TB-Profiler result

Run: ERR4831657
Summary

Run ID: ERR4831657

Sample name:

Date: 01-04-2023 21:04:04

Number of reads: 715389

Percentage reads mapped: 70.2

Strain: lineage2.2.1

Drug-resistance: MDR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage2 East-Asian Beijing RD105 0.99
lineage2.2 East-Asian (Beijing) Beijing-RD207 RD105;RD207 1.0
lineage2.2.1 East-Asian (Beijing) Beijing-RD181 RD105;RD207;RD181 0.99
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761155 p.Ser450Leu missense_variant 0.92 rifampicin
rpsL 781687 p.Lys43Arg missense_variant 0.86 streptomycin
fabG1 1673425 c.-15C>T upstream_gene_variant 1.0 isoniazid, ethionamide
katG 2155168 p.Ser315Thr missense_variant 1.0 isoniazid
embB 4247429 p.Met306Val missense_variant 0.87 ethambutol
ethA 4327132 c.341delA frameshift_variant 1.0 ethionamide, ethionamide
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6590 p.Arg451Ser missense_variant 0.13
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7442 c.141G>C synonymous_variant 0.18
gyrA 7457 c.156T>C synonymous_variant 0.27
gyrA 7463 c.162G>C synonymous_variant 0.29
gyrA 7472 c.171T>C synonymous_variant 0.29
gyrA 7475 c.174A>G synonymous_variant 0.27
gyrA 7480 p.Phe60Tyr missense_variant 0.27
gyrA 7484 c.183T>C synonymous_variant 0.27
gyrA 7499 c.198G>C synonymous_variant 0.26
gyrA 7526 c.225G>C synonymous_variant 0.29
gyrA 7532 c.231T>G synonymous_variant 0.26
gyrA 7541 c.240C>G synonymous_variant 0.21
gyrA 7547 c.246C>T synonymous_variant 0.22
gyrA 7565 c.264C>T synonymous_variant 0.18
gyrA 7569 p.Ala90Leu missense_variant 0.17
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 7763 c.462T>G synonymous_variant 0.15
gyrA 8225 c.924T>C synonymous_variant 0.14
gyrA 8235 c.934_936delTTAinsCTG synonymous_variant 0.14
gyrA 8240 c.939C>A synonymous_variant 0.14
gyrA 8246 c.945C>G synonymous_variant 0.14
gyrA 8247 p.Ile316Val missense_variant 0.14
gyrA 8267 c.966G>C synonymous_variant 0.15
gyrA 8315 c.1014G>A synonymous_variant 0.13
gyrA 8324 c.1023T>C synonymous_variant 0.14
gyrA 8327 c.1026C>G synonymous_variant 0.15
gyrA 8471 c.1170T>C synonymous_variant 0.15
gyrA 8477 c.1176C>T synonymous_variant 0.15
gyrA 8480 c.1179C>T synonymous_variant 0.15
gyrA 8486 c.1185T>C synonymous_variant 0.14
gyrA 8504 c.1203G>C synonymous_variant 0.18
gyrA 8513 c.1212C>G synonymous_variant 0.16
gyrA 8516 c.1215T>C synonymous_variant 0.17
gyrA 8519 c.1218A>G synonymous_variant 0.15
gyrA 8535 p.Glu412Gln missense_variant 0.27
gyrA 8546 p.Asp415Glu missense_variant 0.28
gyrA 8561 c.1260A>C synonymous_variant 0.28
gyrA 8571 c.1270C>T synonymous_variant 0.25
gyrA 8603 c.1302A>C synonymous_variant 0.23
gyrA 8619 c.1318T>C synonymous_variant 0.22
gyrA 8624 c.1323G>C synonymous_variant 0.14
gyrA 9296 c.1995T>C synonymous_variant 0.16
gyrA 9304 p.Gly668Asp missense_variant 1.0
gyrA 9323 c.2022C>G synonymous_variant 0.19
gyrA 9324 c.2023_2025delTCGinsAGC synonymous_variant 0.19
gyrA 9335 c.2034G>C synonymous_variant 0.17
gyrA 9341 c.2040C>G synonymous_variant 0.17
gyrA 9345 c.2044_2046delAGGinsCGC synonymous_variant 0.18
gyrA 9353 c.2052G>C synonymous_variant 0.19
gyrA 9356 c.2055G>A synonymous_variant 0.19
gyrA 9374 c.2073G>T synonymous_variant 0.18
gyrA 9377 c.2076A>G synonymous_variant 0.17
gyrA 9383 c.2082T>C synonymous_variant 0.17
gyrA 9386 c.2085T>G synonymous_variant 0.16
gyrA 9407 c.2106C>T synonymous_variant 0.14
fgd1 491241 p.Asp153Glu missense_variant 0.17
fgd1 491248 p.Arg156Thr missense_variant 0.15
fgd1 491255 p.Lys158Arg missense_variant 0.16
fgd1 491259 c.477T>C synonymous_variant 0.17
fgd1 491271 c.489C>T synonymous_variant 0.19
fgd1 491283 p.Asp167Glu missense_variant 0.19
fgd1 491286 c.504G>T synonymous_variant 0.2
fgd1 491290 p.Val170Ile missense_variant 0.21
fgd1 491295 c.513C>G synonymous_variant 0.23
fgd1 491313 c.531C>T synonymous_variant 0.27
fgd1 491316 c.534C>G synonymous_variant 0.29
fgd1 491321 p.Ala180Val missense_variant 0.29
fgd1 491331 c.549G>A synonymous_variant 0.29
fgd1 491352 c.570C>T synonymous_variant 0.36
fgd1 491355 c.573C>G synonymous_variant 0.36
fgd1 491364 c.582T>C synonymous_variant 0.22
fgd1 491367 c.585G>C synonymous_variant 0.25
fgd1 491556 c.774G>A synonymous_variant 0.91
fgd1 491565 p.Ser261Arg missense_variant 0.14
fgd1 491571 c.789C>T synonymous_variant 0.17
fgd1 491595 c.813C>T synonymous_variant 0.15
fgd1 491742 c.960T>C synonymous_variant 1.0
mshA 575907 p.Ala187Val missense_variant 0.97
ccsA 620625 p.Ile245Met missense_variant 0.96
ccsA 620715 c.825C>T synonymous_variant 0.14
ccsA 620730 c.840C>T synonymous_variant 0.14
ccsA 620733 c.843G>C synonymous_variant 0.14
ccsA 620736 c.846G>A synonymous_variant 0.14
ccsA 620739 c.849A>G synonymous_variant 0.14
ccsA 620742 c.852G>C synonymous_variant 0.14
ccsA 620757 c.867C>T synonymous_variant 0.14
ccsA 620764 p.Ala292Ser missense_variant 0.14
rpoB 760298 c.492G>C synonymous_variant 0.14
rpoB 760310 c.504G>C synonymous_variant 0.15
rpoB 760316 c.510C>G synonymous_variant 0.15
rpoB 760325 c.519G>C synonymous_variant 0.15
rpoB 760376 p.Asp190Glu missense_variant 0.15
rpoB 760406 c.600G>T synonymous_variant 0.2
rpoB 760407 p.Ser201Gly missense_variant 0.2
rpoB 760415 c.609C>T synonymous_variant 0.21
rpoB 760424 c.618C>G synonymous_variant 0.18
rpoB 760430 c.624T>C synonymous_variant 0.18
rpoB 760457 c.651C>T synonymous_variant 0.17
rpoB 760463 c.657C>T synonymous_variant 0.21
rpoB 760475 c.669A>G synonymous_variant 0.18
rpoB 760478 c.672C>T synonymous_variant 0.18
rpoB 760481 c.675G>T synonymous_variant 0.18
rpoB 760484 c.678A>G synonymous_variant 0.18
rpoB 760502 c.696C>G synonymous_variant 0.15
rpoB 760611 c.805T>C synonymous_variant 0.12
rpoB 760817 c.1011A>G synonymous_variant 0.16
rpoB 760820 c.1014T>C synonymous_variant 0.16
rpoB 760826 c.1020C>G synonymous_variant 0.17
rpoB 760830 c.1024T>C synonymous_variant 0.17
rpoB 760841 c.1035T>C synonymous_variant 0.21
rpoB 760859 c.1053T>C synonymous_variant 0.21
rpoB 760862 c.1056G>C synonymous_variant 0.22
rpoB 760877 c.1071G>C synonymous_variant 0.19
rpoB 760883 c.1077G>C synonymous_variant 0.17
rpoB 760886 c.1080A>G synonymous_variant 0.17
rpoB 760887 p.Thr361Val missense_variant 0.17
rpoB 760910 c.1104C>T synonymous_variant 0.25
rpoB 760916 c.1110C>T synonymous_variant 0.23
rpoB 760919 c.1113C>T synonymous_variant 0.23
rpoB 760925 c.1119T>C synonymous_variant 0.23
rpoB 760928 c.1122G>C synonymous_variant 0.21
rpoB 760931 c.1125C>G synonymous_variant 0.21
rpoB 760946 c.1140A>G synonymous_variant 0.21
rpoB 760958 c.1152G>C synonymous_variant 0.2
rpoB 760973 c.1167G>C synonymous_variant 0.13
rpoB 761234 c.1428G>C synonymous_variant 0.14
rpoB 761261 c.1455G>T synonymous_variant 0.18
rpoB 761264 c.1458C>G synonymous_variant 0.15
rpoB 761282 c.1476C>T synonymous_variant 0.21
rpoB 761288 c.1482G>T synonymous_variant 0.21
rpoB 761318 c.1512G>T synonymous_variant 0.2
rpoB 761327 c.1521A>G synonymous_variant 0.19
rpoB 761330 c.1524G>C synonymous_variant 0.19
rpoB 761345 c.1539G>C synonymous_variant 0.18
rpoB 761354 c.1548C>T synonymous_variant 0.22
rpoB 761360 c.1554T>C synonymous_variant 0.22
rpoB 761362 p.Ser519Thr missense_variant 0.19
rpoB 761367 p.Glu521Gln missense_variant 0.19
rpoB 761374 p.Val523Asp missense_variant 0.19
rpoB 761537 c.1731C>G synonymous_variant 0.15
rpoB 761552 c.1746G>C synonymous_variant 0.17
rpoB 761555 c.1749G>C synonymous_variant 0.16
rpoB 761558 c.1752C>G synonymous_variant 0.19
rpoB 761570 c.1764T>C synonymous_variant 0.19
rpoB 761573 c.1767C>G synonymous_variant 0.18
rpoB 761579 c.1773G>C synonymous_variant 0.2
rpoB 761600 c.1794T>C synonymous_variant 0.19
rpoB 761606 c.1800C>G synonymous_variant 0.19
rpoB 761612 c.1806G>T synonymous_variant 0.21
rpoB 761615 c.1809A>C synonymous_variant 0.24
rpoB 761636 c.1830G>T synonymous_variant 0.2
rpoB 761645 c.1839C>G synonymous_variant 0.22
rpoB 761648 c.1842T>C synonymous_variant 0.22
rpoB 761666 c.1860G>C synonymous_variant 0.17
rpoB 761669 c.1863C>T synonymous_variant 0.17
rpoB 761675 c.1869G>T synonymous_variant 0.16
rpoB 761813 c.2007T>C synonymous_variant 0.15
rpoB 761834 c.2028T>C synonymous_variant 0.16
rpoB 761847 p.Cys681Arg missense_variant 0.17
rpoB 761852 c.2046C>G synonymous_variant 0.16
rpoB 761930 c.2124G>C synonymous_variant 0.18
rpoB 761948 c.2142G>C synonymous_variant 0.18
rpoB 761954 c.2148C>G synonymous_variant 0.19
rpoB 762008 c.2202C>T synonymous_variant 0.31
rpoB 762014 c.2208C>T synonymous_variant 0.32
rpoB 762047 c.2241G>A synonymous_variant 0.29
rpoB 762053 c.2247T>C synonymous_variant 0.32
rpoB 762062 c.2256T>C synonymous_variant 0.35
rpoB 762065 c.2259T>C synonymous_variant 0.34
rpoB 762083 c.2277T>C synonymous_variant 0.31
rpoB 762086 c.2280G>C synonymous_variant 0.29
rpoB 762101 c.2295C>G synonymous_variant 0.31
rpoB 762114 p.Ile770Val missense_variant 0.31
rpoB 762131 c.2325C>G synonymous_variant 0.29
rpoB 762137 c.2331C>T synonymous_variant 0.3
rpoB 762140 c.2334G>C synonymous_variant 0.27
rpoB 762143 c.2337T>C synonymous_variant 0.29
rpoB 762149 c.2343G>C synonymous_variant 0.28
rpoB 762158 c.2352G>C synonymous_variant 0.3
rpoB 762167 c.2361T>C synonymous_variant 0.27
rpoB 762176 c.2370T>C synonymous_variant 0.3
rpoB 762185 c.2379G>C synonymous_variant 0.3
rpoB 762233 c.2427G>C synonymous_variant 0.28
rpoB 762245 c.2439G>C synonymous_variant 0.25
rpoB 762284 c.2478G>T synonymous_variant 0.26
rpoB 762287 c.2481C>T synonymous_variant 0.25
rpoB 762293 c.2487T>C synonymous_variant 0.23
rpoB 762308 c.2502G>C synonymous_variant 0.23
rpoB 762317 c.2511A>G synonymous_variant 0.25
rpoB 762329 c.2523G>C synonymous_variant 0.28
rpoB 762338 c.2532T>C synonymous_variant 0.27
rpoB 762341 c.2535G>C synonymous_variant 0.28
rpoB 762347 c.2541T>C synonymous_variant 0.28
rpoB 762350 c.2544C>T synonymous_variant 0.29
rpoB 762362 p.Glu852Asp missense_variant 0.31
rpoB 762369 c.2563T>C synonymous_variant 0.34
rpoC 762374 c.-996G>C upstream_gene_variant 0.3
rpoC 762395 c.-975G>C upstream_gene_variant 0.21
rpoC 762398 c.-972T>C upstream_gene_variant 0.21
rpoC 762401 c.-969G>C upstream_gene_variant 0.21
rpoC 762404 c.-966T>C upstream_gene_variant 0.19
rpoC 762410 c.-960T>C upstream_gene_variant 0.19
rpoC 762416 c.-954A>G upstream_gene_variant 0.24
rpoC 762434 c.-936T>C upstream_gene_variant 0.26
rpoC 762443 c.-927G>C upstream_gene_variant 0.25
rpoC 762449 c.-921C>A upstream_gene_variant 0.25
rpoC 762452 c.-918G>C upstream_gene_variant 0.25
rpoC 762470 c.-900G>C upstream_gene_variant 0.24
rpoC 762491 c.-879T>C upstream_gene_variant 0.22
rpoC 762920 c.-450C>T upstream_gene_variant 0.25
rpoC 762929 c.-441G>C upstream_gene_variant 0.26
rpoC 762959 c.-411G>C upstream_gene_variant 0.33
rpoC 762962 c.-408C>T upstream_gene_variant 0.32
rpoC 762995 c.-375G>T upstream_gene_variant 0.29
rpoC 763004 c.-366G>A upstream_gene_variant 0.23
rpoC 763007 c.-363C>T upstream_gene_variant 0.22
rpoC 763028 c.-342T>C upstream_gene_variant 0.27
rpoC 763031 c.-339T>G upstream_gene_variant 1.0
rpoC 763053 c.-317T>C upstream_gene_variant 0.19
rpoC 763070 c.-300T>C upstream_gene_variant 0.12
rpoC 763160 c.-210G>T upstream_gene_variant 0.22
rpoC 763166 c.-204A>G upstream_gene_variant 0.21
rpoC 763169 c.-201A>G upstream_gene_variant 0.18
rpoC 763190 c.-180C>T upstream_gene_variant 0.21
rpoC 763199 c.-171G>C upstream_gene_variant 0.19
rpoC 763202 c.-168A>G upstream_gene_variant 0.18
rpoC 763205 c.-165G>T upstream_gene_variant 0.23
rpoC 763206 c.-164_-163delAGinsTC upstream_gene_variant 0.18
rpoC 763217 c.-153G>C upstream_gene_variant 0.21
rpoC 763226 c.-144A>G upstream_gene_variant 0.22
rpoB 763227 p.Leu1141Met missense_variant 0.22
rpoC 763232 c.-138C>T upstream_gene_variant 0.24
rpoB 763235 p.Glu1143Asp missense_variant 0.24
rpoB 763241 p.Glu1145Asp missense_variant 0.24
rpoC 763259 c.-111G>C upstream_gene_variant 0.21
rpoC 763262 c.-108C>T upstream_gene_variant 0.21
rpoC 763265 c.-105G>C upstream_gene_variant 0.21
rpoC 763268 c.-102C>G upstream_gene_variant 0.19
rpoC 763283 c.-87T>C upstream_gene_variant 0.19
rpoC 763289 c.-81C>G upstream_gene_variant 0.2
rpoC 763434 p.Gln22Arg missense_variant 0.95
rpoC 763486 c.117T>C synonymous_variant 0.17
rpoC 763492 c.123G>T synonymous_variant 0.17
rpoC 763528 c.159G>A synonymous_variant 0.15
rpoC 763558 c.189C>T synonymous_variant 0.16
rpoC 763570 c.201G>C synonymous_variant 0.17
rpoC 763573 c.204G>C synonymous_variant 0.18
rpoC 763594 c.225C>T synonymous_variant 0.17
rpoC 763603 c.234C>T synonymous_variant 0.16
rpoC 763615 c.246G>C synonymous_variant 0.15
rpoC 763618 c.249C>T synonymous_variant 0.16
rpoC 763633 c.264T>C synonymous_variant 0.15
rpoC 763660 c.291T>G synonymous_variant 0.13
rpoC 763666 c.297G>A synonymous_variant 0.17
rpoC 763675 c.306C>G synonymous_variant 0.19
rpoC 763702 c.333C>G synonymous_variant 0.28
rpoC 763709 c.340C>T synonymous_variant 0.23
rpoC 763714 c.345G>C synonymous_variant 0.24
rpoC 763717 c.348T>C synonymous_variant 0.24
rpoC 763723 c.354G>C synonymous_variant 0.17
rpoC 763732 c.363C>T synonymous_variant 0.21
rpoC 763741 c.372C>T synonymous_variant 0.17
rpoC 763747 c.378G>A synonymous_variant 0.15
rpoC 763765 c.396T>G synonymous_variant 0.15
rpoC 763792 p.Glu141Asp missense_variant 0.16
rpoC 763807 c.438T>C synonymous_variant 0.17
rpoC 763813 c.444C>G synonymous_variant 0.16
rpoC 764153 p.Gln262Lys missense_variant 0.14
rpoC 764239 c.870T>G synonymous_variant 0.19
rpoC 764254 c.885G>C synonymous_variant 0.16
rpoC 764257 c.888G>C synonymous_variant 0.21
rpoC 764263 c.894G>C synonymous_variant 0.25
rpoC 764266 c.897T>C synonymous_variant 0.25
rpoC 764272 c.903G>C synonymous_variant 0.32
rpoC 764278 c.909A>G synonymous_variant 0.3
rpoC 764293 c.924G>C synonymous_variant 0.32
rpoC 764297 p.Met310Leu missense_variant 0.31
rpoC 764344 c.975C>T synonymous_variant 0.38
rpoC 764353 c.984G>T synonymous_variant 0.44
rpoC 764365 c.996C>T synonymous_variant 0.46
rpoC 764371 c.1002G>C synonymous_variant 0.45
rpoC 764380 c.1011G>C synonymous_variant 0.38
rpoC 764387 c.1018T>C synonymous_variant 0.4
rpoC 764405 c.1036_1038delAGGinsCGC synonymous_variant 0.37
rpoC 764431 c.1062G>C synonymous_variant 0.29
rpoC 764434 c.1065A>G synonymous_variant 0.24
rpoC 764435 c.1066_1068delAGGinsCGA synonymous_variant 0.25
rpoC 764446 c.1077T>C synonymous_variant 0.26
rpoC 764449 c.1080G>C synonymous_variant 0.26
rpoC 764458 c.1089G>C synonymous_variant 0.24
rpoC 764461 c.1092A>G synonymous_variant 0.25
rpoC 764485 c.1116G>C synonymous_variant 0.26
rpoC 764491 c.1122G>T synonymous_variant 0.25
rpoC 764497 c.1128A>G synonymous_variant 0.26
rpoC 764500 c.1131C>G synonymous_variant 0.24
rpoC 764503 c.1134G>C synonymous_variant 0.22
rpoC 764521 c.1152T>C synonymous_variant 0.25
rpoC 764527 c.1158C>T synonymous_variant 0.26
rpoC 764536 c.1167G>T synonymous_variant 0.22
rpoC 764539 c.1170C>G synonymous_variant 0.2
rpoC 764575 c.1206T>G synonymous_variant 0.19
rpoC 764605 c.1236G>C synonymous_variant 0.19
rpoC 764611 c.1242G>T synonymous_variant 0.18
rpoC 764623 c.1254C>G synonymous_variant 0.18
rpoC 764626 c.1257C>T synonymous_variant 0.17
rpoC 764632 c.1263T>C synonymous_variant 0.24
rpoC 764650 c.1281G>T synonymous_variant 0.22
rpoC 764701 c.1332C>G synonymous_variant 0.31
rpoC 764713 c.1344G>T synonymous_variant 0.29
rpoC 764716 c.1347G>C synonymous_variant 0.28
rpoC 764746 c.1377G>T synonymous_variant 0.28
rpoC 764752 c.1383G>C synonymous_variant 0.27
rpoC 764758 c.1389C>G synonymous_variant 0.25
rpoC 764764 c.1395T>C synonymous_variant 0.28
rpoC 764803 c.1434C>T synonymous_variant 0.17
rpoC 764809 c.1440C>T synonymous_variant 0.15
rpoC 764815 c.1446A>G synonymous_variant 0.15
rpoC 764827 c.1458G>C synonymous_variant 0.13
rpoC 764840 p.Ile491Val missense_variant 0.84
rpoC 764869 c.1500C>T synonymous_variant 0.14
rpoC 764875 c.1506C>T synonymous_variant 0.15
rpoC 764878 c.1509C>G synonymous_variant 0.17
rpoC 764935 c.1566T>C synonymous_variant 0.15
rpoC 764948 c.1579T>C synonymous_variant 0.14
rpoC 765055 c.1686C>G synonymous_variant 0.13
rpoC 765383 p.Met672Leu missense_variant 0.14
rpoC 765445 c.2076G>C synonymous_variant 0.14
rpoC 765452 p.Ala695Arg missense_variant 0.15
rpoC 765466 c.2097C>T synonymous_variant 0.2
rpoC 765478 c.2109T>C synonymous_variant 0.21
rpoC 765480 p.Tyr704Phe missense_variant 0.2
rpoC 765499 c.2130C>G synonymous_variant 0.14
rpoC 765549 p.Ser727Thr missense_variant 0.14
rpoC 765796 c.2427C>T synonymous_variant 0.12
rpoC 765800 p.Phe811Leu missense_variant 0.13
rpoC 765823 c.2454C>A synonymous_variant 0.12
rpoC 765826 c.2457T>C synonymous_variant 0.13
rpoC 765835 c.2466C>T synonymous_variant 0.18
rpoC 765871 c.2502T>C synonymous_variant 0.29
rpoC 765875 p.Val836Ile missense_variant 0.26
rpoC 765886 c.2517C>G synonymous_variant 0.31
rpoC 765904 c.2535C>G synonymous_variant 0.32
rpoC 765908 c.2539C>T synonymous_variant 0.32
rpoC 765934 c.2565C>T synonymous_variant 0.28
rpoC 765940 c.2571A>T synonymous_variant 0.24
rpoC 765946 c.2577C>T synonymous_variant 0.23
rpoC 765947 c.2578T>C synonymous_variant 0.23
rpoC 765952 c.2583G>C synonymous_variant 0.23
rpoC 765961 c.2592G>T synonymous_variant 0.21
rpoC 765962 c.2593T>C synonymous_variant 0.21
rpoC 765967 c.2598C>T synonymous_variant 0.21
rpoC 765979 c.2610C>G synonymous_variant 0.2
rpoC 765982 c.2613C>T synonymous_variant 0.18
rpoC 765994 c.2625A>T synonymous_variant 0.17
rpoC 766690 c.3321G>C synonymous_variant 0.15
rpoC 766696 p.Gln1109His missense_variant 0.15
rpoC 766714 c.3345G>C synonymous_variant 0.17
rpoC 766717 c.3348C>G synonymous_variant 0.17
rpoC 766720 c.3351C>T synonymous_variant 0.17
rpoC 766726 c.3357T>C synonymous_variant 0.19
rpoC 766738 c.3369G>T synonymous_variant 0.14
rpoC 766741 c.3372G>C synonymous_variant 0.13
rpoC 766765 c.3396A>C synonymous_variant 0.15
rpoC 766771 c.3402G>C synonymous_variant 0.14
rpoC 766774 c.3405T>C synonymous_variant 0.14
rpoC 766775 p.Arg1136Lys missense_variant 0.14
rpoC 766981 c.3612T>C synonymous_variant 0.18
rpoC 766996 c.3627C>T synonymous_variant 0.17
rpoC 767002 c.3633G>C synonymous_variant 0.18
rpoC 767008 c.3639G>A synonymous_variant 0.19
rpoC 767020 c.3651C>G synonymous_variant 0.23
rpoC 767098 c.3729T>C synonymous_variant 0.33
rpoC 767104 c.3735C>G synonymous_variant 0.35
rpoC 767105 p.Asn1246Gln missense_variant 0.31
rpoC 767119 c.3750A>G synonymous_variant 0.31
rpoC 767134 c.3765C>T synonymous_variant 0.31
rpoC 767138 c.3769C>T synonymous_variant 0.29
rpoC 767158 c.3789T>C synonymous_variant 0.28
rpoC 767162 p.Asn1265Ala missense_variant 0.28
rpoC 767174 p.Asn1269Asp missense_variant 0.29
rpoC 767180 p.Ala1271Gln missense_variant 0.3
rpoC 767191 c.3822C>G synonymous_variant 0.22
rpoC 767197 c.3828G>A synonymous_variant 0.28
rpoC 767200 c.3831G>A synonymous_variant 0.28
rpoC 767221 c.3852C>G synonymous_variant 0.18
rpoC 767230 c.3861G>C synonymous_variant 0.18
rpoC 767233 c.3864T>C synonymous_variant 0.16
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 775847 c.2634G>T synonymous_variant 0.17
mmpL5 775851 p.Ser877Thr missense_variant 0.16
mmpL5 775856 c.2625T>C synonymous_variant 0.25
mmpL5 775865 c.2616T>C synonymous_variant 0.17
mmpL5 775877 c.2604C>G synonymous_variant 0.17
mmpL5 775885 p.Ile866Phe missense_variant 0.17
mmpL5 775886 c.2595A>C synonymous_variant 0.19
mmpL5 775892 c.2589C>T synonymous_variant 0.17
mmpL5 775904 c.2577G>A synonymous_variant 0.27
mmpL5 775909 p.Leu858Phe missense_variant 0.19
mmpL5 775915 p.Ala856Ser missense_variant 0.18
mmpL5 775916 c.2565T>C synonymous_variant 0.19
mmpL5 775921 c.2560C>T synonymous_variant 0.21
mmpL5 775924 c.2557C>T synonymous_variant 0.21
mmpL5 775951 c.2530C>T synonymous_variant 0.33
mmpL5 775955 p.Ile842Val missense_variant 0.16
mmpL5 775966 p.Ala839Ser missense_variant 0.17
mmpL5 775970 c.2511G>C synonymous_variant 0.19
mmpL5 775973 p.Leu836Ile missense_variant 0.12
mmpL5 775981 p.Leu834Met missense_variant 0.31
mmpL5 775994 p.Ile829Met missense_variant 0.14
mmpL5 775997 c.2484T>G synonymous_variant 0.14
mmpL5 776000 c.2481G>C synonymous_variant 0.14
mmpL5 776009 c.2472A>G synonymous_variant 0.14
mmpL5 776100 p.Thr794Ile missense_variant 1.0
mmpL5 776182 p.Asp767Asn missense_variant 1.0
mmpS5 779615 c.-710C>G upstream_gene_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781655 c.96T>C synonymous_variant 0.14
rpsL 781658 c.99A>G synonymous_variant 0.14
rpsL 781682 c.123T>C synonymous_variant 0.14
rpsL 781751 c.192G>C synonymous_variant 0.15
rpsL 781760 c.201T>C synonymous_variant 0.15
rpsL 781772 c.213C>T synonymous_variant 0.22
rpsL 781808 c.249C>T synonymous_variant 0.15
rpsL 781814 c.255C>T synonymous_variant 0.18
rpsL 781817 c.258G>T synonymous_variant 0.18
rpsL 781829 c.270G>C synonymous_variant 0.14
rpsL 781832 c.273T>C synonymous_variant 0.14
rpsL 781838 c.279G>C synonymous_variant 0.15
rpsL 781841 c.282C>T synonymous_variant 0.15
rpsL 781859 c.300T>G synonymous_variant 0.17
rpsL 781865 c.306G>C synonymous_variant 0.18
rpsL 781868 c.309T>C synonymous_variant 0.18
rpsL 781871 c.312G>C synonymous_variant 0.18
rpsL 781898 c.339A>C synonymous_variant 0.14
rpsL 781929 p.Gly124Ser missense_variant 0.15
rplC 800633 c.-176T>C upstream_gene_variant 0.16
rplC 800645 c.-164C>G upstream_gene_variant 0.18
rplC 800648 c.-161A>G upstream_gene_variant 0.17
rplC 800654 c.-155T>C upstream_gene_variant 0.18
rplC 800684 c.-125G>A upstream_gene_variant 0.14
rplC 800904 c.96G>C synonymous_variant 0.12
rplC 800916 c.108A>G synonymous_variant 0.16
rplC 800921 p.Arg38Leu missense_variant 0.14
rplC 800928 c.120C>T synonymous_variant 0.14
rplC 800931 c.123G>C synonymous_variant 0.14
rplC 800949 c.141T>C synonymous_variant 0.12
rplC 800964 c.156G>C synonymous_variant 0.14
rplC 800985 c.177A>G synonymous_variant 0.14
rplC 801195 c.387G>T synonymous_variant 0.19
rplC 801205 p.Arg133Ala missense_variant 0.17
rplC 801210 c.402T>C synonymous_variant 0.17
rplC 801220 p.Ser138Ala missense_variant 0.17
rplC 801231 c.423C>T synonymous_variant 0.23
rplC 801237 c.429G>A synonymous_variant 0.18
rplC 801252 c.444G>C synonymous_variant 0.19
rplC 801264 c.456C>T synonymous_variant 0.14
rplC 801267 c.459A>C synonymous_variant 0.14
rplC 801276 c.468G>C synonymous_variant 0.13
rplC 801281 p.Ala158Gly missense_variant 0.14
rplC 801285 c.477G>C synonymous_variant 0.14
fbiC 1304613 c.1683T>C synonymous_variant 0.15
fbiC 1304634 c.1704C>G synonymous_variant 0.17
Rv1258c 1406760 c.580_581insC frameshift_variant 1.0
atpE 1461149 c.105T>G synonymous_variant 0.13
atpE 1461155 c.111C>G synonymous_variant 0.21
atpE 1461159 p.Val39Ile missense_variant 0.21
atpE 1461167 c.123G>T synonymous_variant 0.21
atpE 1461170 c.126A>G synonymous_variant 0.2
atpE 1461179 c.135G>C synonymous_variant 0.24
atpE 1461182 c.138A>G synonymous_variant 0.23
atpE 1461185 c.141G>C synonymous_variant 0.23
atpE 1461197 c.153A>C synonymous_variant 0.23
atpE 1461219 c.175T>C synonymous_variant 0.26
atpE 1461224 c.180T>G synonymous_variant 0.25
atpE 1461227 c.183G>A synonymous_variant 0.25
atpE 1461230 c.186G>C synonymous_variant 0.25
atpE 1461233 c.189A>G synonymous_variant 0.24
atpE 1461251 c.207G>C synonymous_variant 0.24
atpE 1461254 c.210T>C synonymous_variant 0.25
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471922 n.78delT non_coding_transcript_exon_variant 0.33
rrs 1471925 n.80T>C non_coding_transcript_exon_variant 0.33
rrs 1471931 n.87delA non_coding_transcript_exon_variant 0.35
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 0.38
rrs 1471986 n.141C>T non_coding_transcript_exon_variant 0.36
rrs 1472019 n.174G>A non_coding_transcript_exon_variant 0.35
rrs 1472023 n.178G>T non_coding_transcript_exon_variant 0.37
rrs 1472031 n.186G>C non_coding_transcript_exon_variant 0.3
rrs 1472033 n.188A>C non_coding_transcript_exon_variant 0.3
rrs 1472035 n.190G>T non_coding_transcript_exon_variant 0.31
rrs 1472040 n.195T>G non_coding_transcript_exon_variant 0.33
rrs 1472041 n.196C>T non_coding_transcript_exon_variant 0.33
rrs 1472042 n.197T>G non_coding_transcript_exon_variant 0.33
rrs 1472053 n.211_212delGC non_coding_transcript_exon_variant 0.35
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 0.35
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.41
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.43
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.43
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.24
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.29
rrs 1472337 n.492C>G non_coding_transcript_exon_variant 0.12
rrs 1472380 n.535G>C non_coding_transcript_exon_variant 0.33
rrs 1472446 n.601T>A non_coding_transcript_exon_variant 0.56
rrs 1472452 n.607G>A non_coding_transcript_exon_variant 0.54
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.6
rrs 1472846 n.1001C>A non_coding_transcript_exon_variant 0.32
rrs 1472847 n.1002G>C non_coding_transcript_exon_variant 0.32
rrs 1472849 n.1004C>G non_coding_transcript_exon_variant 0.3
rrs 1472850 n.1005T>C non_coding_transcript_exon_variant 0.32
rrs 1472857 n.1012A>G non_coding_transcript_exon_variant 0.3
rrs 1472858 n.1013G>T non_coding_transcript_exon_variant 0.3
rrs 1472860 n.1015C>G non_coding_transcript_exon_variant 0.32
rrs 1472861 n.1016G>T non_coding_transcript_exon_variant 0.32
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.31
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.34
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.32
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.32
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.36
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.32
rrs 1473291 n.1446_1447insT non_coding_transcript_exon_variant 0.32
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.28
rrl 1473696 n.39T>C non_coding_transcript_exon_variant 0.15
rrl 1473699 n.42A>G non_coding_transcript_exon_variant 0.16
rrl 1473717 n.60G>T non_coding_transcript_exon_variant 0.17
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.19
rrl 1473770 n.113T>G non_coding_transcript_exon_variant 0.22
rrl 1473788 n.131A>G non_coding_transcript_exon_variant 0.14
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.14
rrl 1473807 n.150T>C non_coding_transcript_exon_variant 0.14
rrl 1473823 n.166T>C non_coding_transcript_exon_variant 0.16
rrl 1473829 n.172G>T non_coding_transcript_exon_variant 0.17
rrl 1473830 n.173T>G non_coding_transcript_exon_variant 0.19
rrl 1473831 n.174G>T non_coding_transcript_exon_variant 0.19
rrl 1473832 n.175C>A non_coding_transcript_exon_variant 0.19
rrl 1474135 n.478G>A non_coding_transcript_exon_variant 0.2
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.25
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.29
rrl 1474174 n.517A>G non_coding_transcript_exon_variant 0.29
rrl 1474181 n.524C>T non_coding_transcript_exon_variant 0.24
rrl 1474183 n.526T>C non_coding_transcript_exon_variant 0.24
rrl 1474185 n.528G>A non_coding_transcript_exon_variant 0.24
rrl 1474186 n.529A>G non_coding_transcript_exon_variant 0.24
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.23
rrl 1474266 n.609T>C non_coding_transcript_exon_variant 0.23
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 0.2
rrl 1474294 n.638_649delCTCTCCGGAGGA non_coding_transcript_exon_variant 0.19
rrl 1474308 n.651G>T non_coding_transcript_exon_variant 0.18
rrl 1474310 n.653T>G non_coding_transcript_exon_variant 0.19
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.35
rrl 1474415 n.760_765delACACGC non_coding_transcript_exon_variant 0.3
rrl 1474432 n.775C>T non_coding_transcript_exon_variant 0.36
rrl 1474439 n.782A>G non_coding_transcript_exon_variant 0.36
rrl 1474446 n.789C>T non_coding_transcript_exon_variant 0.47
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.25
rrl 1474627 n.970G>A non_coding_transcript_exon_variant 0.25
rrl 1474629 n.972G>A non_coding_transcript_exon_variant 0.23
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.24
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 0.24
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 0.24
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 0.24
rrl 1474639 n.982G>T non_coding_transcript_exon_variant 0.24
rrl 1474640 n.983C>T non_coding_transcript_exon_variant 0.25
rrl 1474673 n.1016T>C non_coding_transcript_exon_variant 0.27
rrl 1474676 n.1019T>A non_coding_transcript_exon_variant 0.26
rrl 1474677 n.1020A>G non_coding_transcript_exon_variant 0.27
rrl 1474710 n.1053T>A non_coding_transcript_exon_variant 0.22
rrl 1474711 n.1054G>C non_coding_transcript_exon_variant 0.22
rrl 1474712 n.1055G>A non_coding_transcript_exon_variant 0.22
rrl 1474713 n.1056T>A non_coding_transcript_exon_variant 0.24
rrl 1474753 n.1096A>G non_coding_transcript_exon_variant 0.4
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.4
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.61
rrl 1474803 n.1146G>A non_coding_transcript_exon_variant 0.56
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.64
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.56
rrl 1475120 n.1463G>T non_coding_transcript_exon_variant 0.18
rrl 1475363 n.1706C>T non_coding_transcript_exon_variant 0.12
rrl 1475369 n.1712G>T non_coding_transcript_exon_variant 0.12
rrl 1475395 n.1738T>C non_coding_transcript_exon_variant 0.13
rrl 1475396 n.1739C>G non_coding_transcript_exon_variant 0.13
rrl 1475398 n.1741C>T non_coding_transcript_exon_variant 0.13
rrl 1475404 n.1747A>T non_coding_transcript_exon_variant 0.13
rrl 1475419 n.1762C>T non_coding_transcript_exon_variant 0.25
rrl 1475429 n.1772G>T non_coding_transcript_exon_variant 0.27
rrl 1475452 n.1795C>A non_coding_transcript_exon_variant 0.42
rrl 1475479 n.1822C>G non_coding_transcript_exon_variant 0.33
rrl 1475483 n.1826C>T non_coding_transcript_exon_variant 0.38
rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 0.35
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.27
rrl 1475531 n.1874C>T non_coding_transcript_exon_variant 0.25
rrl 1475544 n.1887A>T non_coding_transcript_exon_variant 0.22
rrl 1475545 n.1888T>G non_coding_transcript_exon_variant 0.22
rrl 1475602 n.1945G>C non_coding_transcript_exon_variant 0.14
rrl 1475616 n.1959A>G non_coding_transcript_exon_variant 0.13
rrl 1475629 n.1972G>C non_coding_transcript_exon_variant 0.14
rrl 1475637 n.1980T>G non_coding_transcript_exon_variant 0.14
rrl 1475638 n.1981C>G non_coding_transcript_exon_variant 0.15
rrl 1475639 n.1982C>G non_coding_transcript_exon_variant 0.16
rrl 1475643 n.1986C>G non_coding_transcript_exon_variant 0.15
rrl 1475647 n.1990G>C non_coding_transcript_exon_variant 0.15
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 0.17
rrl 1475753 n.2096C>T non_coding_transcript_exon_variant 0.22
rrl 1475762 n.2105G>T non_coding_transcript_exon_variant 0.24
rrl 1475763 n.2106C>T non_coding_transcript_exon_variant 0.24
rrl 1475764 n.2107A>C non_coding_transcript_exon_variant 0.24
rrl 1475765 n.2108A>G non_coding_transcript_exon_variant 0.24
rrl 1475775 n.2118G>A non_coding_transcript_exon_variant 0.25
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.19
rrl 1475991 n.2334T>C non_coding_transcript_exon_variant 0.18
rrl 1475995 n.2338G>A non_coding_transcript_exon_variant 0.18
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 0.23
rrl 1476032 n.2375C>A non_coding_transcript_exon_variant 0.22
rrl 1476033 n.2376T>G non_coding_transcript_exon_variant 0.22
rrl 1476035 n.2378G>C non_coding_transcript_exon_variant 0.23
rrl 1476044 n.2387T>G non_coding_transcript_exon_variant 0.18
rrl 1476046 n.2389G>T non_coding_transcript_exon_variant 0.21
rrl 1476047 n.2390G>T non_coding_transcript_exon_variant 0.21
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.23
rrl 1476088 n.2431A>C non_coding_transcript_exon_variant 0.36
rrl 1476099 n.2442A>G non_coding_transcript_exon_variant 0.29
rrl 1476103 n.2446C>G non_coding_transcript_exon_variant 0.29
rrl 1476105 n.2448G>A non_coding_transcript_exon_variant 0.29
rrl 1476106 n.2449A>T non_coding_transcript_exon_variant 0.29
rrl 1476110 n.2453G>C non_coding_transcript_exon_variant 0.29
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.3
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.35
rrl 1476160 n.2503T>C non_coding_transcript_exon_variant 0.29
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.48
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.48
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.55
rrl 1476251 n.2594T>G non_coding_transcript_exon_variant 0.62
rrl 1476256 n.2599A>T non_coding_transcript_exon_variant 0.65
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.74
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.75
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 0.65
rrl 1476299 n.2642C>T non_coding_transcript_exon_variant 0.65
rrl 1476529 n.2872A>G non_coding_transcript_exon_variant 0.43
rrl 1476540 n.2883C>T non_coding_transcript_exon_variant 0.45
rrl 1476583 n.2926G>A non_coding_transcript_exon_variant 0.43
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.41
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 0.43
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.43
rrl 1476603 n.2946G>A non_coding_transcript_exon_variant 0.44
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.39
rrl 1476664 n.3007T>C non_coding_transcript_exon_variant 0.38
rrl 1476665 n.3008T>C non_coding_transcript_exon_variant 0.38
rrl 1476674 n.3017T>C non_coding_transcript_exon_variant 0.4
rrl 1476679 n.3022T>C non_coding_transcript_exon_variant 0.38
rrl 1476689 n.3032A>T non_coding_transcript_exon_variant 0.27
rrl 1476690 n.3033C>T non_coding_transcript_exon_variant 0.27
rrl 1476693 n.3036G>A non_coding_transcript_exon_variant 0.3
rrl 1476695 n.3038T>A non_coding_transcript_exon_variant 0.3
rrl 1476716 n.3059A>C non_coding_transcript_exon_variant 0.18
rrl 1476723 n.3066T>A non_coding_transcript_exon_variant 0.17
rrl 1476725 n.3068C>T non_coding_transcript_exon_variant 0.15
rrl 1476726 n.3069A>G non_coding_transcript_exon_variant 0.15
rrl 1476731 n.3074G>A non_coding_transcript_exon_variant 0.15
rrl 1476732 n.3075T>C non_coding_transcript_exon_variant 0.15
rrl 1476746 n.3089T>C non_coding_transcript_exon_variant 0.14
rrl 1476747 n.3090C>T non_coding_transcript_exon_variant 0.14
rrl 1476754 n.3097G>A non_coding_transcript_exon_variant 0.14
rrl 1476759 n.3102T>C non_coding_transcript_exon_variant 0.15
rrl 1476770 n.3113T>C non_coding_transcript_exon_variant 0.14
rrl 1476771 n.3114G>A non_coding_transcript_exon_variant 0.14
fabG1 1673905 p.Ser156Ala missense_variant 0.17
inhA 1673916 c.-286A>C upstream_gene_variant 0.16
fabG1 1673917 p.Val160Leu missense_variant 0.16
inhA 1673922 c.-280T>C upstream_gene_variant 0.16
inhA 1673931 c.-271C>G upstream_gene_variant 0.16
inhA 1673976 c.-226T>C upstream_gene_variant 0.14
inhA 1674210 c.9A>C synonymous_variant 1.0
inhA 1674729 c.528G>T synonymous_variant 0.14
inhA 1674742 p.Lys181Ala missense_variant 0.15
inhA 1674745 p.Tyr182Ala missense_variant 0.15
inhA 1674753 c.552G>C synonymous_variant 0.15
inhA 1674768 c.567T>C synonymous_variant 0.16
inhA 1674774 c.573A>C synonymous_variant 0.16
rpsA 1833616 c.75A>C synonymous_variant 0.17
rpsA 1833619 c.78A>C synonymous_variant 0.17
rpsA 1833628 c.87G>C synonymous_variant 0.18
rpsA 1833634 c.93G>A synonymous_variant 0.19
rpsA 1833661 c.120A>G synonymous_variant 0.18
rpsA 1833664 c.123C>A synonymous_variant 0.18
rpsA 1833676 c.135A>G synonymous_variant 0.23
rpsA 1833679 c.138G>T synonymous_variant 0.23
rpsA 1833685 c.144G>T synonymous_variant 0.22
rpsA 1833694 c.153G>C synonymous_variant 0.17
rpsA 1833697 c.156C>G synonymous_variant 0.18
rpsA 1833703 c.162C>T synonymous_variant 0.17
rpsA 1833709 c.168C>T synonymous_variant 0.18
rpsA 1833724 c.183C>T synonymous_variant 0.16
rpsA 1833727 c.186G>C synonymous_variant 0.15
rpsA 1833730 c.189C>T synonymous_variant 0.15
rpsA 1833733 c.192C>T synonymous_variant 0.15
rpsA 1833734 p.Ala65Ser missense_variant 0.15
rpsA 1833745 c.204G>C synonymous_variant 0.14
rpsA 1833787 c.246C>G synonymous_variant 0.18
rpsA 1833790 c.249T>C synonymous_variant 0.18
rpsA 1833793 c.252C>T synonymous_variant 0.19
rpsA 1833802 c.261A>G synonymous_variant 0.19
rpsA 1833808 c.267G>C synonymous_variant 0.15
rpsA 1833811 c.270G>T synonymous_variant 0.15
rpsA 1833829 c.288A>G synonymous_variant 0.21
rpsA 1833832 c.291G>A synonymous_variant 0.21
rpsA 1833838 c.297G>C synonymous_variant 0.17
rpsA 1833841 c.300C>G synonymous_variant 0.16
rpsA 1833847 c.306C>G synonymous_variant 0.18
rpsA 1833856 c.315A>G synonymous_variant 0.19
rpsA 1833862 c.321G>T synonymous_variant 0.22
rpsA 1833894 p.Ala118Glu missense_variant 0.26
rpsA 1833904 c.363G>A synonymous_variant 0.27
rpsA 1833928 c.387G>C synonymous_variant 0.28
rpsA 1833949 c.408T>C synonymous_variant 0.27
rpsA 1833970 c.429G>T synonymous_variant 0.25
rpsA 1833976 c.435C>T synonymous_variant 0.24
rpsA 1833979 c.438T>C synonymous_variant 0.24
rpsA 1833991 c.450C>A synonymous_variant 0.27
rpsA 1834000 c.459G>C synonymous_variant 0.29
rpsA 1834009 c.468C>T synonymous_variant 0.28
rpsA 1834012 c.471G>T synonymous_variant 0.28
rpsA 1834015 c.474G>C synonymous_variant 0.28
rpsA 1834021 c.480C>T synonymous_variant 0.33
rpsA 1834030 c.489C>G synonymous_variant 0.32
rpsA 1834097 c.556_557delTCinsAG synonymous_variant 0.19
rpsA 1834102 c.561T>C synonymous_variant 0.24
rpsA 1834150 c.609G>C synonymous_variant 0.17
rpsA 1834153 c.612T>C synonymous_variant 0.18
rpsA 1834154 p.Asn205Gln missense_variant 0.19
rpsA 1834157 c.616T>C synonymous_variant 0.19
rpsA 1834162 c.621A>G synonymous_variant 0.19
rpsA 1834165 c.624A>G synonymous_variant 0.19
rpsA 1834168 c.627C>T synonymous_variant 0.18
rpsA 1834169 p.Thr210Ala missense_variant 0.18
rpsA 1834177 c.636A>C synonymous_variant 1.0
rpsA 1834189 c.648G>C synonymous_variant 0.26
rpsA 1834213 c.672G>C synonymous_variant 0.29
rpsA 1834234 c.693G>C synonymous_variant 0.25
rpsA 1834240 c.699T>C synonymous_variant 0.28
rpsA 1834246 c.705G>C synonymous_variant 0.29
rpsA 1834249 c.708T>C synonymous_variant 0.28
rpsA 1834252 c.711C>G synonymous_variant 0.3
rpsA 1834261 c.720A>G synonymous_variant 0.3
rpsA 1834264 c.723G>C synonymous_variant 0.29
rpsA 1834279 c.738C>T synonymous_variant 0.38
rpsA 1834297 c.756C>T synonymous_variant 0.42
rpsA 1834303 c.762T>G synonymous_variant 0.42
rpsA 1834306 c.765T>C synonymous_variant 0.45
rpsA 1834345 c.804C>T synonymous_variant 0.34
rpsA 1834348 c.807T>C synonymous_variant 0.3
rpsA 1834361 c.820T>C synonymous_variant 0.36
rpsA 1834366 c.825A>G synonymous_variant 0.33
rpsA 1834396 c.855G>C synonymous_variant 0.47
rpsA 1834411 c.870T>C synonymous_variant 0.53
rpsA 1834423 c.882G>T synonymous_variant 0.53
rpsA 1834451 c.910T>C synonymous_variant 0.41
rpsA 1834456 c.915T>G synonymous_variant 0.41
rpsA 1834468 c.927A>G synonymous_variant 0.38
rpsA 1834489 c.948T>C synonymous_variant 0.35
rpsA 1834498 c.957C>T synonymous_variant 0.33
rpsA 1834513 c.972C>G synonymous_variant 0.34
rpsA 1834520 p.Ala327Ser missense_variant 0.33
rpsA 1834528 c.987T>C synonymous_variant 0.25
rpsA 1834540 c.999G>C synonymous_variant 0.23
rpsA 1834543 c.1002C>G synonymous_variant 0.23
rpsA 1834546 c.1005T>C synonymous_variant 0.22
rpsA 1834554 c.1014_1015delTG frameshift_variant 0.21
rpsA 1834558 c.1017_1018insAG frameshift_variant 0.21
rpsA 1834663 c.1122C>T synonymous_variant 0.14
rpsA 1834690 c.1149T>C synonymous_variant 0.19
rpsA 1834732 c.1191T>C synonymous_variant 0.15
rpsA 1834753 c.1212T>C synonymous_variant 0.13
rpsA 1834765 p.Glu408Asp missense_variant 0.13
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2154724 p.Arg463Leu missense_variant 1.0
katG 2155716 c.396T>G synonymous_variant 0.16
PPE35 2167926 p.Leu896Ser missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
pncA 2289238 p.Arg2Trp missense_variant 1.0
kasA 2517941 c.-174C>G upstream_gene_variant 0.29
kasA 2517959 c.-156C>T upstream_gene_variant 0.25
kasA 2517962 c.-153C>G upstream_gene_variant 0.25
kasA 2517968 c.-147T>C upstream_gene_variant 0.25
kasA 2517974 c.-141T>C upstream_gene_variant 0.25
kasA 2517980 c.-135C>T upstream_gene_variant 0.24
kasA 2517989 c.-126T>G upstream_gene_variant 0.24
kasA 2517993 c.-122G>T upstream_gene_variant 0.21
kasA 2518747 c.633C>G synonymous_variant 0.14
kasA 2518756 c.642G>C synonymous_variant 0.14
kasA 2518780 p.Glu222Asp missense_variant 0.14
kasA 2518783 c.669T>C synonymous_variant 0.14
kasA 2518785 p.Glu224Ala missense_variant 0.15
kasA 2518787 p.Arg225Gly missense_variant 0.14
kasA 2518792 c.678C>G synonymous_variant 0.17
kasA 2518795 c.681C>T synonymous_variant 0.19
kasA 2518813 c.699C>T synonymous_variant 0.19
kasA 2518816 c.702C>T synonymous_variant 0.19
kasA 2518825 c.711T>C synonymous_variant 0.18
kasA 2518843 c.729T>C synonymous_variant 0.17
kasA 2518847 p.Leu245Met missense_variant 0.17
kasA 2518853 p.Leu247Ile missense_variant 0.15
kasA 2518864 c.750G>C synonymous_variant 0.17
kasA 2518878 p.Lys255Ile missense_variant 0.13
pepQ 2859864 c.555T>G synonymous_variant 1.0
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
Rv3236c 3612813 p.Thr102Ala missense_variant 1.0
rpoA 3877728 c.780C>G synonymous_variant 0.14
rpoA 3877731 c.777G>T synonymous_variant 0.14
rpoA 3877734 c.774G>C synonymous_variant 0.14
rpoA 3877743 c.765T>C synonymous_variant 0.17
rpoA 3877749 c.759C>T synonymous_variant 0.16
rpoA 3877764 c.744C>G synonymous_variant 0.21
rpoA 3877776 c.732T>C synonymous_variant 0.22
rpoA 3877782 c.726T>C synonymous_variant 0.23
rpoA 3877785 c.723C>A synonymous_variant 0.24
rpoA 3877818 c.690A>G synonymous_variant 0.29
rpoA 3877848 c.660C>T synonymous_variant 0.41
rpoA 3877856 c.652T>C synonymous_variant 0.38
rpoA 3877857 c.651G>A synonymous_variant 0.36
rpoA 3877866 c.642G>C synonymous_variant 0.38
rpoA 3877875 c.633T>A synonymous_variant 0.35
rpoA 3877878 c.630G>C synonymous_variant 0.35
rpoA 3877887 c.621G>C synonymous_variant 0.38
rpoA 3877893 c.615C>T synonymous_variant 0.34
rpoA 3877905 c.603A>G synonymous_variant 0.37
rpoA 3877908 c.600T>C synonymous_variant 0.37
rpoA 3877920 c.588G>C synonymous_variant 0.29
rpoA 3877923 c.585C>T synonymous_variant 0.3
rpoA 3877926 c.582G>C synonymous_variant 0.3
rpoA 3877962 c.546G>T synonymous_variant 0.19
rpoA 3877971 p.Asp179Glu missense_variant 0.17
rpoA 3878070 c.438T>C synonymous_variant 0.12
rpoA 3878118 c.390T>C synonymous_variant 0.17
rpoA 3878127 c.381G>C synonymous_variant 0.16
rpoA 3878143 p.Gly122Asp missense_variant 0.27
rpoA 3878145 c.363C>G synonymous_variant 0.27
rpoA 3878160 c.348C>G synonymous_variant 0.25
rpoA 3878163 c.345C>T synonymous_variant 0.28
rpoA 3878187 c.321C>A synonymous_variant 0.28
rpoA 3878193 c.315T>C synonymous_variant 0.28
rpoA 3878197 p.Glu104Ala missense_variant 0.29
rpoA 3878205 c.303T>C synonymous_variant 0.33
rpoA 3878217 c.291A>G synonymous_variant 0.32
rpoA 3878238 c.270C>T synonymous_variant 0.32
rpoA 3878244 c.264G>A synonymous_variant 0.28
rpoA 3878247 c.261G>A synonymous_variant 0.28
rpoA 3878256 c.252G>C synonymous_variant 0.27
rpoA 3878264 p.Ser82Gly missense_variant 0.27
rpoA 3878271 c.237T>C synonymous_variant 0.29
rpoA 3878283 p.Glu75Asp missense_variant 0.19
rpoA 3878292 c.216T>C synonymous_variant 0.14
clpC1 4038551 c.2154C>G synonymous_variant 0.12
clpC1 4038563 c.2142C>T synonymous_variant 0.16
clpC1 4038584 c.2121G>A synonymous_variant 0.25
clpC1 4038587 c.2118C>G synonymous_variant 0.29
clpC1 4038596 c.2109A>G synonymous_variant 0.4
clpC1 4038602 c.2103G>C synonymous_variant 0.4
clpC1 4038623 c.2082A>G synonymous_variant 0.47
clpC1 4038640 p.Asp689Asn missense_variant 0.35
clpC1 4038647 c.2058T>G synonymous_variant 0.32
clpC1 4038658 p.Lys683Gln missense_variant 0.22
clpC1 4038660 c.2044_2045delTCinsAG synonymous_variant 0.22
clpC1 4038662 c.2043T>C synonymous_variant 0.22
clpC1 4038671 c.2034T>G synonymous_variant 0.21
clpC1 4038679 p.Pro676Ala missense_variant 0.25
clpC1 4038683 c.2022T>C synonymous_variant 0.25
clpC1 4038692 c.2013C>T synonymous_variant 0.24
clpC1 4038695 c.2010C>G synonymous_variant 0.28
clpC1 4038704 c.2001T>C synonymous_variant 0.22
clpC1 4038710 c.1995G>C synonymous_variant 0.2
clpC1 4038713 c.1992T>C synonymous_variant 0.19
clpC1 4038725 c.1980C>G synonymous_variant 0.17
clpC1 4038740 c.1965G>C synonymous_variant 0.16
clpC1 4039022 c.1683A>G synonymous_variant 0.22
clpC1 4039046 c.1659C>T synonymous_variant 0.29
clpC1 4039064 c.1641C>T synonymous_variant 0.27
clpC1 4039067 c.1638G>C synonymous_variant 0.26
clpC1 4039079 c.1626C>G synonymous_variant 0.3
clpC1 4039085 c.1620A>G synonymous_variant 0.27
clpC1 4039091 c.1614G>C synonymous_variant 0.23
clpC1 4039097 c.1608G>T synonymous_variant 0.24
clpC1 4039100 c.1605C>T synonymous_variant 0.23
clpC1 4039103 c.1602T>C synonymous_variant 0.19
clpC1 4039106 c.1599G>C synonymous_variant 0.18
clpC1 4039118 c.1587C>A synonymous_variant 0.19
clpC1 4039136 c.1569C>T synonymous_variant 0.19
clpC1 4039142 c.1563A>G synonymous_variant 0.19
clpC1 4039145 c.1560G>C synonymous_variant 0.17
clpC1 4039169 c.1536A>G synonymous_variant 0.18
clpC1 4039241 c.1464G>C synonymous_variant 0.16
clpC1 4039274 c.1431G>C synonymous_variant 0.2
clpC1 4039286 c.1419T>C synonymous_variant 0.24
clpC1 4039295 c.1410A>C synonymous_variant 0.18
clpC1 4039298 c.1407T>C synonymous_variant 0.18
clpC1 4039310 c.1395A>G synonymous_variant 0.18
clpC1 4039313 c.1392C>G synonymous_variant 0.18
clpC1 4039320 p.Ala462Gly missense_variant 0.17
clpC1 4039322 c.1383T>C synonymous_variant 0.17
clpC1 4039328 c.1377A>C synonymous_variant 0.16
clpC1 4039361 c.1344C>G synonymous_variant 0.16
clpC1 4039382 c.1323C>G synonymous_variant 0.18
clpC1 4039394 c.1311G>C synonymous_variant 0.14
clpC1 4039430 c.1275T>C synonymous_variant 0.16
clpC1 4039442 c.1263A>G synonymous_variant 0.15
clpC1 4039454 c.1251A>T synonymous_variant 0.15
clpC1 4039457 c.1248C>T synonymous_variant 0.15
clpC1 4039463 c.1242C>G synonymous_variant 0.15
clpC1 4039466 c.1239T>C synonymous_variant 0.15
clpC1 4039469 c.1236T>C synonymous_variant 0.15
clpC1 4039472 c.1233G>C synonymous_variant 0.14
clpC1 4039478 c.1227G>C synonymous_variant 0.15
clpC1 4039481 c.1224T>C synonymous_variant 0.16
clpC1 4039484 c.1221T>C synonymous_variant 0.15
clpC1 4039487 c.1218G>C synonymous_variant 0.15
clpC1 4039517 c.1188C>G synonymous_variant 0.17
clpC1 4039541 c.1164C>G synonymous_variant 0.17
clpC1 4039556 c.1149G>C synonymous_variant 0.16
clpC1 4039559 c.1146C>G synonymous_variant 0.16
clpC1 4039570 p.Met379Leu missense_variant 0.19
clpC1 4039574 p.Ala377Gly missense_variant 0.19
clpC1 4039577 c.1128T>C synonymous_variant 0.22
clpC1 4039589 c.1116G>C synonymous_variant 0.3
clpC1 4039592 c.1113G>C synonymous_variant 0.32
clpC1 4039610 c.1095G>C synonymous_variant 0.33
clpC1 4039616 c.1089G>C synonymous_variant 0.37
clpC1 4039622 c.1083C>T synonymous_variant 0.35
clpC1 4039649 c.1056G>C synonymous_variant 0.33
clpC1 4039652 c.1053G>C synonymous_variant 0.36
clpC1 4039670 c.1035G>C synonymous_variant 0.35
clpC1 4039682 c.1023C>G synonymous_variant 0.32
clpC1 4039694 c.1011G>C synonymous_variant 0.25
clpC1 4039724 c.981A>G synonymous_variant 0.23
clpC1 4039733 c.972G>C synonymous_variant 0.17
clpC1 4039742 c.963C>T synonymous_variant 0.14
clpC1 4039760 c.945T>C synonymous_variant 0.17
clpC1 4039769 c.936C>G synonymous_variant 0.17
clpC1 4039778 c.927A>G synonymous_variant 0.19
clpC1 4039784 c.921C>T synonymous_variant 0.19
clpC1 4039793 c.912C>G synonymous_variant 0.22
clpC1 4039802 c.903G>C synonymous_variant 0.22
clpC1 4039817 c.888A>T synonymous_variant 0.23
clpC1 4039820 c.885T>G synonymous_variant 0.22
clpC1 4039823 c.882T>C synonymous_variant 0.21
clpC1 4039829 c.874_876delTTGinsCTC synonymous_variant 0.2
clpC1 4039832 c.873C>A synonymous_variant 0.2
clpC1 4039850 c.855T>C synonymous_variant 0.21
clpC1 4039865 c.840T>C synonymous_variant 0.21
clpC1 4039883 c.822G>A synonymous_variant 0.24
clpC1 4039889 c.816G>C synonymous_variant 0.26
clpC1 4039898 c.807C>G synonymous_variant 0.3
clpC1 4039904 c.801A>G synonymous_variant 0.27
clpC1 4039931 c.774T>C synonymous_variant 0.23
clpC1 4039934 c.771G>A synonymous_variant 0.24
clpC1 4039937 c.768G>C synonymous_variant 0.23
clpC1 4039946 c.759A>T synonymous_variant 0.24
clpC1 4039949 c.756G>C synonymous_variant 0.21
clpC1 4039952 c.753T>C synonymous_variant 0.18
clpC1 4039958 c.747G>C synonymous_variant 0.17
clpC1 4039991 c.714G>C synonymous_variant 0.27
clpC1 4040003 c.702G>C synonymous_variant 0.27
clpC1 4040021 c.684A>C synonymous_variant 0.22
clpC1 4040024 c.681A>G synonymous_variant 0.14
clpC1 4040033 c.672G>C synonymous_variant 0.15
clpC1 4040042 c.663C>T synonymous_variant 0.15
clpC1 4040087 c.618G>T synonymous_variant 0.17
clpC1 4040090 c.613_615delTCTinsAGC synonymous_variant 0.17
clpC1 4040093 c.612C>G synonymous_variant 0.17
clpC1 4040258 c.447G>A synonymous_variant 0.14
clpC1 4040267 c.438A>G synonymous_variant 0.13
clpC1 4040277 c.427_428delTCinsAG synonymous_variant 0.13
clpC1 4040279 c.426C>G synonymous_variant 0.13
clpC1 4040306 c.399G>C synonymous_variant 0.18
clpC1 4040309 c.396C>G synonymous_variant 0.18
clpC1 4040315 c.390G>A synonymous_variant 0.18
clpC1 4040324 c.381G>C synonymous_variant 0.15
clpC1 4040335 c.370C>T synonymous_variant 0.14
clpC1 4040336 c.369G>C synonymous_variant 0.14
clpC1 4040345 c.360C>G synonymous_variant 0.17
clpC1 4040348 c.357G>C synonymous_variant 0.17
clpC1 4040354 c.351A>G synonymous_variant 0.14
clpC1 4040357 c.348T>C synonymous_variant 0.14
clpC1 4040363 c.342A>T synonymous_variant 0.17
clpC1 4040366 c.339C>T synonymous_variant 0.15
clpC1 4040369 c.336C>G synonymous_variant 0.18
clpC1 4040375 c.330G>C synonymous_variant 0.2
clpC1 4040380 c.325T>C synonymous_variant 0.18
clpC1 4040387 c.318A>G synonymous_variant 0.2
clpC1 4040411 c.294T>C synonymous_variant 0.25
clpC1 4040423 c.282A>G synonymous_variant 0.24
clpC1 4040431 c.274T>C synonymous_variant 0.16
clpC1 4040433 c.271_272delAGinsTC synonymous_variant 0.16
clpC1 4040441 c.264C>G synonymous_variant 0.17
clpC1 4040444 c.261C>G synonymous_variant 0.17
clpC1 4040450 c.255A>G synonymous_variant 0.16
clpC1 4040459 c.246C>G synonymous_variant 0.19
clpC1 4040462 c.243C>T synonymous_variant 0.18
clpC1 4040465 c.240T>C synonymous_variant 0.18
clpC1 4040468 c.237G>C synonymous_variant 0.18
clpC1 4040471 c.234T>C synonymous_variant 0.18
clpC1 4040477 c.228G>C synonymous_variant 0.19
clpC1 4040480 c.225T>C synonymous_variant 0.22
clpC1 4040495 c.210C>G synonymous_variant 0.29
clpC1 4040522 c.183T>C synonymous_variant 0.27
clpC1 4040531 c.174T>C synonymous_variant 0.31
clpC1 4040546 c.159G>C synonymous_variant 0.25
clpC1 4040561 c.144A>G synonymous_variant 0.25
clpC1 4040573 c.132T>A synonymous_variant 0.26
clpC1 4040579 c.126A>G synonymous_variant 0.24
clpC1 4040582 c.123G>C synonymous_variant 0.2
clpC1 4040585 c.120A>G synonymous_variant 0.19
clpC1 4040588 c.117T>C synonymous_variant 0.2
clpC1 4040591 c.114C>T synonymous_variant 0.19
clpC1 4040594 c.111G>T synonymous_variant 0.21
clpC1 4040597 c.108C>T synonymous_variant 0.21
clpC1 4040600 c.105A>G synonymous_variant 0.22
clpC1 4040603 c.102T>G synonymous_variant 0.22
clpC1 4040606 c.99T>C synonymous_variant 0.26
clpC1 4040618 c.87C>G synonymous_variant 0.25
clpC1 4040644 c.61A>C synonymous_variant 0.2
clpC1 4040648 c.57G>A synonymous_variant 0.19
clpC1 4040654 c.51G>A synonymous_variant 0.19
clpC1 4040657 c.48T>G synonymous_variant 0.18
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4242838 c.-395C>G upstream_gene_variant 0.13
embA 4242844 c.-389A>G upstream_gene_variant 0.13
embA 4242847 c.-386C>G upstream_gene_variant 0.12
embA 4243460 c.228C>T synonymous_variant 1.0
embA 4243675 p.Ala148Glu missense_variant 0.12
embA 4246359 p.Ala1043Thr missense_variant 0.17
embB 4247427 p.Gly305Asp missense_variant 0.13
embB 4247437 c.924A>C synonymous_variant 0.14
embB 4247440 c.927C>G synonymous_variant 0.17
embB 4247449 c.936C>T synonymous_variant 0.17
embB 4247455 c.942C>T synonymous_variant 0.15
embB 4247464 c.951C>G synonymous_variant 0.15
embB 4247470 c.957T>C synonymous_variant 0.14
embB 4247491 c.978G>C synonymous_variant 0.18
embB 4247497 c.984T>C synonymous_variant 0.18
embB 4247511 p.Tyr333Phe missense_variant 0.17
embB 4247527 c.1014G>C synonymous_variant 0.17
embB 4247536 c.1023C>A synonymous_variant 0.17
aftB 4267647 p.Asp397Gly missense_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0
gid 4407927 p.Glu92Asp missense_variant 1.0