Run ID: SRR5431730
Sample name:
Date: 04-04-2023 10:24:50
Number of reads: 3608526
Percentage reads mapped: 74.36
Strain: La1.8.1
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
La1 | M.bovis | None | None | 0.99 |
La1.8 | M.bovis | None | None | 1.0 |
La1.8.1 | M.bovis | None | None | 0.99 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
pncA | 2289073 | p.His57Asp | missense_variant | 1.0 | pyrazinamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5752 | c.513G>A | synonymous_variant | 1.0 |
gyrA | 6406 | c.-896C>T | upstream_gene_variant | 0.99 |
gyrB | 6446 | p.Ala403Ser | missense_variant | 1.0 |
gyrA | 6811 | c.-491C>T | upstream_gene_variant | 0.13 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8285 | c.984C>T | synonymous_variant | 1.0 |
gyrA | 9143 | c.1842T>C | synonymous_variant | 1.0 |
gyrA | 9217 | p.Asp639Ala | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491472 | c.690A>G | synonymous_variant | 0.12 |
fgd1 | 491523 | c.741G>T | synonymous_variant | 0.13 |
fgd1 | 491526 | c.744T>C | synonymous_variant | 0.13 |
fgd1 | 491563 | p.Ser261Cys | missense_variant | 0.16 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 575695 | c.348C>G | synonymous_variant | 0.12 |
mshA | 575705 | c.358T>C | synonymous_variant | 0.17 |
mshA | 575714 | p.Tyr123Asn | missense_variant | 0.16 |
mshA | 575728 | c.381C>T | synonymous_variant | 0.18 |
mshA | 575734 | c.387T>G | synonymous_variant | 0.15 |
mshA | 575737 | c.390T>C | synonymous_variant | 0.14 |
rpoB | 760235 | c.429T>C | synonymous_variant | 0.14 |
rpoB | 760283 | c.477G>C | synonymous_variant | 0.14 |
rpoB | 760298 | c.492G>C | synonymous_variant | 0.13 |
rpoB | 760649 | c.843G>C | synonymous_variant | 0.16 |
rpoB | 760655 | c.849A>G | synonymous_variant | 0.14 |
rpoB | 760658 | c.852G>A | synonymous_variant | 0.13 |
rpoB | 760661 | c.855A>C | synonymous_variant | 0.15 |
rpoB | 760670 | c.864G>C | synonymous_variant | 0.14 |
rpoB | 760674 | c.868T>C | synonymous_variant | 0.15 |
rpoB | 760679 | c.873A>G | synonymous_variant | 0.15 |
rpoB | 760683 | c.877T>C | synonymous_variant | 0.17 |
rpoB | 761015 | c.1209G>C | synonymous_variant | 0.13 |
rpoB | 761021 | c.1215G>C | synonymous_variant | 0.18 |
rpoB | 761027 | c.1221A>G | synonymous_variant | 0.23 |
rpoB | 761036 | c.1230G>C | synonymous_variant | 0.24 |
rpoB | 761037 | c.1231T>C | synonymous_variant | 0.23 |
rpoB | 761051 | c.1245G>C | synonymous_variant | 0.19 |
rpoB | 761189 | c.1383T>G | synonymous_variant | 0.15 |
rpoB | 761201 | c.1395G>A | synonymous_variant | 0.15 |
rpoB | 761204 | c.1398C>T | synonymous_variant | 0.16 |
rpoB | 761207 | c.1401C>T | synonymous_variant | 0.16 |
rpoB | 761222 | c.1416G>C | synonymous_variant | 0.15 |
rpoB | 761240 | c.1434C>T | synonymous_variant | 0.17 |
rpoB | 761282 | c.1476C>G | synonymous_variant | 0.14 |
rpoB | 761286 | c.1480C>T | synonymous_variant | 0.15 |
rpoB | 761948 | c.2142G>C | synonymous_variant | 0.12 |
rpoB | 761954 | c.2148C>G | synonymous_variant | 0.15 |
rpoB | 761969 | c.2163G>A | synonymous_variant | 0.16 |
rpoB | 761972 | c.2166C>G | synonymous_variant | 0.16 |
rpoB | 762006 | c.2200_2202delCGCinsAGG | synonymous_variant | 0.15 |
rpoB | 762212 | c.2406G>C | synonymous_variant | 0.16 |
rpoB | 762236 | c.2430G>C | synonymous_variant | 0.13 |
rpoB | 762254 | c.2448T>G | synonymous_variant | 0.15 |
rpoB | 762266 | c.2460T>C | synonymous_variant | 0.13 |
rpoC | 762995 | c.-375G>T | upstream_gene_variant | 0.14 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 763034 | c.-336C>G | upstream_gene_variant | 0.13 |
rpoC | 763070 | c.-300T>C | upstream_gene_variant | 0.12 |
rpoC | 763076 | c.-294C>G | upstream_gene_variant | 0.15 |
rpoC | 763094 | c.-276G>C | upstream_gene_variant | 0.16 |
rpoC | 763115 | c.-255T>C | upstream_gene_variant | 0.14 |
rpoC | 763127 | c.-243G>C | upstream_gene_variant | 0.18 |
rpoC | 763136 | c.-234C>T | upstream_gene_variant | 0.16 |
rpoC | 763142 | c.-228C>G | upstream_gene_variant | 0.16 |
rpoC | 763148 | c.-222G>C | upstream_gene_variant | 0.17 |
rpoC | 763169 | c.-201A>G | upstream_gene_variant | 0.12 |
rpoC | 763396 | c.27A>G | synonymous_variant | 0.2 |
rpoC | 763408 | c.39T>C | synonymous_variant | 0.23 |
rpoC | 763411 | c.42T>G | synonymous_variant | 0.23 |
rpoC | 763414 | c.45T>G | synonymous_variant | 0.23 |
rpoC | 763430 | c.61A>C | synonymous_variant | 0.21 |
rpoC | 763444 | c.75T>C | synonymous_variant | 0.17 |
rpoC | 763447 | c.78C>T | synonymous_variant | 0.14 |
rpoC | 763456 | c.87A>G | synonymous_variant | 0.14 |
rpoC | 763465 | c.96G>A | synonymous_variant | 0.12 |
rpoC | 763546 | c.177A>G | synonymous_variant | 0.13 |
rpoC | 763594 | c.225C>T | synonymous_variant | 0.19 |
rpoC | 763603 | c.234C>T | synonymous_variant | 0.2 |
rpoC | 763618 | c.249C>T | synonymous_variant | 0.2 |
rpoC | 763660 | c.291T>G | synonymous_variant | 0.12 |
rpoC | 764083 | c.714A>G | synonymous_variant | 0.14 |
rpoC | 764085 | p.Asn239Thr | missense_variant | 0.13 |
rpoC | 764087 | p.Leu240Val | missense_variant | 0.15 |
rpoC | 764098 | c.729A>G | synonymous_variant | 0.19 |
rpoC | 764101 | c.732C>G | synonymous_variant | 0.21 |
rpoC | 764104 | c.735C>G | synonymous_variant | 0.21 |
rpoC | 764140 | c.771C>T | synonymous_variant | 0.15 |
rpoC | 764266 | c.897T>C | synonymous_variant | 0.12 |
rpoC | 764269 | c.900G>C | synonymous_variant | 0.12 |
rpoC | 764287 | c.918C>T | synonymous_variant | 0.14 |
rpoC | 764293 | c.924G>C | synonymous_variant | 0.18 |
rpoC | 764317 | c.948C>G | synonymous_variant | 0.16 |
rpoC | 764320 | c.951C>G | synonymous_variant | 0.18 |
rpoC | 764344 | c.975C>T | synonymous_variant | 0.22 |
rpoC | 764365 | c.996C>T | synonymous_variant | 0.17 |
rpoC | 764764 | c.1395T>C | synonymous_variant | 0.16 |
rpoC | 764791 | c.1422C>G | synonymous_variant | 0.14 |
rpoC | 764803 | c.1434C>G | synonymous_variant | 0.13 |
rpoC | 764815 | c.1446A>G | synonymous_variant | 0.16 |
rpoC | 764824 | c.1455T>C | synonymous_variant | 0.15 |
rpoC | 764827 | c.1458G>C | synonymous_variant | 0.13 |
rpoC | 764858 | c.1489T>C | synonymous_variant | 0.13 |
rpoC | 764863 | c.1494G>C | synonymous_variant | 0.16 |
rpoC | 764869 | c.1500C>G | synonymous_variant | 0.17 |
rpoC | 764875 | c.1506C>T | synonymous_variant | 0.15 |
rpoC | 764878 | c.1509C>G | synonymous_variant | 0.18 |
rpoC | 764887 | c.1518G>C | synonymous_variant | 0.16 |
rpoC | 764888 | c.1519T>C | synonymous_variant | 0.15 |
rpoC | 764911 | c.1542A>G | synonymous_variant | 0.12 |
rpoC | 764912 | p.Met515Leu | missense_variant | 0.12 |
rpoC | 764932 | c.1563C>A | synonymous_variant | 0.13 |
rpoC | 765478 | c.2109T>C | synonymous_variant | 0.16 |
rpoC | 765533 | p.Tyr722His | missense_variant | 0.12 |
rpoC | 765700 | c.2331T>C | synonymous_variant | 0.13 |
rpoC | 765835 | c.2466C>T | synonymous_variant | 0.14 |
rpoC | 765871 | c.2502T>C | synonymous_variant | 0.18 |
rpoC | 765875 | p.Val836Ile | missense_variant | 0.18 |
rpoC | 765886 | c.2517C>G | synonymous_variant | 0.19 |
rpoC | 765904 | c.2535C>G | synonymous_variant | 0.19 |
rpoC | 765908 | c.2539C>T | synonymous_variant | 0.2 |
rpoC | 765967 | c.2598C>T | synonymous_variant | 0.17 |
rpoC | 765973 | c.2604C>T | synonymous_variant | 0.14 |
rpoC | 766363 | c.2994G>C | synonymous_variant | 0.12 |
rpoC | 766484 | p.Val1039Ile | missense_variant | 0.19 |
rpoC | 766996 | c.3627C>T | synonymous_variant | 0.15 |
rpoC | 767002 | c.3633G>C | synonymous_variant | 0.13 |
rpoC | 767041 | c.3672G>C | synonymous_variant | 0.22 |
rpoC | 767044 | c.3675G>C | synonymous_variant | 0.18 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781685 | c.126G>C | synonymous_variant | 0.12 |
fbiC | 1302899 | c.-32A>G | upstream_gene_variant | 1.0 |
fbiC | 1303545 | c.615A>G | synonymous_variant | 0.13 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472075 | n.230A>G | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472108 | n.263C>T | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472431 | n.586G>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472438 | n.593T>C | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472446 | n.601T>A | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472452 | n.607G>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472464 | n.619A>G | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472489 | n.644A>G | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472498 | n.653C>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472683 | n.838_839insTA | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472973 | n.1128A>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473100 | n.1255G>C | non_coding_transcript_exon_variant | 0.21 |
rrs | 1473104 | n.1259C>T | non_coding_transcript_exon_variant | 0.2 |
rrs | 1473109 | n.1264T>G | non_coding_transcript_exon_variant | 0.21 |
rrs | 1473111 | n.1266A>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1473123 | n.1278A>T | non_coding_transcript_exon_variant | 0.29 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.31 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.3 |
rrs | 1473276 | n.1431A>G | non_coding_transcript_exon_variant | 0.24 |
rrs | 1473290 | n.1445C>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1473291 | n.1446_1447insT | non_coding_transcript_exon_variant | 0.24 |
rrs | 1473301 | n.1456T>C | non_coding_transcript_exon_variant | 0.28 |
rrl | 1473717 | n.60G>A | non_coding_transcript_exon_variant | 0.22 |
rrl | 1473746 | n.89T>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1473752 | n.95G>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474151 | n.494C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474174 | n.517A>G | non_coding_transcript_exon_variant | 0.24 |
rrl | 1474181 | n.524C>A | non_coding_transcript_exon_variant | 0.26 |
rrl | 1474552 | n.895C>T | non_coding_transcript_exon_variant | 0.23 |
rrl | 1474632 | n.975G>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474638 | n.981C>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474639 | n.982G>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474715 | n.1061delA | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474753 | n.1096A>G | non_coding_transcript_exon_variant | 0.21 |
rrl | 1474760 | n.1103A>G | non_coding_transcript_exon_variant | 0.21 |
rrl | 1474794 | n.1137C>A | non_coding_transcript_exon_variant | 0.24 |
rrl | 1474812 | n.1155G>A | non_coding_transcript_exon_variant | 0.31 |
rrl | 1474830 | n.1173A>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474831 | n.1174A>T | non_coding_transcript_exon_variant | 0.23 |
rrl | 1475061 | n.1404C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475062 | n.1405A>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475120 | n.1463G>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475429 | n.1772G>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475433 | n.1776A>C | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475452 | n.1795C>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475483 | n.1826C>T | non_coding_transcript_exon_variant | 0.26 |
rrl | 1475505 | n.1848G>A | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475526 | n.1869C>A | non_coding_transcript_exon_variant | 0.23 |
rrl | 1475544 | n.1887A>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475545 | n.1888T>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475916 | n.2259C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475975 | n.2318C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476049 | n.2392C>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476086 | n.2429G>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476088 | n.2431A>C | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476095 | n.2438C>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476103 | n.2446C>A | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476108 | n.2451T>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476110 | n.2453G>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476115 | n.2458T>C | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476131 | n.2474C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476214 | n.2557G>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476215 | n.2558C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476224 | n.2567A>G | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476245 | n.2588C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476246 | n.2589G>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476252 | n.2595T>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476256 | n.2599A>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476262 | n.2605G>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476281 | n.2624T>C | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476529 | n.2872A>T | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476583 | n.2926G>A | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476594 | n.2937C>T | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476597 | n.2940G>A | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476603 | n.2946G>A | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476608 | n.2951C>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476616 | n.2959A>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476619 | n.2962C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476628 | n.2971T>A | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476665 | n.3008T>A | non_coding_transcript_exon_variant | 0.42 |
rrl | 1476674 | n.3017T>C | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476679 | n.3022T>A | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476689 | n.3032A>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476690 | n.3033C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476693 | n.3036G>A | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476695 | n.3038T>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476716 | n.3059A>C | non_coding_transcript_exon_variant | 0.15 |
fabG1 | 1673380 | c.-60C>G | upstream_gene_variant | 0.24 |
inhA | 1674624 | c.423A>C | synonymous_variant | 0.15 |
inhA | 1674627 | c.426T>C | synonymous_variant | 0.14 |
inhA | 1674628 | p.Ser143Gly | missense_variant | 0.14 |
inhA | 1674656 | p.Ser152Thr | missense_variant | 0.15 |
inhA | 1674718 | c.517A>C | synonymous_variant | 0.2 |
inhA | 1674745 | p.Tyr182Val | missense_variant | 0.21 |
inhA | 1674756 | c.555T>G | synonymous_variant | 0.2 |
inhA | 1674765 | c.564C>G | synonymous_variant | 0.18 |
inhA | 1674771 | c.570C>G | synonymous_variant | 0.19 |
inhA | 1674774 | c.573A>C | synonymous_variant | 0.18 |
inhA | 1674780 | c.579T>G | synonymous_variant | 0.16 |
rpsA | 1833667 | c.126C>G | synonymous_variant | 0.12 |
rpsA | 1833724 | c.183C>G | synonymous_variant | 0.14 |
rpsA | 1833727 | c.186G>C | synonymous_variant | 0.15 |
rpsA | 1833734 | p.Ala65Ser | missense_variant | 0.16 |
rpsA | 1833770 | p.Asn77His | missense_variant | 0.23 |
rpsA | 1833778 | c.237C>G | synonymous_variant | 0.17 |
rpsA | 1833781 | c.240T>G | synonymous_variant | 0.17 |
rpsA | 1833793 | c.252C>T | synonymous_variant | 0.16 |
rpsA | 1833802 | c.261A>G | synonymous_variant | 0.15 |
rpsA | 1833811 | c.270G>C | synonymous_variant | 0.2 |
rpsA | 1833814 | c.273C>G | synonymous_variant | 0.19 |
rpsA | 1833820 | c.279G>A | synonymous_variant | 0.14 |
rpsA | 1833928 | c.387G>C | synonymous_variant | 0.16 |
rpsA | 1833949 | c.408T>C | synonymous_variant | 0.16 |
rpsA | 1833979 | c.438T>C | synonymous_variant | 0.18 |
rpsA | 1833988 | c.447C>G | synonymous_variant | 0.2 |
rpsA | 1833991 | c.450C>A | synonymous_variant | 0.18 |
rpsA | 1834015 | c.474G>T | synonymous_variant | 0.17 |
rpsA | 1834018 | c.477C>T | synonymous_variant | 0.17 |
rpsA | 1834030 | c.489C>G | synonymous_variant | 0.17 |
rpsA | 1834051 | c.510G>A | synonymous_variant | 0.18 |
rpsA | 1834099 | c.558C>G | synonymous_variant | 0.14 |
rpsA | 1834222 | c.681T>C | synonymous_variant | 0.14 |
rpsA | 1834225 | c.684C>G | synonymous_variant | 0.14 |
rpsA | 1834231 | c.690T>C | synonymous_variant | 0.13 |
rpsA | 1834249 | c.708T>C | synonymous_variant | 0.15 |
rpsA | 1834348 | c.807T>C | synonymous_variant | 0.21 |
rpsA | 1834361 | c.820T>C | synonymous_variant | 0.22 |
rpsA | 1834366 | c.825A>G | synonymous_variant | 0.22 |
rpsA | 1834375 | c.834G>C | synonymous_variant | 0.2 |
rpsA | 1834378 | c.837T>C | synonymous_variant | 0.17 |
rpsA | 1834396 | c.855G>C | synonymous_variant | 0.15 |
rpsA | 1834411 | c.870T>C | synonymous_variant | 0.14 |
rpsA | 1834423 | c.882G>T | synonymous_variant | 0.13 |
rpsA | 1834456 | c.915T>G | synonymous_variant | 0.15 |
rpsA | 1834468 | c.927A>G | synonymous_variant | 0.17 |
rpsA | 1834489 | c.948T>C | synonymous_variant | 0.16 |
rpsA | 1834573 | c.1032G>C | synonymous_variant | 0.12 |
rpsA | 1834603 | p.Glu354Asp | missense_variant | 0.13 |
rpsA | 1834639 | c.1098T>C | synonymous_variant | 0.13 |
rpsA | 1834690 | c.1149T>C | synonymous_variant | 0.14 |
rpsA | 1834859 | p.Ala440Thr | missense_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2103173 | c.-132delG | upstream_gene_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
katG | 2155503 | c.609C>T | synonymous_variant | 1.0 |
katG | 2156025 | c.87C>A | synonymous_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2168011 | p.Ser868Arg | missense_variant | 0.98 |
PPE35 | 2168319 | p.Thr765Ile | missense_variant | 1.0 |
PPE35 | 2168814 | c.1798dupA | frameshift_variant | 1.0 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.33 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.32 |
Rv1979c | 2222308 | p.Asp286Gly | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 0.98 |
kasA | 2517917 | c.-198G>A | upstream_gene_variant | 0.93 |
kasA | 2517926 | c.-189G>A | upstream_gene_variant | 0.19 |
kasA | 2517941 | c.-174C>G | upstream_gene_variant | 0.12 |
kasA | 2518132 | c.18C>T | synonymous_variant | 1.0 |
kasA | 2518672 | c.558G>C | synonymous_variant | 0.17 |
kasA | 2518678 | c.564C>T | synonymous_variant | 0.19 |
kasA | 2518684 | c.570C>G | synonymous_variant | 0.14 |
kasA | 2518688 | p.Val192Phe | missense_variant | 0.13 |
kasA | 2518693 | c.579C>G | synonymous_variant | 0.13 |
kasA | 2518702 | c.588C>T | synonymous_variant | 0.13 |
eis | 2715125 | p.Thr70Ala | missense_variant | 1.0 |
ald | 3086728 | c.-92C>T | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087084 | c.266delA | frameshift_variant | 1.0 |
Rv3083 | 3448783 | p.Val94Ile | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474427 | p.Val141Ile | missense_variant | 1.0 |
fprA | 3475159 | p.Asn385Asp | missense_variant | 1.0 |
fbiB | 3641590 | p.Gly19Glu | missense_variant | 0.97 |
rpoA | 3877587 | c.921A>G | synonymous_variant | 0.13 |
rpoA | 3877596 | c.912G>C | synonymous_variant | 0.16 |
rpoA | 3877613 | p.Ile299Val | missense_variant | 0.21 |
rpoA | 3877617 | c.891G>C | synonymous_variant | 0.22 |
rpoA | 3877647 | c.861C>T | synonymous_variant | 0.2 |
rpoA | 3877656 | c.852T>C | synonymous_variant | 0.16 |
rpoA | 3877770 | c.738A>G | synonymous_variant | 0.12 |
rpoA | 3878217 | c.291A>G | synonymous_variant | 0.13 |
rpoA | 3878247 | c.261G>C | synonymous_variant | 0.19 |
rpoA | 3878250 | c.258C>G | synonymous_variant | 0.19 |
rpoA | 3878253 | c.255G>C | synonymous_variant | 0.2 |
rpoA | 3878264 | p.Ser82Gly | missense_variant | 0.17 |
rpoA | 3878271 | c.237T>C | synonymous_variant | 0.17 |
rpoA | 3878283 | p.Glu75Asp | missense_variant | 0.13 |
rpoA | 3878364 | c.144A>C | synonymous_variant | 0.16 |
rpoA | 3878370 | c.138T>C | synonymous_variant | 0.2 |
rpoA | 3878394 | c.114G>T | synonymous_variant | 0.21 |
rpoA | 3878400 | c.108T>C | synonymous_variant | 0.2 |
rpoA | 3878630 | c.-124delC | upstream_gene_variant | 1.0 |
clpC1 | 4038368 | c.2337T>C | synonymous_variant | 0.14 |
clpC1 | 4038403 | c.2302T>C | synonymous_variant | 1.0 |
clpC1 | 4038596 | c.2109A>G | synonymous_variant | 0.13 |
clpC1 | 4038602 | c.2103G>C | synonymous_variant | 0.12 |
clpC1 | 4038640 | p.Asp689Asn | missense_variant | 0.2 |
clpC1 | 4038647 | c.2058T>G | synonymous_variant | 0.16 |
clpC1 | 4038683 | c.2022T>C | synonymous_variant | 0.13 |
clpC1 | 4038704 | c.2001T>C | synonymous_variant | 0.2 |
clpC1 | 4038710 | c.1995G>C | synonymous_variant | 0.19 |
clpC1 | 4038713 | c.1992T>C | synonymous_variant | 0.15 |
clpC1 | 4038726 | p.Thr660Ser | missense_variant | 0.15 |
clpC1 | 4038749 | c.1956C>T | synonymous_variant | 0.16 |
clpC1 | 4039022 | c.1683A>G | synonymous_variant | 0.13 |
clpC1 | 4039067 | c.1638G>T | synonymous_variant | 0.13 |
clpC1 | 4039085 | c.1620A>G | synonymous_variant | 0.13 |
clpC1 | 4039391 | c.1314T>G | synonymous_variant | 0.12 |
clpC1 | 4039397 | c.1308A>G | synonymous_variant | 0.12 |
clpC1 | 4039748 | c.957G>C | synonymous_variant | 0.17 |
clpC1 | 4039751 | c.954A>G | synonymous_variant | 0.17 |
clpC1 | 4039754 | c.951G>C | synonymous_variant | 0.17 |
clpC1 | 4039769 | c.936C>G | synonymous_variant | 0.12 |
clpC1 | 4039793 | c.912C>G | synonymous_variant | 0.14 |
clpC1 | 4039889 | c.816G>C | synonymous_variant | 0.12 |
clpC1 | 4039898 | c.807C>G | synonymous_variant | 0.17 |
clpC1 | 4039925 | c.780C>T | synonymous_variant | 0.22 |
clpC1 | 4039931 | c.774T>C | synonymous_variant | 0.23 |
clpC1 | 4039934 | c.771G>C | synonymous_variant | 0.24 |
clpC1 | 4039946 | c.759A>T | synonymous_variant | 0.24 |
clpC1 | 4039952 | c.753T>C | synonymous_variant | 0.21 |
clpC1 | 4039958 | c.747G>C | synonymous_variant | 0.22 |
clpC1 | 4040021 | c.684A>C | synonymous_variant | 0.14 |
clpC1 | 4040024 | c.681A>G | synonymous_variant | 0.14 |
clpC1 | 4040027 | c.678C>G | synonymous_variant | 0.15 |
clpC1 | 4040030 | c.675C>G | synonymous_variant | 0.15 |
clpC1 | 4040033 | c.672G>C | synonymous_variant | 0.16 |
clpC1 | 4040057 | c.648C>T | synonymous_variant | 0.19 |
clpC1 | 4040090 | c.615T>C | synonymous_variant | 0.23 |
clpC1 | 4040093 | c.612C>G | synonymous_variant | 0.23 |
clpC1 | 4040144 | c.561G>C | synonymous_variant | 0.12 |
clpC1 | 4040147 | c.558A>G | synonymous_variant | 0.12 |
clpC1 | 4040480 | c.225T>C | synonymous_variant | 0.12 |
clpC1 | 4040522 | c.183T>C | synonymous_variant | 0.12 |
embC | 4240671 | p.Thr270Ile | missense_variant | 1.0 |
embC | 4240765 | c.903C>G | synonymous_variant | 0.15 |
embC | 4240769 | p.Val303Ile | missense_variant | 0.13 |
embC | 4240780 | c.918T>C | synonymous_variant | 0.15 |
embC | 4240783 | c.921G>C | synonymous_variant | 0.15 |
embC | 4240789 | c.927T>C | synonymous_variant | 0.12 |
embC | 4240800 | p.Tyr313Phe | missense_variant | 0.13 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4242970 | c.-263C>T | upstream_gene_variant | 1.0 |
embA | 4244220 | c.988C>T | synonymous_variant | 1.0 |
embB | 4246551 | p.Asn13Ser | missense_variant | 1.0 |
embB | 4246864 | c.351C>T | synonymous_variant | 1.0 |
embB | 4247646 | p.Glu378Ala | missense_variant | 1.0 |
aftB | 4267858 | p.Ile327Val | missense_variant | 1.0 |
aftB | 4269351 | c.-515C>T | upstream_gene_variant | 1.0 |
ubiA | 4269387 | p.Glu149Asp | missense_variant | 1.0 |
aftB | 4269606 | c.-770T>C | upstream_gene_variant | 1.0 |
aftB | 4269750 | c.-914A>G | upstream_gene_variant | 0.12 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |