TB-Profiler result

Run: SRR5431730
Summary

Run ID: SRR5431730

Sample name:

Date: 04-04-2023 10:24:50

Number of reads: 3608526

Percentage reads mapped: 74.36

Strain: La1.8.1

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
La1 M.bovis None None 0.99
La1.8 M.bovis None None 1.0
La1.8.1 M.bovis None None 0.99
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
pncA 2289073 p.His57Asp missense_variant 1.0 pyrazinamide
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5752 c.513G>A synonymous_variant 1.0
gyrA 6406 c.-896C>T upstream_gene_variant 0.99
gyrB 6446 p.Ala403Ser missense_variant 1.0
gyrA 6811 c.-491C>T upstream_gene_variant 0.13
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 8285 c.984C>T synonymous_variant 1.0
gyrA 9143 c.1842T>C synonymous_variant 1.0
gyrA 9217 p.Asp639Ala missense_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491472 c.690A>G synonymous_variant 0.12
fgd1 491523 c.741G>T synonymous_variant 0.13
fgd1 491526 c.744T>C synonymous_variant 0.13
fgd1 491563 p.Ser261Cys missense_variant 0.16
fgd1 491742 c.960T>C synonymous_variant 1.0
mshA 575695 c.348C>G synonymous_variant 0.12
mshA 575705 c.358T>C synonymous_variant 0.17
mshA 575714 p.Tyr123Asn missense_variant 0.16
mshA 575728 c.381C>T synonymous_variant 0.18
mshA 575734 c.387T>G synonymous_variant 0.15
mshA 575737 c.390T>C synonymous_variant 0.14
rpoB 760235 c.429T>C synonymous_variant 0.14
rpoB 760283 c.477G>C synonymous_variant 0.14
rpoB 760298 c.492G>C synonymous_variant 0.13
rpoB 760649 c.843G>C synonymous_variant 0.16
rpoB 760655 c.849A>G synonymous_variant 0.14
rpoB 760658 c.852G>A synonymous_variant 0.13
rpoB 760661 c.855A>C synonymous_variant 0.15
rpoB 760670 c.864G>C synonymous_variant 0.14
rpoB 760674 c.868T>C synonymous_variant 0.15
rpoB 760679 c.873A>G synonymous_variant 0.15
rpoB 760683 c.877T>C synonymous_variant 0.17
rpoB 761015 c.1209G>C synonymous_variant 0.13
rpoB 761021 c.1215G>C synonymous_variant 0.18
rpoB 761027 c.1221A>G synonymous_variant 0.23
rpoB 761036 c.1230G>C synonymous_variant 0.24
rpoB 761037 c.1231T>C synonymous_variant 0.23
rpoB 761051 c.1245G>C synonymous_variant 0.19
rpoB 761189 c.1383T>G synonymous_variant 0.15
rpoB 761201 c.1395G>A synonymous_variant 0.15
rpoB 761204 c.1398C>T synonymous_variant 0.16
rpoB 761207 c.1401C>T synonymous_variant 0.16
rpoB 761222 c.1416G>C synonymous_variant 0.15
rpoB 761240 c.1434C>T synonymous_variant 0.17
rpoB 761282 c.1476C>G synonymous_variant 0.14
rpoB 761286 c.1480C>T synonymous_variant 0.15
rpoB 761948 c.2142G>C synonymous_variant 0.12
rpoB 761954 c.2148C>G synonymous_variant 0.15
rpoB 761969 c.2163G>A synonymous_variant 0.16
rpoB 761972 c.2166C>G synonymous_variant 0.16
rpoB 762006 c.2200_2202delCGCinsAGG synonymous_variant 0.15
rpoB 762212 c.2406G>C synonymous_variant 0.16
rpoB 762236 c.2430G>C synonymous_variant 0.13
rpoB 762254 c.2448T>G synonymous_variant 0.15
rpoB 762266 c.2460T>C synonymous_variant 0.13
rpoC 762995 c.-375G>T upstream_gene_variant 0.14
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoC 763034 c.-336C>G upstream_gene_variant 0.13
rpoC 763070 c.-300T>C upstream_gene_variant 0.12
rpoC 763076 c.-294C>G upstream_gene_variant 0.15
rpoC 763094 c.-276G>C upstream_gene_variant 0.16
rpoC 763115 c.-255T>C upstream_gene_variant 0.14
rpoC 763127 c.-243G>C upstream_gene_variant 0.18
rpoC 763136 c.-234C>T upstream_gene_variant 0.16
rpoC 763142 c.-228C>G upstream_gene_variant 0.16
rpoC 763148 c.-222G>C upstream_gene_variant 0.17
rpoC 763169 c.-201A>G upstream_gene_variant 0.12
rpoC 763396 c.27A>G synonymous_variant 0.2
rpoC 763408 c.39T>C synonymous_variant 0.23
rpoC 763411 c.42T>G synonymous_variant 0.23
rpoC 763414 c.45T>G synonymous_variant 0.23
rpoC 763430 c.61A>C synonymous_variant 0.21
rpoC 763444 c.75T>C synonymous_variant 0.17
rpoC 763447 c.78C>T synonymous_variant 0.14
rpoC 763456 c.87A>G synonymous_variant 0.14
rpoC 763465 c.96G>A synonymous_variant 0.12
rpoC 763546 c.177A>G synonymous_variant 0.13
rpoC 763594 c.225C>T synonymous_variant 0.19
rpoC 763603 c.234C>T synonymous_variant 0.2
rpoC 763618 c.249C>T synonymous_variant 0.2
rpoC 763660 c.291T>G synonymous_variant 0.12
rpoC 764083 c.714A>G synonymous_variant 0.14
rpoC 764085 p.Asn239Thr missense_variant 0.13
rpoC 764087 p.Leu240Val missense_variant 0.15
rpoC 764098 c.729A>G synonymous_variant 0.19
rpoC 764101 c.732C>G synonymous_variant 0.21
rpoC 764104 c.735C>G synonymous_variant 0.21
rpoC 764140 c.771C>T synonymous_variant 0.15
rpoC 764266 c.897T>C synonymous_variant 0.12
rpoC 764269 c.900G>C synonymous_variant 0.12
rpoC 764287 c.918C>T synonymous_variant 0.14
rpoC 764293 c.924G>C synonymous_variant 0.18
rpoC 764317 c.948C>G synonymous_variant 0.16
rpoC 764320 c.951C>G synonymous_variant 0.18
rpoC 764344 c.975C>T synonymous_variant 0.22
rpoC 764365 c.996C>T synonymous_variant 0.17
rpoC 764764 c.1395T>C synonymous_variant 0.16
rpoC 764791 c.1422C>G synonymous_variant 0.14
rpoC 764803 c.1434C>G synonymous_variant 0.13
rpoC 764815 c.1446A>G synonymous_variant 0.16
rpoC 764824 c.1455T>C synonymous_variant 0.15
rpoC 764827 c.1458G>C synonymous_variant 0.13
rpoC 764858 c.1489T>C synonymous_variant 0.13
rpoC 764863 c.1494G>C synonymous_variant 0.16
rpoC 764869 c.1500C>G synonymous_variant 0.17
rpoC 764875 c.1506C>T synonymous_variant 0.15
rpoC 764878 c.1509C>G synonymous_variant 0.18
rpoC 764887 c.1518G>C synonymous_variant 0.16
rpoC 764888 c.1519T>C synonymous_variant 0.15
rpoC 764911 c.1542A>G synonymous_variant 0.12
rpoC 764912 p.Met515Leu missense_variant 0.12
rpoC 764932 c.1563C>A synonymous_variant 0.13
rpoC 765478 c.2109T>C synonymous_variant 0.16
rpoC 765533 p.Tyr722His missense_variant 0.12
rpoC 765700 c.2331T>C synonymous_variant 0.13
rpoC 765835 c.2466C>T synonymous_variant 0.14
rpoC 765871 c.2502T>C synonymous_variant 0.18
rpoC 765875 p.Val836Ile missense_variant 0.18
rpoC 765886 c.2517C>G synonymous_variant 0.19
rpoC 765904 c.2535C>G synonymous_variant 0.19
rpoC 765908 c.2539C>T synonymous_variant 0.2
rpoC 765967 c.2598C>T synonymous_variant 0.17
rpoC 765973 c.2604C>T synonymous_variant 0.14
rpoC 766363 c.2994G>C synonymous_variant 0.12
rpoC 766484 p.Val1039Ile missense_variant 0.19
rpoC 766996 c.3627C>T synonymous_variant 0.15
rpoC 767002 c.3633G>C synonymous_variant 0.13
rpoC 767041 c.3672G>C synonymous_variant 0.22
rpoC 767044 c.3675G>C synonymous_variant 0.18
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781685 c.126G>C synonymous_variant 0.12
fbiC 1302899 c.-32A>G upstream_gene_variant 1.0
fbiC 1303545 c.615A>G synonymous_variant 0.13
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.13
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.17
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.19
rrs 1472431 n.586G>A non_coding_transcript_exon_variant 0.18
rrs 1472438 n.593T>C non_coding_transcript_exon_variant 0.17
rrs 1472446 n.601T>A non_coding_transcript_exon_variant 0.16
rrs 1472452 n.607G>A non_coding_transcript_exon_variant 0.15
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.13
rrs 1472489 n.644A>G non_coding_transcript_exon_variant 0.17
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.18
rrs 1472683 n.838_839insTA non_coding_transcript_exon_variant 0.2
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.15
rrs 1473100 n.1255G>C non_coding_transcript_exon_variant 0.21
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.2
rrs 1473109 n.1264T>G non_coding_transcript_exon_variant 0.21
rrs 1473111 n.1266A>T non_coding_transcript_exon_variant 0.22
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.29
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.31
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.3
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.24
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.18
rrs 1473291 n.1446_1447insT non_coding_transcript_exon_variant 0.24
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.28
rrl 1473717 n.60G>A non_coding_transcript_exon_variant 0.22
rrl 1473746 n.89T>C non_coding_transcript_exon_variant 0.18
rrl 1473752 n.95G>T non_coding_transcript_exon_variant 0.18
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.18
rrl 1474174 n.517A>G non_coding_transcript_exon_variant 0.24
rrl 1474181 n.524C>A non_coding_transcript_exon_variant 0.26
rrl 1474552 n.895C>T non_coding_transcript_exon_variant 0.23
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.14
rrl 1474638 n.981C>A non_coding_transcript_exon_variant 0.12
rrl 1474639 n.982G>C non_coding_transcript_exon_variant 0.12
rrl 1474715 n.1061delA non_coding_transcript_exon_variant 0.17
rrl 1474753 n.1096A>G non_coding_transcript_exon_variant 0.21
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.21
rrl 1474794 n.1137C>A non_coding_transcript_exon_variant 0.24
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.31
rrl 1474830 n.1173A>T non_coding_transcript_exon_variant 0.22
rrl 1474831 n.1174A>T non_coding_transcript_exon_variant 0.23
rrl 1475061 n.1404C>T non_coding_transcript_exon_variant 0.17
rrl 1475062 n.1405A>G non_coding_transcript_exon_variant 0.17
rrl 1475120 n.1463G>T non_coding_transcript_exon_variant 0.2
rrl 1475429 n.1772G>T non_coding_transcript_exon_variant 0.12
rrl 1475433 n.1776A>C non_coding_transcript_exon_variant 0.13
rrl 1475452 n.1795C>A non_coding_transcript_exon_variant 0.18
rrl 1475483 n.1826C>T non_coding_transcript_exon_variant 0.26
rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 0.22
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.23
rrl 1475544 n.1887A>T non_coding_transcript_exon_variant 0.15
rrl 1475545 n.1888T>G non_coding_transcript_exon_variant 0.14
rrl 1475916 n.2259C>T non_coding_transcript_exon_variant 0.18
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.15
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.16
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 0.19
rrl 1476088 n.2431A>C non_coding_transcript_exon_variant 0.19
rrl 1476095 n.2438C>T non_coding_transcript_exon_variant 0.21
rrl 1476103 n.2446C>A non_coding_transcript_exon_variant 0.21
rrl 1476108 n.2451T>G non_coding_transcript_exon_variant 0.22
rrl 1476110 n.2453G>T non_coding_transcript_exon_variant 0.2
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.19
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.13
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.18
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.19
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.23
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.19
rrl 1476246 n.2589G>A non_coding_transcript_exon_variant 0.19
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.17
rrl 1476256 n.2599A>C non_coding_transcript_exon_variant 0.15
rrl 1476262 n.2605G>A non_coding_transcript_exon_variant 0.14
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.19
rrl 1476529 n.2872A>T non_coding_transcript_exon_variant 0.24
rrl 1476583 n.2926G>A non_coding_transcript_exon_variant 0.24
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.23
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 0.23
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.23
rrl 1476603 n.2946G>A non_coding_transcript_exon_variant 0.23
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.25
rrl 1476616 n.2959A>G non_coding_transcript_exon_variant 0.2
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.2
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.21
rrl 1476665 n.3008T>A non_coding_transcript_exon_variant 0.42
rrl 1476674 n.3017T>C non_coding_transcript_exon_variant 0.41
rrl 1476679 n.3022T>A non_coding_transcript_exon_variant 0.35
rrl 1476689 n.3032A>T non_coding_transcript_exon_variant 0.29
rrl 1476690 n.3033C>T non_coding_transcript_exon_variant 0.29
rrl 1476693 n.3036G>A non_coding_transcript_exon_variant 0.26
rrl 1476695 n.3038T>A non_coding_transcript_exon_variant 0.25
rrl 1476716 n.3059A>C non_coding_transcript_exon_variant 0.15
fabG1 1673380 c.-60C>G upstream_gene_variant 0.24
inhA 1674624 c.423A>C synonymous_variant 0.15
inhA 1674627 c.426T>C synonymous_variant 0.14
inhA 1674628 p.Ser143Gly missense_variant 0.14
inhA 1674656 p.Ser152Thr missense_variant 0.15
inhA 1674718 c.517A>C synonymous_variant 0.2
inhA 1674745 p.Tyr182Val missense_variant 0.21
inhA 1674756 c.555T>G synonymous_variant 0.2
inhA 1674765 c.564C>G synonymous_variant 0.18
inhA 1674771 c.570C>G synonymous_variant 0.19
inhA 1674774 c.573A>C synonymous_variant 0.18
inhA 1674780 c.579T>G synonymous_variant 0.16
rpsA 1833667 c.126C>G synonymous_variant 0.12
rpsA 1833724 c.183C>G synonymous_variant 0.14
rpsA 1833727 c.186G>C synonymous_variant 0.15
rpsA 1833734 p.Ala65Ser missense_variant 0.16
rpsA 1833770 p.Asn77His missense_variant 0.23
rpsA 1833778 c.237C>G synonymous_variant 0.17
rpsA 1833781 c.240T>G synonymous_variant 0.17
rpsA 1833793 c.252C>T synonymous_variant 0.16
rpsA 1833802 c.261A>G synonymous_variant 0.15
rpsA 1833811 c.270G>C synonymous_variant 0.2
rpsA 1833814 c.273C>G synonymous_variant 0.19
rpsA 1833820 c.279G>A synonymous_variant 0.14
rpsA 1833928 c.387G>C synonymous_variant 0.16
rpsA 1833949 c.408T>C synonymous_variant 0.16
rpsA 1833979 c.438T>C synonymous_variant 0.18
rpsA 1833988 c.447C>G synonymous_variant 0.2
rpsA 1833991 c.450C>A synonymous_variant 0.18
rpsA 1834015 c.474G>T synonymous_variant 0.17
rpsA 1834018 c.477C>T synonymous_variant 0.17
rpsA 1834030 c.489C>G synonymous_variant 0.17
rpsA 1834051 c.510G>A synonymous_variant 0.18
rpsA 1834099 c.558C>G synonymous_variant 0.14
rpsA 1834222 c.681T>C synonymous_variant 0.14
rpsA 1834225 c.684C>G synonymous_variant 0.14
rpsA 1834231 c.690T>C synonymous_variant 0.13
rpsA 1834249 c.708T>C synonymous_variant 0.15
rpsA 1834348 c.807T>C synonymous_variant 0.21
rpsA 1834361 c.820T>C synonymous_variant 0.22
rpsA 1834366 c.825A>G synonymous_variant 0.22
rpsA 1834375 c.834G>C synonymous_variant 0.2
rpsA 1834378 c.837T>C synonymous_variant 0.17
rpsA 1834396 c.855G>C synonymous_variant 0.15
rpsA 1834411 c.870T>C synonymous_variant 0.14
rpsA 1834423 c.882G>T synonymous_variant 0.13
rpsA 1834456 c.915T>G synonymous_variant 0.15
rpsA 1834468 c.927A>G synonymous_variant 0.17
rpsA 1834489 c.948T>C synonymous_variant 0.16
rpsA 1834573 c.1032G>C synonymous_variant 0.12
rpsA 1834603 p.Glu354Asp missense_variant 0.13
rpsA 1834639 c.1098T>C synonymous_variant 0.13
rpsA 1834690 c.1149T>C synonymous_variant 0.14
rpsA 1834859 p.Ala440Thr missense_variant 1.0
tlyA 1917972 c.33A>G synonymous_variant 1.0
ndh 2103173 c.-132delG upstream_gene_variant 1.0
katG 2154724 p.Arg463Leu missense_variant 1.0
katG 2155503 c.609C>T synonymous_variant 1.0
katG 2156025 c.87C>A synonymous_variant 1.0
PPE35 2167926 p.Leu896Ser missense_variant 1.0
PPE35 2168011 p.Ser868Arg missense_variant 0.98
PPE35 2168319 p.Thr765Ile missense_variant 1.0
PPE35 2168814 c.1798dupA frameshift_variant 1.0
PPE35 2170048 p.Leu189Val missense_variant 0.33
PPE35 2170053 p.Thr187Ser missense_variant 0.32
Rv1979c 2222308 p.Asp286Gly missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 0.98
kasA 2517917 c.-198G>A upstream_gene_variant 0.93
kasA 2517926 c.-189G>A upstream_gene_variant 0.19
kasA 2517941 c.-174C>G upstream_gene_variant 0.12
kasA 2518132 c.18C>T synonymous_variant 1.0
kasA 2518672 c.558G>C synonymous_variant 0.17
kasA 2518678 c.564C>T synonymous_variant 0.19
kasA 2518684 c.570C>G synonymous_variant 0.14
kasA 2518688 p.Val192Phe missense_variant 0.13
kasA 2518693 c.579C>G synonymous_variant 0.13
kasA 2518702 c.588C>T synonymous_variant 0.13
eis 2715125 p.Thr70Ala missense_variant 1.0
ald 3086728 c.-92C>T upstream_gene_variant 1.0
ald 3086788 c.-32T>C upstream_gene_variant 1.0
ald 3087084 c.266delA frameshift_variant 1.0
Rv3083 3448783 p.Val94Ile missense_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
fprA 3474427 p.Val141Ile missense_variant 1.0
fprA 3475159 p.Asn385Asp missense_variant 1.0
fbiB 3641590 p.Gly19Glu missense_variant 0.97
rpoA 3877587 c.921A>G synonymous_variant 0.13
rpoA 3877596 c.912G>C synonymous_variant 0.16
rpoA 3877613 p.Ile299Val missense_variant 0.21
rpoA 3877617 c.891G>C synonymous_variant 0.22
rpoA 3877647 c.861C>T synonymous_variant 0.2
rpoA 3877656 c.852T>C synonymous_variant 0.16
rpoA 3877770 c.738A>G synonymous_variant 0.12
rpoA 3878217 c.291A>G synonymous_variant 0.13
rpoA 3878247 c.261G>C synonymous_variant 0.19
rpoA 3878250 c.258C>G synonymous_variant 0.19
rpoA 3878253 c.255G>C synonymous_variant 0.2
rpoA 3878264 p.Ser82Gly missense_variant 0.17
rpoA 3878271 c.237T>C synonymous_variant 0.17
rpoA 3878283 p.Glu75Asp missense_variant 0.13
rpoA 3878364 c.144A>C synonymous_variant 0.16
rpoA 3878370 c.138T>C synonymous_variant 0.2
rpoA 3878394 c.114G>T synonymous_variant 0.21
rpoA 3878400 c.108T>C synonymous_variant 0.2
rpoA 3878630 c.-124delC upstream_gene_variant 1.0
clpC1 4038368 c.2337T>C synonymous_variant 0.14
clpC1 4038403 c.2302T>C synonymous_variant 1.0
clpC1 4038596 c.2109A>G synonymous_variant 0.13
clpC1 4038602 c.2103G>C synonymous_variant 0.12
clpC1 4038640 p.Asp689Asn missense_variant 0.2
clpC1 4038647 c.2058T>G synonymous_variant 0.16
clpC1 4038683 c.2022T>C synonymous_variant 0.13
clpC1 4038704 c.2001T>C synonymous_variant 0.2
clpC1 4038710 c.1995G>C synonymous_variant 0.19
clpC1 4038713 c.1992T>C synonymous_variant 0.15
clpC1 4038726 p.Thr660Ser missense_variant 0.15
clpC1 4038749 c.1956C>T synonymous_variant 0.16
clpC1 4039022 c.1683A>G synonymous_variant 0.13
clpC1 4039067 c.1638G>T synonymous_variant 0.13
clpC1 4039085 c.1620A>G synonymous_variant 0.13
clpC1 4039391 c.1314T>G synonymous_variant 0.12
clpC1 4039397 c.1308A>G synonymous_variant 0.12
clpC1 4039748 c.957G>C synonymous_variant 0.17
clpC1 4039751 c.954A>G synonymous_variant 0.17
clpC1 4039754 c.951G>C synonymous_variant 0.17
clpC1 4039769 c.936C>G synonymous_variant 0.12
clpC1 4039793 c.912C>G synonymous_variant 0.14
clpC1 4039889 c.816G>C synonymous_variant 0.12
clpC1 4039898 c.807C>G synonymous_variant 0.17
clpC1 4039925 c.780C>T synonymous_variant 0.22
clpC1 4039931 c.774T>C synonymous_variant 0.23
clpC1 4039934 c.771G>C synonymous_variant 0.24
clpC1 4039946 c.759A>T synonymous_variant 0.24
clpC1 4039952 c.753T>C synonymous_variant 0.21
clpC1 4039958 c.747G>C synonymous_variant 0.22
clpC1 4040021 c.684A>C synonymous_variant 0.14
clpC1 4040024 c.681A>G synonymous_variant 0.14
clpC1 4040027 c.678C>G synonymous_variant 0.15
clpC1 4040030 c.675C>G synonymous_variant 0.15
clpC1 4040033 c.672G>C synonymous_variant 0.16
clpC1 4040057 c.648C>T synonymous_variant 0.19
clpC1 4040090 c.615T>C synonymous_variant 0.23
clpC1 4040093 c.612C>G synonymous_variant 0.23
clpC1 4040144 c.561G>C synonymous_variant 0.12
clpC1 4040147 c.558A>G synonymous_variant 0.12
clpC1 4040480 c.225T>C synonymous_variant 0.12
clpC1 4040522 c.183T>C synonymous_variant 0.12
embC 4240671 p.Thr270Ile missense_variant 1.0
embC 4240765 c.903C>G synonymous_variant 0.15
embC 4240769 p.Val303Ile missense_variant 0.13
embC 4240780 c.918T>C synonymous_variant 0.15
embC 4240783 c.921G>C synonymous_variant 0.15
embC 4240789 c.927T>C synonymous_variant 0.12
embC 4240800 p.Tyr313Phe missense_variant 0.13
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4242970 c.-263C>T upstream_gene_variant 1.0
embA 4244220 c.988C>T synonymous_variant 1.0
embB 4246551 p.Asn13Ser missense_variant 1.0
embB 4246864 c.351C>T synonymous_variant 1.0
embB 4247646 p.Glu378Ala missense_variant 1.0
aftB 4267858 p.Ile327Val missense_variant 1.0
aftB 4269351 c.-515C>T upstream_gene_variant 1.0
ubiA 4269387 p.Glu149Asp missense_variant 1.0
aftB 4269606 c.-770T>C upstream_gene_variant 1.0
aftB 4269750 c.-914A>G upstream_gene_variant 0.12
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0