Rv3596c - c.2058T>G
Drug resistance types
39 Sensitive
6 RR-TB
33 HR-TB
9 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
49 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 68 |
| La3;lineage4.9 | 8 |
| lineage4.8;lineage4.9 | 2 |
| lineage2.2 | 3 |
| lineage3 | 1 |
| La1.8.1 | 3 |
| lineage2.2.1 | 8 |
| lineage4.2;lineage4.9 | 1 |
| La3;lineage4 | 1 |
| La1.7.1 | 1 |
| lineage4.1.2 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage4.3.4.2.1 | 2 |
| lineage6.1.3 | 1 |
| La1.7;lineage4.9 | 2 |
| lineage4.1.2.1 | 2 |
| lineage1.1.2 | 3 |
| lineage2.2.1;lineage4 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage4.5 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La2;lineage2.2 | 1 |
| lineage4 | 3 |
| lineage2.1;lineage4.9 | 1 |
| lineage4.9;lineage7 | 3 |
| lineage4.3.2.1 | 1 |
| lineage4.9;lineage9 | 1 |
| La1;lineage4.9 | 2 |
| lineage2.2.1.2 | 2 |
| lineage6.1.2 | 1 |
| lineage2.2.1.2;lineage7 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.3.3 | 1 |
| 1 | |
| lineage4.8 | 1 |
| La2;lineage4.9 | 1 |
| La1.2;La1.8.1 | 1 |
| M.canetti;lineage1 | 1 |
| La1;lineage4.1.2 | 1 |
| lineage3.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 138 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR5341467 | Other | lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | SRR29097066 | Sensitive | lineage4.9 | None | ERR6359082 | Other | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | SRR5341469 | HR-TB | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | SRR20970016 | Other | lineage2.2 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR10808730 | Other | lineage4.9 | None | SRR5431730 | Other | La1.8.1 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | ERR4796254 | Sensitive | lineage4.9 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | ERR323066 | Sensitive | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | SRR3675270 | Other | lineage4.9 | None | ERR3283028 | Other | La3;lineage4 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | ERR387051 | Other | lineage4.9 | None | ERR502511 | Sensitive | lineage4.9 | None | SRR5535933 | Other | lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | ERR11466072 | Sensitive | lineage4.3.4.2.1 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096420 | Sensitive | lineage4.9 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR9787256 | Other | lineage6.1.3 | None | SRR6046593 | Other | lineage4.9 | None | SRR29096879 | Sensitive | lineage4.9 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | SRR3675582 | Other | lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR5341461 | HR-TB | lineage4.9 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR4798139 | RR-TB | lineage1.1.2 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | SRR5341308 | Sensitive | lineage4.9 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | SRR3675585 | Sensitive | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR28351342 | HR-TB | lineage2.2.1;lineage4 | None | SRR5341387 | Other | lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | SRR29231479 | RR-TB | lineage4.9 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR6045217 | Sensitive | lineage4.9 | None | SRR7236177 | Other | La1.8.1 | None | ERR752229 | Other | lineage4.5 | None | SRR9971114 | Other | lineage2.2.1 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | SRR1159378 | Other | lineage4.9 | None | SRR6045053 | Other | lineage4 | None | SRR1791747 | Other | La1.8.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR6046046 | Other | lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | SRR5341310 | Other | lineage1.1.2 | None | ERR702405 | Sensitive | lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR6045548 | Sensitive | lineage4.9 | None | ERR323107 | Sensitive | lineage4.9 | None | ERR4798099 | Other | lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | SRR10808805 | Other | La1;lineage4.9 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | ERR751326 | Other | lineage4.9 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR1035122 | Sensitive | lineage4.9 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | SRR14782405 | HR-TB | lineage4.9 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | ERR4769452 | Other | lineage4.9 | None | ERR736834 | Sensitive | lineage4.9 | None | ERR9787030 | RR-TB | lineage6.1.2 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | ERR4797264 | Sensitive | lineage4.9 | None | SRR28351339 | MDR-TB | lineage4 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | SRR6046878 | Other | lineage4.9 | None | ERR6866807 | Other | lineage4.9 | None | SRR7535082 | Sensitive | lineage4.9 | None | ERR323062 | Sensitive | lineage4.9 | None | SRR1158918 | Sensitive | lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | SRR18549032 | HR-TB | lineage2.2.1.2;lineage7 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR1175127 | Other | lineage2.2.1.2 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | ERR1063896 | Sensitive | None | ERR3797048 | Other | La3;lineage4.9 | None | SRR5341300 | HR-TB | lineage4.9 | None | SRR6046492 | Other | lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | SRR3675235 | Sensitive | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | ERR4821655 | HR-TB | lineage4.9 | None | SRR7240033 | Other | La1.2;La1.8.1 | None | SRR10315567 | HR-TB | lineage2.2.1 | None | SRR15014655 | Other | M.canetti;lineage1 | None | SRR5341453 | Other | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR6866639 | Other | lineage4.9 | None | SRR9970978 | Sensitive | La1;lineage4.1.2 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | SRR28351442 | HR-TB | lineage3.1 | None |
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