TB-Profiler result

Run: ERR4769427
Summary

Run ID: ERR4769427

Sample name:

Date: 01-04-2023 06:40:08

Number of reads: 2175083

Percentage reads mapped: 84.36

Strain: La1.2

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
La1 M.bovis None None 1.0
La1.2 M.bovis None None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
pncA 2289073 p.His57Asp missense_variant 1.0 pyrazinamide
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5752 c.513G>A synonymous_variant 1.0
gyrA 6406 c.-896C>T upstream_gene_variant 1.0
gyrB 6446 p.Ala403Ser missense_variant 0.98
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 7710 c.409T>C synonymous_variant 0.15
gyrA 7821 c.520C>T synonymous_variant 0.93
gyrA 8285 c.984C>T synonymous_variant 1.0
gyrA 8741 c.1440C>T synonymous_variant 0.96
gyrA 9143 c.1842T>C synonymous_variant 1.0
gyrA 9281 c.1980C>G synonymous_variant 0.12
gyrA 9296 c.1995T>C synonymous_variant 0.14
gyrA 9299 c.1998G>C synonymous_variant 0.14
gyrA 9304 p.Gly668Glu missense_variant 1.0
gyrA 9323 c.2022C>G synonymous_variant 0.18
gyrA 9335 c.2034G>C synonymous_variant 0.17
gyrA 9356 c.2055G>C synonymous_variant 0.13
gyrA 9377 c.2076A>G synonymous_variant 0.13
fgd1 491310 c.528C>G synonymous_variant 0.14
fgd1 491316 c.534C>G synonymous_variant 0.14
fgd1 491742 c.960T>C synonymous_variant 0.98
rpoB 761606 c.1800C>G synonymous_variant 0.14
rpoB 761612 c.1806G>T synonymous_variant 0.14
rpoB 761615 c.1809A>C synonymous_variant 0.14
rpoB 761690 c.1884G>C synonymous_variant 0.17
rpoB 761711 c.1905C>G synonymous_variant 0.15
rpoB 761712 p.Val636Ile missense_variant 0.15
rpoB 761723 p.Glu639Asp missense_variant 0.16
rpoB 761724 p.Glu640Lys missense_variant 0.16
rpoB 761728 p.Ser641Thr missense_variant 0.16
rpoB 761744 c.1938G>A synonymous_variant 0.17
rpoB 761747 c.1941G>C synonymous_variant 0.15
rpoB 761750 c.1944G>T synonymous_variant 0.15
rpoB 761760 p.Ile652Val missense_variant 0.14
rpoB 761765 c.1959T>G synonymous_variant 0.14
rpoB 761772 p.His656Ala missense_variant 0.14
rpoB 761778 p.Asn658Asp missense_variant 0.14
rpoB 761792 c.1986T>G synonymous_variant 0.13
rpoB 761813 c.2007T>C synonymous_variant 0.14
rpoB 761814 p.Ala670Asn missense_variant 0.14
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoC 763034 c.-336C>G upstream_gene_variant 0.13
rpoC 763040 c.-330C>G upstream_gene_variant 0.13
rpoC 763053 c.-317T>C upstream_gene_variant 0.13
rpoC 763070 c.-300T>C upstream_gene_variant 0.17
rpoC 763076 c.-294C>G upstream_gene_variant 0.12
rpoC 763528 c.159G>A synonymous_variant 0.13
rpoC 763546 c.177A>G synonymous_variant 0.14
rpoC 763570 c.201G>C synonymous_variant 0.15
rpoC 763594 c.225C>T synonymous_variant 0.16
rpoC 763660 c.291T>G synonymous_variant 0.14
rpoC 763702 c.333C>G synonymous_variant 0.13
rpoC 764188 c.819A>G synonymous_variant 0.14
rpoC 764257 c.888G>C synonymous_variant 0.13
rpoC 764365 c.996C>T synonymous_variant 0.19
rpoC 764383 c.1014C>G synonymous_variant 0.15
rpoC 764387 c.1018T>C synonymous_variant 0.17
rpoC 764405 c.1036A>C synonymous_variant 0.14
rpoC 764410 c.1041G>C synonymous_variant 0.16
rpoC 764650 c.1281G>T synonymous_variant 0.14
rpoC 764791 c.1422C>G synonymous_variant 0.17
rpoC 764809 c.1440C>T synonymous_variant 0.16
rpoC 764815 c.1446A>G synonymous_variant 0.15
rpoC 764824 c.1455T>C synonymous_variant 0.15
rpoC 764878 c.1509C>G synonymous_variant 0.12
rpoC 764887 c.1518G>C synonymous_variant 0.14
rpoC 764888 c.1519T>C synonymous_variant 0.14
rpoC 764911 c.1542A>G synonymous_variant 0.12
rpoC 765826 c.2457T>C synonymous_variant 0.13
rpoC 765871 c.2502T>C synonymous_variant 0.14
rpoC 765875 p.Val836Ile missense_variant 0.2
rpoC 765904 c.2535C>G synonymous_variant 0.19
rpoC 765934 c.2565C>T synonymous_variant 0.2
rpoC 765967 c.2598C>T synonymous_variant 0.21
rpoC 765973 c.2604C>T synonymous_variant 0.21
rpoC 765979 c.2610C>G synonymous_variant 0.18
rpoC 765982 c.2613C>T synonymous_variant 0.16
rpoC 767098 c.3729T>C synonymous_variant 0.12
rpoC 767104 c.3735C>G synonymous_variant 0.13
rpoC 767119 c.3750A>G synonymous_variant 0.14
rpoC 767167 c.3798C>G synonymous_variant 0.14
rpoC 767221 c.3852C>G synonymous_variant 0.13
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781832 c.273T>G synonymous_variant 0.12
rpsL 781859 c.300T>C synonymous_variant 0.14
rpsL 781868 c.309T>C synonymous_variant 0.15
rpsL 781871 c.312G>C synonymous_variant 0.14
rpsL 781877 c.318T>A synonymous_variant 0.15
rpsL 781892 c.333A>G synonymous_variant 0.17
rpsL 781898 c.339A>C synonymous_variant 0.15
rpsL 781907 c.348T>C synonymous_variant 0.17
rpsL 781916 c.357T>G synonymous_variant 0.16
fbiC 1302899 c.-32A>G upstream_gene_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471986 n.141C>T non_coding_transcript_exon_variant 0.18
rrs 1472019 n.174G>A non_coding_transcript_exon_variant 0.18
rrs 1472028 n.183A>G non_coding_transcript_exon_variant 0.17
rrs 1472030 n.185G>A non_coding_transcript_exon_variant 0.17
rrs 1472031 n.186G>T non_coding_transcript_exon_variant 0.16
rrs 1472033 n.188A>C non_coding_transcript_exon_variant 0.16
rrs 1472040 n.195T>G non_coding_transcript_exon_variant 0.16
rrs 1472041 n.196C>T non_coding_transcript_exon_variant 0.15
rrs 1472042 n.197T>G non_coding_transcript_exon_variant 0.16
rrs 1472053 n.211_212delGC non_coding_transcript_exon_variant 0.21
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 0.22
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.24
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.19
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.25
rrs 1472286 n.441C>G non_coding_transcript_exon_variant 0.2
rrs 1472287 n.442C>T non_coding_transcript_exon_variant 0.2
rrs 1472292 n.447A>G non_coding_transcript_exon_variant 0.12
rrs 1472314 n.469A>G non_coding_transcript_exon_variant 0.13
rrs 1472315 n.470T>G non_coding_transcript_exon_variant 0.13
rrs 1472327 n.482G>A non_coding_transcript_exon_variant 0.2
rrs 1472328 n.483G>C non_coding_transcript_exon_variant 0.21
rrs 1472431 n.586G>A non_coding_transcript_exon_variant 0.15
rrs 1472438 n.593T>C non_coding_transcript_exon_variant 0.15
rrs 1472446 n.601T>A non_coding_transcript_exon_variant 0.22
rrs 1472452 n.607G>A non_coding_transcript_exon_variant 0.23
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.24
rrs 1472489 n.644A>G non_coding_transcript_exon_variant 0.24
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.18
rrs 1472683 n.838_839insTA non_coding_transcript_exon_variant 0.26
rrs 1472847 n.1002G>C non_coding_transcript_exon_variant 0.15
rrs 1472848 n.1003T>G non_coding_transcript_exon_variant 0.15
rrs 1472849 n.1004C>G non_coding_transcript_exon_variant 0.15
rrs 1472858 n.1013G>T non_coding_transcript_exon_variant 0.16
rrs 1472859 n.1014G>C non_coding_transcript_exon_variant 0.16
rrs 1472860 n.1015C>G non_coding_transcript_exon_variant 0.15
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.2
rrs 1473100 n.1255G>C non_coding_transcript_exon_variant 0.21
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.27
rrs 1473109 n.1264T>G non_coding_transcript_exon_variant 0.22
rrs 1473111 n.1266A>T non_coding_transcript_exon_variant 0.21
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.24
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.21
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.22
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.23
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.16
rrs 1473291 n.1446_1447insT non_coding_transcript_exon_variant 0.16
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.17
rrl 1473770 n.113T>G non_coding_transcript_exon_variant 0.17
rrl 1473788 n.131A>G non_coding_transcript_exon_variant 0.16
rrl 1474045 n.388C>T non_coding_transcript_exon_variant 0.15
rrl 1474054 n.397T>C non_coding_transcript_exon_variant 0.16
rrl 1474083 n.426C>T non_coding_transcript_exon_variant 0.2
rrl 1474093 n.436G>A non_coding_transcript_exon_variant 0.19
rrl 1474100 n.443C>T non_coding_transcript_exon_variant 0.16
rrl 1474103 n.446A>T non_coding_transcript_exon_variant 0.15
rrl 1474106 n.449A>G non_coding_transcript_exon_variant 0.14
rrl 1474108 n.451C>T non_coding_transcript_exon_variant 0.14
rrl 1474109 n.452A>G non_coding_transcript_exon_variant 0.15
rrl 1474110 n.453A>T non_coding_transcript_exon_variant 0.15
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.19
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.2
rrl 1474174 n.517A>G non_coding_transcript_exon_variant 0.19
rrl 1474181 n.524C>A non_coding_transcript_exon_variant 0.17
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.19
rrl 1474263 n.606G>A non_coding_transcript_exon_variant 0.19
rrl 1474284 n.629dupC non_coding_transcript_exon_variant 0.17
rrl 1474290 n.633T>C non_coding_transcript_exon_variant 0.15
rrl 1474292 n.636_644delTCCTCTCCG non_coding_transcript_exon_variant 0.16
rrl 1474303 n.646A>T non_coding_transcript_exon_variant 0.17
rrl 1474306 n.649A>T non_coding_transcript_exon_variant 0.18
rrl 1474308 n.653_654delTG non_coding_transcript_exon_variant 0.18
rrl 1474350 n.693G>C non_coding_transcript_exon_variant 0.16
rrl 1474351 n.694G>C non_coding_transcript_exon_variant 0.16
rrl 1474353 n.696A>G non_coding_transcript_exon_variant 0.12
rrl 1474356 n.699T>C non_coding_transcript_exon_variant 0.12
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.21
rrl 1474452 n.795C>G non_coding_transcript_exon_variant 0.21
rrl 1474552 n.895C>T non_coding_transcript_exon_variant 0.28
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.31
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 0.3
rrl 1474638 n.981C>A non_coding_transcript_exon_variant 0.26
rrl 1474639 n.982G>C non_coding_transcript_exon_variant 0.27
rrl 1474708 n.1052dupG non_coding_transcript_exon_variant 0.28
rrl 1474711 n.1054_1055insA non_coding_transcript_exon_variant 0.28
rrl 1474715 n.1061delA non_coding_transcript_exon_variant 0.3
rrl 1474753 n.1096A>G non_coding_transcript_exon_variant 0.4
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.4
rrl 1474794 n.1137C>A non_coding_transcript_exon_variant 0.41
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.44
rrl 1474830 n.1173A>T non_coding_transcript_exon_variant 0.32
rrl 1474831 n.1174A>T non_coding_transcript_exon_variant 0.29
rrl 1475031 n.1374G>T non_coding_transcript_exon_variant 0.16
rrl 1475061 n.1404C>T non_coding_transcript_exon_variant 0.27
rrl 1475062 n.1405A>G non_coding_transcript_exon_variant 0.15
rrl 1475120 n.1463G>T non_coding_transcript_exon_variant 0.25
rrl 1475355 n.1698C>T non_coding_transcript_exon_variant 0.13
rrl 1475369 n.1712G>C non_coding_transcript_exon_variant 0.14
rrl 1475379 n.1722G>C non_coding_transcript_exon_variant 0.12
rrl 1475419 n.1762C>T non_coding_transcript_exon_variant 0.16
rrl 1475429 n.1772G>A non_coding_transcript_exon_variant 0.2
rrl 1475452 n.1795C>A non_coding_transcript_exon_variant 0.21
rrl 1475460 n.1803A>G non_coding_transcript_exon_variant 0.2
rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 0.16
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.15
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 0.16
rrl 1475753 n.2096C>G non_coding_transcript_exon_variant 0.16
rrl 1475762 n.2105G>T non_coding_transcript_exon_variant 0.17
rrl 1475763 n.2106C>T non_coding_transcript_exon_variant 0.18
rrl 1475764 n.2107A>C non_coding_transcript_exon_variant 0.19
rrl 1475765 n.2108A>G non_coding_transcript_exon_variant 0.18
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.18
rrl 1475916 n.2259C>T non_coding_transcript_exon_variant 0.25
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.17
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.18
rrl 1475995 n.2338G>A non_coding_transcript_exon_variant 0.21
rrl 1475997 n.2340A>G non_coding_transcript_exon_variant 0.18
rrl 1476033 n.2376T>C non_coding_transcript_exon_variant 0.17
rrl 1476034 n.2377C>G non_coding_transcript_exon_variant 0.16
rrl 1476035 n.2378G>C non_coding_transcript_exon_variant 0.19
rrl 1476044 n.2387T>G non_coding_transcript_exon_variant 0.2
rrl 1476045 n.2388G>T non_coding_transcript_exon_variant 0.16
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.2
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 0.19
rrl 1476088 n.2431A>C non_coding_transcript_exon_variant 0.27
rrl 1476095 n.2438C>T non_coding_transcript_exon_variant 0.19
rrl 1476103 n.2446C>A non_coding_transcript_exon_variant 0.19
rrl 1476108 n.2451T>G non_coding_transcript_exon_variant 0.18
rrl 1476110 n.2453G>T non_coding_transcript_exon_variant 0.18
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.26
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.2
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.3
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.3
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.32
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.27
rrl 1476246 n.2589G>A non_coding_transcript_exon_variant 0.26
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.27
rrl 1476256 n.2599A>C non_coding_transcript_exon_variant 0.28
rrl 1476262 n.2605G>A non_coding_transcript_exon_variant 0.27
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.35
rrl 1476529 n.2872A>T non_coding_transcript_exon_variant 0.32
rrl 1476583 n.2926G>A non_coding_transcript_exon_variant 0.35
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.28
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 0.28
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.33
rrl 1476603 n.2946G>A non_coding_transcript_exon_variant 0.27
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.25
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.24
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.29
rrl 1476665 n.3008T>A non_coding_transcript_exon_variant 0.13
rrl 1476674 n.3017T>C non_coding_transcript_exon_variant 0.14
rrl 1476679 n.3022T>A non_coding_transcript_exon_variant 0.14
inhA 1674703 c.502T>C synonymous_variant 0.14
rpsA 1833709 c.168C>T synonymous_variant 0.14
rpsA 1833724 c.183C>T synonymous_variant 0.14
rpsA 1833727 c.186G>C synonymous_variant 0.14
rpsA 1833734 p.Ala65Ser missense_variant 0.14
rpsA 1833770 p.Asn77His missense_variant 0.16
rpsA 1833778 c.237C>G synonymous_variant 0.15
rpsA 1833811 c.270G>C synonymous_variant 0.13
rpsA 1833838 c.297G>C synonymous_variant 0.15
rpsA 1833841 c.300C>G synonymous_variant 0.14
rpsA 1833847 c.306C>G synonymous_variant 0.15
rpsA 1833856 c.315A>G synonymous_variant 0.14
rpsA 1833862 c.321G>C synonymous_variant 0.13
rpsA 1833874 c.333T>C synonymous_variant 0.16
rpsA 1833928 c.387G>C synonymous_variant 0.15
rpsA 1833949 c.408T>C synonymous_variant 0.14
rpsA 1833979 c.438T>C synonymous_variant 0.14
rpsA 1833988 c.447C>G synonymous_variant 0.14
rpsA 1834015 c.474G>C synonymous_variant 0.15
rpsA 1834105 c.564C>T synonymous_variant 0.15
rpsA 1834222 c.681T>C synonymous_variant 0.13
rpsA 1834225 c.684C>G synonymous_variant 0.14
rpsA 1834240 c.699T>C synonymous_variant 0.13
rpsA 1834303 c.762T>G synonymous_variant 0.13
rpsA 1834306 c.765T>C synonymous_variant 0.14
rpsA 1834348 c.807T>C synonymous_variant 0.13
rpsA 1834543 c.1002C>G synonymous_variant 0.13
rpsA 1834859 p.Ala440Thr missense_variant 1.0
tlyA 1917972 c.33A>G synonymous_variant 1.0
ndh 2102106 p.Gly313Arg missense_variant 1.0
ndh 2103173 c.-132delG upstream_gene_variant 1.0
katG 2154724 p.Arg463Leu missense_variant 1.0
katG 2155503 c.609C>T synonymous_variant 1.0
katG 2156025 c.87C>A synonymous_variant 1.0
katG 2156465 c.-354C>T upstream_gene_variant 1.0
PPE35 2167926 p.Leu896Ser missense_variant 1.0
PPE35 2168011 p.Ser868Arg missense_variant 1.0
PPE35 2168814 c.1798dupA frameshift_variant 1.0
Rv1979c 2222308 p.Asp286Gly missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2517917 c.-198G>T upstream_gene_variant 0.18
kasA 2517941 c.-174C>G upstream_gene_variant 0.16
kasA 2518132 c.18C>T synonymous_variant 1.0
Rv2752c 3065888 p.Val102Ile missense_variant 0.98
thyX 3067786 p.Thr54Ala missense_variant 0.96
ald 3086728 c.-92C>T upstream_gene_variant 0.99
ald 3086788 c.-32T>C upstream_gene_variant 1.0
ald 3087084 c.266delA frameshift_variant 1.0
fbiD 3339154 p.Ile13Leu missense_variant 1.0
Rv3083 3448745 p.Ile81Ser missense_variant 1.0
Rv3083 3448783 p.Val94Ile missense_variant 1.0
fprA 3473891 c.-116A>C upstream_gene_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
fprA 3474427 p.Val141Ile missense_variant 1.0
fprA 3475159 p.Asn385Asp missense_variant 1.0
rpoA 3877613 p.Ile299Val missense_variant 0.14
rpoA 3877737 c.771G>C synonymous_variant 0.15
rpoA 3877743 c.765T>C synonymous_variant 0.16
rpoA 3877764 c.744C>G synonymous_variant 0.16
rpoA 3877770 c.738A>G synonymous_variant 0.17
rpoA 3877776 c.732T>C synonymous_variant 0.17
rpoA 3877782 c.726T>C synonymous_variant 0.19
rpoA 3877785 c.723C>G synonymous_variant 0.19
rpoA 3877827 c.681C>G synonymous_variant 0.15
rpoA 3877836 c.672A>G synonymous_variant 0.14
rpoA 3877842 c.666A>G synonymous_variant 0.14
rpoA 3877848 c.660C>T synonymous_variant 0.17
rpoA 3877856 c.652T>C synonymous_variant 0.16
rpoA 3877866 c.642G>C synonymous_variant 0.17
rpoA 3877872 c.636C>T synonymous_variant 0.16
rpoA 3877875 c.633T>C synonymous_variant 0.16
rpoA 3877908 c.600T>C synonymous_variant 0.13
rpoA 3878160 c.348C>G synonymous_variant 0.14
rpoA 3878193 c.315T>C synonymous_variant 0.15
rpoA 3878217 c.291A>G synonymous_variant 0.15
rpoA 3878247 c.261G>C synonymous_variant 0.16
rpoA 3878253 c.255G>C synonymous_variant 0.14
rpoA 3878264 p.Ser82Gly missense_variant 0.13
rpoA 3878310 c.198G>C synonymous_variant 0.15
rpoA 3878322 c.186A>G synonymous_variant 0.14
rpoA 3878331 c.177A>G synonymous_variant 0.14
rpoA 3878346 c.162T>C synonymous_variant 0.15
rpoA 3878358 c.150C>G synonymous_variant 0.15
rpoA 3878364 c.144A>C synonymous_variant 0.17
rpoA 3878394 c.114G>T synonymous_variant 0.17
rpoA 3878400 c.108T>C synonymous_variant 0.17
rpoA 3878415 c.93C>T synonymous_variant 0.15
rpoA 3878442 c.66G>C synonymous_variant 0.15
rpoA 3878630 c.-124delC upstream_gene_variant 1.0
clpC1 4038403 c.2302T>C synonymous_variant 1.0
clpC1 4039481 c.1224T>C synonymous_variant 0.14
clpC1 4039484 c.1221T>A synonymous_variant 0.14
clpC1 4039487 c.1218G>C synonymous_variant 0.13
clpC1 4039517 c.1188C>G synonymous_variant 0.17
clpC1 4039556 c.1149G>C synonymous_variant 0.15
clpC1 4039559 c.1146C>A synonymous_variant 0.16
clpC1 4039562 c.1143C>G synonymous_variant 0.16
clpC1 4039568 p.Met379Ile missense_variant 0.15
embC 4240671 p.Thr270Ile missense_variant 0.98
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4242970 c.-263C>T upstream_gene_variant 1.0
embA 4244220 c.988C>T synonymous_variant 1.0
embB 4246551 p.Asn13Ser missense_variant 1.0
embB 4246864 c.351C>T synonymous_variant 1.0
embB 4247173 c.660G>A synonymous_variant 1.0
embB 4247646 p.Glu378Ala missense_variant 1.0
aftB 4267858 p.Ile327Val missense_variant 1.0
aftB 4269351 c.-515C>T upstream_gene_variant 1.0
ubiA 4269387 p.Glu149Asp missense_variant 1.0
aftB 4269606 c.-770T>C upstream_gene_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0
gid 4407743 p.Arg154Trp missense_variant 0.99