Rv3596c - c.1890G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
79 Sensitive
12 RR-TB
64 HR-TB
22 MDR-TB
5 Pre-XDR-TB
2 XDR-TB
94 Other
lineage Counts
| lineage | Count |
|---|---|
| M.canetti;lineage2.2 | 2 |
| lineage4.9 | 138 |
| lineage2.2.1 | 25 |
| La3;lineage4.9 | 11 |
| lineage2.2.1;lineage4.9 | 1 |
| lineage4.8 | 4 |
| 4 | |
| lineage4.1.1.3 | 4 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| La2;lineage2.2 | 1 |
| La1.8.1 | 3 |
| La1.7;lineage4.9 | 12 |
| lineage2.2;lineage4 | 1 |
| lineage2.2;lineage4.9 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage4.4.1.2 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage4.3.4.2.1 | 4 |
| lineage4.1.1.2 | 1 |
| lineage4.6.2.2 | 3 |
| La1;lineage2;lineage4.9 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| lineage4.9;lineage9 | 1 |
| La1;lineage4.9 | 2 |
| lineage3 | 6 |
| lineage4.2.1 | 1 |
| La1.7.1 | 1 |
| lineage2.2.1.2 | 1 |
| lineage2.2.1.1 | 2 |
| lineage4.2.2.2 | 1 |
| lineage4.1.2 | 2 |
| lineage4.3.3 | 1 |
| La1.2.BCG | 1 |
| lineage4.3.2.1 | 3 |
| La1.7;M.canetti;lineage4.9 | 3 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| La3;lineage4 | 1 |
| lineage3.1.2.1 | 1 |
| lineage4.5 | 2 |
| lineage1.1.2 | 3 |
| lineage1.2.2.2 | 1 |
| lineage4.1 | 1 |
| lineage4 | 2 |
| lineage6.1.3 | 1 |
| lineage6 | 2 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage4.8;lineage4.9 | 2 |
| lineage1.1.1 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| lineage2.2 | 1 |
| La2;lineage4.9 | 1 |
| lineage4.9.1 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage4.1.2.1 | 1 |
| lineage4.9;lineage7 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 278 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | ERR926156 | Sensitive | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR4797474 | Sensitive | lineage4.9 | None | SRR1167384 | Other | La3;lineage4.9 | None | ERR2693252 | Sensitive | lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | ERR4815310 | Other | lineage2.2.1;lineage4.9 | None | ERR4815471 | Sensitive | lineage4.9 | None | SRR6045832 | Other | lineage4.9 | None | ERR323062 | Sensitive | lineage4.9 | None | ERR3283042 | Other | lineage4.9 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR12015084 | Other | lineage4.8 | None | ERR137286 | Other | lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | ERR1063896 | Sensitive | None | ERR2199988 | MDR-TB | lineage4.1.1.3 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | ERR550637 | MDR-TB | lineage4.1.1.3 | None | SRR1791747 | Other | La1.8.1 | None | ERR12015086 | RR-TB | lineage4.8 | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR6358979 | Other | lineage4.9 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | ERR702405 | Sensitive | lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR736848 | Other | lineage4.9 | None | SRR16156832 | RR-TB | lineage2.2;lineage4 | None | ERR4815550 | Other | lineage2.2;lineage4.9 | None | ERR369161 | Sensitive | lineage4.9 | None | ERR108125 | RR-TB | lineage4.9 | None | ERR216965 | Sensitive | lineage4.9 | None | SRR5341425 | Other | lineage4.9 | None | ERR4816964 | Sensitive | lineage4.9 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR13264981 | Sensitive | La1.7;lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR4821655 | HR-TB | lineage4.9 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | ERR12015085 | Other | lineage4.8 | None | ERR4816852 | Other | lineage4.9 | None | ERR4818252 | Sensitive | lineage4.1.1.2 | None | ERR4819809 | HR-TB | lineage4.6.2.2 | None | ERR4797184 | Sensitive | lineage4.9 | None | SAMEA2533358 | MDR-TB | lineage4.1.1.3 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | ERR6359069 | Sensitive | lineage4.9 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR6359074 | HR-TB | lineage4.9 | None | SRR12708392 | Other | lineage2.2.1 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR9896144 | Other | lineage3 | None | ERR990545 | Other | lineage3 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | ERR3283021 | HR-TB | lineage4.9 | None | ERR7821163 | Other | lineage2.2.1 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799378 | Sensitive | lineage4.9 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | SRR5341453 | Other | lineage4.9 | None | ERR6358951 | Sensitive | lineage4.9 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR4769493 | Other | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR1035122 | Sensitive | lineage4.9 | None | SRR18909918 | Other | lineage2.2.1.1 | None | ERR176643 | Other | La3;lineage4.9 | None | SRR3675246 | Other | lineage4.9 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | SRR9971113 | Other | lineage2.2.1 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SRR5341308 | Sensitive | lineage4.9 | None | ERR3797086 | Sensitive | lineage4.9 | None | SRR5341467 | Other | lineage4.9 | None | SRR6044835 | Other | lineage4.9 | None | ERR323085 | Sensitive | lineage4.9 | None | ERR11465511 | Other | lineage4.3.4.2.1 | None | SRR5341299 | HR-TB | lineage4.9 | None | SRR1915487 | Other | La1.2.BCG | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR6359070 | Sensitive | lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | ERR11252612 | Other | La3;lineage4.9 | None | SRR20632814 | Sensitive | lineage4.9 | None | SRR5341387 | Other | lineage4.9 | None | ERR212001 | HR-TB | None | ERR405209 | Sensitive | La1.7;lineage4.9 | None | SRR6045555 | Other | lineage4.9 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | ERR6866807 | Other | lineage4.9 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | ERR4796577 | HR-TB | None | ERR4816322 | Other | lineage4.9 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR926157 | Sensitive | lineage4.9 | None | SRR1158918 | Sensitive | lineage4.9 | None | SRR1180137 | Other | lineage2.2.1 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR323066 | Sensitive | lineage4.9 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR11252736 | Other | lineage4.9 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR3283028 | Other | La3;lineage4 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR502511 | Sensitive | lineage4.9 | None | ERR9119669 | HR-TB | lineage4.9 | None | ERR4815022 | Other | lineage3.1.2.1 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | ERR323107 | Sensitive | lineage4.9 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | SRR5341300 | HR-TB | lineage4.9 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | SRR3675235 | Sensitive | lineage4.9 | None | SRR29097004 | Other | lineage3 | None | SRR16156775 | Other | lineage4.9 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | ERR4769433 | RR-TB | lineage4.9 | None | SRR1169306 | Other | La3;lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | SRR5341366 | Sensitive | lineage4.9 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR4816548 | HR-TB | lineage4.5 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR752229 | Other | lineage4.5 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | ERR9786526 | Other | lineage4.1 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR3273109 | HR-TB | lineage4 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR323037 | Other | lineage4.9 | None | SRR5341303 | Sensitive | lineage4.9 | None | ERR9787336 | RR-TB | lineage6 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR926164 | Other | lineage4.9 | None | SRR6046594 | Sensitive | lineage4.9 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR1034634 | HR-TB | lineage4.9 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | SRR6046485 | Other | lineage4.9 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | ERR11252664 | Other | lineage2.2.1 | None | ERR4769442 | Sensitive | lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | ERR926165 | Sensitive | lineage4.9 | None | SRR6045002 | RR-TB | lineage4.9 | None | SRR21690362 | Other | lineage1.1.1 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | SRR6045795 | Sensitive | lineage2.2.1 | None | ERR4796254 | Sensitive | lineage4.9 | None | SRR7236177 | Other | La1.8.1 | None | SRR7535082 | Sensitive | lineage4.9 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | ERR4819357 | Sensitive | lineage4.9 | None | SRR1183049 | RR-TB | lineage2.2 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | SRR1159378 | Other | lineage4.9 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR5341455 | Sensitive | lineage4.9 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR6044780 | Sensitive | lineage4.9 | None | SRR1181020 | Other | lineage2.2.1 | None | ERR176741 | Other | lineage4.9 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | SRR1165628 | Other | La3;lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR4798099 | Other | lineage4.9 | None | SRR6046492 | Other | lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | SRR1169249 | Other | lineage4.9 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | ERR245675 | Sensitive | lineage1.1.2 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR400529 | Other | lineage3 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR245758 | Other | lineage4.9.1 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR11489020 | MDR-TB | lineage2.2.1 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | ERR2513259 | Other | lineage3 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR5341461 | HR-TB | lineage4.9 | None | ERR4819933 | Sensitive | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | SRR10808399 | Sensitive | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR3797085 | Other | lineage4.9 | None | ERR9787030 | Sensitive | lineage6 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR9786525 | Other | lineage4 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR926163 | Other | lineage4.9 | None | ERR751326 | Other | lineage4.9 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR29096659 | Sensitive | lineage4.9 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR212138 | HR-TB | lineage4.9 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR4596910 | Sensitive | lineage4.9 | None | ERR971389 | Sensitive | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR6866639 | Other | lineage4.9 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR5341310 | Other | lineage1.1.2 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR7240033 | Other | La1.8.1 | None | ERR176751 | Other | lineage4.9 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR9971112 | Other | lineage2.2.1 | None | ERR3797065 | RR-TB | lineage4.9 | None | ERR5311094 | HR-TB | lineage4.9 | None | ERR736834 | Sensitive | lineage4.9 | None | SRR3675585 | Sensitive | lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR736831 | Other | lineage4.9 | None | SRR5341469 | HR-TB | lineage4.9 | None | ERR9786843 | Other | None | ERR212033 | Other | lineage4.9 | None |
|---|
