TB-Profiler result

Run: ERR4769493
Summary

Run ID: ERR4769493

Sample name:

Date: 01-04-2023 06:42:44

Number of reads: 223905

Percentage reads mapped: 5.59

Strain: lineage4.9;La1.3

Drug-resistance: Pre-XDR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
La1.3 M.bovis None None 0.07
lineage4 Euro-American LAM;T;S;X;H None 0.99
lineage4.9 Euro-American (H37Rv-like) T1 None 0.92
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
gyrB 6695 p.Ile486Leu missense_variant 0.93 ofloxacin, moxifloxacin, levofloxacin, fluoroquinolones, ciprofloxacin
gyrB 6738 p.Thr500Asn missense_variant 0.91 ofloxacin, moxifloxacin, levofloxacin, fluoroquinolones, ciprofloxacin
rpoB 761121 p.Pro439Ser missense_variant 0.71 rifampicin
rrs 1472644 n.799C>T non_coding_transcript_exon_variant 1.0 streptomycin
pncA 2289073 p.His57Asp missense_variant 1.0 pyrazinamide
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5287 c.48T>G synonymous_variant 0.67
gyrB 5296 c.57T>C synonymous_variant 1.0
gyrB 5302 c.63A>G synonymous_variant 1.0
gyrB 5308 c.69G>C synonymous_variant 1.0
gyrB 5341 c.102T>C synonymous_variant 1.0
gyrB 5350 c.111C>G synonymous_variant 1.0
gyrB 5353 c.114T>C synonymous_variant 1.0
gyrB 5362 c.123T>C synonymous_variant 1.0
gyrB 5363 c.124_126delTTAinsCTG synonymous_variant 1.0
gyrB 5371 c.132T>C synonymous_variant 1.0
gyrB 5375 p.Ile46Val missense_variant 1.0
gyrB 5386 c.147G>C synonymous_variant 0.75
gyrB 5396 p.Ala53Ser missense_variant 0.75
gyrB 5407 c.168G>A synonymous_variant 0.75
gyrB 5416 c.177C>G synonymous_variant 0.75
gyrB 6170 p.His311Ile missense_variant 0.6
gyrB 6184 c.945C>G synonymous_variant 0.4
gyrB 6446 p.Ala403Ser missense_variant 1.0
gyrA 6655 c.-647T>C upstream_gene_variant 0.67
gyrA 6673 c.-629A>C upstream_gene_variant 0.94
gyrA 6676 c.-626T>G upstream_gene_variant 0.9
gyrA 6685 c.-617C>A upstream_gene_variant 0.93
gyrA 6700 c.-602T>C upstream_gene_variant 0.93
gyrA 6709 c.-593A>G upstream_gene_variant 0.93
gyrB 6710 p.Ala491Ser missense_variant 0.93
gyrB 6716 p.Ile493Leu missense_variant 0.93
gyrA 6724 c.-578G>C upstream_gene_variant 0.93
gyrB 6725 p.Val496Thr missense_variant 0.93
gyrA 6730 c.-572A>G upstream_gene_variant 0.94
gyrA 6742 c.-560A>G upstream_gene_variant 0.91
gyrA 6745 c.-557T>C upstream_gene_variant 0.91
gyrA 6775 c.-527G>C upstream_gene_variant 0.92
gyrA 6793 c.-509T>C upstream_gene_variant 0.92
gyrB 6798 p.Gly520Ala missense_variant 0.92
gyrA 6808 c.-494C>G upstream_gene_variant 0.93
gyrA 6826 c.-476G>C upstream_gene_variant 0.8
gyrA 8486 c.1185T>C synonymous_variant 0.75
gyrA 8489 c.1188A>G synonymous_variant 0.75
gyrA 8495 c.1194C>G synonymous_variant 0.75
gyrA 8498 c.1197C>T synonymous_variant 0.75
gyrA 8504 c.1203G>C synonymous_variant 0.75
gyrA 8516 c.1215T>C synonymous_variant 0.75
gyrA 8519 c.1218A>C synonymous_variant 0.75
gyrA 8528 c.1227G>C synonymous_variant 0.75
gyrA 8529 p.Ala410Arg missense_variant 0.75
gyrA 8536 p.Glu412Ala missense_variant 0.75
gyrA 8546 c.1245T>C synonymous_variant 0.75
gyrA 8548 p.Ile416Thr missense_variant 0.75
gyrA 8552 c.1251C>G synonymous_variant 0.75
gyrA 8555 c.1254G>C synonymous_variant 0.75
gyrA 8556 p.Ala419Thr missense_variant 0.75
gyrA 8561 c.1260A>C synonymous_variant 0.75
gyrA 8567 p.Ile422Met missense_variant 0.88
gyrA 8569 p.Glu423Gly missense_variant 0.88
gyrA 8589 p.Ile430Val missense_variant 1.0
gyrA 8598 p.Gln433Asp missense_variant 1.0
gyrA 8603 c.1302A>C synonymous_variant 1.0
gyrA 8611 p.Asp437Ala missense_variant 1.0
gyrA 8619 c.1318T>C synonymous_variant 0.86
gyrA 8624 c.1323G>C synonymous_variant 1.0
fgd1 491742 c.960T>C synonymous_variant 1.0
rpoB 760953 p.Ile383Val missense_variant 0.67
rpoB 760958 c.1152G>C synonymous_variant 0.67
rpoB 760965 p.Met387Leu missense_variant 1.0
rpoB 760973 c.1167G>C synonymous_variant 1.0
rpoB 760982 c.1176G>C synonymous_variant 1.0
rpoB 760985 c.1179G>C synonymous_variant 1.0
rpoB 760991 c.1185G>C synonymous_variant 1.0
rpoB 760997 c.1191G>C synonymous_variant 1.0
rpoB 761102 c.1296A>G synonymous_variant 0.6
rpoB 761129 c.1323G>C synonymous_variant 0.71
rpoB 761132 c.1326G>C synonymous_variant 0.71
rpoB 761133 c.1327T>C synonymous_variant 0.78
rpoB 761150 c.1344A>C synonymous_variant 0.83
rpoB 761165 c.1359G>C synonymous_variant 0.98
rpoB 761174 c.1368T>C synonymous_variant 0.98
rpoB 761180 c.1374A>T synonymous_variant 0.98
rpoB 761183 c.1377T>C synonymous_variant 0.98
rpoB 761189 c.1383T>C synonymous_variant 0.98
rpoB 761195 c.1389G>C synonymous_variant 0.98
rpoB 761198 c.1392G>C synonymous_variant 0.98
rpoB 761213 c.1407G>C synonymous_variant 0.99
rpoB 761234 c.1428G>C synonymous_variant 1.0
rpoB 761249 c.1443A>G synonymous_variant 1.0
rpoB 761252 c.1446C>G synonymous_variant 1.0
rpoB 761255 c.1449T>G synonymous_variant 1.0
rpoB 761258 c.1452G>A synonymous_variant 1.0
rpoB 761261 c.1455G>C synonymous_variant 1.0
rpoB 761264 c.1458C>G synonymous_variant 1.0
rpoB 761273 c.1467T>C synonymous_variant 1.0
rpoB 761294 c.1488G>C synonymous_variant 1.0
rpoB 761300 c.1494G>C synonymous_variant 1.0
rpoB 761303 c.1497G>C synonymous_variant 1.0
rpoB 761306 c.1500C>G synonymous_variant 1.0
rpoB 761315 c.1509C>T synonymous_variant 0.89
rpoB 761318 c.1512G>T synonymous_variant 1.0
rpoB 761327 c.1521A>G synonymous_variant 1.0
rpoB 761330 c.1524G>C synonymous_variant 0.85
rpoB 761516 c.1710G>C synonymous_variant 0.4
rpoB 761531 c.1725C>G synonymous_variant 0.5
rpoB 761537 c.1731C>G synonymous_variant 0.6
rpoB 761555 c.1749G>C synonymous_variant 0.71
rpoB 761564 c.1758G>C synonymous_variant 0.86
rpoB 761570 c.1764T>C synonymous_variant 0.75
rpoB 761573 c.1767C>G synonymous_variant 0.75
rpoB 761579 c.1773G>C synonymous_variant 0.75
rpoB 761606 c.1800C>G synonymous_variant 0.67
rpoB 761612 c.1806G>C synonymous_variant 0.6
rpoB 761615 c.1809A>G synonymous_variant 0.6
rpoB 761633 c.1827G>C synonymous_variant 0.75
rpoB 761912 c.2106T>C synonymous_variant 0.4
rpoB 761916 p.Asp704Asn missense_variant 0.62
rpoB 761948 c.2142G>C synonymous_variant 0.92
rpoB 761951 c.2145G>C synonymous_variant 0.93
rpoB 761955 p.Ile717Phe missense_variant 0.93
rpoB 761998 c.2193_2195delGTC disruptive_inframe_deletion 0.97
rpoB 762005 c.2200_2201insAGC disruptive_inframe_insertion 0.97
rpoB 762009 p.Leu735Met missense_variant 0.97
rpoB 762014 c.2208C>G synonymous_variant 0.97
rpoB 762017 c.2211A>G synonymous_variant 0.97
rpoB 762020 p.Glu738Asp missense_variant 0.97
rpoB 762024 p.Val740Ile missense_variant 0.97
rpoB 762053 c.2247T>C synonymous_variant 1.0
rpoB 762065 c.2259T>C synonymous_variant 1.0
rpoB 762083 c.2277T>C synonymous_variant 1.0
rpoB 762084 p.Ala760Pro missense_variant 1.0
rpoB 762101 c.2295C>G synonymous_variant 0.94
rpoB 762104 p.Asp766Glu missense_variant 0.93
rpoB 762114 p.Ile770Val missense_variant 0.83
rpoB 762117 p.Ser771Gly missense_variant 0.67
rpoB 762122 p.Asp772Glu missense_variant 0.67
rpoB 762125 p.Glu773Asp missense_variant 0.67
rpoB 762126 p.Val774Met missense_variant 0.67
rpoB 762132 p.Ala776Lys missense_variant 0.67
rpoB 762140 c.2334G>C synonymous_variant 0.67
rpoB 762143 c.2337T>C synonymous_variant 0.67
rpoB 762146 p.Glu780Asp missense_variant 0.75
rpoB 762149 c.2343G>C synonymous_variant 0.86
rpoB 762167 c.2361T>C synonymous_variant 0.89
rpoB 762173 p.Glu789Asp missense_variant 0.88
rpoB 762176 c.2370T>C synonymous_variant 0.89
rpoB 762185 c.2379G>C synonymous_variant 0.91
rpoB 762197 c.2391C>G synonymous_variant 0.91
rpoB 762209 c.2403C>G synonymous_variant 0.91
rpoB 762218 c.2412T>C synonymous_variant 0.94
rpoB 762233 c.2427G>C synonymous_variant 0.94
rpoB 762245 c.2439G>C synonymous_variant 0.94
rpoB 762254 c.2448T>C synonymous_variant 1.0
rpoB 762266 c.2460T>C synonymous_variant 0.94
rpoB 762293 c.2487T>C synonymous_variant 0.92
rpoB 762296 c.2490G>C synonymous_variant 0.91
rpoB 762297 p.Leu831Met missense_variant 0.91
rpoB 762300 p.Lys832Arg missense_variant 0.91
rpoB 762308 c.2502G>C synonymous_variant 0.91
rpoB 762317 c.2511A>G synonymous_variant 1.0
rpoB 762329 c.2523G>C synonymous_variant 1.0
rpoB 762336 p.Ile844Val missense_variant 1.0
rpoB 762341 c.2535G>C synonymous_variant 1.0
rpoB 762347 c.2541T>C synonymous_variant 1.0
rpoB 762350 c.2544C>G synonymous_variant 1.0
rpoB 762362 p.Glu852Asp missense_variant 1.0
rpoC 762416 c.-954A>G upstream_gene_variant 1.0
rpoB 762426 p.Ser874Gln missense_variant 1.0
rpoC 762434 c.-936T>C upstream_gene_variant 1.0
rpoB 762441 p.Leu879Met missense_variant 1.0
rpoC 762452 c.-918G>C upstream_gene_variant 1.0
rpoC 762455 c.-915C>T upstream_gene_variant 0.93
rpoC 762470 c.-900G>C upstream_gene_variant 1.0
rpoB 762489 p.Val895Gln missense_variant 1.0
rpoC 762503 c.-867G>C upstream_gene_variant 1.0
rpoC 762509 c.-861T>G upstream_gene_variant 1.0
rpoB 762510 p.Ala902Pro missense_variant 1.0
rpoC 762527 c.-843G>C upstream_gene_variant 1.0
rpoC 762533 c.-837T>C upstream_gene_variant 1.0
rpoB 762534 p.Ile910Leu missense_variant 1.0
rpoC 762537 c.-833T>C upstream_gene_variant 1.0
rpoC 762560 c.-810A>C upstream_gene_variant 1.0
rpoC 762563 c.-807G>A upstream_gene_variant 1.0
rpoB 762579 p.Ile925Val missense_variant 1.0
rpoC 762782 c.-588T>C upstream_gene_variant 0.73
rpoB 762795 p.Asp997Asn missense_variant 0.85
rpoC 762800 c.-570C>G upstream_gene_variant 0.85
rpoC 762812 c.-558C>G upstream_gene_variant 0.85
rpoB 762813 p.Met1003Gln missense_variant 0.85
rpoC 762818 c.-552C>G upstream_gene_variant 0.85
rpoB 762819 p.Phe1005Ile missense_variant 0.85
rpoC 762827 c.-543G>C upstream_gene_variant 0.86
rpoC 762831 c.-539_-538delAGinsTC upstream_gene_variant 0.86
rpoC 762836 c.-534C>T upstream_gene_variant 0.88
rpoB 762850 p.Tyr1015Phe missense_variant 1.0
rpoC 762857 c.-513C>G upstream_gene_variant 1.0
rpoB 762858 p.Thr1018Ser missense_variant 1.0
rpoC 762863 c.-507T>G upstream_gene_variant 1.0
rpoB 762878 p.Ile1024Met missense_variant 0.97
rpoB 762879 p.Met1025Leu missense_variant 0.97
rpoB 762905 p.Asp1033Glu missense_variant 0.98
rpoC 762920 c.-450C>T upstream_gene_variant 0.98
rpoC 762926 c.-444C>G upstream_gene_variant 0.96
rpoC 762929 c.-441G>C upstream_gene_variant 0.96
rpoC 762947 c.-423C>G upstream_gene_variant 0.98
rpoC 762965 c.-405T>C upstream_gene_variant 0.97
rpoC 762971 c.-399G>C upstream_gene_variant 0.97
rpoC 762980 c.-390T>C upstream_gene_variant 0.97
rpoC 762989 c.-381G>C upstream_gene_variant 0.97
rpoC 762995 c.-375G>T upstream_gene_variant 0.97
rpoB 763005 p.Cys1067Val missense_variant 0.95
rpoC 763022 c.-348C>G upstream_gene_variant 0.99
rpoC 763025 c.-345C>T upstream_gene_variant 0.99
rpoC 763028 c.-342T>C upstream_gene_variant 0.99
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoC 763053 c.-317T>C upstream_gene_variant 0.99
rpoC 763070 c.-300T>C upstream_gene_variant 0.98
rpoB 763074 p.Thr1090Val missense_variant 0.98
rpoC 763088 c.-282C>G upstream_gene_variant 0.98
rpoC 763094 c.-276G>C upstream_gene_variant 0.98
rpoC 763109 c.-261C>G upstream_gene_variant 0.95
rpoC 763115 c.-255T>C upstream_gene_variant 0.97
rpoB 763118 p.Glu1104Asp missense_variant 0.94
rpoB 763130 p.Glu1108Asp missense_variant 0.93
rpoC 763133 c.-237G>C upstream_gene_variant 0.92
rpoC 763136 c.-234C>T upstream_gene_variant 0.92
rpoC 763142 c.-228C>G upstream_gene_variant 0.92
rpoC 763160 c.-210G>C upstream_gene_variant 0.89
rpoC 763166 c.-204A>G upstream_gene_variant 0.85
rpoC 763169 c.-201A>G upstream_gene_variant 0.83
rpoC 763172 c.-198G>C upstream_gene_variant 0.83
rpoC 763200 c.-170C>T upstream_gene_variant 0.6
rpoC 763444 p.Tyr25* stop_gained 0.67
rpoC 763456 c.87A>G synonymous_variant 0.93
rpoC 763462 c.93G>C synonymous_variant 0.94
rpoC 763486 c.117T>C synonymous_variant 0.97
rpoC 763507 c.138G>C synonymous_variant 0.94
rpoC 763517 p.Lys50Arg missense_variant 0.95
rpoC 763528 c.159G>C synonymous_variant 0.95
rpoC 763531 c.162G>C synonymous_variant 0.96
rpoC 763534 c.165T>C synonymous_variant 0.96
rpoC 763546 c.177A>G synonymous_variant 0.96
rpoC 763550 p.Tyr61Ala missense_variant 0.96
rpoC 763570 c.201G>C synonymous_variant 0.97
rpoC 763573 c.204G>C synonymous_variant 0.97
rpoC 763619 p.Arg84Lys missense_variant 0.97
rpoC 763622 p.Ala85Ser missense_variant 0.98
rpoC 763633 c.264T>C synonymous_variant 0.98
rpoC 763636 c.267T>C synonymous_variant 0.98
rpoC 763642 c.273G>C synonymous_variant 0.98
rpoC 763660 c.291T>G synonymous_variant 1.0
rpoC 763669 c.300C>G synonymous_variant 1.0
rpoC 763675 c.306C>G synonymous_variant 0.98
rpoC 763696 c.327T>C synonymous_variant 0.97
rpoC 763699 c.330G>T synonymous_variant 0.97
rpoC 763702 c.333C>G synonymous_variant 0.97
rpoC 763708 c.339G>C synonymous_variant 0.97
rpoC 763709 c.340C>T synonymous_variant 0.95
rpoC 763714 c.345G>C synonymous_variant 0.95
rpoC 763717 c.348T>C synonymous_variant 0.95
rpoC 763732 c.363C>G synonymous_variant 0.93
rpoC 763741 c.372C>T synonymous_variant 0.9
rpoC 763744 c.375G>C synonymous_variant 0.89
rpoC 763765 c.396T>G synonymous_variant 0.6
rpoC 763768 c.399C>G synonymous_variant 0.6
rpoC 763769 p.Tyr134Asn missense_variant 0.6
rpoC 763772 p.Val135Ile missense_variant 0.6
rpoC 763783 c.414G>C synonymous_variant 0.6
rpoC 764115 p.Gly249Glu missense_variant 1.0
rpoC 764119 p.Glu250Asp missense_variant 1.0
rpoC 764131 c.762T>C synonymous_variant 1.0
rpoC 764133 p.Ala255Gly missense_variant 1.0
rpoC 764143 c.774G>C synonymous_variant 1.0
rpoC 764147 p.Ser260Ala missense_variant 1.0
rpoC 764157 p.Lys263Thr missense_variant 0.88
rpoC 764165 p.Glu266Arg missense_variant 0.88
rpoC 764177 p.Ile270Leu missense_variant 0.88
rpoC 764181 p.Asp271Ala missense_variant 0.88
rpoC 764188 c.819A>G synonymous_variant 0.88
rpoC 764197 c.828G>T synonymous_variant 0.88
rpoC 764200 c.831G>C synonymous_variant 0.88
rpoC 764203 c.834G>C synonymous_variant 0.88
rpoC 764206 p.Asp279Glu missense_variant 0.88
rpoC 764207 p.Val280Thr missense_variant 0.88
rpoC 764215 c.846A>C synonymous_variant 0.92
rpoC 764216 p.Asn283Asp missense_variant 0.92
rpoC 764227 c.858G>C synonymous_variant 0.96
rpoC 764239 c.870T>G synonymous_variant 0.97
rpoC 764254 c.885G>C synonymous_variant 0.97
rpoC 764263 c.894G>C synonymous_variant 0.96
rpoC 764266 c.897T>C synonymous_variant 0.96
rpoC 764269 c.900G>C synonymous_variant 0.96
rpoC 764277 p.Gln303Leu missense_variant 0.96
rpoC 764291 p.Ser308Asp missense_variant 0.96
rpoC 764297 p.Met310Ala missense_variant 0.96
rpoC 764301 p.Gly311Ala missense_variant 1.0
rpoC 764308 c.939G>C synonymous_variant 1.0
rpoC 764315 p.Ala316Cys missense_variant 1.0
rpoC 764365 c.996C>T synonymous_variant 1.0
rpoC 764371 c.1002G>T synonymous_variant 1.0
rpoC 764380 c.1011G>C synonymous_variant 1.0
rpoC 764383 c.1014C>G synonymous_variant 1.0
rpoC 764387 c.1018_1020delTTGinsCTC synonymous_variant 1.0
rpoC 764405 c.1036_1038delAGGinsCGC synonymous_variant 1.0
rpoC 764410 c.1041G>C synonymous_variant 1.0
rpoC 764428 c.1059G>C synonymous_variant 1.0
rpoC 764431 c.1062G>C synonymous_variant 1.0
rpoC 764434 c.1065A>G synonymous_variant 1.0
rpoC 764435 c.1066_1068delAGGinsCGC synonymous_variant 1.0
rpoC 764438 p.Leu357Met missense_variant 1.0
rpoC 764446 c.1077T>C synonymous_variant 1.0
rpoC 764449 c.1080G>C synonymous_variant 1.0
rpoC 764452 c.1083T>C synonymous_variant 0.85
rpoC 764458 c.1089G>C synonymous_variant 1.0
rpoC 764461 c.1092A>G synonymous_variant 1.0
rpoC 764470 c.1101C>G synonymous_variant 1.0
rpoC 764485 c.1116G>C synonymous_variant 1.0
rpoC 764497 c.1128A>G synonymous_variant 1.0
rpoC 764500 c.1131C>G synonymous_variant 1.0
rpoC 764503 c.1134G>C synonymous_variant 1.0
rpoC 764521 c.1152T>C synonymous_variant 1.0
rpoC 764536 c.1167G>T synonymous_variant 1.0
rpoC 764539 c.1170C>G synonymous_variant 1.0
rpoC 764548 c.1179G>T synonymous_variant 1.0
rpoC 764560 c.1191T>C synonymous_variant 1.0
rpoC 764566 c.1197C>G synonymous_variant 1.0
rpoC 764575 c.1206T>G synonymous_variant 0.99
rpoC 764581 c.1212T>C synonymous_variant 0.99
rpoC 764605 c.1236G>C synonymous_variant 0.99
rpoC 764611 c.1242G>C synonymous_variant 0.99
rpoC 764623 c.1254C>G synonymous_variant 0.99
rpoC 764632 c.1263T>A synonymous_variant 0.99
rpoC 764650 c.1281G>T synonymous_variant 0.98
rpoC 764660 p.Val431Ile missense_variant 0.98
rpoC 764695 c.1326T>C synonymous_variant 0.97
rpoC 764713 c.1344G>C synonymous_variant 0.95
rpoC 764716 c.1347G>C synonymous_variant 0.95
rpoC 764731 c.1362G>C synonymous_variant 0.96
rpoC 764737 c.1368G>C synonymous_variant 0.95
rpoC 764744 p.Arg459Glu missense_variant 0.88
rpoC 764749 c.1380G>C synonymous_variant 0.86
rpoC 764754 p.Asp462Ala missense_variant 0.86
rpoC 764756 p.Leu463Lys missense_variant 0.86
rpoC 764760 p.Asn464Ser missense_variant 0.86
rpoC 764762 p.His465Tyr missense_variant 0.86
rpoC 764780 c.1411_1413delAGCinsTCG synonymous_variant 0.89
rpoC 764797 c.1428G>C synonymous_variant 0.9
rpoC 764813 p.Gln482Glu missense_variant 1.0
rpoC 764818 c.1449G>C synonymous_variant 1.0
rpoC 764824 c.1455T>C synonymous_variant 1.0
rpoC 764827 c.1458G>C synonymous_variant 1.0
rpoC 764833 c.1464A>G synonymous_variant 1.0
rpoC 764836 p.Glu489Asp missense_variant 1.0
rpoC 764843 p.Ala492Thr missense_variant 1.0
rpoC 764847 p.Glu493Gly missense_variant 1.0
rpoC 764858 c.1489T>C synonymous_variant 1.0
rpoC 764863 c.1494G>C synonymous_variant 0.95
rpoC 764869 c.1500C>T synonymous_variant 0.82
rpoC 764872 c.1503A>C synonymous_variant 0.95
rpoC 764887 c.1518G>C synonymous_variant 0.95
rpoC 764888 c.1519T>C synonymous_variant 0.95
rpoC 764893 c.1524T>C synonymous_variant 0.96
rpoC 764911 c.1542A>C synonymous_variant 0.95
rpoC 764912 p.Met515Val missense_variant 0.95
rpoC 764917 c.1548G>C synonymous_variant 0.95
rpoC 764920 c.1551G>C synonymous_variant 0.95
rpoC 764923 c.1554A>G synonymous_variant 0.96
rpoC 764935 c.1566T>C synonymous_variant 0.97
rpoC 764948 c.1579T>C synonymous_variant 0.96
rpoC 764952 p.Val528Ala missense_variant 0.96
rpoC 764968 c.1599T>C synonymous_variant 0.97
rpoC 764983 c.1614T>C synonymous_variant 0.98
rpoC 765004 c.1635G>C synonymous_variant 0.97
rpoC 765007 c.1638T>G synonymous_variant 0.97
rpoC 765008 c.1639T>C synonymous_variant 0.97
rpoC 765011 c.1642_1643delAGinsTC synonymous_variant 0.97
rpoC 765016 c.1647C>G synonymous_variant 1.0
rpoC 765019 c.1650A>G synonymous_variant 1.0
rpoC 765034 c.1665T>C synonymous_variant 1.0
rpoC 765040 c.1671T>C synonymous_variant 1.0
rpoC 765041 c.1672T>C synonymous_variant 1.0
rpoC 765047 c.1678T>C synonymous_variant 1.0
rpoC 765055 c.1686C>G synonymous_variant 1.0
rpoC 765076 c.1707A>G synonymous_variant 1.0
rpoC 765079 c.1710T>C synonymous_variant 1.0
rpoC 765082 c.1713G>A synonymous_variant 1.0
rpoC 765083 p.Arg572Lys missense_variant 1.0
rpoC 765089 c.1720T>C synonymous_variant 1.0
rpoC 765103 c.1734G>A synonymous_variant 1.0
rpoC 765115 c.1746G>C synonymous_variant 1.0
rpoC 765121 c.1752G>C synonymous_variant 1.0
rpoC 765129 p.Tyr587Phe missense_variant 1.0
rpoC 766291 c.2922G>C synonymous_variant 1.0
rpoC 766297 c.2928G>C synonymous_variant 1.0
rpoC 766309 c.2940G>C synonymous_variant 1.0
rpoC 766331 p.Leu988Met missense_variant 0.93
rpoC 766345 c.2976T>C synonymous_variant 0.97
rpoC 766348 c.2979A>G synonymous_variant 0.97
rpoC 766354 c.2985C>G synonymous_variant 0.97
rpoC 766363 c.2994G>C synonymous_variant 0.97
rpoC 766369 c.3000C>G synonymous_variant 0.97
rpoC 766384 c.3015A>G synonymous_variant 0.97
rpoC 766393 c.3024C>G synonymous_variant 0.93
rpoC 766408 c.3039C>T synonymous_variant 0.97
rpoC 766423 c.3054T>C synonymous_variant 0.96
rpoC 766432 c.3063T>C synonymous_variant 0.95
rpoC 766434 p.Glu1022Gly missense_variant 0.94
rpoC 766447 c.3078T>C synonymous_variant 0.93
rpoC 766459 c.3090G>A synonymous_variant 0.86
rpoC 766462 c.3093G>C synonymous_variant 0.83
rpoC 767002 c.3633G>C synonymous_variant 0.86
rpoC 767008 c.3639G>C synonymous_variant 0.92
rpoC 767020 c.3651C>G synonymous_variant 1.0
rpoC 767023 c.3654C>T synonymous_variant 0.92
rpoC 767038 c.3669G>C synonymous_variant 0.92
rpoC 767041 c.3672G>C synonymous_variant 0.92
rpoC 767044 c.3675G>C synonymous_variant 0.92
rpoC 767056 c.3687C>G synonymous_variant 0.92
rpoC 767059 c.3690T>C synonymous_variant 0.92
rpoC 767062 c.3693C>A synonymous_variant 0.92
rpoC 767071 c.3702C>G synonymous_variant 0.92
rpoC 767074 c.3705T>C synonymous_variant 0.92
rpoC 767077 c.3708G>C synonymous_variant 0.92
rpoC 767087 p.Cys1240Lys missense_variant 1.0
rpoC 767093 c.3724_3725delAGinsTC synonymous_variant 1.0
rpoC 767098 c.3729T>C synonymous_variant 1.0
rpoC 767104 c.3735C>G synonymous_variant 1.0
rpoC 767106 p.Asn1246Ile missense_variant 1.0
rpoC 767110 c.3741T>C synonymous_variant 1.0
rpoC 767119 c.3750A>G synonymous_variant 1.0
rpoC 767152 c.3783T>C synonymous_variant 1.0
rpoC 767155 c.3786C>G synonymous_variant 1.0
rpoC 767158 c.3789T>C synonymous_variant 1.0
rpoC 767162 p.Asn1265Ser missense_variant 1.0
rpsL 781754 c.195G>C synonymous_variant 0.67
rpsL 781763 c.204C>G synonymous_variant 0.75
rpsL 781793 c.234G>C synonymous_variant 1.0
rpsL 781802 c.243G>C synonymous_variant 1.0
rpsL 781805 c.246G>C synonymous_variant 1.0
rpsL 781811 c.252C>T synonymous_variant 1.0
rpsL 781817 c.258G>A synonymous_variant 1.0
rpsL 781829 c.270G>C synonymous_variant 1.0
rpsL 781832 c.273T>G synonymous_variant 1.0
rpsL 781835 c.276T>C synonymous_variant 1.0
rpsL 781838 c.279G>C synonymous_variant 1.0
rpsL 781851 p.Ile98Val missense_variant 1.0
rpsL 781859 c.300T>C synonymous_variant 1.0
rpsL 781862 c.303G>C synonymous_variant 1.0
rpsL 781865 c.306G>C synonymous_variant 1.0
rpsL 781868 c.309T>C synonymous_variant 1.0
rpsL 781871 c.312G>C synonymous_variant 1.0
rpsL 781877 c.318T>C synonymous_variant 0.67
rpsL 781884 p.Asn109Asp missense_variant 0.67
rplC 800621 c.-188G>A upstream_gene_variant 0.67
rplC 800633 c.-176T>C upstream_gene_variant 0.92
rplC 800648 c.-161A>G upstream_gene_variant 0.94
rplC 800654 c.-155T>C upstream_gene_variant 0.94
rplC 800672 c.-137G>C upstream_gene_variant 0.94
rplC 800693 c.-116A>C upstream_gene_variant 1.0
rplC 800702 c.-107G>C upstream_gene_variant 0.94
rplC 800703 c.-106T>C upstream_gene_variant 0.94
rplC 800714 c.-95C>T upstream_gene_variant 0.94
rplC 800715 c.-94A>C upstream_gene_variant 0.94
rplC 800720 c.-89T>C upstream_gene_variant 0.94
rplC 800723 c.-86C>G upstream_gene_variant 0.94
rplC 800726 c.-83G>C upstream_gene_variant 0.94
rplC 800744 c.-65G>T upstream_gene_variant 0.89
rplC 800768 c.-41C>G upstream_gene_variant 0.82
rplC 800769 c.-40_-39delAGinsTC upstream_gene_variant 0.81
rplC 800786 c.-23C>T upstream_gene_variant 0.5
rrs 1471850 n.7_8delTT non_coding_transcript_exon_variant 1.0
rrs 1471918 n.73A>T non_coding_transcript_exon_variant 1.0
rrs 1471923 n.78T>C non_coding_transcript_exon_variant 1.0
rrs 1471925 n.80T>C non_coding_transcript_exon_variant 1.0
rrs 1471932 n.87A>G non_coding_transcript_exon_variant 1.0
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 1.0
rrs 1471938 n.93T>A non_coding_transcript_exon_variant 1.0
rrs 1471972 n.127T>C non_coding_transcript_exon_variant 1.0
rrs 1471979 n.134T>C non_coding_transcript_exon_variant 1.0
rrs 1472028 n.183A>G non_coding_transcript_exon_variant 0.99
rrs 1472054 n.210_212delCGC non_coding_transcript_exon_variant 1.0
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 1.0
rrs 1472062 n.217G>T non_coding_transcript_exon_variant 1.0
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 1.0
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 1.0
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 1.0
rrs 1472123 n.278A>G non_coding_transcript_exon_variant 1.0
rrs 1472150 n.305T>G non_coding_transcript_exon_variant 1.0
rrs 1472151 n.306C>A non_coding_transcript_exon_variant 1.0
rrs 1472160 n.315C>T non_coding_transcript_exon_variant 1.0
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 1.0
rrs 1472225 n.380C>G non_coding_transcript_exon_variant 1.0
rrs 1472278 n.433C>T non_coding_transcript_exon_variant 1.0
rrs 1472279 n.434T>C non_coding_transcript_exon_variant 1.0
rrs 1472299 n.455_462delCCGGGTTC non_coding_transcript_exon_variant 1.0
rrs 1472309 n.464C>T non_coding_transcript_exon_variant 1.0
rrs 1472311 n.467_470delGGAT non_coding_transcript_exon_variant 1.0
rrs 1472325 n.480G>A non_coding_transcript_exon_variant 1.0
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 1.0
rrs 1472435 n.590T>C non_coding_transcript_exon_variant 1.0
rrs 1472438 n.593T>C non_coding_transcript_exon_variant 1.0
rrs 1472439 n.594C>T non_coding_transcript_exon_variant 1.0
rrs 1472447 n.602C>T non_coding_transcript_exon_variant 1.0
rrs 1472448 n.603T>C non_coding_transcript_exon_variant 0.99
rrs 1472450 n.605A>G non_coding_transcript_exon_variant 1.0
rrs 1472451 n.606C>G non_coding_transcript_exon_variant 0.99
rrs 1472461 n.616G>C non_coding_transcript_exon_variant 1.0
rrs 1472462 n.617T>C non_coding_transcript_exon_variant 1.0
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 1.0
rrs 1472471 n.626G>A non_coding_transcript_exon_variant 1.0
rrs 1472489 n.644A>T non_coding_transcript_exon_variant 1.0
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 1.0
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 1.0
rrs 1472607 n.762G>A non_coding_transcript_exon_variant 1.0
rrs 1472612 n.767G>T non_coding_transcript_exon_variant 1.0
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 1.0
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 1.0
rrs 1472682 n.837T>A non_coding_transcript_exon_variant 1.0
rrs 1472683 n.838T>C non_coding_transcript_exon_variant 1.0
rrs 1472685 n.840G>A non_coding_transcript_exon_variant 1.0
rrs 1472686 n.841G>C non_coding_transcript_exon_variant 0.99
rrs 1472687 n.842A>T non_coding_transcript_exon_variant 0.99
rrs 1472690 n.845C>T non_coding_transcript_exon_variant 1.0
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 1.0
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.99
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 1.0
rrs 1472836 n.991G>A non_coding_transcript_exon_variant 0.99
rrs 1472837 n.992C>T non_coding_transcript_exon_variant 1.0
rrs 1472840 n.995A>G non_coding_transcript_exon_variant 1.0
rrs 1472845 n.1000G>C non_coding_transcript_exon_variant 1.0
rrs 1472846 n.1001C>G non_coding_transcript_exon_variant 1.0
rrs 1472848 n.1003T>G non_coding_transcript_exon_variant 1.0
rrs 1472850 n.1005T>C non_coding_transcript_exon_variant 1.0
rrs 1472857 n.1012A>G non_coding_transcript_exon_variant 1.0
rrs 1472859 n.1014G>T non_coding_transcript_exon_variant 1.0
rrs 1472861 n.1016G>C non_coding_transcript_exon_variant 0.99
rrs 1472874 n.1029C>T non_coding_transcript_exon_variant 1.0
rrs 1472875 n.1030T>C non_coding_transcript_exon_variant 1.0
rrs 1472878 n.1033G>A non_coding_transcript_exon_variant 0.99
rrs 1472880 n.1035G>A non_coding_transcript_exon_variant 1.0
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 1.0
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 1.0
rrs 1472993 n.1148G>A non_coding_transcript_exon_variant 1.0
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 1.0
rrs 1473080 n.1235C>T non_coding_transcript_exon_variant 1.0
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 1.0
rrs 1473089 n.1244A>T non_coding_transcript_exon_variant 1.0
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 1.0
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 1.0
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 1.0
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 1.0
rrs 1473115 n.1270G>T non_coding_transcript_exon_variant 1.0
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 1.0
rrs 1473123 n.1278A>G non_coding_transcript_exon_variant 1.0
rrs 1473283 n.1438T>C non_coding_transcript_exon_variant 0.99
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.98
rrl 1473390 n.-268A>T upstream_gene_variant 0.33
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 0.86
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 1.0
rrl 1473899 n.242A>T non_coding_transcript_exon_variant 1.0
rrl 1473922 n.265A>T non_coding_transcript_exon_variant 0.8
rrl 1473923 n.266C>G non_coding_transcript_exon_variant 0.75
rrl 1474112 n.455T>C non_coding_transcript_exon_variant 1.0
rrl 1474135 n.478G>A non_coding_transcript_exon_variant 1.0
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 1.0
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.99
rrl 1474174 n.517A>G non_coding_transcript_exon_variant 1.0
rrl 1474178 n.522dupC non_coding_transcript_exon_variant 1.0
rrl 1474200 n.545delT non_coding_transcript_exon_variant 1.0
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 1.0
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 1.0
rrl 1474285 n.630_631delTC non_coding_transcript_exon_variant 0.36
rrl 1474289 n.632C>T non_coding_transcript_exon_variant 0.5
rrl 1474310 n.653T>G non_coding_transcript_exon_variant 1.0
rrl 1474351 n.694G>C non_coding_transcript_exon_variant 0.99
rrl 1474353 n.696A>G non_coding_transcript_exon_variant 0.99
rrl 1474356 n.699T>C non_coding_transcript_exon_variant 0.99
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.99
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 0.99
rrl 1474399 n.742G>A non_coding_transcript_exon_variant 0.93
rrl 1474400 n.743_744insA non_coding_transcript_exon_variant 0.67
rrl 1474403 n.746G>A non_coding_transcript_exon_variant 0.5
rrl 1474405 n.748A>C non_coding_transcript_exon_variant 0.5
rrl 1474407 n.752_776delGGCGACCCACACGCGCATACGCGCG non_coding_transcript_exon_variant 0.5
rrl 1474438 n.781A>T non_coding_transcript_exon_variant 0.78
rrl 1474439 n.782A>T non_coding_transcript_exon_variant 0.86
rrl 1474451 n.794T>C non_coding_transcript_exon_variant 0.97
rrl 1474487 n.830G>T non_coding_transcript_exon_variant 0.99
rrl 1474495 n.838G>A non_coding_transcript_exon_variant 0.99
rrl 1474496 n.839C>G non_coding_transcript_exon_variant 0.99
rrl 1474497 n.840G>A non_coding_transcript_exon_variant 0.99
rrl 1474506 n.849C>T non_coding_transcript_exon_variant 0.99
rrl 1474507 n.850G>C non_coding_transcript_exon_variant 0.99
rrl 1474508 n.851C>T non_coding_transcript_exon_variant 0.99
rrl 1474517 n.860C>G non_coding_transcript_exon_variant 0.99
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.99
rrl 1474552 n.895C>T non_coding_transcript_exon_variant 1.0
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.94
rrl 1474628 n.971C>T non_coding_transcript_exon_variant 0.9
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.78
rrl 1474636 n.979A>C non_coding_transcript_exon_variant 0.88
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 0.88
rrl 1474639 n.982G>C non_coding_transcript_exon_variant 0.88
rrl 1474640 n.983C>T non_coding_transcript_exon_variant 0.88
rrl 1474658 n.1001A>T non_coding_transcript_exon_variant 0.67
rrl 1474722 n.1065T>C non_coding_transcript_exon_variant 0.75
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 0.98
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.99
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 0.99
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.99
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.99
rrl 1474798 n.1141C>G non_coding_transcript_exon_variant 0.99
rrl 1474801 n.1144G>A non_coding_transcript_exon_variant 0.99
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.99
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 1.0
rrl 1474824 n.1167A>G non_coding_transcript_exon_variant 0.99
rrl 1474825 n.1168G>A non_coding_transcript_exon_variant 1.0
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 1.0
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 1.0
rrl 1474896 n.1239A>G non_coding_transcript_exon_variant 1.0
rrl 1474901 n.1244A>G non_coding_transcript_exon_variant 1.0
rrl 1474903 n.1246T>C non_coding_transcript_exon_variant 1.0
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 1.0
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 1.0
rrl 1474921 n.1264C>T non_coding_transcript_exon_variant 1.0
rrl 1474934 n.1277C>T non_coding_transcript_exon_variant 1.0
rrl 1475116 n.1459G>A non_coding_transcript_exon_variant 1.0
rrl 1475120 n.1463G>T non_coding_transcript_exon_variant 1.0
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.83
rrl 1475531 n.1874C>T non_coding_transcript_exon_variant 0.83
rrl 1475538 n.1881T>A non_coding_transcript_exon_variant 0.75
rrl 1475539 n.1882A>T non_coding_transcript_exon_variant 0.75
rrl 1475542 n.1885A>G non_coding_transcript_exon_variant 0.67
rrl 1475544 n.1887A>T non_coding_transcript_exon_variant 0.75
rrl 1475545 n.1888T>G non_coding_transcript_exon_variant 0.75
rrl 1475550 n.1893A>G non_coding_transcript_exon_variant 0.75
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 1.0
rrl 1475696 n.2039T>A non_coding_transcript_exon_variant 1.0
rrl 1475703 n.2046A>T non_coding_transcript_exon_variant 1.0
rrl 1475753 n.2096C>T non_coding_transcript_exon_variant 1.0
rrl 1475758 n.2101A>G non_coding_transcript_exon_variant 1.0
rrl 1475759 n.2102C>G non_coding_transcript_exon_variant 1.0
rrl 1475761 n.2106_2110delCAAGG non_coding_transcript_exon_variant 1.0
rrl 1475769 n.2112_2113insTTTGCCGGCC non_coding_transcript_exon_variant 0.99
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 1.0
rrl 1475883 n.2226A>T non_coding_transcript_exon_variant 0.99
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.99
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 1.0
rrl 1475902 n.2245T>C non_coding_transcript_exon_variant 1.0
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 1.0
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 1.0
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 1.0
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 1.0
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 1.0
rrl 1476035 n.2378G>A non_coding_transcript_exon_variant 1.0
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 1.0
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 1.0
rrl 1476087 n.2430C>T non_coding_transcript_exon_variant 1.0
rrl 1476099 n.2442A>G non_coding_transcript_exon_variant 1.0
rrl 1476100 n.2443A>C non_coding_transcript_exon_variant 1.0
rrl 1476103 n.2446C>G non_coding_transcript_exon_variant 0.99
rrl 1476105 n.2450delA non_coding_transcript_exon_variant 1.0
rrl 1476110 n.2453G>C non_coding_transcript_exon_variant 1.0
rrl 1476113 n.2456T>G non_coding_transcript_exon_variant 1.0
rrl 1476116 n.2459A>G non_coding_transcript_exon_variant 1.0
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 1.0
rrl 1476160 n.2503T>C non_coding_transcript_exon_variant 1.0
rrl 1476164 n.2507A>G non_coding_transcript_exon_variant 1.0
rrl 1476165 n.2508T>A non_coding_transcript_exon_variant 1.0
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 1.0
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 1.0
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 1.0
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 1.0
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 1.0
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 1.0
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 1.0
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 1.0
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 1.0
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 1.0
rrl 1476267 n.2610G>T non_coding_transcript_exon_variant 0.99
rrl 1476276 n.2619C>A non_coding_transcript_exon_variant 0.99
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.99
rrl 1476297 n.2640C>G non_coding_transcript_exon_variant 1.0
rrl 1476298 n.2641C>G non_coding_transcript_exon_variant 1.0
rrl 1476300 n.2643G>T non_coding_transcript_exon_variant 1.0
rrl 1476301 n.2644A>T non_coding_transcript_exon_variant 1.0
rrl 1476309 n.2652G>C non_coding_transcript_exon_variant 1.0
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 1.0
rrl 1476523 n.2867delC non_coding_transcript_exon_variant 1.0
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 1.0
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 1.0
rrl 1476573 n.2916A>T non_coding_transcript_exon_variant 1.0
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 1.0
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 1.0
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 1.0
rrl 1476607 n.2950C>T non_coding_transcript_exon_variant 1.0
rrl 1476608 n.2951C>T non_coding_transcript_exon_variant 1.0
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 1.0
rrl 1476616 n.2959A>G non_coding_transcript_exon_variant 1.0
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 1.0
rrl 1476624 n.2967T>A non_coding_transcript_exon_variant 1.0
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.97
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 0.97
rrl 1476630 n.2973A>G non_coding_transcript_exon_variant 0.97
rrl 1476661 n.3004A>G non_coding_transcript_exon_variant 0.97
rrl 1476665 n.3008T>G non_coding_transcript_exon_variant 0.96
rrl 1476666 n.3009C>T non_coding_transcript_exon_variant 0.96
rrl 1476670 n.3013A>G non_coding_transcript_exon_variant 1.0
rrl 1476728 n.3071T>C non_coding_transcript_exon_variant 1.0
rpsA 1833668 p.Ile43Val missense_variant 0.71
rpsA 1833676 c.135A>G synonymous_variant 0.71
rpsA 1833679 c.138G>C synonymous_variant 0.71
rpsA 1833682 c.141C>T synonymous_variant 0.71
rpsA 1833685 c.144G>C synonymous_variant 0.71
rpsA 1833688 c.147C>T synonymous_variant 0.73
rpsA 1833694 c.153G>C synonymous_variant 0.76
rpsA 1833697 c.156C>G synonymous_variant 0.79
rpsA 1833718 c.177C>G synonymous_variant 0.85
rpsA 1833721 c.180A>G synonymous_variant 0.85
rpsA 1833727 c.186G>C synonymous_variant 0.88
rpsA 1833734 p.Ala65Ser missense_variant 0.86
rpsA 1833742 c.201A>G synonymous_variant 0.86
rpsA 1833760 c.219C>T synonymous_variant 0.91
rpsA 1833770 p.Asn77Asp missense_variant 0.91
rpsA 1833778 c.237C>G synonymous_variant 0.92
rpsA 1833781 c.240T>C synonymous_variant 0.91
rpsA 1833782 p.Ser81Glu missense_variant 0.91
rpsA 1833797 p.Val86Ile missense_variant 0.95
rpsA 1833802 p.Glu87Asp missense_variant 0.95
rpsA 1833811 c.270G>C synonymous_variant 0.96
rpsA 1833829 c.288A>G synonymous_variant 0.96
rpsA 1833832 c.291G>A synonymous_variant 0.96
rpsA 1833838 c.297G>C synonymous_variant 0.97
rpsA 1833841 c.300C>G synonymous_variant 0.96
rpsA 1833847 c.306C>G synonymous_variant 0.97
rpsA 1833856 c.315A>G synonymous_variant 0.97
rpsA 1833859 c.318C>T synonymous_variant 0.97
rpsA 1833874 c.333T>C synonymous_variant 0.98
rpsA 1833894 p.Ala118Asp missense_variant 0.98
rpsA 1833914 p.Ala125Pro missense_variant 0.97
rpsA 1833921 p.Lys127Thr missense_variant 0.95
rpsA 1833925 c.384C>T synonymous_variant 0.95
rpsA 1833928 c.387G>C synonymous_variant 0.95
rpsA 1833949 c.408T>C synonymous_variant 0.96
rpsA 1833961 c.420C>G synonymous_variant 0.97
rpsA 1833970 c.429G>C synonymous_variant 0.97
rpsA 1833979 c.438T>C synonymous_variant 0.96
rpsA 1833988 c.447C>G synonymous_variant 0.96
rpsA 1833991 c.450C>G synonymous_variant 0.95
rpsA 1834000 c.459G>C synonymous_variant 0.95
rpsA 1834012 c.471G>C synonymous_variant 0.95
rpsA 1834015 c.474G>C synonymous_variant 0.94
rpsA 1834030 c.489C>G synonymous_variant 0.94
rpsA 1834040 p.Lys167Gln missense_variant 0.95
rpsA 1834046 p.Ile169Leu missense_variant 0.94
rpsA 1834054 c.513C>G synonymous_variant 0.94
rpsA 1834093 c.552G>C synonymous_variant 0.97
rpsA 1834102 c.561T>C synonymous_variant 0.97
rpsA 1834105 c.564C>T synonymous_variant 0.96
rpsA 1834108 c.567C>G synonymous_variant 0.96
rpsA 1834114 c.573G>C synonymous_variant 0.96
rpsA 1834135 c.594G>C synonymous_variant 1.0
rpsA 1834139 c.598_599delAGinsTC synonymous_variant 1.0
rpsA 1834151 p.Asn204His missense_variant 1.0
rpsA 1834154 p.Asn205Gln missense_variant 1.0
rpsA 1834157 c.616T>C synonymous_variant 1.0
rpsA 1834162 c.621A>G synonymous_variant 1.0
rpsA 1834165 c.624A>G synonymous_variant 1.0
rpsA 1834167 c.628_629delAC frameshift_variant 1.0
rpsA 1834172 c.631_632insGG frameshift_variant 1.0
rpsA 1834177 c.636A>C synonymous_variant 1.0
rpsA 1834183 c.642T>C synonymous_variant 1.0
rpsA 1834195 c.654G>C synonymous_variant 1.0
rpsA 1834222 c.681T>C synonymous_variant 0.97
rpsA 1834231 c.690T>C synonymous_variant 1.0
rpsA 1834234 c.693G>C synonymous_variant 1.0
rpsA 1834240 c.699T>C synonymous_variant 1.0
rpsA 1834249 c.708T>C synonymous_variant 1.0
rpsA 1834252 c.711C>T synonymous_variant 1.0
rpsA 1834261 c.720A>G synonymous_variant 1.0
rpsA 1834264 c.723G>C synonymous_variant 1.0
rpsA 1834276 c.735C>T synonymous_variant 1.0
rpsA 1834279 c.738C>T synonymous_variant 1.0
rpsA 1834294 c.753G>C synonymous_variant 0.93
rpsA 1834303 c.762T>C synonymous_variant 0.93
rpsA 1834306 c.765T>C synonymous_variant 0.93
rpsA 1834327 c.786G>T synonymous_variant 0.83
rpsA 1834333 p.Asp264Glu missense_variant 0.75
rpsA 1834384 c.843A>G synonymous_variant 0.5
rpsA 1834396 c.855G>C synonymous_variant 0.5
rpsA 1834397 p.His286Val missense_variant 0.5
rpsA 1834411 c.870T>C synonymous_variant 0.5
rpsA 1834417 c.876G>C synonymous_variant 0.5
rpsA 1834423 c.882G>C synonymous_variant 0.6
rpsA 1834432 c.891G>C synonymous_variant 0.71
rpsA 1834451 c.910T>C synonymous_variant 0.95
rpsA 1834456 c.915T>G synonymous_variant 0.92
rpsA 1834468 c.927A>G synonymous_variant 0.94
rpsA 1834486 c.945G>A synonymous_variant 0.82
rpsA 1834489 c.948T>C synonymous_variant 0.97
rpsA 1834504 c.963G>C synonymous_variant 0.98
rpsA 1834528 c.987T>C synonymous_variant 0.97
rpsA 1834534 c.993C>G synonymous_variant 0.97
rpsA 1834537 p.Glu332Asp missense_variant 0.96
rpsA 1834540 c.999G>C synonymous_variant 0.96
rpsA 1834543 c.1002C>G synonymous_variant 0.96
rpsA 1834550 p.Val337Ile missense_variant 0.98
rpsA 1834555 c.1014T>C synonymous_variant 0.96
rpsA 1834556 p.Ala339Thr missense_variant 0.98
rpsA 1834567 p.Asp342Glu missense_variant 0.98
rpsA 1834570 p.Asp343Glu missense_variant 0.98
rpsA 1834573 c.1032G>C synonymous_variant 0.99
rpsA 1834603 p.Glu354Asp missense_variant 0.98
rpsA 1834609 c.1068T>C synonymous_variant 0.97
rpsA 1834612 c.1071G>C synonymous_variant 0.97
rpsA 1834618 c.1077G>C synonymous_variant 0.95
rpsA 1834619 c.1078T>C synonymous_variant 0.97
rpsA 1834627 c.1086C>G synonymous_variant 0.97
rpsA 1834633 c.1092A>G synonymous_variant 0.97
rpsA 1834637 p.Asn366Asp missense_variant 0.97
rpsA 1834647 p.Tyr369Phe missense_variant 0.97
rpsA 1834667 p.Ala376Thr missense_variant 0.98
rpsA 1834683 p.Ala381Gly missense_variant 1.0
rpsA 1834687 c.1146C>T synonymous_variant 1.0
rpsA 1834688 c.1147_1148delAGinsTC synonymous_variant 1.0
rpsA 1834720 c.1179C>G synonymous_variant 0.97
rpsA 1834732 c.1191T>C synonymous_variant 0.94
rpsA 1834735 c.1194C>G synonymous_variant 0.94
rpsA 1834738 c.1197A>G synonymous_variant 0.94
rpsA 1834747 c.1206A>G synonymous_variant 0.92
rpsA 1834751 p.Leu404Met missense_variant 0.88
rpsA 1834759 c.1218A>C synonymous_variant 0.88
rpsA 1834765 c.1224A>G synonymous_variant 0.88
rpsA 1834767 p.Lys409Thr missense_variant 0.88
rpsA 1834778 p.Glu413Gln missense_variant 0.5
rpsA 1834786 c.1245A>G synonymous_variant 0.86
rpsA 1834789 c.1248T>C synonymous_variant 0.86
rpsA 1834792 c.1251G>T synonymous_variant 0.86
rpsA 1834804 c.1263C>G synonymous_variant 0.5
katG 2156025 c.87C>A synonymous_variant 1.0
PPE35 2168814 c.1798dupA frameshift_variant 1.0
folC 2747074 c.525G>C synonymous_variant 1.0
folC 2747086 c.513A>C synonymous_variant 0.67
folC 2747089 c.510G>C synonymous_variant 0.67
folC 2747101 c.498G>A synonymous_variant 0.5
folC 2747107 c.492G>C synonymous_variant 0.5
folC 2747110 c.489T>C synonymous_variant 0.5
folC 2747120 p.Phe160Tyr missense_variant 0.5
folC 2747122 c.477G>C synonymous_variant 0.5
folC 2747128 c.471G>C synonymous_variant 0.5
thyA 3073857 c.615C>T synonymous_variant 1.0
thyA 3073863 c.609T>C synonymous_variant 1.0
thyA 3073888 p.Ser195Glu missense_variant 1.0
thyA 3073892 c.580T>C synonymous_variant 1.0
thyA 3073896 c.576C>G synonymous_variant 1.0
thyA 3073902 p.Ala190Gln missense_variant 1.0
thyA 3073908 p.Met188Phe missense_variant 1.0
thyA 3073917 c.555C>G synonymous_variant 1.0
thyA 3073920 c.552C>G synonymous_variant 1.0
thyA 3073925 c.547T>C synonymous_variant 1.0
thyA 3073929 c.543T>C synonymous_variant 1.0
thyA 3073933 c.538_539delAGinsTC synonymous_variant 1.0
thyA 3073953 c.519T>C synonymous_variant 1.0
thyA 3073959 c.513T>C synonymous_variant 1.0
thyA 3073964 p.Leu170Met missense_variant 1.0
thyA 3073968 c.504C>G synonymous_variant 1.0
thyA 3073977 c.495A>G synonymous_variant 1.0
thyA 3073983 c.489C>G synonymous_variant 1.0
thyA 3073989 c.483T>C synonymous_variant 1.0
rpoA 3877818 c.690A>G synonymous_variant 0.67
rpoA 3877824 p.Glu228Ala missense_variant 0.67
rpoA 3877827 p.Val227Glu missense_variant 0.67
rpoA 3877836 c.672A>G synonymous_variant 0.71
rpoA 3877839 c.669G>C synonymous_variant 0.75
rpoA 3877842 c.666A>C synonymous_variant 0.75
rpoA 3877854 c.652_654delTTGinsCTC synonymous_variant 0.75
rpoA 3877860 c.648C>G synonymous_variant 0.86
rpoA 3877866 c.642G>C synonymous_variant 0.86
rpoA 3877875 c.633T>C synonymous_variant 0.86
rpoA 3877886 p.Leu208Met missense_variant 0.75
rpoA 3877887 c.621G>C synonymous_variant 0.75
rpoA 3877905 c.603A>C synonymous_variant 0.75
rpoA 3877908 c.600T>C synonymous_variant 0.75
rpoA 3877914 c.594C>G synonymous_variant 0.75
rpoA 3877926 p.Leu194Ile missense_variant 0.86
rpoA 3877931 p.Ile193Val missense_variant 0.86
clpC1 4038556 p.Ile717Val missense_variant 0.5
clpC1 4038560 p.Asp715Glu missense_variant 0.6
clpC1 4038584 c.2121G>C synonymous_variant 0.67
clpC1 4038596 c.2109A>G synonymous_variant 0.6
clpC1 4038710 c.1995G>C synonymous_variant 0.5
clpC1 4038713 c.1992T>C synonymous_variant 0.5
clpC1 4038719 c.1986G>C synonymous_variant 0.69
clpC1 4038725 c.1980C>G synonymous_variant 0.78
clpC1 4038743 p.Thr654Val missense_variant 0.82
clpC1 4038756 p.Gly650Ala missense_variant 0.86
clpC1 4038758 c.1947C>T synonymous_variant 0.88
clpC1 4038767 c.1938G>C synonymous_variant 0.89
clpC1 4038770 c.1935C>T synonymous_variant 0.89
clpC1 4038782 c.1923G>C synonymous_variant 0.9
clpC1 4038791 c.1914G>C synonymous_variant 0.82
clpC1 4038794 p.Ser637Thr missense_variant 0.82
clpC1 4038811 p.Gln632Lys missense_variant 0.89
clpC1 4038812 c.1893T>C synonymous_variant 0.89
clpC1 4038815 c.1890G>C synonymous_variant 0.82
clpC1 4038842 c.1863G>C synonymous_variant 0.97
clpC1 4038845 c.1860G>C synonymous_variant 0.97
clpC1 4038860 c.1845G>C synonymous_variant 0.97
clpC1 4038878 c.1827A>G synonymous_variant 0.99
clpC1 4038905 c.1800A>C synonymous_variant 0.98
clpC1 4038908 c.1797C>G synonymous_variant 0.98
clpC1 4038911 c.1794G>T synonymous_variant 0.98
clpC1 4038914 c.1791G>C synonymous_variant 0.98
clpC1 4038917 c.1788C>T synonymous_variant 0.98
clpC1 4038923 c.1782A>G synonymous_variant 0.98
clpC1 4038926 c.1779G>C synonymous_variant 0.98
clpC1 4038932 c.1773G>C synonymous_variant 0.99
clpC1 4038941 c.1764G>C synonymous_variant 1.0
clpC1 4038953 c.1752A>G synonymous_variant 1.0
clpC1 4038956 c.1749T>C synonymous_variant 1.0
clpC1 4038965 c.1740T>C synonymous_variant 1.0
clpC1 4038971 c.1734T>C synonymous_variant 1.0
clpC1 4038974 c.1731T>C synonymous_variant 1.0
clpC1 4038980 c.1725C>T synonymous_variant 1.0
clpC1 4038983 p.Asp574Glu missense_variant 1.0
clpC1 4038989 c.1716T>C synonymous_variant 1.0
clpC1 4038997 c.1708T>C synonymous_variant 1.0
clpC1 4039001 p.Asn568Ala missense_variant 1.0
clpC1 4039007 c.1698G>C synonymous_variant 0.93
clpC1 4039022 c.1683A>G synonymous_variant 0.98
clpC1 4039025 c.1680C>G synonymous_variant 0.97
clpC1 4039037 c.1668T>C synonymous_variant 0.93
clpC1 4039064 c.1641C>T synonymous_variant 0.93
clpC1 4039067 c.1638G>C synonymous_variant 0.93
clpC1 4039079 c.1626C>G synonymous_variant 0.86
clpC1 4039085 c.1620A>G synonymous_variant 0.75
clpC1 4039091 c.1614G>C synonymous_variant 0.62
clpC1 4039097 c.1608G>C synonymous_variant 0.4
clpC1 4039499 c.1206G>C synonymous_variant 0.86
clpC1 4039507 p.Ile400Val missense_variant 0.86
clpC1 4039508 c.1197G>C synonymous_variant 0.86
clpC1 4039517 c.1188C>G synonymous_variant 0.86
clpC1 4039526 c.1179G>T synonymous_variant 0.86
clpC1 4039547 p.Ala386Ser missense_variant 0.83
clpC1 4039553 c.1152C>G synonymous_variant 0.83
clpC1 4039559 c.1146C>G synonymous_variant 0.83
clpC1 4039562 c.1143C>G synonymous_variant 0.83
clpC1 4039565 c.1140G>C synonymous_variant 0.83
clpC1 4039570 p.Met379Leu missense_variant 0.83
clpC1 4039575 p.Ala377Gln missense_variant 0.83
clpC1 4039577 c.1128T>C synonymous_variant 0.67
clpC1 4039580 c.1125C>G synonymous_variant 0.83
clpC1 4039586 c.1119G>C synonymous_variant 0.83
clpC1 4039592 c.1113G>C synonymous_variant 1.0
clpC1 4039598 c.1107C>T synonymous_variant 1.0
clpC1 4039602 p.Ala368Gln missense_variant 1.0
clpC1 4039611 p.Arg365Lys missense_variant 1.0
clpC1 4039616 c.1089G>C synonymous_variant 1.0
clpC1 4039694 c.1011G>C synonymous_variant 1.0
clpC1 4039714 p.Tyr331His missense_variant 1.0
clpC1 4039724 c.981A>G synonymous_variant 1.0
clpC1 4039748 c.957G>C synonymous_variant 1.0
clpC1 4039751 c.954A>G synonymous_variant 1.0
clpC1 4039757 c.948A>G synonymous_variant 1.0
clpC1 4039760 c.945T>C synonymous_variant 1.0
clpC1 4039766 c.939T>C synonymous_variant 1.0
clpC1 4039769 c.936C>G synonymous_variant 1.0
clpC1 4039778 c.927A>G synonymous_variant 1.0
clpC1 4039790 c.915C>G synonymous_variant 1.0
clpC1 4039805 c.900C>T synonymous_variant 0.82
clpC1 4039817 c.888A>T synonymous_variant 1.0
clpC1 4039820 c.885T>C synonymous_variant 1.0
clpC1 4039823 c.882T>C synonymous_variant 1.0
clpC1 4039829 c.874_876delTTGinsCTC synonymous_variant 1.0
clpC1 4039838 p.Leu289Ile missense_variant 1.0
clpC1 4039850 c.855T>C synonymous_variant 1.0
clpC1 4039865 c.840T>C synonymous_variant 1.0
clpC1 4039871 p.Thr278Gln missense_variant 1.0
clpC1 4039898 c.807C>G synonymous_variant 1.0
clpC1 4039904 c.801A>G synonymous_variant 1.0
clpC1 4039916 c.789T>C synonymous_variant 0.95
clpC1 4039928 c.775_777delAGCinsTCG synonymous_variant 0.93
clpC1 4039934 c.771G>C synonymous_variant 0.93
clpC1 4039937 c.768G>C synonymous_variant 0.93
clpC1 4039946 c.759A>T synonymous_variant 0.95
clpC1 4039955 c.750G>T synonymous_variant 0.9
clpC1 4039960 p.Thr249Ser missense_variant 0.88
clpC1 4039964 c.741C>G synonymous_variant 0.88
clpC1 4039979 c.726C>G synonymous_variant 0.83
clpC1 4039982 c.723G>C synonymous_variant 0.83
clpC1 4039988 c.717C>G synonymous_variant 0.8
clpC1 4039994 p.Glu237Arg missense_variant 0.75
clpC1 4039998 p.Gly236Asn missense_variant 0.75
clpC1 4040002 p.His235Asn missense_variant 0.75
clpC1 4040010 p.Ala232Asp missense_variant 0.8
clpC1 4040013 p.Gln231Leu missense_variant 0.8
clpC1 4040015 c.690G>C synonymous_variant 0.8
clpC1 4040021 c.684A>C synonymous_variant 0.8
clpC1 4040024 c.681A>G synonymous_variant 0.82
clpC1 4040033 c.672G>C synonymous_variant 0.85
clpC1 4040045 c.660C>G synonymous_variant 0.86
clpC1 4040063 c.642G>C synonymous_variant 0.77
clpC1 4040087 c.618G>C synonymous_variant 0.92
clpC1 4040090 c.615T>G synonymous_variant 0.83
clpC1 4040093 c.612C>G synonymous_variant 0.83
clpC1 4040107 p.Val200Ile missense_variant 1.0
clpC1 4040108 c.597G>C synonymous_variant 0.8
clpC1 4040134 p.Ile191Val missense_variant 1.0
clpC1 4040135 c.570C>G synonymous_variant 1.0
clpC1 4040144 c.561G>C synonymous_variant 1.0
clpC1 4040147 c.558A>G synonymous_variant 1.0
clpC1 4040153 c.552A>G synonymous_variant 1.0
clpC1 4040291 c.414G>C synonymous_variant 0.67
clpC1 4040306 c.399G>C synonymous_variant 0.7
clpC1 4040309 p.Thr132Pro missense_variant 0.7
clpC1 4040315 p.Glu130Asp missense_variant 0.7
clpC1 4040324 c.381G>C synonymous_variant 0.7
clpC1 4040354 c.351A>G synonymous_variant 1.0
clpC1 4040357 c.348T>C synonymous_variant 0.9
clpC1 4040363 c.342A>C synonymous_variant 0.9
clpC1 4040369 c.336C>G synonymous_variant 0.9
clpC1 4040375 c.330G>C synonymous_variant 0.9
clpC1 4040380 c.325T>C synonymous_variant 0.9
clpC1 4040381 c.324T>C synonymous_variant 0.9
clpC1 4040387 c.318A>G synonymous_variant 0.9
clpC1 4040393 c.312G>C synonymous_variant 0.9
clpC1 4040402 p.Asn101Lys missense_variant 0.89
clpC1 4040411 c.294T>C synonymous_variant 0.8
clpC1 4040420 c.285G>C synonymous_variant 0.67
clpC1 4040423 c.282A>G synonymous_variant 0.67
clpC1 4040426 c.279T>C synonymous_variant 0.67
embC 4241384 p.Pro508Thr missense_variant 1.0
embA 4242970 c.-263C>T upstream_gene_variant 1.0
embB 4249640 c.3127T>C synonymous_variant 1.0
aftB 4267858 p.Ile327Val missense_variant 1.0
aftB 4269351 c.-515C>T upstream_gene_variant 1.0
ubiA 4269387 p.Glu149Asp missense_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0