Rv0668 - c.1014C>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
22 Sensitive
9 RR-TB
92 HR-TB
19 MDR-TB
16 Pre-XDR-TB
3 XDR-TB
64 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9;lineage7 | 4 |
| lineage4.9 | 61 |
| lineage6.1.3 | 1 |
| La1.7;lineage4.9 | 7 |
| lineage2.2.1.1;lineage4 | 1 |
| lineage2.2.1 | 37 |
| 3 | |
| lineage3 | 6 |
| M.canetti;lineage2.2 | 2 |
| lineage2.2.2 | 18 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| La3;lineage4.9 | 6 |
| lineage4.9;lineage6.1.3 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| lineage2.2.2;lineage4 | 5 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage4.3.4.2.1 | 1 |
| M.canetti;lineage4.9 | 2 |
| lineage1;lineage4.9 | 1 |
| lineage2.2;lineage4 | 2 |
| lineage4.6.1.2 | 4 |
| lineage4.4.1.2 | 1 |
| lineage2.2.1.1 | 2 |
| lineage4.5 | 4 |
| lineage4 | 5 |
| lineage4.7 | 1 |
| lineage2.2.1;lineage4 | 4 |
| lineage4.4.2 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| lineage4.6.1.1 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage2.2.1;lineage2.2.2 | 4 |
| La1.7 | 2 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.3.4 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| lineage2;lineage4.9 | 2 |
| La2;lineage4.9 | 1 |
| lineage4.3.2.1 | 1 |
| lineage3.1.2.1 | 1 |
| La1.2 | 2 |
| lineage4.1 | 1 |
| lineage4.6.2.2 | 2 |
| La1.7.1;lineage4.9 | 1 |
| lineage2.2;lineage4.9 | 1 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage4.2;lineage4.9 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| La2;lineage2.2 | 1 |
| lineage2.2 | 1 |
| lineage4.1.1.3 | 2 |
| lineage2.1;lineage4.9 | 1 |
| lineage2 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage4.1.2.1 | 1 |
| lineage2.2.2;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 225 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR1023236 | Other | lineage6.1.3 | None | ERR1034634 | HR-TB | lineage4.9 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | ERR4769452 | Other | lineage4.9 | None | SRR1013599 | HR-TB | lineage2.2.1.1;lineage4 | None | SRR29017081 | Sensitive | lineage4.9 | None | SRR1048966 | MDR-TB | lineage2.2.1 | None | ERR9786843 | Other | None | ERR212033 | Other | lineage4.9 | None | SRR1048981 | HR-TB | lineage3 | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | SRR1049007 | HR-TB | lineage2.2.2 | None | SRR1181256 | Other | lineage4.9 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR4819422 | HR-TB | lineage4.9 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR6046878 | Other | lineage4.9 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | SRR3675270 | Other | lineage4.9 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR1013598 | Sensitive | lineage2.2.2;lineage4 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | SRR1165628 | Other | La3;lineage4.9 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | SRR1013553 | MDR-TB | lineage2.2.2 | None | SRR1169306 | Other | La3;lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | SRR1047996 | MDR-TB | lineage2.2.2 | None | SRR1048868 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048885 | HR-TB | lineage2.2;lineage4 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR11662694 | Other | lineage4.9 | None | SRR1013607 | HR-TB | lineage2.2.2 | None | ERR6359074 | HR-TB | lineage4.9 | None | SRR1013569 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02360579 | HR-TB | lineage2.2.1.1 | None | SAMN02360570 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02360574 | HR-TB | lineage2.2.1 | None | SAMN02360581 | HR-TB | lineage2.2.1 | None | SAMN02360585 | HR-TB | lineage4.5 | None | SAMN02360580 | HR-TB | lineage2.2.1 | None | SAMN02360577 | HR-TB | lineage3 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | SRR1013584 | HR-TB | lineage2.2.2 | None | ERR9786525 | Other | lineage4 | None | ERR4815441 | HR-TB | lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR990545 | Other | lineage3 | None | SRR1013608 | Sensitive | lineage2.2.2 | None | ERR9786507 | RR-TB | lineage4.7 | None | ERR176779 | HR-TB | lineage4.9 | None | SRR1013603 | HR-TB | lineage2.2.1 | None | SRR1048975 | HR-TB | lineage2.2.1 | None | ERR4596910 | Sensitive | lineage4.9 | None | ERR4817731 | HR-TB | lineage4.9 | None | ERR4816478 | HR-TB | lineage4 | None | SRR15315797 | RR-TB | lineage2.2.1;lineage4 | None | SRR18511647 | Sensitive | lineage2.2.1 | None | SRR20969542 | Other | lineage4.4.2 | None | ERR176643 | Other | La3;lineage4.9 | None | SRR1013610 | Sensitive | lineage4 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR4816656 | Other | lineage4.9 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | SRR1180446 | Other | lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR1047993 | HR-TB | lineage2.2.1 | None | SRR29050928 | Other | lineage4.9 | None | SRR1013567 | Pre-XDR-TB | lineage2.2.2 | None | SRR1049006 | HR-TB | lineage2.2.2;lineage4 | None | SRR5341456 | Other | lineage4.9 | None | SAMN02360583 | HR-TB | lineage2.2.2 | None | SRR1013630 | Pre-XDR-TB | lineage2.2.2;lineage4 | None | ERR212001 | HR-TB | None | ERR4818536 | Other | lineage4.9 | None | SRR1048969 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SRR1048987 | HR-TB | lineage2.2.1 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR1167384 | Other | La3;lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | SRR1048980 | HR-TB | lineage3 | None | ERR4796577 | HR-TB | None | ERR4816322 | Other | lineage4.9 | None | SRR1013609 | Sensitive | lineage4 | None | ERR4819241 | Other | lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | ERR4818929 | HR-TB | lineage4.9 | None | SRR3675222 | Other | La1.7 | None | SRR1013602 | HR-TB | lineage2.2.1 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR1013589 | HR-TB | lineage2.2.1 | None | SRR6044875 | Sensitive | lineage4.9 | None | SRR1013597 | Sensitive | lineage2.2.2;lineage4 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR387051 | Other | lineage4.9 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | SRR1048991 | HR-TB | lineage2;lineage4.9 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR1180440 | Other | lineage4.9 | None | SRR1013622 | Pre-XDR-TB | lineage2.2.2 | None | SRR6046046 | Other | lineage4.9 | None | ERR4820773 | HR-TB | lineage4.9 | None | SRR1048994 | HR-TB | lineage4.9 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | SRR1013596 | Sensitive | lineage3 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | ERR4830353 | Other | La1.7 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | ERR4769521 | RR-TB | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | ERR4769427 | Other | La1.2 | None | SRR1048869 | HR-TB | lineage2.2.1;lineage2.2.2 | None | ERR4769450 | Other | lineage4.9 | None | ERR4872269 | XDR-TB | lineage2.2.1 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR9786526 | Other | lineage4.1 | None | SAMN02360556 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02360564 | Pre-XDR-TB | lineage2.2.1 | None | SRR1048998 | HR-TB | lineage2.2.1 | None | SAMN02360571 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SAMN02360586 | HR-TB | lineage2.2.1 | None | SRR12708392 | Other | lineage2.2.1 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | SRR1013614 | Sensitive | lineage2.2.1 | None | ERR7821163 | Other | lineage2.2.1 | None | SRR1048870 | HR-TB | lineage2.2.1;lineage2.2.2 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | SRR1049041 | HR-TB | lineage2.2.1;lineage4 | None | SRR1013595 | Sensitive | lineage3 | None | SRR1013629 | Pre-XDR-TB | lineage2.2.2 | None | ERR4819877 | HR-TB | lineage4.9 | None | ERR9029360 | MDR-TB | lineage2.2.1 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR1049026 | HR-TB | lineage2.2;lineage4.9 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | SRR23961549 | Other | La1.2 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR1049023 | HR-TB | lineage4.9 | None | SRR1048985 | HR-TB | lineage2.2.1 | None | SRR1048992 | HR-TB | lineage2.2;lineage4 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | ERR11252612 | Other | La3;lineage4.9 | None | ERR181824 | HR-TB | lineage4.9 | None | ERR176778 | HR-TB | lineage4.9 | None | SRR1013621 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048996 | Sensitive | lineage4.5 | None | SRR1144809 | HR-TB | lineage2.2.1 | None | SRR1048965 | HR-TB | lineage2.2.1 | None | SRR1013604 | HR-TB | lineage2.2.1 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | ERR6866807 | Other | lineage4.9 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | SRR1048997 | HR-TB | lineage2.2.1 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | SRR1144744 | HR-TB | lineage2.2.1 | None | SRR1180137 | Other | lineage2.2.1 | None | ERR11252736 | Other | lineage4.9 | None | SRR1181403 | Other | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR1013577 | HR-TB | lineage2.2.2 | None | SRR1013601 | HR-TB | lineage2.2.1 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | SRR1183049 | RR-TB | lineage2.2 | None | SRR1048993 | HR-TB | lineage4.9 | None | SRR1013612 | Sensitive | lineage4.5 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | SRR6045053 | Other | lineage4 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | SRR1013582 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | SRR1169249 | Other | lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | SRR3675461 | RR-TB | lineage4.9 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | SRR1049040 | HR-TB | lineage2 | None | ERR2660539 | Other | lineage4.9 | None | SRR1013613 | Sensitive | lineage2.2.1 | None | SAMEA2533358 | MDR-TB | lineage4.1.1.3 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | SRR1048982 | HR-TB | lineage2.2.1.1 | None | ERR752229 | Other | lineage4.5 | None | SRR1013570 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02360595 | Pre-XDR-TB | lineage2.2.2 | None | SRR1013617 | Sensitive | lineage2.2.1;lineage4 | None | SAMN02360591 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02398710 | MDR-TB | lineage2.2.2 | None | SAMN02360563 | Pre-XDR-TB | lineage2.2.2 | None | SRR1013554 | MDR-TB | lineage2.2.2;lineage4 | None | ERR108471 | HR-TB | lineage4.9 | None | ERR4769493 | Other | lineage4.9 | None | ERR11465232 | Sensitive | lineage4.1.2.1 | None | ERR1063849 | HR-TB | lineage4.9 | None | SRR1013618 | RR-TB | lineage2.2.1;lineage4 | None | SRR1049027 | HR-TB | lineage2.2.2;lineage4.9 | None | SRR1048853 | HR-TB | lineage2;lineage4.9 | None | ERR176751 | Other | lineage4.9 | None |
|---|
