Rv0668 - c.1018T>C


Drug resistance types
71 Sensitive 24 RR-TB 93 HR-TB 44 MDR-TB 6 Pre-XDR-TB 2 XDR-TB 115 Other
lineage Counts
lineage Count
lineage2.2.1 15
lineage4.9 176
La1.8.1 5
lineage4 8
lineage4.3.3;lineage4.8 4
lineage4.3.4.1 4
M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
lineage2.2.2 2
lineage1;lineage4.9 1
La1;lineage4.9 2
La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 1
La1.7;lineage4.9 6
La1.6;La3;M.canetti;lineage4.2;lineage4.9 1
lineage2.2.1.1 5
La3;M.canetti;lineage2;lineage4.2;lineage4.3 1
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 1
lineage2.1;lineage4.9;lineage6.3 1
lineage4.6.2.2 3
lineage4.6.1.2 4
La1.7;lineage3;lineage4.9;lineage7 1
lineage4.3.3 5
lineage4.1.1.3;lineage4.9 2
lineage3 7
La1.2.BCG 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 1
3
lineage4.8 8
lineage4.1.2.1 8
lineage4.2.1.1;lineage4.3.3 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 3
La1.2 2
lineage4.2;lineage4.9 3
lineage3.1.2.1 1
La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 2
lineage4.6.5 2
lineage1.2.1.1 1
La1.7;lineage4.9;lineage7 3
La2;lineage4.9 1
M.canetti;lineage4.6.4;lineage4.9 2
lineage4.3.2.1 2
lineage4.1.1.3 5
lineage1.1.2 2
La1.7;lineage3.1;lineage4 1
lineage2.1;lineage4.1.4;lineage4.9 1
lineage2.2.1;lineage4.5 1
lineage1.2.2.2 1
M.canetti;lineage4.2;lineage4.9 2
M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 1
lineage1.2.1.2 1
lineage4.3.3;lineage4.9 1
La1.7.X-unk4 1
La1.4 1
lineage6.1.2 1
M.canetti;lineage4.2 1
La1.7;M.canetti;lineage4.9 1
lineage3.1.3 2
lineage4.8;lineage4.9 2
lineage4.4.1.1.1 1
lineage6.1.3 2
La1.6;La3;M.canetti;lineage4.2.2 1
La1.7.1 1
lineage4.1.2 1
lineage1.1.1 1
La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 1
La1;lineage2;lineage4.9 1
lineage4.4.2 1
lineage4.3.4.2.1 2
La3;lineage4.3.4 1
lineage4.5 1
La3;lineage4.9 1
lineage4.4.1.1 1
lineage4.2.1 1
La1;lineage4.1.2 1
lineage4.1;lineage4.9 2
lineage4.1.1.1 1
lineage4.2;lineage4.8.1;lineage4.9 2
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 1
La3;lineage2.1;lineage4.9;lineage6.3 1
lineage1.1.3.1 1
La1.7;lineage4.9;lineage6 1
lineage4.1.1.2 1
La2;lineage2.2 1
M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 1
spoligotype Counts
spoligotype Count
None 355
Geographic prevalence
Country level data for this variant is available for 1 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR1181251 Other lineage2.2.1 None
ERR4769508 RR-TB lineage4.9 None
SRR7236233 Other La1.8.1 None
SRR5341384 HR-TB lineage4.9 None
ERR349265 Other lineage4.9 None
SRR12708415 HR-TB lineage2.2.1 None
SRR6046133 HR-TB lineage4.9 None
ERR6865502 Sensitive lineage4 None
SRR12708414 HR-TB lineage2.2.1 None
SRR1062920 MDR-TB lineage4.3.3;lineage4.8 None
ERR11465353 Sensitive lineage4.3.4.1 None
SRR6046397 RR-TB M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
DRR213597 MDR-TB lineage2.2.2 None
ERR323066 HR-TB lineage4.9 None
ERR6359066 HR-TB lineage4.9 None
ERR4797350 Sensitive lineage1;lineage4.9 None
SRR22424787 Sensitive lineage4.9 None
SRR1175508 Sensitive lineage4.9 None
SRR1175052 HR-TB lineage4.9 None
ERR926160 Other lineage4.9 None
SRR1180996 Other lineage4.9 None
SRR6511621 HR-TB lineage4.9 None
SRR10808805 Other La1;lineage4.9 None
SRR6045371 Other lineage4.9 None
ERR3273109 HR-TB lineage4 None
ERR4798406 MDR-TB La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 None
SRR3675585 HR-TB lineage4.9 None
SRR3675522 Other lineage4.9 None
ERR926163 Other lineage4.9 None
SRR5341387 Other lineage4.9 None
ERR751326 Other lineage4.9 None
SRR14801759 MDR-TB La1.7;lineage4.9 None
ERR323107 HR-TB lineage4.9 None
ERR5311079 MDR-TB La1.6;La3;M.canetti;lineage4.2;lineage4.9 None
ERR3797073 Other La1.8.1 None
ERR736831 Other lineage4.9 None
ERR323108 HR-TB La1.7;lineage4.9 None
ERR6359069 HR-TB lineage4.9 None
ERR4831621 MDR-TB lineage2.2.1.1 None
ERR158583 MDR-TB La3;M.canetti;lineage2;lineage4.2;lineage4.3 None
ERR4769444 HR-TB lineage4.9 None
SRR5341418 MDR-TB La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 None
SRR3675246 Other lineage4.9 None
ERR702404 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR5341455 Sensitive lineage4.9 None
SRR1158918 Other lineage4.9 None
ERR369156 Sensitive lineage4.9 None
SRR3675247 Other lineage4.9 None
ERR373947 Other lineage4.9 None
SRR5341467 Other lineage4.9 None
SRR1184024 RR-TB lineage2.2.1.1 None
ERR4819809 HR-TB lineage4.6.2.2 None
SRR5341425 Other lineage4.9 None
SRR1140712 MDR-TB lineage4.6.1.2 None
SRR5341315 Other La1.7;lineage3;lineage4.9;lineage7 None
ERR2517475 Other lineage4 None
ERR502510 HR-TB lineage4.9 None
ERR363500 Other lineage4.9 None
SRR6045892 Sensitive lineage4.9 None
ERR2446382 Other lineage4 None
SRR1175491 MDR-TB lineage4.3.4.1 None
SRR3675260 Sensitive lineage4.9 None
SRR1196478 Other lineage4.9 None
SRR12708419 Other lineage4.3.3 None
ERR736834 HR-TB lineage4.9 None
SRR5341299 HR-TB lineage4.9 None
SRR1175507 Sensitive lineage4.1.1.3;lineage4.9 None
SRR5341412 Pre-XDR-TB lineage3 None
SRR1915487 Other La1.2.BCG None
ERR349266 Other lineage4.9 None
ERR473334 HR-TB lineage4.9 None
ERR161037 HR-TB lineage4.9 None
ERR369159 Other lineage4.9 None
ERR4769442 Sensitive lineage4.9 None
ERR133986 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 None
ERR363446 Other lineage4.9 None
ERR3283025 MDR-TB La1.7;lineage4.9 None
SRR6045359 HR-TB lineage4.9 None
ERR4796577 HR-TB None
SRR29772570 Other lineage4.9 None
ERR349300 Other lineage4.9 None
ERR9786444 Sensitive lineage4.8 None
SRR1175500 Sensitive lineage4.1.1.3;lineage4.9 None
ERR3806850 HR-TB lineage4.1.2.1 None
SRR5341373 Other lineage4.9 None
SAMN02585910 RR-TB lineage2.2.1 None
ERR867542 HR-TB lineage4.2.1.1;lineage4.3.3 None
ERR9786656 Sensitive lineage4.1.2.1 None
ERR067681 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
SRR23961549 Other La1.2 None
SRR6046295 MDR-TB lineage4.2;lineage4.9 None
SRR1175496 Sensitive lineage4.9 None
ERR6359070 Sensitive lineage4.9 None
ERR369158 Other lineage4.9 None
ERR2693252 HR-TB lineage4.9 None
SRR18910194 HR-TB lineage2.2.2 None
SRR16156804 Sensitive lineage4.9 None
ERR4188247 HR-TB lineage4.9 None
ERR4816717 RR-TB lineage3.1.2.1 None
SRR6046362 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
ERR4817667 HR-TB lineage4.8 None
ERR363474 Sensitive lineage4.9 None
ERR7801176 RR-TB lineage4.6.5 None
ERR4821686 Sensitive lineage4.1.2.1 None
ERR4596902 MDR-TB lineage3 None
ERR4814734 Other lineage1.2.1.1 None
SRR3675473 Sensitive lineage4.9 None
ERR4831617 MDR-TB lineage2.2.1 None
SRR5153091 HR-TB lineage4.3.3 None
SRR5341422 HR-TB La1.7;lineage4.9;lineage7 None
SRR5341300 HR-TB lineage4.9 None
ERR369163 Other lineage4.9 None
ERR323115 Sensitive lineage4.9 None
ERR1063857 MDR-TB La2;lineage4.9 None
ERR369161 Sensitive lineage4.9 None
SRR3675586 RR-TB M.canetti;lineage4.6.4;lineage4.9 None
SRR12708407 HR-TB lineage4.3.2.1 None
ERR736837 Pre-XDR-TB lineage4.9 None
SRR10315751 MDR-TB lineage4.8 None
ERR373946 Other lineage4.9 None
ERR9786164 RR-TB lineage4.1.1.3 None
ERR4769521 RR-TB lineage4.9 None
SRR16156817 Other lineage4.9 None
ERR4798823 HR-TB lineage4 None
SRR5341310 Other lineage1.1.2 None
SRR6046897 Sensitive lineage4.9 None
ERR4817628 Sensitive lineage4.8 gb
ERR405219 HR-TB La1.7;lineage3.1;lineage4 None
ERR926158 Sensitive lineage4.9 None
SRR5341308 HR-TB lineage4.9 None
SRR1049677 MDR-TB lineage4.3.3;lineage4.8 None
SRR3675580 Sensitive lineage4.9 None
ERR3797036 HR-TB lineage2.1;lineage4.1.4;lineage4.9 None
ERR1063846 HR-TB lineage4.9 None
ERR4811035 Pre-XDR-TB lineage2.2.1;lineage4.5 None
SRR3675477 Sensitive lineage4.9 None
ERR4188213 Other La1.8.1 None
SRR12708411 HR-TB lineage1.2.2.2 None
ERR349264 Other lineage4.9 None
ERR1035122 HR-TB lineage4.9 None
ERR323062 HR-TB lineage4.9 None
SRR3675571 MDR-TB M.canetti;lineage4.2;lineage4.9 None
ERR363498 Other lineage4.9 None
ERR1035162 MDR-TB M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 None
SRR3675235 HR-TB lineage4.9 None
ERR1023525 HR-TB La1.7;lineage4.9 None
ERR4829530 Pre-XDR-TB lineage4.8 None
SRR12708413 HR-TB lineage4.1.1.3 None
ERR926159 Sensitive lineage4.9 None
SRR6045706 Other lineage4.9 None
SRR12006550 Other lineage1.2.1.2 None
ERR4796254 Other lineage4.9 None
ERR4797193 HR-TB lineage1.1.2 None
ERR12015084 Other lineage4.8 None
SRR12708396 MDR-TB lineage4.3.2.1 None
SRR10808399 Sensitive lineage4.9 None
ERR3801503 Other lineage4.6.2.2 None
SRR12708409 HR-TB lineage4.3.3 None
SRR5341453 Other lineage4.9 None
SRR1181091 Other lineage2.2.1.1 None
ERR363490 Other lineage4.9 None
ERR4812155 Other lineage4.9 None
SRR13583478 HR-TB lineage4.3.4.1 None
SRR3675229 Sensitive lineage4.9 None
ERR4819546 HR-TB lineage3 None
ERR926164 Other lineage4.9 None
SRR12708372 Sensitive lineage4.9 None
SRR5341437 Sensitive lineage4.9 None
ERR4797313 Sensitive lineage2.2.1 None
SRR6832644 Other lineage4.3.3;lineage4.9 None
SRR6046824 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
ERR3445487 Other La1.7.X-unk4 None
ERR363453 Other lineage4.9 None
SRR1180147 RR-TB lineage2.2.1.1 None
ERR4797184 HR-TB lineage4.9 None
SRR10808730 Other lineage4.9 None
SRR1062880 MDR-TB lineage4.6.1.2 None
SRR13861571 Sensitive lineage4.9 None
SRR16278274 Other La1.4 None
ERR9787030 RR-TB lineage6.1.2 None
ERR4817915 Other lineage4.9 None
SRR1180172 RR-TB lineage2.2.1 None
ERR216938 HR-TB La1.7;lineage4.9 None
ERR403298 MDR-TB M.canetti;lineage4.2 None
SRR1183106 RR-TB lineage2.2.1.1 None
SRR1183144 RR-TB lineage2.2.1 None
SRR6046485 Other lineage4.9 None
SRR5341469 HR-TB lineage4.9 None
SRR6046026 RR-TB lineage4.2;lineage4.9 None
ERR971389 Other lineage4.9 None
ERR1063896 HR-TB None
SRR28351339 MDR-TB lineage4 None
SRR12708416 Sensitive None
ERR6866807 RR-TB lineage4.9 None
ERR137286 Other lineage4.9 None
ERR6358979 HR-TB lineage4.9 None
ERR363449 Other lineage4.9 None
ERR736835 HR-TB La1.7;M.canetti;lineage4.9 None
SRR1140574 MDR-TB lineage4.3.3;lineage4.8 None
ERR4817998 Other lineage3 None
ERR2514327 HR-TB lineage4.8 None
ERR2513121 Sensitive lineage3.1.3 None
ERR4024991 HR-TB lineage4.8;lineage4.9 None
ERR3439432 RR-TB M.canetti;lineage4.6.4;lineage4.9 None
SRR11349145 Pre-XDR-TB lineage4.4.1.1.1 None
ERR9786911 HR-TB lineage4.1.2.1 None
SRR10808668 Other lineage2.2.1 None
ERR363421 Other lineage4.9 None
ERR9787336 RR-TB lineage6.1.3 None
SRR1049582 MDR-TB lineage4.6.1.2 None
ERR9786076 Other lineage3 None
SRR11662696 MDR-TB La1.6;La3;M.canetti;lineage4.2.2 None
SRR1159378 Other lineage4.9 None
ERR349296 Sensitive lineage4.9 None
SRR1792478 HR-TB La1.7.1 None
SRR9970980 HR-TB lineage4.1.2 None
SRR1791747 Other La1.8.1 None
ERR6866639 HR-TB lineage4.9 None
SRR3675550 RR-TB M.canetti;lineage4.2;lineage4.9 None
SRR18511647 Sensitive lineage2.2.1 None
SRR10315466 RR-TB lineage2.2.1 None
ERR4178309 Other lineage4.1.2.1 None
ERR9896144 Other lineage3 None
ERR926156 Other lineage4.9 None
ERR4872322 Pre-XDR-TB lineage2.2.1 None
SRR5341400 Sensitive lineage4.9 None
ERR6866125 Sensitive lineage4.1.2.1 None
SRR3675455 Sensitive lineage4.9 None
ERR4819314 HR-TB lineage1.1.1 None
SRR6046245 Other lineage4.9 None
ERR5311103 RR-TB La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 None
SRR6045555 Other lineage4.9 None
SRR1049676 MDR-TB lineage4.3.3;lineage4.8 None
ERR067699 HR-TB La1;lineage2;lineage4.9 None
SRR5341345 Sensitive lineage4.9 None
ERR4816762 Sensitive lineage4.9 None
ERR9787256 Other lineage6.1.3 None
ERR4818536 Other lineage4.9 None
ERR4769439 HR-TB lineage4.9 None
ERR4872269 XDR-TB lineage2.2.1 None
ERR1063855 Other lineage4.9 None
ERR1063883 HR-TB lineage4.9 None
ERR363426 Sensitive lineage4.9 None
ERR400345 Other lineage4.9 None
ERR2229198 Sensitive lineage4.8 None
SRR20969542 Other lineage4.4.2 None
SRR14801749 HR-TB lineage4.9 None
ERR349330 Sensitive lineage4.9 None
SRR7236177 Other La1.8.1 None
SRR6045219 HR-TB lineage4.9 None
ERR124636 HR-TB lineage4.9 None
ERR4821811 Sensitive lineage4.9 None
SRR12708399 MDR-TB lineage4.3.4.2.1 None
SAMN02380990 MDR-TB lineage4.6.1.2 None
SAMEA2533358 MDR-TB lineage4.1.1.3 None
ERR161039 HR-TB La3;lineage4.3.4 None
ERR4811031 Other lineage4.5 None
ERR4811030 Other lineage4.9 None
SRR5341461 HR-TB lineage4.9 None
ERR349299 Other lineage4.9 None
SRR6789624 HR-TB lineage4.1.1.3 None
SRR1175474 Other lineage4.9 None
ERR4814639 HR-TB lineage4.9 None
SRR5341323 Sensitive lineage4.9 None
ERR485006 HR-TB lineage4.9 None
ERR181744 HR-TB La3;lineage4.9 None
ERR405209 Sensitive La1.7;lineage4.9 None
ERR4769474 HR-TB lineage4.9 None
SRR12708398 Sensitive lineage4.4.1.1 None
ERR4816904 Sensitive lineage4.1.2.1 None
ERR323037 Other lineage4.9 None
SRR5341432 Other La1.7;lineage4.9;lineage7 None
SRR1172885 HR-TB lineage4.9 None
SRR14802079 MDR-TB lineage4.2.1 None
SRR12708384 Sensitive lineage4.9 None
SRR3675387 Other lineage4.9 None
SRR5341296 Sensitive lineage4.9 None
SRR10809074 HR-TB lineage4.9 None
SRR12416842 HR-TB lineage4.9 None
ERR369160 Sensitive lineage4.9 None
ERR363445 Other lineage4.9 None
ERR133825 HR-TB La1;lineage4.9 None
ERR363502 Other lineage4.9 None
ERR363509 Sensitive lineage4.9 None
SRR19295647 HR-TB lineage4.9 None
ERR4178226 Sensitive lineage4 None
SRR5341293 Sensitive lineage4.9 None
ERR4821276 Sensitive lineage3 None
SRR9970978 Other La1;lineage4.1.2 None
SRR1184329 Other lineage4.9 None
ERR4828872 RR-TB lineage4.2;lineage4.9 None
SRR12708392 Other lineage2.2.1 None
SRR6044819 Sensitive lineage4.9 None
ERR9786711 Other lineage4.6.2.2 None
ERR4798431 Other lineage4.1;lineage4.9 None
SRR8758877 MDR-TB lineage4.1.1.1 None
ERR294266 MDR-TB lineage4.2;lineage4.8.1;lineage4.9 None
ERR502889 MDR-TB La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR6045785 MDR-TB lineage4.2;lineage4.8.1;lineage4.9 None
ERR9992879 XDR-TB lineage4.3.3 None
SRR12708374 Sensitive lineage4.1;lineage4.9 None
SRR12708371 HR-TB lineage4.1.1.3 None
ERR6865513 Other lineage4.1.2.1 None
ERR6866022 HR-TB lineage4.8;lineage4.9 None
ERR4796929 Sensitive lineage4.9 None
SRR6046594 Other lineage4.9 None
ERR926155 Other lineage4.9 None
ERR363479 Other lineage4.9 None
ERR4815815 Sensitive lineage4.9 None
ERR926161 Sensitive lineage4.9 None
ERR502511 HR-TB lineage4.9 None
ERR363456 Sensitive lineage4.9 None
ERR8479578 HR-TB lineage1.1.3.1 None
ERR11252736 Other lineage4.9 None
ERR6866547 Other La1.7;lineage4.9;lineage6 None
ERR369162 Other lineage4.9 None
ERR3797029 Other lineage4.9 None
ERR4797474 Other lineage4.9 None
ERR6359074 HR-TB lineage4.9 None
ERR4818710 Sensitive lineage4.9 None
ERR4797264 HR-TB lineage4.9 None
ERR736872 HR-TB lineage4.9 None
ERR779852 HR-TB lineage4.9 None
ERR373945 Other lineage4.9 None
ERR4769530 RR-TB lineage4.9 None
ERR4831616 MDR-TB lineage2.2.1 None
SRR1175472 RR-TB lineage4.3.4.1 None
ERR4818252 HR-TB lineage4.1.1.2 None
ERR4769427 Other La1.2 None
SRR6046460 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
ERR369157 Sensitive lineage4.9 None
ERR4798099 HR-TB lineage4.9 None
ERR3275450 Other lineage4 None
ERR363499 Other lineage4.9 None
ERR369151 Other lineage4.9 None
ERR702405 HR-TB lineage4.9 None
ERR1063839 MDR-TB La2;lineage2.2 None
ERR4817204 Other lineage4.9 None
SRR9971041 MDR-TB lineage4.3.3 None
ERR926165 Other lineage4.9 None
ERR7801175 HR-TB lineage4.6.5 None
SRR3675390 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
ERR6866410 HR-TB lineage4.9 None
SRR7535082 Other lineage4.9 None
ERR363506 Sensitive lineage4.9 None
ERR926162 Sensitive lineage4.9 None
ERR926154 Sensitive lineage4.9 None
ERR245794 HR-TB lineage4.3.4.2.1 None
SRR18913742 Sensitive lineage3.1.3 None
ERR736848 Other lineage4.9 None
ERR926157 Other lineage4.9 None
ERR6359045 Other M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 None
SRR5341313 Other La1.7;lineage4.9;lineage7 None
ERR067712 Sensitive lineage4.9 None