Run ID: ERR4769427
Sample name:
Date: 01-04-2023 06:40:08
Number of reads: 2175083
Percentage reads mapped: 84.36
Strain: La1.2
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
La1 | M.bovis | None | None | 1.0 |
La1.2 | M.bovis | None | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
pncA | 2289073 | p.His57Asp | missense_variant | 1.0 | pyrazinamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5752 | c.513G>A | synonymous_variant | 1.0 |
gyrA | 6406 | c.-896C>T | upstream_gene_variant | 1.0 |
gyrB | 6446 | p.Ala403Ser | missense_variant | 0.98 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7710 | c.409T>C | synonymous_variant | 0.15 |
gyrA | 7821 | c.520C>T | synonymous_variant | 0.93 |
gyrA | 8285 | c.984C>T | synonymous_variant | 1.0 |
gyrA | 8741 | c.1440C>T | synonymous_variant | 0.96 |
gyrA | 9143 | c.1842T>C | synonymous_variant | 1.0 |
gyrA | 9281 | c.1980C>G | synonymous_variant | 0.12 |
gyrA | 9296 | c.1995T>C | synonymous_variant | 0.14 |
gyrA | 9299 | c.1998G>C | synonymous_variant | 0.14 |
gyrA | 9304 | p.Gly668Glu | missense_variant | 1.0 |
gyrA | 9323 | c.2022C>G | synonymous_variant | 0.18 |
gyrA | 9335 | c.2034G>C | synonymous_variant | 0.17 |
gyrA | 9356 | c.2055G>C | synonymous_variant | 0.13 |
gyrA | 9377 | c.2076A>G | synonymous_variant | 0.13 |
fgd1 | 491310 | c.528C>G | synonymous_variant | 0.14 |
fgd1 | 491316 | c.534C>G | synonymous_variant | 0.14 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 0.98 |
rpoB | 761606 | c.1800C>G | synonymous_variant | 0.14 |
rpoB | 761612 | c.1806G>T | synonymous_variant | 0.14 |
rpoB | 761615 | c.1809A>C | synonymous_variant | 0.14 |
rpoB | 761690 | c.1884G>C | synonymous_variant | 0.17 |
rpoB | 761711 | c.1905C>G | synonymous_variant | 0.15 |
rpoB | 761712 | p.Val636Ile | missense_variant | 0.15 |
rpoB | 761723 | p.Glu639Asp | missense_variant | 0.16 |
rpoB | 761724 | p.Glu640Lys | missense_variant | 0.16 |
rpoB | 761728 | p.Ser641Thr | missense_variant | 0.16 |
rpoB | 761744 | c.1938G>A | synonymous_variant | 0.17 |
rpoB | 761747 | c.1941G>C | synonymous_variant | 0.15 |
rpoB | 761750 | c.1944G>T | synonymous_variant | 0.15 |
rpoB | 761760 | p.Ile652Val | missense_variant | 0.14 |
rpoB | 761765 | c.1959T>G | synonymous_variant | 0.14 |
rpoB | 761772 | p.His656Ala | missense_variant | 0.14 |
rpoB | 761778 | p.Asn658Asp | missense_variant | 0.14 |
rpoB | 761792 | c.1986T>G | synonymous_variant | 0.13 |
rpoB | 761813 | c.2007T>C | synonymous_variant | 0.14 |
rpoB | 761814 | p.Ala670Asn | missense_variant | 0.14 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 763034 | c.-336C>G | upstream_gene_variant | 0.13 |
rpoC | 763040 | c.-330C>G | upstream_gene_variant | 0.13 |
rpoC | 763053 | c.-317T>C | upstream_gene_variant | 0.13 |
rpoC | 763070 | c.-300T>C | upstream_gene_variant | 0.17 |
rpoC | 763076 | c.-294C>G | upstream_gene_variant | 0.12 |
rpoC | 763528 | c.159G>A | synonymous_variant | 0.13 |
rpoC | 763546 | c.177A>G | synonymous_variant | 0.14 |
rpoC | 763570 | c.201G>C | synonymous_variant | 0.15 |
rpoC | 763594 | c.225C>T | synonymous_variant | 0.16 |
rpoC | 763660 | c.291T>G | synonymous_variant | 0.14 |
rpoC | 763702 | c.333C>G | synonymous_variant | 0.13 |
rpoC | 764188 | c.819A>G | synonymous_variant | 0.14 |
rpoC | 764257 | c.888G>C | synonymous_variant | 0.13 |
rpoC | 764365 | c.996C>T | synonymous_variant | 0.19 |
rpoC | 764383 | c.1014C>G | synonymous_variant | 0.15 |
rpoC | 764387 | c.1018T>C | synonymous_variant | 0.17 |
rpoC | 764405 | c.1036A>C | synonymous_variant | 0.14 |
rpoC | 764410 | c.1041G>C | synonymous_variant | 0.16 |
rpoC | 764650 | c.1281G>T | synonymous_variant | 0.14 |
rpoC | 764791 | c.1422C>G | synonymous_variant | 0.17 |
rpoC | 764809 | c.1440C>T | synonymous_variant | 0.16 |
rpoC | 764815 | c.1446A>G | synonymous_variant | 0.15 |
rpoC | 764824 | c.1455T>C | synonymous_variant | 0.15 |
rpoC | 764878 | c.1509C>G | synonymous_variant | 0.12 |
rpoC | 764887 | c.1518G>C | synonymous_variant | 0.14 |
rpoC | 764888 | c.1519T>C | synonymous_variant | 0.14 |
rpoC | 764911 | c.1542A>G | synonymous_variant | 0.12 |
rpoC | 765826 | c.2457T>C | synonymous_variant | 0.13 |
rpoC | 765871 | c.2502T>C | synonymous_variant | 0.14 |
rpoC | 765875 | p.Val836Ile | missense_variant | 0.2 |
rpoC | 765904 | c.2535C>G | synonymous_variant | 0.19 |
rpoC | 765934 | c.2565C>T | synonymous_variant | 0.2 |
rpoC | 765967 | c.2598C>T | synonymous_variant | 0.21 |
rpoC | 765973 | c.2604C>T | synonymous_variant | 0.21 |
rpoC | 765979 | c.2610C>G | synonymous_variant | 0.18 |
rpoC | 765982 | c.2613C>T | synonymous_variant | 0.16 |
rpoC | 767098 | c.3729T>C | synonymous_variant | 0.12 |
rpoC | 767104 | c.3735C>G | synonymous_variant | 0.13 |
rpoC | 767119 | c.3750A>G | synonymous_variant | 0.14 |
rpoC | 767167 | c.3798C>G | synonymous_variant | 0.14 |
rpoC | 767221 | c.3852C>G | synonymous_variant | 0.13 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781832 | c.273T>G | synonymous_variant | 0.12 |
rpsL | 781859 | c.300T>C | synonymous_variant | 0.14 |
rpsL | 781868 | c.309T>C | synonymous_variant | 0.15 |
rpsL | 781871 | c.312G>C | synonymous_variant | 0.14 |
rpsL | 781877 | c.318T>A | synonymous_variant | 0.15 |
rpsL | 781892 | c.333A>G | synonymous_variant | 0.17 |
rpsL | 781898 | c.339A>C | synonymous_variant | 0.15 |
rpsL | 781907 | c.348T>C | synonymous_variant | 0.17 |
rpsL | 781916 | c.357T>G | synonymous_variant | 0.16 |
fbiC | 1302899 | c.-32A>G | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1471986 | n.141C>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472019 | n.174G>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472028 | n.183A>G | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472030 | n.185G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472031 | n.186G>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472033 | n.188A>C | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472040 | n.195T>G | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472041 | n.196C>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472042 | n.197T>G | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472053 | n.211_212delGC | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472061 | n.216A>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472075 | n.230A>G | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472108 | n.263C>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472286 | n.441C>G | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472287 | n.442C>T | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472292 | n.447A>G | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472314 | n.469A>G | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472315 | n.470T>G | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472327 | n.482G>A | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472328 | n.483G>C | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472431 | n.586G>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472438 | n.593T>C | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472446 | n.601T>A | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472452 | n.607G>A | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472464 | n.619A>G | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472489 | n.644A>G | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472498 | n.653C>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472683 | n.838_839insTA | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472847 | n.1002G>C | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472848 | n.1003T>G | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472849 | n.1004C>G | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472858 | n.1013G>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472859 | n.1014G>C | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472860 | n.1015C>G | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472973 | n.1128A>T | non_coding_transcript_exon_variant | 0.2 |
rrs | 1473100 | n.1255G>C | non_coding_transcript_exon_variant | 0.21 |
rrs | 1473104 | n.1259C>T | non_coding_transcript_exon_variant | 0.27 |
rrs | 1473109 | n.1264T>G | non_coding_transcript_exon_variant | 0.22 |
rrs | 1473111 | n.1266A>T | non_coding_transcript_exon_variant | 0.21 |
rrs | 1473123 | n.1278A>T | non_coding_transcript_exon_variant | 0.24 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.21 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.22 |
rrs | 1473276 | n.1431A>G | non_coding_transcript_exon_variant | 0.23 |
rrs | 1473290 | n.1445C>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1473291 | n.1446_1447insT | non_coding_transcript_exon_variant | 0.16 |
rrs | 1473301 | n.1456T>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1473770 | n.113T>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1473788 | n.131A>G | non_coding_transcript_exon_variant | 0.16 |
rrl | 1474045 | n.388C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474054 | n.397T>C | non_coding_transcript_exon_variant | 0.16 |
rrl | 1474083 | n.426C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474093 | n.436G>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474100 | n.443C>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1474103 | n.446A>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474106 | n.449A>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474108 | n.451C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474109 | n.452A>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474110 | n.453A>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474140 | n.483C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474151 | n.494C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474174 | n.517A>G | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474181 | n.524C>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474249 | n.592G>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474263 | n.606G>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474284 | n.629dupC | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474290 | n.633T>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474292 | n.636_644delTCCTCTCCG | non_coding_transcript_exon_variant | 0.16 |
rrl | 1474303 | n.646A>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474306 | n.649A>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474308 | n.653_654delTG | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474350 | n.693G>C | non_coding_transcript_exon_variant | 0.16 |
rrl | 1474351 | n.694G>C | non_coding_transcript_exon_variant | 0.16 |
rrl | 1474353 | n.696A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474356 | n.699T>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474362 | n.705A>G | non_coding_transcript_exon_variant | 0.21 |
rrl | 1474452 | n.795C>G | non_coding_transcript_exon_variant | 0.21 |
rrl | 1474552 | n.895C>T | non_coding_transcript_exon_variant | 0.28 |
rrl | 1474632 | n.975G>T | non_coding_transcript_exon_variant | 0.31 |
rrl | 1474636 | n.979A>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1474638 | n.981C>A | non_coding_transcript_exon_variant | 0.26 |
rrl | 1474639 | n.982G>C | non_coding_transcript_exon_variant | 0.27 |
rrl | 1474708 | n.1052dupG | non_coding_transcript_exon_variant | 0.28 |
rrl | 1474711 | n.1054_1055insA | non_coding_transcript_exon_variant | 0.28 |
rrl | 1474715 | n.1061delA | non_coding_transcript_exon_variant | 0.3 |
rrl | 1474753 | n.1096A>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474760 | n.1103A>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474794 | n.1137C>A | non_coding_transcript_exon_variant | 0.41 |
rrl | 1474812 | n.1155G>A | non_coding_transcript_exon_variant | 0.44 |
rrl | 1474830 | n.1173A>T | non_coding_transcript_exon_variant | 0.32 |
rrl | 1474831 | n.1174A>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1475031 | n.1374G>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1475061 | n.1404C>T | non_coding_transcript_exon_variant | 0.27 |
rrl | 1475062 | n.1405A>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475120 | n.1463G>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475355 | n.1698C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475369 | n.1712G>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475379 | n.1722G>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475419 | n.1762C>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1475429 | n.1772G>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475452 | n.1795C>A | non_coding_transcript_exon_variant | 0.21 |
rrl | 1475460 | n.1803A>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475505 | n.1848G>A | non_coding_transcript_exon_variant | 0.16 |
rrl | 1475526 | n.1869C>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475659 | n.2002G>A | non_coding_transcript_exon_variant | 0.16 |
rrl | 1475753 | n.2096C>G | non_coding_transcript_exon_variant | 0.16 |
rrl | 1475762 | n.2105G>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475763 | n.2106C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475764 | n.2107A>C | non_coding_transcript_exon_variant | 0.19 |
rrl | 1475765 | n.2108A>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475775 | n.2118G>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475916 | n.2259C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475975 | n.2318C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475977 | n.2320A>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475995 | n.2338G>A | non_coding_transcript_exon_variant | 0.21 |
rrl | 1475997 | n.2340A>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476033 | n.2376T>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476034 | n.2377C>G | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476035 | n.2378G>C | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476044 | n.2387T>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476045 | n.2388G>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476049 | n.2392C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476086 | n.2429G>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476088 | n.2431A>C | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476095 | n.2438C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476103 | n.2446C>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476108 | n.2451T>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476110 | n.2453G>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476115 | n.2458T>C | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476131 | n.2474C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476214 | n.2557G>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476215 | n.2558C>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476224 | n.2567A>G | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476245 | n.2588C>T | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476246 | n.2589G>A | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476252 | n.2595T>G | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476256 | n.2599A>C | non_coding_transcript_exon_variant | 0.28 |
rrl | 1476262 | n.2605G>A | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476281 | n.2624T>C | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476529 | n.2872A>T | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476583 | n.2926G>A | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.28 |
rrl | 1476594 | n.2937C>T | non_coding_transcript_exon_variant | 0.28 |
rrl | 1476597 | n.2940G>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476603 | n.2946G>A | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476608 | n.2951C>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476619 | n.2962C>T | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476628 | n.2971T>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476665 | n.3008T>A | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476674 | n.3017T>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476679 | n.3022T>A | non_coding_transcript_exon_variant | 0.14 |
inhA | 1674703 | c.502T>C | synonymous_variant | 0.14 |
rpsA | 1833709 | c.168C>T | synonymous_variant | 0.14 |
rpsA | 1833724 | c.183C>T | synonymous_variant | 0.14 |
rpsA | 1833727 | c.186G>C | synonymous_variant | 0.14 |
rpsA | 1833734 | p.Ala65Ser | missense_variant | 0.14 |
rpsA | 1833770 | p.Asn77His | missense_variant | 0.16 |
rpsA | 1833778 | c.237C>G | synonymous_variant | 0.15 |
rpsA | 1833811 | c.270G>C | synonymous_variant | 0.13 |
rpsA | 1833838 | c.297G>C | synonymous_variant | 0.15 |
rpsA | 1833841 | c.300C>G | synonymous_variant | 0.14 |
rpsA | 1833847 | c.306C>G | synonymous_variant | 0.15 |
rpsA | 1833856 | c.315A>G | synonymous_variant | 0.14 |
rpsA | 1833862 | c.321G>C | synonymous_variant | 0.13 |
rpsA | 1833874 | c.333T>C | synonymous_variant | 0.16 |
rpsA | 1833928 | c.387G>C | synonymous_variant | 0.15 |
rpsA | 1833949 | c.408T>C | synonymous_variant | 0.14 |
rpsA | 1833979 | c.438T>C | synonymous_variant | 0.14 |
rpsA | 1833988 | c.447C>G | synonymous_variant | 0.14 |
rpsA | 1834015 | c.474G>C | synonymous_variant | 0.15 |
rpsA | 1834105 | c.564C>T | synonymous_variant | 0.15 |
rpsA | 1834222 | c.681T>C | synonymous_variant | 0.13 |
rpsA | 1834225 | c.684C>G | synonymous_variant | 0.14 |
rpsA | 1834240 | c.699T>C | synonymous_variant | 0.13 |
rpsA | 1834303 | c.762T>G | synonymous_variant | 0.13 |
rpsA | 1834306 | c.765T>C | synonymous_variant | 0.14 |
rpsA | 1834348 | c.807T>C | synonymous_variant | 0.13 |
rpsA | 1834543 | c.1002C>G | synonymous_variant | 0.13 |
rpsA | 1834859 | p.Ala440Thr | missense_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102106 | p.Gly313Arg | missense_variant | 1.0 |
ndh | 2103173 | c.-132delG | upstream_gene_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
katG | 2155503 | c.609C>T | synonymous_variant | 1.0 |
katG | 2156025 | c.87C>A | synonymous_variant | 1.0 |
katG | 2156465 | c.-354C>T | upstream_gene_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2168011 | p.Ser868Arg | missense_variant | 1.0 |
PPE35 | 2168814 | c.1798dupA | frameshift_variant | 1.0 |
Rv1979c | 2222308 | p.Asp286Gly | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2517917 | c.-198G>T | upstream_gene_variant | 0.18 |
kasA | 2517941 | c.-174C>G | upstream_gene_variant | 0.16 |
kasA | 2518132 | c.18C>T | synonymous_variant | 1.0 |
Rv2752c | 3065888 | p.Val102Ile | missense_variant | 0.98 |
thyX | 3067786 | p.Thr54Ala | missense_variant | 0.96 |
ald | 3086728 | c.-92C>T | upstream_gene_variant | 0.99 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087084 | c.266delA | frameshift_variant | 1.0 |
fbiD | 3339154 | p.Ile13Leu | missense_variant | 1.0 |
Rv3083 | 3448745 | p.Ile81Ser | missense_variant | 1.0 |
Rv3083 | 3448783 | p.Val94Ile | missense_variant | 1.0 |
fprA | 3473891 | c.-116A>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474427 | p.Val141Ile | missense_variant | 1.0 |
fprA | 3475159 | p.Asn385Asp | missense_variant | 1.0 |
rpoA | 3877613 | p.Ile299Val | missense_variant | 0.14 |
rpoA | 3877737 | c.771G>C | synonymous_variant | 0.15 |
rpoA | 3877743 | c.765T>C | synonymous_variant | 0.16 |
rpoA | 3877764 | c.744C>G | synonymous_variant | 0.16 |
rpoA | 3877770 | c.738A>G | synonymous_variant | 0.17 |
rpoA | 3877776 | c.732T>C | synonymous_variant | 0.17 |
rpoA | 3877782 | c.726T>C | synonymous_variant | 0.19 |
rpoA | 3877785 | c.723C>G | synonymous_variant | 0.19 |
rpoA | 3877827 | c.681C>G | synonymous_variant | 0.15 |
rpoA | 3877836 | c.672A>G | synonymous_variant | 0.14 |
rpoA | 3877842 | c.666A>G | synonymous_variant | 0.14 |
rpoA | 3877848 | c.660C>T | synonymous_variant | 0.17 |
rpoA | 3877856 | c.652T>C | synonymous_variant | 0.16 |
rpoA | 3877866 | c.642G>C | synonymous_variant | 0.17 |
rpoA | 3877872 | c.636C>T | synonymous_variant | 0.16 |
rpoA | 3877875 | c.633T>C | synonymous_variant | 0.16 |
rpoA | 3877908 | c.600T>C | synonymous_variant | 0.13 |
rpoA | 3878160 | c.348C>G | synonymous_variant | 0.14 |
rpoA | 3878193 | c.315T>C | synonymous_variant | 0.15 |
rpoA | 3878217 | c.291A>G | synonymous_variant | 0.15 |
rpoA | 3878247 | c.261G>C | synonymous_variant | 0.16 |
rpoA | 3878253 | c.255G>C | synonymous_variant | 0.14 |
rpoA | 3878264 | p.Ser82Gly | missense_variant | 0.13 |
rpoA | 3878310 | c.198G>C | synonymous_variant | 0.15 |
rpoA | 3878322 | c.186A>G | synonymous_variant | 0.14 |
rpoA | 3878331 | c.177A>G | synonymous_variant | 0.14 |
rpoA | 3878346 | c.162T>C | synonymous_variant | 0.15 |
rpoA | 3878358 | c.150C>G | synonymous_variant | 0.15 |
rpoA | 3878364 | c.144A>C | synonymous_variant | 0.17 |
rpoA | 3878394 | c.114G>T | synonymous_variant | 0.17 |
rpoA | 3878400 | c.108T>C | synonymous_variant | 0.17 |
rpoA | 3878415 | c.93C>T | synonymous_variant | 0.15 |
rpoA | 3878442 | c.66G>C | synonymous_variant | 0.15 |
rpoA | 3878630 | c.-124delC | upstream_gene_variant | 1.0 |
clpC1 | 4038403 | c.2302T>C | synonymous_variant | 1.0 |
clpC1 | 4039481 | c.1224T>C | synonymous_variant | 0.14 |
clpC1 | 4039484 | c.1221T>A | synonymous_variant | 0.14 |
clpC1 | 4039487 | c.1218G>C | synonymous_variant | 0.13 |
clpC1 | 4039517 | c.1188C>G | synonymous_variant | 0.17 |
clpC1 | 4039556 | c.1149G>C | synonymous_variant | 0.15 |
clpC1 | 4039559 | c.1146C>A | synonymous_variant | 0.16 |
clpC1 | 4039562 | c.1143C>G | synonymous_variant | 0.16 |
clpC1 | 4039568 | p.Met379Ile | missense_variant | 0.15 |
embC | 4240671 | p.Thr270Ile | missense_variant | 0.98 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4242970 | c.-263C>T | upstream_gene_variant | 1.0 |
embA | 4244220 | c.988C>T | synonymous_variant | 1.0 |
embB | 4246551 | p.Asn13Ser | missense_variant | 1.0 |
embB | 4246864 | c.351C>T | synonymous_variant | 1.0 |
embB | 4247173 | c.660G>A | synonymous_variant | 1.0 |
embB | 4247646 | p.Glu378Ala | missense_variant | 1.0 |
aftB | 4267858 | p.Ile327Val | missense_variant | 1.0 |
aftB | 4269351 | c.-515C>T | upstream_gene_variant | 1.0 |
ubiA | 4269387 | p.Glu149Asp | missense_variant | 1.0 |
aftB | 4269606 | c.-770T>C | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407743 | p.Arg154Trp | missense_variant | 0.99 |