|
Other
|
lineage4.3.4.2.1
|
None
|
SRR6046133
|
HR-TB
|
lineage4.9
|
None
|
SRR1169306
|
Other
|
La3;lineage4.9
|
None
|
SRR5341330
|
Other
|
lineage4.9
|
None
|
SRR6045347
|
Other
|
lineage4.9
|
None
|
SRR6045219
|
HR-TB
|
lineage4.9
|
None
|
ERR3283020
|
HR-TB
|
La1.6;La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR6046720
|
HR-TB
|
lineage4.9;lineage9
|
None
|
SRR18003012
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
DRR188519
|
Other
|
lineage4.4.2
|
None
|
ERR4829333
|
Other
|
lineage4
|
None
|
ERR176643
|
Other
|
La3;lineage4.9
|
None
|
ERR158583
|
MDR-TB
|
La3;M.canetti;lineage2;lineage4.2;lineage4.3
|
None
|
SRR14782405
|
HR-TB
|
lineage4.9
|
None
|
SRR1180172
|
Other
|
lineage2.2.1
|
None
|
ERR176751
|
Other
|
lineage4.9
|
None
|
ERR4831117
|
HR-TB
|
lineage4.9;lineage7
|
None
|
SRR26937107
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11342647
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR6045785
|
MDR-TB
|
lineage4.2;lineage4.8.1;lineage4.9
|
None
|
SRR3675234
|
Other
|
La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9
|
None
|
SRR1180147
|
Other
|
lineage2.2.1.1
|
None
|
SRR1183106
|
RR-TB
|
lineage2.2.1.1
|
None
|
ERR867525
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6045233
|
Other
|
M.canetti;lineage4.9
|
None
|
SRR5341456
|
Other
|
lineage4.9
|
None
|
SRR6046026
|
RR-TB
|
lineage4.2;lineage4.9
|
None
|
ERR212033
|
Other
|
lineage4.9
|
None
|
SRR10808730
|
Other
|
lineage4.9
|
None
|
SRR6046295
|
HR-TB
|
lineage4.2;lineage4.9
|
None
|
ERR11465714
|
Other
|
lineage1.2.2.1;lineage4.4.1.1
|
None
|
ERR3283055
|
HR-TB
|
lineage4.9
|
None
|
SRR1167384
|
Other
|
La3;lineage4.9
|
None
|
SRR18003030
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|