Rv3596c - c.1890G>C
Drug resistance types
60 Sensitive
8 RR-TB
74 HR-TB
24 MDR-TB
11 Pre-XDR-TB
0 XDR-TB
79 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.3.2.1 | 1 |
| lineage4.3.3 | 1 |
| lineage4 | 62 |
| lineage2.2.1 | 25 |
| lineage4.4.1.2 | 1 |
| 57 | |
| lineage2.2 | 6 |
| lineage4.9 | 42 |
| lineage4.3.4.2.1 | 4 |
| lineage4.8 | 4 |
| La1.8.1 | 4 |
| lineage3 | 6 |
| lineage6.3.1 | 1 |
| lineage4;lineage3.1 | 1 |
| La1.2 | 3 |
| La1.3 | 2 |
| lineage4.9;La1.3 | 1 |
| lineage1.1.2 | 3 |
| La1 | 1 |
| lineage4.9.1 | 1 |
| lineage4.5 | 2 |
| lineage4.1.2.1 | 2 |
| lineage4.6.2.2 | 4 |
| lineage4.8;lineage4.1 | 2 |
| lineage6.1.3 | 1 |
| lineage6 | 2 |
| La3 | 1 |
| lineage4.2.1 | 2 |
| La1.7.1 | 1 |
| lineage7;lineage2.2.1.2 | 1 |
| lineage2.2.1.1 | 2 |
| lineage2.1 | 2 |
| lineage4.3 | 1 |
| lineage3.1.2.1 | 1 |
| lineage4.1.1.2 | 1 |
| lineage4.1 | 1 |
| lineage4.9;lineage2.1 | 1 |
| lineage4.2.2.2 | 1 |
| lineage4.1.2 | 2 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 256 |
Geographic prevalence
Country level data for this variant is available for 1 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | ERR323107 | Other | lineage4 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR9971113 | Other | lineage2.2.1 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR323108 | HR-TB | lineage4 | None | ERR323066 | Sensitive | lineage4 | None | ERR11489020 | MDR-TB | lineage2.2.1 | None | ERR323085 | Sensitive | lineage4 | None | ERR1063857 | HR-TB | None | ERR067699 | HR-TB | lineage4 | None | ERR1034652 | Other | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1023525 | HR-TB | lineage4 | None | ERR1034634 | HR-TB | None | ERR1035122 | Sensitive | None | ERR1063896 | Sensitive | None | ERR1063883 | Sensitive | lineage4 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR133825 | Sensitive | lineage4 | None | ERR11465511 | Sensitive | lineage4.3.4.2.1 | None | ERR323115 | Sensitive | lineage4 | None | ERR137286 | Sensitive | lineage4 | None | ERR12015086 | Other | lineage4.8 | None | ERR3283014 | HR-TB | None | ERR12015084 | Other | lineage4.8 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283021 | HR-TB | None | ERR3283031 | HR-TB | None | ERR3283025 | HR-TB | None | ERR3283028 | Other | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283058 | Other | lineage4.9 | None | ERR3283046 | MDR-TB | lineage4.9 | None | ERR3283040 | HR-TB | None | ERR3283047 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR3283055 | HR-TB | None | ERR3797043 | HR-TB | None | ERR3797015 | HR-TB | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797046 | HR-TB | None | ERR3797036 | HR-TB | None | ERR3797048 | HR-TB | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797060 | Other | La1.8.1 | None | ERR3797063 | HR-TB | None | ERR400529 | Other | lineage3 | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797073 | HR-TB | La1.8.1 | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797064 | Sensitive | None | ERR3797081 | Sensitive | lineage4 | None | ERR3797086 | Other | lineage4.9 | None | ERR3797087 | Sensitive | lineage4 | None | ERR4024991 | Other | None | ERR4192359 | Sensitive | lineage6.3.1 | None | ERR405209 | Sensitive | lineage4 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4188124 | Other | La1.8.1 | None | ERR4188247 | HR-TB | None | ERR473323 | HR-TB | lineage4.9 | None | ERR4596910 | Sensitive | lineage4 | None | ERR473303 | Sensitive | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR473367 | Sensitive | lineage4.9 | None | ERR4769419 | Other | lineage4.9 | None | ERR4769433 | Pre-XDR-TB | lineage4.9 | None | ERR4769418 | Other | La1.2 | None | ERR4769442 | HR-TB | lineage4 | None | ERR4769436 | Other | La1.3 | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769495 | Other | La1.3 | None | ERR4769497 | HR-TB | La1.2 | None | ERR4769521 | HR-TB | None | ERR4796254 | Sensitive | lineage4 | None | ERR4769474 | HR-TB | lineage4 | None | ERR4769493 | Pre-XDR-TB | lineage4.9;La1.3 | None | ERR4796929 | Sensitive | lineage4 | None | ERR4796577 | MDR-TB | None | ERR4797474 | Other | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR4797264 | Sensitive | None | ERR4797184 | Sensitive | lineage4 | None | ERR4798099 | Other | None | ERR4798262 | HR-TB | La1 | None | ERR4799378 | Sensitive | lineage4 | None | ERR4811493 | HR-TB | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR12015085 | Other | lineage4.8 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR6358951 | HR-TB | lineage4 | None | ERR6198317 | Other | La1.2 | None | ERR6359070 | Other | lineage4.9 | None | ERR6358979 | Other | None | ERR6359069 | Other | lineage4.9 | None | ERR6866022 | Other | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR6866547 | Sensitive | lineage4 | None | ERR245758 | Other | lineage4.9.1 | None | ERR6866639 | Other | None | ERR6866807 | HR-TB | lineage4 | None | ERR736848 | HR-TB | None | ERR736831 | HR-TB | lineage4.9 | None | ERR736834 | Sensitive | lineage4 | None | ERR736835 | HR-TB | None | ERR736839 | Other | None | ERR7821163 | Other | lineage2.2.1 | None | ERR736856 | HR-TB | lineage4 | None | ERR752229 | Other | lineage4.5 | None | ERR736872 | Sensitive | lineage4 | None | ERR751326 | Sensitive | lineage4 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9119669 | HR-TB | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9786526 | Other | lineage4.8;lineage4.1 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR9896144 | Other | lineage3 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR9787336 | Other | lineage6 | None | ERR9786843 | Other | None | ERR9787030 | Sensitive | lineage6 | None | SRR10315567 | Other | lineage2.2.1 | None | ERR990545 | Other | lineage3 | None | SRR1167384 | Other | lineage4 | None | SRR10809074 | Sensitive | lineage4 | None | SRR1158918 | Sensitive | lineage4 | None | SRR10808399 | Sensitive | lineage4 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | SRR10808805 | Sensitive | None | SRR1169306 | Other | None | SRR1169249 | Other | La3 | None | SRR1173568 | Other | lineage4.9 | None | SRR1173310 | MDR-TB | None | SRR1175491 | MDR-TB | lineage4 | None | SRR1173777 | Other | lineage4 | None | SRR1180996 | HR-TB | lineage4 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR14801749 | Sensitive | None | SRR1183049 | Other | lineage2.2 | None | SRR1184329 | MDR-TB | lineage4.9 | None | SRR16156697 | MDR-TB | lineage2.2.1 | None | SRR1791747 | Other | La1.8.1 | None | SRR16156832 | RR-TB | None | SRR16156775 | Other | lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR20632814 | Sensitive | lineage4 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR21677886 | Sensitive | lineage4.9 | None | ERR176751 | HR-TB | None | SRR3675488 | HR-TB | None | ERR4815310 | Other | None | ERR161034 | Other | lineage4.3.4.2.1 | None | SRR3675246 | Sensitive | lineage4 | None | ERR702405 | Sensitive | lineage2.1 | None | SRR3675222 | Other | None | ERR4815471 | Other | lineage4.9 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | ERR176643 | HR-TB | None | ERR176568 | Other | lineage4.3 | None | SRR3675501 | HR-TB | None | ERR4815550 | Other | lineage4 | None | ERR212001 | HR-TB | None | ERR4816964 | Other | lineage4.9 | None | ERR4815022 | Other | lineage3.1.2.1 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR212033 | HR-TB | None | ERR212138 | HR-TB | lineage4 | None | ERR4816322 | Other | lineage4.9 | None | ERR4816548 | MDR-TB | lineage4.5 | None | ERR216965 | HR-TB | lineage4.9 | None | SRR3743401 | MDR-TB | lineage2.2.1 | None | ERR4816702 | RR-TB | lineage4.6.2.2 | None | ERR4816852 | Other | lineage4.9 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR245675 | Sensitive | lineage1.1.2 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR2446566 | Other | lineage4.1 | None | ERR2513259 | Other | lineage3 | None | SRR5341461 | Sensitive | lineage4 | None | ERR4819051 | Other | lineage4 | None | SRR5007168 | RR-TB | lineage4.9 | None | ERR3275709 | HR-TB | lineage3 | nl | SRR5341366 | Sensitive | lineage4 | None | SRR5341387 | Other | lineage4 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | ERR4819357 | Other | lineage4.9 | None | SRR5341425 | Other | lineage4 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341455 | Sensitive | lineage4 | None | ERR4821655 | Sensitive | lineage4 | None | SRR5341300 | Other | lineage4 | None | ERR4819809 | HR-TB | lineage4.6.2.2 | None | ERR4819933 | Other | lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341469 | Other | lineage4 | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341303 | RR-TB | lineage4 | None | SRR5341308 | Sensitive | lineage4 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR5341467 | Other | lineage4 | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | SRR6045795 | HR-TB | lineage2.2.1 | None | SRR6045664 | Other | lineage4.2.1 | None | SRR6046141 | Other | lineage4.9 | None | SRR6045555 | HR-TB | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6044780 | Other | lineage4.9 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6046133 | HR-TB | None | SRR6045158 | Other | lineage4.9 | None | SRR6046492 | Other | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6046362 | HR-TB | None | ERR4830353 | Other | None | SRR6046460 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | SRR6511621 | HR-TB | None | ERR323037 | HR-TB | lineage4 | None | ERR4831117 | HR-TB | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR502510 | Sensitive | lineage4 | None | ERR4831618 | MDR-TB | lineage2.1 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | SRR6981961 | Sensitive | lineage2.2.1 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR7535082 | Sensitive | lineage4 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR9970978 | Sensitive | lineage4.1.2 | None |
|---|
