Run ID: ERR4819809
Sample name:
Date: 2024-10-04T05:25:49.022776
Number of reads: 1884233
Percentage reads mapped: 63.6
Median coverage: 42.0
Strain: lineage4.6.2.2
Spoligotype:
Drug-resistance: HR-TB
Lineage | Family | RDs | Frequency |
---|---|---|---|
lineage4.6 | Euro-American | None | 0.99 |
lineage4.6.2 | Euro-American | RD726 | 1.0 |
lineage4.6.2.2 | Euro-American (Cameroon) | RD726 | 1.0 |
lineage4 | Euro-American | None | 1.0 |
Drug | Resistance | Supporting mutations | WHO confidence | Comment |
---|---|---|---|---|
rifampicin | ||||
isoniazid | inhA | c.-777C>T | Assoc w R | Alias fabG1_c.-15C>T. Low-level resistance (multiple, genetically linked low-level resistance mutations are additive and confer high-level resistance) |
ethambutol | ||||
pyrazinamide | ||||
streptomycin | ||||
fluoroquinolones | ||||
moxifloxacin | ||||
ofloxacin | ||||
levofloxacin | ||||
ciprofloxacin | ||||
aminoglycosides | ||||
amikacin | ||||
capreomycin | ||||
kanamycin | ||||
cycloserine | ||||
ethionamide | inhA | c.-777C>T | Assoc w R | Alias fabG1_c.-15C>T |
clofazimine | ||||
para-aminosalicylic_acid | ||||
delamanid | ||||
bedaquiline | ||||
linezolid |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs | Confidence | Comment |
---|---|---|---|---|---|---|---|
inhA | 1673425 | c.-777C>T | upstream_gene_variant | 1.0 | ethionamide | Assoc w R | Alias fabG1_c.-15C>T |
isoniazid | Assoc w R | Alias fabG1_c.-15C>T. Low-level resistance (multiple, genetically linked low-level resistance mutations are additive and confer high-level resistance) |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs | Confidence |
---|---|---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 | levofloxacin | Not assoc w R |
moxifloxacin | Not assoc w R | |||||
gyrA | 7391 | c.90C>T | synonymous_variant | 0.17 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 7394 | c.93T>C | synonymous_variant | 0.17 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | ||||||
gyrA | 7397 | c.96G>C | synonymous_variant | 0.17 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7406 | c.105G>C | synonymous_variant | 0.2 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7412 | c.111C>G | synonymous_variant | 0.23 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7433 | c.132G>A | synonymous_variant | 0.21 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7442 | c.141G>C | synonymous_variant | 0.25 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7457 | c.156T>C | synonymous_variant | 0.24 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7463 | c.162G>C | synonymous_variant | 0.25 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7472 | c.171T>C | synonymous_variant | 0.24 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | ||||||
gyrA | 7475 | c.174A>G | synonymous_variant | 0.26 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 7480 | p.Phe60Tyr | missense_variant | 0.28 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7484 | c.183T>C | synonymous_variant | 0.28 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7499 | c.198G>C | synonymous_variant | 0.3 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7526 | c.225G>C | synonymous_variant | 0.24 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 7532 | c.231T>G | synonymous_variant | 0.21 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 7541 | c.240C>G | synonymous_variant | 0.2 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 7547 | c.246C>T | synonymous_variant | 0.18 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 7565 | c.264C>T | synonymous_variant | 0.16 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 7569 | p.Ala90Ser | missense_variant | 0.14 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 | levofloxacin | Not assoc w R |
moxifloxacin | Not assoc w R | |||||
gyrA | 7775 | c.474C>T | synonymous_variant | 0.29 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 7784 | c.483A>G | synonymous_variant | 0.38 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7790 | c.489G>C | synonymous_variant | 0.34 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7796 | c.495G>T | synonymous_variant | 0.34 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7799 | c.498A>G | synonymous_variant | 0.31 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 7802 | c.501C>G | synonymous_variant | 0.33 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7832 | c.531G>T | synonymous_variant | 0.24 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7835 | c.534A>G | synonymous_variant | 0.24 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 7841 | c.540C>T | synonymous_variant | 0.25 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 7847 | c.546G>C | synonymous_variant | 0.24 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7859 | c.558A>C | synonymous_variant | 0.26 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 | levofloxacin | Not assoc w R |
moxifloxacin | Not assoc w R | |||||
mshA | 575785 | c.438T>C | synonymous_variant | 0.14 | isoniazid | |
ethionamide | ||||||
mshA | 575795 | p.Ile150Val | missense_variant | 0.2 | isoniazid | |
ethionamide | ||||||
mshA | 575800 | c.453G>C | synonymous_variant | 0.21 | isoniazid | |
ethionamide | ||||||
mshA | 575803 | c.456C>T | synonymous_variant | 0.2 | isoniazid | Not assoc w R - Interim |
ethionamide | ||||||
mshA | 575821 | c.474G>C | synonymous_variant | 0.2 | isoniazid | |
ethionamide | ||||||
mshA | 575842 | c.495G>C | synonymous_variant | 0.21 | isoniazid | |
ethionamide | ||||||
mshA | 575864 | c.517T>C | synonymous_variant | 0.16 | isoniazid | |
ethionamide | ||||||
nusG | 734472 | c.219T>G | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
nusG | 734475 | c.222T>C | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
nusG | 734478 | c.225C>G | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
nusG | 734499 | c.246G>C | synonymous_variant | 0.18 | rifampicin | |
rpoB | 760283 | c.477G>C | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoB | 760298 | c.492G>C | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoB | 760310 | c.504G>C | synonymous_variant | 0.15 | rifampicin | |
rpoB | 760316 | c.510C>G | synonymous_variant | 0.16 | rifampicin | |
rpoB | 760325 | c.519G>C | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoB | 760331 | c.525G>C | synonymous_variant | 0.15 | rifampicin | |
rpoB | 760334 | c.528G>T | synonymous_variant | 0.16 | rifampicin | |
rpoB | 760340 | c.534G>T | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoB | 760406 | c.600G>T | synonymous_variant | 0.16 | rifampicin | |
rpoB | 760407 | p.Ser201Gly | missense_variant | 0.16 | rifampicin | Uncertain significance |
rpoB | 760415 | c.609C>T | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoB | 760424 | c.618C>G | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoB | 760430 | c.624T>C | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoB | 760457 | c.651C>T | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoB | 760463 | c.657C>T | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoB | 760475 | c.669A>G | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoB | 760478 | c.672C>T | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoB | 760481 | c.675G>T | synonymous_variant | 0.17 | rifampicin | |
rpoB | 760484 | c.678A>G | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoB | 760646 | c.840C>G | synonymous_variant | 0.14 | rifampicin | Not assoc w R - Interim |
rpoB | 760655 | c.849A>G | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoB | 760661 | c.855A>C | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoB | 760670 | c.864G>C | synonymous_variant | 0.18 | rifampicin | |
rpoB | 760674 | c.868T>C | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoB | 760841 | c.1035T>C | synonymous_variant | 0.2 | rifampicin | Not assoc w R - Interim |
rpoB | 760859 | c.1053T>C | synonymous_variant | 0.28 | rifampicin | |
rpoB | 760862 | c.1056G>C | synonymous_variant | 0.29 | rifampicin | Not assoc w R - Interim |
rpoB | 760877 | c.1071G>C | synonymous_variant | 0.27 | rifampicin | |
rpoB | 760883 | c.1077G>C | synonymous_variant | 0.28 | rifampicin | |
rpoB | 760886 | c.1080A>G | synonymous_variant | 0.28 | rifampicin | |
rpoB | 760887 | p.Thr361Val | missense_variant | 0.28 | rifampicin | Uncertain significance |
rpoB | 760910 | c.1104C>T | synonymous_variant | 0.28 | rifampicin | Not assoc w R - Interim |
rpoB | 760916 | c.1110C>T | synonymous_variant | 0.22 | rifampicin | Not assoc w R - Interim |
rpoB | 760919 | c.1113C>T | synonymous_variant | 0.22 | rifampicin | |
rpoB | 760925 | c.1119T>C | synonymous_variant | 0.22 | rifampicin | |
rpoB | 761111 | c.1305C>T | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoB | 761132 | c.1326G>T | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoB | 761133 | c.1327T>C | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoB | 761147 | c.1341C>T | synonymous_variant | 0.2 | rifampicin | Not assoc w R - Interim |
rpoB | 761150 | c.1344A>T | synonymous_variant | 0.2 | rifampicin | Not assoc w R - Interim |
rpoB | 761165 | c.1359G>C | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoB | 761180 | c.1374A>C | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoB | 761189 | c.1383T>C | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoB | 761234 | c.1428G>C | synonymous_variant | 0.21 | rifampicin | Not assoc w R - Interim |
rpoB | 761249 | c.1443A>G | synonymous_variant | 0.23 | rifampicin | Not assoc w R - Interim |
rpoB | 761261 | c.1455G>T | synonymous_variant | 0.25 | rifampicin | Not assoc w R - Interim |
rpoB | 761264 | c.1458C>G | synonymous_variant | 0.26 | rifampicin | Not assoc w R - Interim |
rpoB | 761282 | c.1476C>T | synonymous_variant | 0.27 | rifampicin | |
rpoB | 761288 | c.1482G>T | synonymous_variant | 0.27 | rifampicin | |
rpoB | 761318 | c.1512G>T | synonymous_variant | 0.25 | rifampicin | Not assoc w R - Interim |
rpoB | 761327 | c.1521A>G | synonymous_variant | 0.21 | rifampicin | Not assoc w R - Interim |
rpoB | 761330 | c.1524G>C | synonymous_variant | 0.2 | rifampicin | |
rpoB | 761345 | c.1539G>C | synonymous_variant | 0.2 | rifampicin | |
rpoB | 761354 | c.1548C>T | synonymous_variant | 0.2 | rifampicin | |
rpoB | 761360 | c.1554T>C | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoB | 761362 | p.Ser519Thr | missense_variant | 0.15 | rifampicin | |
rpoB | 761367 | p.Glu521Gln | missense_variant | 0.16 | rifampicin | |
rpoB | 761414 | c.1608A>G | synonymous_variant | 1.0 | rifampicin | Not assoc w R - Interim |
rpoB | 761600 | c.1794T>C | synonymous_variant | 0.28 | rifampicin | |
rpoB | 761606 | c.1800C>G | synonymous_variant | 0.28 | rifampicin | |
rpoB | 761612 | c.1806G>T | synonymous_variant | 0.27 | rifampicin | Not assoc w R - Interim |
rpoB | 761615 | c.1809A>C | synonymous_variant | 0.27 | rifampicin | Not assoc w R - Interim |
rpoB | 761636 | c.1830G>T | synonymous_variant | 0.2 | rifampicin | Not assoc w R - Interim |
rpoB | 761645 | c.1839C>G | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoB | 761648 | c.1842T>C | synonymous_variant | 0.18 | rifampicin | |
rpoB | 761666 | c.1860G>C | synonymous_variant | 0.13 | rifampicin | |
rpoB | 761669 | c.1863C>T | synonymous_variant | 0.13 | rifampicin | |
rpoB | 761675 | c.1869G>T | synonymous_variant | 0.16 | rifampicin | |
rpoB | 761948 | c.2142G>C | synonymous_variant | 0.25 | rifampicin | Not assoc w R - Interim |
rpoB | 761954 | c.2148C>G | synonymous_variant | 0.27 | rifampicin | Not assoc w R - Interim |
rpoB | 762008 | c.2202C>T | synonymous_variant | 0.35 | rifampicin | Not assoc w R - Interim |
rpoB | 762014 | c.2208C>T | synonymous_variant | 0.38 | rifampicin | |
rpoB | 762047 | c.2241G>A | synonymous_variant | 0.33 | rifampicin | Not assoc w R - Interim |
rpoB | 762053 | c.2247T>C | synonymous_variant | 0.33 | rifampicin | Not assoc w R - Interim |
rpoB | 762062 | c.2256T>C | synonymous_variant | 0.28 | rifampicin | Not assoc w R - Interim |
rpoB | 762065 | c.2259T>C | synonymous_variant | 0.27 | rifampicin | Not assoc w R - Interim |
rpoB | 762083 | c.2277T>C | synonymous_variant | 0.21 | rifampicin | Not assoc w R - Interim |
rpoB | 762086 | c.2280G>C | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoB | 762101 | c.2295C>G | synonymous_variant | 0.26 | rifampicin | Not assoc w R - Interim |
rpoB | 762114 | p.Ile770Val | missense_variant | 0.23 | rifampicin | Uncertain significance |
rpoB | 762131 | c.2325C>G | synonymous_variant | 0.17 | rifampicin | |
rpoB | 762137 | c.2331C>T | synonymous_variant | 0.2 | rifampicin | Not assoc w R - Interim |
rpoB | 762140 | c.2334G>C | synonymous_variant | 0.2 | rifampicin | |
rpoB | 762143 | c.2337T>C | synonymous_variant | 0.19 | rifampicin | |
rpoB | 762149 | c.2343G>C | synonymous_variant | 0.22 | rifampicin | Not assoc w R - Interim |
rpoB | 762158 | c.2352G>C | synonymous_variant | 0.22 | rifampicin | Not assoc w R - Interim |
rpoB | 762167 | c.2361T>C | synonymous_variant | 0.26 | rifampicin | Not assoc w R - Interim |
rpoB | 762176 | c.2370T>C | synonymous_variant | 0.24 | rifampicin | Not assoc w R - Interim |
rpoB | 762185 | c.2379G>C | synonymous_variant | 0.26 | rifampicin | Not assoc w R - Interim |
rpoB | 762233 | c.2427G>C | synonymous_variant | 0.3 | rifampicin | Not assoc w R - Interim |
rpoB | 762245 | c.2439G>C | synonymous_variant | 0.33 | rifampicin | Not assoc w R - Interim |
rpoB | 762284 | c.2478G>T | synonymous_variant | 0.28 | rifampicin | |
rpoB | 762293 | c.2487T>C | synonymous_variant | 0.27 | rifampicin | Not assoc w R - Interim |
rpoB | 762308 | c.2502G>C | synonymous_variant | 0.18 | rifampicin | |
rpoB | 762317 | c.2511A>G | synonymous_variant | 0.14 | rifampicin | Not assoc w R - Interim |
rpoB | 762329 | c.2523G>C | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoB | 762369 | c.2563T>C | synonymous_variant | 0.14 | rifampicin | |
rpoC | 762374 | c.-996G>C | upstream_gene_variant | 0.16 | rifampicin | |
rpoC | 762395 | c.-975G>C | upstream_gene_variant | 0.13 | rifampicin | |
rpoC | 762398 | c.-972T>C | upstream_gene_variant | 0.13 | rifampicin | |
rpoB | 762404 | c.2598T>C | synonymous_variant | 0.13 | rifampicin | Not assoc w R - Interim |
rpoC | 762410 | c.-960T>C | upstream_gene_variant | 0.15 | rifampicin | |
rpoB | 762416 | c.2610A>G | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoB | 762920 | c.3114C>T | synonymous_variant | 0.22 | rifampicin | Not assoc w R - Interim |
rpoB | 762929 | c.3123G>C | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoB | 762962 | c.3156C>T | synonymous_variant | 0.2 | rifampicin | Not assoc w R - Interim |
rpoB | 763007 | c.3201C>T | synonymous_variant | 0.12 | rifampicin | Not assoc w R - Interim |
rpoB | 763028 | c.3222T>C | synonymous_variant | 0.24 | rifampicin | Not assoc w R - Interim |
rpoB | 763031 | c.3225T>G | synonymous_variant | 0.23 | rifampicin | Not assoc w R - Interim |
rpoB | 763053 | c.3247T>C | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoB | 763070 | c.3264T>C | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoB | 763085 | c.3279C>G | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoC | 763103 | c.-267G>C | upstream_gene_variant | 0.27 | rifampicin | |
rpoB | 763115 | c.3309T>C | synonymous_variant | 0.21 | rifampicin | Not assoc w R - Interim |
rpoB | 763127 | c.3321G>C | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoB | 763130 | c.3324G>A | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoC | 763133 | c.-237G>C | upstream_gene_variant | 0.19 | rifampicin | |
rpoB | 763136 | c.3330C>T | synonymous_variant | 0.21 | rifampicin | Not assoc w R - Interim |
rpoC | 763142 | c.-228C>G | upstream_gene_variant | 0.21 | rifampicin | |
rpoC | 763160 | c.-210G>T | upstream_gene_variant | 0.21 | rifampicin | |
rpoB | 763166 | c.3360A>G | synonymous_variant | 0.22 | rifampicin | Not assoc w R - Interim |
rpoC | 763169 | c.-201A>G | upstream_gene_variant | 0.22 | rifampicin | |
rpoC | 763190 | c.-180C>T | upstream_gene_variant | 0.17 | rifampicin | |
rpoC | 763456 | c.87A>G | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoC | 763468 | c.99G>C | synonymous_variant | 0.24 | rifampicin | Not assoc w R - Interim |
rpoC | 763486 | c.117T>C | synonymous_variant | 0.3 | rifampicin | Not assoc w R - Interim |
rpoC | 763492 | c.123G>T | synonymous_variant | 0.34 | rifampicin | |
rpoC | 763528 | c.159G>A | synonymous_variant | 0.4 | rifampicin | Not assoc w R - Interim |
rpoC | 763546 | c.177A>G | synonymous_variant | 0.4 | rifampicin | Not assoc w R - Interim |
rpoC | 763558 | c.189C>T | synonymous_variant | 0.44 | rifampicin | Not assoc w R - Interim |
rpoC | 763570 | c.201G>C | synonymous_variant | 0.32 | rifampicin | Not assoc w R - Interim |
rpoC | 763573 | c.204G>C | synonymous_variant | 0.35 | rifampicin | Not assoc w R - Interim |
rpoC | 763594 | c.225C>T | synonymous_variant | 0.42 | rifampicin | Not assoc w R - Interim |
rpoC | 763603 | c.234C>T | synonymous_variant | 0.33 | rifampicin | Not assoc w R - Interim |
rpoC | 763615 | c.246G>C | synonymous_variant | 0.38 | rifampicin | Not assoc w R - Interim |
rpoC | 763618 | c.249C>T | synonymous_variant | 0.37 | rifampicin | |
rpoC | 763633 | c.264T>C | synonymous_variant | 0.37 | rifampicin | Not assoc w R - Interim |
rpoC | 763660 | c.291T>G | synonymous_variant | 0.4 | rifampicin | Not assoc w R - Interim |
rpoC | 763666 | c.297G>A | synonymous_variant | 0.45 | rifampicin | |
rpoC | 763675 | c.306C>G | synonymous_variant | 0.41 | rifampicin | Not assoc w R - Interim |
rpoC | 763702 | c.333C>G | synonymous_variant | 0.41 | rifampicin | Not assoc w R - Interim |
rpoC | 763709 | c.340C>T | synonymous_variant | 0.42 | rifampicin | |
rpoC | 763714 | c.345G>C | synonymous_variant | 0.38 | rifampicin | Not assoc w R - Interim |
rpoC | 763717 | c.348T>C | synonymous_variant | 0.41 | rifampicin | Not assoc w R - Interim |
rpoC | 763723 | c.354G>C | synonymous_variant | 0.39 | rifampicin | |
rpoC | 763732 | c.363C>T | synonymous_variant | 0.46 | rifampicin | |
rpoC | 763741 | c.372C>T | synonymous_variant | 0.42 | rifampicin | |
rpoC | 763747 | c.378G>A | synonymous_variant | 0.41 | rifampicin | |
rpoC | 763765 | c.396T>G | synonymous_variant | 0.39 | rifampicin | Not assoc w R - Interim |
rpoC | 763792 | p.Glu141Asp | missense_variant | 0.29 | rifampicin | |
rpoC | 763807 | c.438T>C | synonymous_variant | 0.26 | rifampicin | Not assoc w R - Interim |
rpoC | 763813 | c.444C>G | synonymous_variant | 0.25 | rifampicin | |
rpoC | 763831 | c.462A>G | synonymous_variant | 0.26 | rifampicin | |
rpoC | 763837 | c.468G>C | synonymous_variant | 0.24 | rifampicin | |
rpoC | 763840 | c.471G>C | synonymous_variant | 0.24 | rifampicin | |
rpoC | 763858 | c.489A>G | synonymous_variant | 0.18 | rifampicin | |
rpoC | 763861 | c.492C>T | synonymous_variant | 0.19 | rifampicin | |
rpoC | 763872 | p.Gly168Ala | missense_variant | 0.2 | rifampicin | |
rpoC | 763876 | p.Glu169Asp | missense_variant | 0.18 | rifampicin | |
rpoC | 763879 | c.510A>G | synonymous_variant | 0.18 | rifampicin | |
rpoC | 763882 | c.513G>A | synonymous_variant | 0.18 | rifampicin | |
rpoC | 763891 | c.522G>C | synonymous_variant | 0.23 | rifampicin | |
rpoC | 763894 | c.525A>G | synonymous_variant | 0.21 | rifampicin | |
rpoC | 763900 | c.531G>C | synonymous_variant | 0.22 | rifampicin | Not assoc w R - Interim |
rpoC | 763987 | c.618C>T | synonymous_variant | 0.16 | rifampicin | |
rpoC | 764182 | p.Asp271Glu | missense_variant | 0.25 | rifampicin | Uncertain significance |
rpoC | 764188 | c.819A>G | synonymous_variant | 0.24 | rifampicin | Not assoc w R - Interim |
rpoC | 764195 | c.826_828delTCGinsAGC | synonymous_variant | 0.22 | rifampicin | |
rpoC | 764203 | c.834G>C | synonymous_variant | 0.22 | rifampicin | |
rpoC | 764206 | p.Asp279Glu | missense_variant | 0.22 | rifampicin | |
rpoC | 764207 | p.Val280Thr | missense_variant | 0.21 | rifampicin | Uncertain significance |
rpoC | 764215 | c.846A>C | synonymous_variant | 0.2 | rifampicin | |
rpoC | 764217 | p.Asn283Ser | missense_variant | 0.19 | rifampicin | |
rpoC | 764239 | c.870T>G | synonymous_variant | 0.3 | rifampicin | Not assoc w R - Interim |
rpoC | 764254 | c.885G>C | synonymous_variant | 0.25 | rifampicin | |
rpoC | 764257 | c.888G>C | synonymous_variant | 0.21 | rifampicin | |
rpoC | 764293 | c.924G>C | synonymous_variant | 0.26 | rifampicin | Not assoc w R - Interim |
rpoC | 764297 | p.Met310Leu | missense_variant | 0.26 | rifampicin | |
rpoC | 764344 | c.975C>T | synonymous_variant | 0.26 | rifampicin | |
rpoC | 764353 | c.984G>T | synonymous_variant | 0.21 | rifampicin | Not assoc w R - Interim |
rpoC | 764365 | c.996C>T | synonymous_variant | 0.22 | rifampicin | Not assoc w R - Interim |
rpoC | 764371 | c.1002G>C | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoC | 764380 | c.1011G>C | synonymous_variant | 0.21 | rifampicin | Not assoc w R - Interim |
rpoC | 764387 | c.1018T>C | synonymous_variant | 0.23 | rifampicin | Not assoc w R - Interim |
rpoC | 764405 | c.1036_1038delAGGinsCGC | synonymous_variant | 0.24 | rifampicin | Not assoc w R - Interim |
rpoC | 764431 | c.1062G>C | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoC | 764434 | c.1065A>G | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoC | 764435 | c.1066_1068delAGGinsCGA | synonymous_variant | 0.17 | rifampicin | |
rpoC | 764446 | c.1077T>C | synonymous_variant | 0.21 | rifampicin | |
rpoC | 764449 | c.1080G>C | synonymous_variant | 0.24 | rifampicin | |
rpoC | 764458 | c.1089G>C | synonymous_variant | 0.26 | rifampicin | Not assoc w R - Interim |
rpoC | 764461 | c.1092A>G | synonymous_variant | 0.27 | rifampicin | Not assoc w R - Interim |
rpoC | 764485 | c.1116G>C | synonymous_variant | 0.27 | rifampicin | |
rpoC | 764491 | c.1122G>T | synonymous_variant | 0.28 | rifampicin | |
rpoC | 764497 | c.1128A>G | synonymous_variant | 0.26 | rifampicin | Not assoc w R - Interim |
rpoC | 764500 | c.1131C>G | synonymous_variant | 0.28 | rifampicin | |
rpoC | 764503 | c.1134G>C | synonymous_variant | 0.28 | rifampicin | |
rpoC | 764521 | c.1152T>C | synonymous_variant | 0.31 | rifampicin | Not assoc w R - Interim |
rpoC | 764527 | c.1158C>T | synonymous_variant | 0.36 | rifampicin | Not assoc w R - Interim |
rpoC | 764536 | c.1167G>T | synonymous_variant | 0.33 | rifampicin | Not assoc w R - Interim |
rpoC | 764539 | c.1170C>G | synonymous_variant | 0.34 | rifampicin | Not assoc w R - Interim |
rpoC | 764575 | c.1206T>G | synonymous_variant | 0.32 | rifampicin | Not assoc w R - Interim |
rpoC | 764605 | c.1236G>C | synonymous_variant | 0.31 | rifampicin | Not assoc w R - Interim |
rpoC | 764611 | c.1242G>T | synonymous_variant | 0.33 | rifampicin | Not assoc w R - Interim |
rpoC | 764623 | c.1254C>G | synonymous_variant | 0.36 | rifampicin | Not assoc w R - Interim |
rpoC | 764626 | c.1257C>T | synonymous_variant | 0.33 | rifampicin | Not assoc w R - Interim |
rpoC | 764632 | c.1263T>C | synonymous_variant | 0.4 | rifampicin | Not assoc w R - Interim |
rpoC | 764650 | c.1281G>T | synonymous_variant | 0.4 | rifampicin | Not assoc w R - Interim |
rpoC | 764701 | c.1332C>G | synonymous_variant | 0.35 | rifampicin | Not assoc w R - Interim |
rpoC | 764713 | c.1344G>T | synonymous_variant | 0.36 | rifampicin | Not assoc w R - Interim |
rpoC | 764716 | c.1347G>C | synonymous_variant | 0.36 | rifampicin | Not assoc w R - Interim |
rpoC | 764746 | c.1377G>T | synonymous_variant | 0.33 | rifampicin | Not assoc w R - Interim |
rpoC | 764752 | c.1383G>C | synonymous_variant | 0.34 | rifampicin | Not assoc w R - Interim |
rpoC | 764758 | c.1389C>G | synonymous_variant | 0.33 | rifampicin | Not assoc w R - Interim |
rpoC | 764764 | c.1395T>C | synonymous_variant | 0.31 | rifampicin | Not assoc w R - Interim |
rpoC | 764803 | c.1434C>T | synonymous_variant | 0.25 | rifampicin | Not assoc w R - Interim |
rpoC | 764809 | c.1440C>T | synonymous_variant | 0.24 | rifampicin | Not assoc w R |
rpoC | 764815 | c.1446A>G | synonymous_variant | 0.22 | rifampicin | Not assoc w R - Interim |
rpoC | 764824 | c.1455T>C | synonymous_variant | 0.2 | rifampicin | Not assoc w R - Interim |
rpoC | 764827 | c.1458G>C | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoC | 764858 | c.1489T>C | synonymous_variant | 0.23 | rifampicin | Not assoc w R - Interim |
rpoC | 764869 | c.1500C>T | synonymous_variant | 0.23 | rifampicin | Not assoc w R - Interim |
rpoC | 764875 | c.1506C>T | synonymous_variant | 0.21 | rifampicin | |
rpoC | 764878 | c.1509C>G | synonymous_variant | 0.22 | rifampicin | |
rpoC | 764887 | c.1518G>C | synonymous_variant | 0.23 | rifampicin | Not assoc w R - Interim |
rpoC | 764888 | c.1519T>C | synonymous_variant | 0.22 | rifampicin | Not assoc w R - Interim |
rpoC | 764911 | c.1542A>G | synonymous_variant | 0.29 | rifampicin | |
rpoC | 764912 | p.Met515Gln | missense_variant | 0.28 | rifampicin | Uncertain significance |
rpoC | 764935 | c.1566T>C | synonymous_variant | 0.32 | rifampicin | |
rpoC | 764948 | c.1579T>C | synonymous_variant | 0.28 | rifampicin | Not assoc w R - Interim |
rpoC | 764968 | c.1599T>C | synonymous_variant | 0.23 | rifampicin | Not assoc w R - Interim |
rpoC | 765529 | c.2160C>T | synonymous_variant | 0.19 | rifampicin | |
rpoC | 765871 | c.2502T>C | synonymous_variant | 0.15 | rifampicin | |
rpoC | 765875 | p.Val836Ile | missense_variant | 0.16 | rifampicin | Uncertain significance |
rpoC | 765886 | c.2517C>G | synonymous_variant | 0.15 | rifampicin | |
rpoC | 765908 | c.2539C>T | synonymous_variant | 0.15 | rifampicin | |
rpoC | 765934 | c.2565C>T | synonymous_variant | 0.2 | rifampicin | |
rpoC | 765940 | c.2571A>T | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoC | 765994 | c.2625A>T | synonymous_variant | 0.14 | rifampicin | Not assoc w R - Interim |
rpoC | 766726 | c.3357T>C | synonymous_variant | 0.22 | rifampicin | |
rpoC | 766738 | c.3369G>T | synonymous_variant | 0.19 | rifampicin | |
rpoC | 766741 | c.3372G>C | synonymous_variant | 0.19 | rifampicin | |
rpoC | 766747 | c.3378C>T | synonymous_variant | 0.24 | rifampicin | |
rpoC | 766765 | c.3396A>C | synonymous_variant | 0.22 | rifampicin | Not assoc w R - Interim |
rpoC | 766771 | c.3402G>C | synonymous_variant | 0.22 | rifampicin | |
rpoC | 766774 | c.3405T>C | synonymous_variant | 0.22 | rifampicin | |
rpoC | 766775 | p.Arg1136Lys | missense_variant | 0.22 | rifampicin | |
rpoC | 766798 | c.3429C>G | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoC | 767020 | c.3651C>G | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoC | 767023 | c.3654C>T | synonymous_variant | 0.23 | rifampicin | Not assoc w R - Interim |
rpoC | 767098 | c.3729T>C | synonymous_variant | 0.26 | rifampicin | Not assoc w R - Interim |
rpoC | 767104 | c.3735C>G | synonymous_variant | 0.24 | rifampicin | Not assoc w R - Interim |
rpoC | 767105 | p.Asn1246Gln | missense_variant | 0.25 | rifampicin | Uncertain significance |
rpoC | 767119 | c.3750A>G | synonymous_variant | 0.23 | rifampicin | Not assoc w R - Interim |
rpoC | 767134 | c.3765C>T | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoC | 767138 | c.3769C>T | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoC | 767191 | c.3822C>G | synonymous_variant | 0.15 | rifampicin | Not assoc w R - Interim |
rpoC | 767197 | c.3828G>A | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoC | 767200 | c.3831G>A | synonymous_variant | 0.15 | rifampicin | |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 | bedaquiline | Not assoc w R - Interim |
clofazimine | Not assoc w R | |||||
mmpL5 | 775886 | c.2595A>T | synonymous_variant | 0.14 | bedaquiline | |
clofazimine | ||||||
mmpL5 | 775904 | c.2577G>A | synonymous_variant | 0.16 | bedaquiline | |
clofazimine | ||||||
mmpL5 | 775915 | p.Ala856Ser | missense_variant | 0.15 | bedaquiline | |
clofazimine | ||||||
mmpL5 | 775916 | c.2565T>C | synonymous_variant | 0.16 | bedaquiline | |
clofazimine | ||||||
mmpL5 | 775951 | c.2530C>T | synonymous_variant | 0.23 | bedaquiline | |
clofazimine | ||||||
mmpL5 | 775966 | p.Ala839Ser | missense_variant | 0.25 | bedaquiline | |
clofazimine | ||||||
mmpL5 | 778298 | c.183G>A | synonymous_variant | 1.0 | bedaquiline | Not assoc w R - Interim |
clofazimine | Not assoc w R - Interim | |||||
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 | streptomycin | Not assoc w R |
rpsL | 781595 | c.36T>C | synonymous_variant | 0.14 | streptomycin | |
rpsL | 781598 | c.39G>C | synonymous_variant | 0.14 | streptomycin | |
rpsL | 781605 | p.Ile16Val | missense_variant | 0.14 | streptomycin | Uncertain significance |
rpsL | 781608 | p.Ser17Ala | missense_variant | 0.14 | streptomycin | |
rpsL | 781628 | c.69T>C | synonymous_variant | 0.19 | streptomycin | Not assoc w R - Interim |
rpsL | 781631 | c.72G>C | synonymous_variant | 0.2 | streptomycin | |
rpsL | 781649 | c.90T>C | synonymous_variant | 0.18 | streptomycin | |
rpsL | 781655 | c.96T>C | synonymous_variant | 0.18 | streptomycin | |
rpsL | 781658 | c.99A>G | synonymous_variant | 0.17 | streptomycin | |
rpsL | 781838 | c.279G>C | synonymous_variant | 0.2 | streptomycin | |
rpsL | 781841 | c.282C>T | synonymous_variant | 0.18 | streptomycin | |
rpsL | 781859 | c.300T>G | synonymous_variant | 0.24 | streptomycin | |
rpsL | 781865 | c.306G>C | synonymous_variant | 0.23 | streptomycin | |
rpsL | 781868 | c.309T>C | synonymous_variant | 0.23 | streptomycin | |
rpsL | 781871 | c.312G>C | synonymous_variant | 0.24 | streptomycin | |
rpsL | 781892 | c.333A>G | synonymous_variant | 0.27 | streptomycin | |
rpsL | 781898 | c.339A>C | synonymous_variant | 0.28 | streptomycin | |
rpsL | 781901 | c.342C>T | synonymous_variant | 0.29 | streptomycin | |
rpsL | 781907 | c.348T>C | synonymous_variant | 0.29 | streptomycin | |
rpsL | 781916 | c.357T>C | synonymous_variant | 0.28 | streptomycin | |
rpsL | 781929 | p.Gly124Ser | missense_variant | 0.26 | streptomycin | Uncertain significance |
rplC | 800654 | c.-155T>C | upstream_gene_variant | 0.17 | linezolid | |
rplC | 800678 | c.-131C>T | upstream_gene_variant | 0.27 | linezolid | |
rplC | 800684 | c.-125G>A | upstream_gene_variant | 0.27 | linezolid | |
rplC | 800693 | c.-116A>C | upstream_gene_variant | 0.27 | linezolid | |
rplC | 800702 | c.-107G>A | upstream_gene_variant | 0.29 | linezolid | |
rplC | 800703 | c.-106T>C | upstream_gene_variant | 0.27 | linezolid | |
rplC | 800715 | c.-94A>C | upstream_gene_variant | 0.25 | linezolid | |
rplC | 800720 | c.-89T>C | upstream_gene_variant | 0.26 | linezolid | |
rplC | 800723 | c.-86C>G | upstream_gene_variant | 0.27 | linezolid | |
rplC | 800735 | c.-74C>G | upstream_gene_variant | 0.25 | linezolid | |
rplC | 800964 | c.156G>C | synonymous_variant | 0.16 | linezolid | |
rplC | 800985 | c.177A>G | synonymous_variant | 0.16 | linezolid | |
rplC | 801237 | c.429G>A | synonymous_variant | 0.15 | linezolid | |
fbiC | 1303512 | c.582T>G | synonymous_variant | 0.17 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1303531 | p.Met201Leu | missense_variant | 0.17 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1303536 | c.606G>A | synonymous_variant | 0.19 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1303539 | c.609G>C | synonymous_variant | 0.19 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1303545 | c.615A>G | synonymous_variant | 0.19 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1303548 | c.618G>C | synonymous_variant | 0.19 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1303551 | c.621G>C | synonymous_variant | 0.2 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1303554 | c.624G>A | synonymous_variant | 0.19 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1303581 | c.651G>C | synonymous_variant | 0.17 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1303584 | c.654C>G | synonymous_variant | 0.15 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1303587 | c.657G>C | synonymous_variant | 0.15 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304640 | c.1710A>C | synonymous_variant | 0.14 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
fbiC | 1304694 | c.1764A>G | synonymous_variant | 0.16 | pretomanid | |
delamanid | ||||||
clofazimine | ||||||
sigE | 1364847 | c.435G>C | synonymous_variant | 0.14 | pyrazinamide | |
sigE | 1364865 | c.453G>C | synonymous_variant | 0.14 | pyrazinamide | |
sigE | 1364867 | p.Ala152Gly | missense_variant | 0.15 | pyrazinamide | |
sigE | 1364871 | c.459C>T | synonymous_variant | 0.16 | pyrazinamide | |
sigE | 1364877 | c.465G>T | synonymous_variant | 0.16 | pyrazinamide | |
sigE | 1364883 | c.471G>A | synonymous_variant | 0.16 | pyrazinamide | |
sigE | 1364887 | c.475_477delTTAinsCTG | synonymous_variant | 0.16 | pyrazinamide | |
sigE | 1364898 | c.486C>T | synonymous_variant | 0.18 | pyrazinamide | |
sigE | 1364919 | c.507T>C | synonymous_variant | 0.19 | pyrazinamide | |
sigE | 1364922 | p.Glu170Asp | missense_variant | 0.18 | pyrazinamide | |
sigE | 1364925 | c.513C>G | synonymous_variant | 0.18 | pyrazinamide | |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 | kanamycin | |
capreomycin | ||||||
streptomycin | ||||||
amikacin | ||||||
rrs | 1471934 | n.89A>G | non_coding_transcript_exon_variant | 0.27 | kanamycin | |
capreomycin | Uncertain significance | |||||
streptomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1473276 | n.1431A>G | non_coding_transcript_exon_variant | 0.62 | kanamycin | Uncertain significance |
capreomycin | Uncertain significance | |||||
streptomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
inhA | 1674718 | c.517A>C | synonymous_variant | 0.26 | isoniazid | |
ethionamide | ||||||
inhA | 1674729 | c.528G>T | synonymous_variant | 0.26 | isoniazid | |
ethionamide | ||||||
inhA | 1674742 | p.Lys181Ala | missense_variant | 0.24 | isoniazid | |
ethionamide | ||||||
inhA | 1674745 | p.Tyr182Ala | missense_variant | 0.24 | isoniazid | |
ethionamide | ||||||
inhA | 1674753 | c.552G>C | synonymous_variant | 0.25 | isoniazid | |
ethionamide | ||||||
inhA | 1674774 | c.573A>C | synonymous_variant | 0.26 | isoniazid | |
ethionamide | ||||||
inhA | 1674777 | c.576C>G | synonymous_variant | 0.24 | isoniazid | |
ethionamide | ||||||
inhA | 1674780 | c.579T>G | synonymous_variant | 0.25 | isoniazid | |
ethionamide | ||||||
rpsA | 1833628 | c.87G>C | synonymous_variant | 0.15 | pyrazinamide | |
rpsA | 1833634 | c.93G>A | synonymous_variant | 0.17 | pyrazinamide | |
rpsA | 1833679 | c.138G>T | synonymous_variant | 0.13 | pyrazinamide | |
rpsA | 1833709 | c.168C>T | synonymous_variant | 0.13 | pyrazinamide | |
rpsA | 1833724 | c.183C>T | synonymous_variant | 0.16 | pyrazinamide | |
rpsA | 1833760 | c.219C>T | synonymous_variant | 0.15 | pyrazinamide | Not assoc w R - Interim |
rpsA | 1833787 | c.246C>G | synonymous_variant | 0.18 | pyrazinamide | |
rpsA | 1833790 | c.249T>C | synonymous_variant | 0.17 | pyrazinamide | |
rpsA | 1833793 | c.252C>T | synonymous_variant | 0.19 | pyrazinamide | |
rpsA | 1833802 | c.261A>G | synonymous_variant | 0.23 | pyrazinamide | |
rpsA | 1833808 | c.267G>C | synonymous_variant | 0.2 | pyrazinamide | |
rpsA | 1833811 | c.270G>T | synonymous_variant | 0.22 | pyrazinamide | |
rpsA | 1833829 | c.288A>G | synonymous_variant | 0.32 | pyrazinamide | |
rpsA | 1833832 | c.291G>A | synonymous_variant | 0.31 | pyrazinamide | |
rpsA | 1833838 | c.297G>C | synonymous_variant | 0.35 | pyrazinamide | |
rpsA | 1833841 | c.300C>G | synonymous_variant | 0.33 | pyrazinamide | |
rpsA | 1833847 | c.306C>G | synonymous_variant | 0.34 | pyrazinamide | |
rpsA | 1833856 | c.315A>G | synonymous_variant | 0.31 | pyrazinamide | |
rpsA | 1833862 | c.321G>T | synonymous_variant | 0.27 | pyrazinamide | |
rpsA | 1833894 | p.Ala118Glu | missense_variant | 0.24 | pyrazinamide | |
rpsA | 1833904 | c.363G>A | synonymous_variant | 0.23 | pyrazinamide | |
rpsA | 1833928 | c.387G>C | synonymous_variant | 0.29 | pyrazinamide | |
rpsA | 1833949 | c.408T>C | synonymous_variant | 0.31 | pyrazinamide | |
rpsA | 1833970 | c.429G>T | synonymous_variant | 0.29 | pyrazinamide | |
rpsA | 1833976 | c.435C>T | synonymous_variant | 0.29 | pyrazinamide | |
rpsA | 1833979 | c.438T>C | synonymous_variant | 0.31 | pyrazinamide | |
rpsA | 1833991 | c.450C>A | synonymous_variant | 0.3 | pyrazinamide | |
rpsA | 1834000 | c.459G>C | synonymous_variant | 0.24 | pyrazinamide | |
rpsA | 1834009 | c.468C>T | synonymous_variant | 0.22 | pyrazinamide | |
rpsA | 1834012 | c.471G>T | synonymous_variant | 0.22 | pyrazinamide | |
rpsA | 1834015 | c.474G>C | synonymous_variant | 0.22 | pyrazinamide | |
rpsA | 1834021 | c.480C>T | synonymous_variant | 0.21 | pyrazinamide | |
rpsA | 1834030 | c.489C>G | synonymous_variant | 0.21 | pyrazinamide | |
rpsA | 1834097 | c.556_557delTCinsAG | synonymous_variant | 0.2 | pyrazinamide | |
rpsA | 1834102 | c.561T>C | synonymous_variant | 0.22 | pyrazinamide | |
rpsA | 1834279 | c.738C>T | synonymous_variant | 0.16 | pyrazinamide | Not assoc w R - Interim |
rpsA | 1834297 | c.756C>T | synonymous_variant | 0.21 | pyrazinamide | |
rpsA | 1834303 | c.762T>G | synonymous_variant | 0.23 | pyrazinamide | |
rpsA | 1834306 | c.765T>C | synonymous_variant | 0.25 | pyrazinamide | |
rpsA | 1834345 | c.804C>T | synonymous_variant | 0.28 | pyrazinamide | |
rpsA | 1834348 | c.807T>C | synonymous_variant | 0.28 | pyrazinamide | Not assoc w R - Interim |
rpsA | 1834361 | c.820T>C | synonymous_variant | 0.25 | pyrazinamide | |
rpsA | 1834366 | c.825A>G | synonymous_variant | 0.26 | pyrazinamide | Not assoc w R - Interim |
rpsA | 1834411 | c.870T>C | synonymous_variant | 0.18 | pyrazinamide | |
rpsA | 1834423 | c.882G>T | synonymous_variant | 0.2 | pyrazinamide | |
rpsA | 1834451 | c.910T>C | synonymous_variant | 0.21 | pyrazinamide | |
rpsA | 1834456 | c.915T>G | synonymous_variant | 0.23 | pyrazinamide | |
rpsA | 1834468 | c.927A>G | synonymous_variant | 0.21 | pyrazinamide | |
rpsA | 1834489 | c.948T>C | synonymous_variant | 0.19 | pyrazinamide | |
rpsA | 1834498 | c.957C>T | synonymous_variant | 0.19 | pyrazinamide | |
rpsA | 1834513 | c.972C>G | synonymous_variant | 0.21 | pyrazinamide | |
rpsA | 1834520 | p.Ala327Ser | missense_variant | 0.2 | pyrazinamide | |
rpsA | 1834528 | c.987T>C | synonymous_variant | 0.2 | pyrazinamide | |
rpsA | 1834540 | c.999G>C | synonymous_variant | 0.18 | pyrazinamide | |
rpsA | 1834606 | c.1065C>T | synonymous_variant | 0.17 | pyrazinamide | |
rpsA | 1834609 | c.1068T>C | synonymous_variant | 0.12 | pyrazinamide | |
rpsA | 1834666 | c.1125G>C | synonymous_variant | 0.16 | pyrazinamide | |
rpsA | 1834667 | p.Ala376Ser | missense_variant | 0.16 | pyrazinamide | |
rpsA | 1834690 | c.1149T>C | synonymous_variant | 0.18 | pyrazinamide | |
rpsA | 1834732 | c.1191T>C | synonymous_variant | 0.18 | pyrazinamide | |
rpsA | 1834738 | c.1197A>G | synonymous_variant | 0.19 | pyrazinamide | |
rpsA | 1834753 | c.1212T>C | synonymous_variant | 0.21 | pyrazinamide | |
rpsA | 1834756 | c.1215G>A | synonymous_variant | 0.21 | pyrazinamide | |
rpsA | 1834759 | c.1218A>C | synonymous_variant | 0.24 | pyrazinamide | |
rpsA | 1834765 | p.Glu408Asp | missense_variant | 0.23 | pyrazinamide | |
rpsA | 1834774 | c.1233C>G | synonymous_variant | 0.17 | pyrazinamide | |
rpsA | 1834776 | p.Ala412Glu | missense_variant | 0.17 | pyrazinamide | |
rpsA | 1834780 | c.1239A>G | synonymous_variant | 0.16 | pyrazinamide | |
rpsA | 1834786 | c.1245A>G | synonymous_variant | 0.16 | pyrazinamide | |
rpsA | 1834789 | c.1248T>C | synonymous_variant | 0.17 | pyrazinamide | |
rpsA | 1834792 | c.1251G>C | synonymous_variant | 0.17 | pyrazinamide | |
tsnR | 1853361 | c.-245T>C | upstream_gene_variant | 0.18 | linezolid | |
tsnR | 1853370 | c.-236_-234delGCAinsTCG | upstream_gene_variant | 0.18 | linezolid | |
tsnR | 1853375 | c.-231G>T | upstream_gene_variant | 0.18 | linezolid | |
tsnR | 1853384 | c.-222G>C | upstream_gene_variant | 0.17 | linezolid | |
tsnR | 1853387 | c.-219T>G | upstream_gene_variant | 0.19 | linezolid | |
tsnR | 1853390 | c.-216G>C | upstream_gene_variant | 0.17 | linezolid | |
tsnR | 1853394 | c.-212_-211delCTinsGC | upstream_gene_variant | 0.17 | linezolid | |
tsnR | 1854300 | p.Leu232Pro | missense_variant | 1.0 | linezolid | Not assoc w R |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 | capreomycin | Not assoc w R |
bacA | 2063187 | c.1542C>T | synonymous_variant | 1.0 | kanamycin | Not assoc w R |
capreomycin | Not assoc w R - Interim | |||||
streptomycin | Not assoc w R - Interim | |||||
amikacin | Not assoc w R - Interim | |||||
katG | 2155389 | c.723C>G | synonymous_variant | 1.0 | isoniazid | Not assoc w R |
Rv1979c | 2221746 | c.1416_1418dupCCG | disruptive_inframe_insertion | 1.0 | bedaquiline | Uncertain significance |
clofazimine | Uncertain significance | |||||
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 | bedaquiline | Not assoc w R - Interim |
clofazimine | Not assoc w R | |||||
kasA | 2517941 | c.-174C>G | upstream_gene_variant | 0.3 | isoniazid | |
kasA | 2517959 | c.-156C>T | upstream_gene_variant | 0.29 | isoniazid | |
kasA | 2517962 | c.-153C>G | upstream_gene_variant | 0.26 | isoniazid | |
kasA | 2517968 | c.-147T>C | upstream_gene_variant | 0.28 | isoniazid | |
kasA | 2517974 | c.-141T>C | upstream_gene_variant | 0.27 | isoniazid | |
kasA | 2517980 | c.-135C>T | upstream_gene_variant | 0.18 | isoniazid | |
kasA | 2517989 | c.-126T>G | upstream_gene_variant | 0.16 | isoniazid | |
kasA | 2517993 | c.-122G>T | upstream_gene_variant | 0.22 | isoniazid | |
kasA | 2518756 | c.642G>C | synonymous_variant | 0.18 | isoniazid | |
kasA | 2518780 | p.Glu222Asp | missense_variant | 0.15 | isoniazid | |
kasA | 2518783 | c.669T>C | synonymous_variant | 0.15 | isoniazid | |
kasA | 2518785 | p.Glu224Ala | missense_variant | 0.14 | isoniazid | |
kasA | 2518787 | p.Arg225Gly | missense_variant | 0.13 | isoniazid | |
kasA | 2518792 | c.678C>G | synonymous_variant | 0.13 | isoniazid | |
kasA | 2518795 | c.681C>T | synonymous_variant | 0.13 | isoniazid | |
Rv2477c | 2783395 | c.648T>G | synonymous_variant | 0.13 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783419 | c.624G>C | synonymous_variant | 0.15 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783422 | c.621T>C | synonymous_variant | 0.15 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783426 | p.Pro206Asn | missense_variant | 0.14 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783440 | c.603T>C | synonymous_variant | 0.15 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2477c | 2783446 | c.597A>G | synonymous_variant | 0.14 | kanamycin | |
levofloxacin | ||||||
moxifloxacin | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
amikacin | ||||||
Rv2680 | 2996208 | p.Ala35Asp | missense_variant | 0.98 | capreomycin | Uncertain significance |
thyX | 3067474 | p.Pro158Ala | missense_variant | 0.97 | para-aminosalicylic_acid | |
Rv3083 | 3448567 | p.His22Asp | missense_variant | 1.0 | ethionamide | Uncertain significance |
Rv3236c | 3612571 | c.546C>T | synonymous_variant | 1.0 | pyrazinamide | Not assoc w R |
Rv3236c | 3612910 | p.Leu69Phe | missense_variant | 1.0 | pyrazinamide | Uncertain significance |
lpqB | 3624675 | p.Asn79Ser | missense_variant | 0.16 | rifampicin | |
bedaquiline | ||||||
lpqB | 3624680 | c.231T>G | synonymous_variant | 0.15 | rifampicin | |
bedaquiline | ||||||
lpqB | 3624701 | c.210T>G | synonymous_variant | 0.15 | rifampicin | |
bedaquiline | ||||||
lpqB | 3624704 | c.207G>C | synonymous_variant | 0.15 | rifampicin | |
bedaquiline | ||||||
lpqB | 3624725 | c.186G>T | synonymous_variant | 0.15 | rifampicin | |
bedaquiline | ||||||
lpqB | 3625690 | c.-780T>C | upstream_gene_variant | 0.14 | rifampicin | |
bedaquiline | ||||||
mtrB | 3625711 | c.903C>T | synonymous_variant | 0.15 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrB | 3625720 | c.894G>C | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrB | 3625729 | c.885A>G | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
mtrB | 3625732 | c.882C>T | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
lpqB | 3625735 | c.-825C>T | upstream_gene_variant | 0.19 | rifampicin | |
bedaquiline | ||||||
mtrB | 3625753 | p.Ala287Gln | missense_variant | 0.17 | rifampicin | |
bedaquiline | ||||||
lpqB | 3625762 | c.-852A>C | upstream_gene_variant | 0.16 | rifampicin | |
bedaquiline | ||||||
mtrB | 3625765 | c.849C>G | synonymous_variant | 0.15 | rifampicin | Not assoc w R - Interim |
bedaquiline | ||||||
lpqB | 3625804 | c.-896_-894delAGGinsCGC | upstream_gene_variant | 0.17 | rifampicin | |
bedaquiline | ||||||
lpqB | 3625828 | c.-918G>C | upstream_gene_variant | 0.14 | rifampicin | |
bedaquiline | ||||||
rpoA | 3877647 | c.861C>T | synonymous_variant | 0.18 | rifampicin | |
rpoA | 3877656 | c.852T>G | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoA | 3877668 | c.840A>G | synonymous_variant | 0.17 | rifampicin | |
rpoA | 3877671 | c.837C>G | synonymous_variant | 0.23 | rifampicin | |
rpoA | 3877677 | c.831G>C | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoA | 3877680 | c.828G>C | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoA | 3877683 | c.825G>C | synonymous_variant | 0.17 | rifampicin | |
rpoA | 3877686 | c.822A>G | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoA | 3877695 | c.813C>G | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoA | 3877704 | c.804G>T | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoA | 3877818 | c.690A>G | synonymous_variant | 0.21 | rifampicin | Not assoc w R - Interim |
rpoA | 3877848 | c.660C>T | synonymous_variant | 0.28 | rifampicin | Not assoc w R - Interim |
rpoA | 3877856 | c.652T>C | synonymous_variant | 0.27 | rifampicin | Not assoc w R - Interim |
rpoA | 3877857 | c.651G>A | synonymous_variant | 0.27 | rifampicin | |
rpoA | 3877866 | c.642G>C | synonymous_variant | 0.31 | rifampicin | |
rpoA | 3877875 | c.633T>A | synonymous_variant | 0.28 | rifampicin | |
rpoA | 3877878 | c.630G>C | synonymous_variant | 0.26 | rifampicin | |
rpoA | 3877887 | c.621G>C | synonymous_variant | 0.24 | rifampicin | |
rpoA | 3877893 | c.615C>T | synonymous_variant | 0.27 | rifampicin | Not assoc w R - Interim |
rpoA | 3877905 | c.603A>G | synonymous_variant | 0.27 | rifampicin | Not assoc w R - Interim |
rpoA | 3877908 | c.600T>C | synonymous_variant | 0.25 | rifampicin | Not assoc w R - Interim |
rpoA | 3877926 | c.582G>C | synonymous_variant | 0.16 | rifampicin | |
rpoA | 3877962 | c.546G>T | synonymous_variant | 0.13 | rifampicin | Not assoc w R - Interim |
rpoA | 3878118 | c.390T>C | synonymous_variant | 0.15 | rifampicin | |
rpoA | 3878127 | c.381G>C | synonymous_variant | 0.14 | rifampicin | |
rpoA | 3878143 | p.Gly122Asp | missense_variant | 0.24 | rifampicin | Uncertain significance |
rpoA | 3878145 | c.363C>G | synonymous_variant | 0.25 | rifampicin | |
rpoA | 3878160 | c.348C>G | synonymous_variant | 0.28 | rifampicin | Not assoc w R - Interim |
rpoA | 3878163 | c.345C>T | synonymous_variant | 0.28 | rifampicin | Not assoc w R - Interim |
rpoA | 3878187 | c.321C>A | synonymous_variant | 0.27 | rifampicin | |
rpoA | 3878193 | c.315T>C | synonymous_variant | 0.28 | rifampicin | Not assoc w R - Interim |
rpoA | 3878197 | p.Glu104Ala | missense_variant | 0.28 | rifampicin | Uncertain significance |
rpoA | 3878205 | c.303T>C | synonymous_variant | 0.31 | rifampicin | Not assoc w R - Interim |
rpoA | 3878217 | c.291A>G | synonymous_variant | 0.34 | rifampicin | Not assoc w R - Interim |
rpoA | 3878238 | c.270C>T | synonymous_variant | 0.28 | rifampicin | |
rpoA | 3878244 | c.264G>A | synonymous_variant | 0.22 | rifampicin | |
rpoA | 3878247 | c.261G>A | synonymous_variant | 0.2 | rifampicin | |
rpoA | 3878256 | c.252G>C | synonymous_variant | 0.2 | rifampicin | |
rpoA | 3878264 | p.Ser82Gly | missense_variant | 0.2 | rifampicin | |
rpoA | 3878271 | c.237T>C | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
clpC1 | 4038563 | c.2142C>T | synonymous_variant | 0.22 | pyrazinamide | |
clpC1 | 4038584 | c.2121G>A | synonymous_variant | 0.25 | pyrazinamide | |
clpC1 | 4038587 | c.2118C>G | synonymous_variant | 0.25 | pyrazinamide | |
clpC1 | 4038596 | c.2109A>G | synonymous_variant | 0.2 | pyrazinamide | |
clpC1 | 4038602 | c.2103G>C | synonymous_variant | 0.21 | pyrazinamide | |
clpC1 | 4038755 | c.1950G>C | synonymous_variant | 0.21 | pyrazinamide | |
clpC1 | 4038767 | c.1938G>T | synonymous_variant | 0.18 | pyrazinamide | |
clpC1 | 4038770 | c.1935C>T | synonymous_variant | 0.18 | pyrazinamide | |
clpC1 | 4038773 | c.1932T>C | synonymous_variant | 0.17 | pyrazinamide | |
clpC1 | 4038776 | c.1929G>A | synonymous_variant | 0.17 | pyrazinamide | |
clpC1 | 4038779 | c.1926C>G | synonymous_variant | 0.21 | pyrazinamide | |
clpC1 | 4038782 | c.1923G>C | synonymous_variant | 0.2 | pyrazinamide | |
clpC1 | 4038790 | c.1915C>T | synonymous_variant | 0.22 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4038812 | c.1893T>C | synonymous_variant | 0.21 | pyrazinamide | |
clpC1 | 4038815 | c.1890G>C | synonymous_variant | 0.2 | pyrazinamide | |
clpC1 | 4038818 | c.1887G>A | synonymous_variant | 0.2 | pyrazinamide | |
clpC1 | 4038842 | c.1863G>C | synonymous_variant | 0.19 | pyrazinamide | |
clpC1 | 4038860 | c.1845G>C | synonymous_variant | 0.23 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4038878 | c.1827A>G | synonymous_variant | 0.2 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4038890 | c.1815G>A | synonymous_variant | 0.22 | pyrazinamide | |
clpC1 | 4038905 | c.1800A>G | synonymous_variant | 0.22 | pyrazinamide | |
clpC1 | 4038908 | c.1797C>G | synonymous_variant | 0.22 | pyrazinamide | |
clpC1 | 4038911 | c.1794G>T | synonymous_variant | 0.2 | pyrazinamide | |
clpC1 | 4038914 | c.1791G>C | synonymous_variant | 0.24 | pyrazinamide | |
clpC1 | 4038917 | c.1788C>T | synonymous_variant | 0.24 | pyrazinamide | |
clpC1 | 4038923 | c.1782A>G | synonymous_variant | 0.23 | pyrazinamide | |
clpC1 | 4038941 | c.1764G>C | synonymous_variant | 0.21 | pyrazinamide | |
clpC1 | 4038953 | c.1752A>G | synonymous_variant | 0.25 | pyrazinamide | |
clpC1 | 4038956 | c.1749T>C | synonymous_variant | 0.27 | pyrazinamide | |
clpC1 | 4038965 | c.1740T>C | synonymous_variant | 0.24 | pyrazinamide | |
clpC1 | 4038971 | c.1734T>C | synonymous_variant | 0.23 | pyrazinamide | |
clpC1 | 4038974 | c.1731T>C | synonymous_variant | 0.23 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4038989 | c.1716T>C | synonymous_variant | 0.22 | pyrazinamide | |
clpC1 | 4038997 | c.1708T>C | synonymous_variant | 0.21 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4039022 | c.1683A>G | synonymous_variant | 0.26 | pyrazinamide | |
clpC1 | 4039046 | c.1659C>T | synonymous_variant | 0.27 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4039064 | c.1641C>T | synonymous_variant | 0.22 | pyrazinamide | |
clpC1 | 4039079 | c.1626C>G | synonymous_variant | 0.24 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4039085 | c.1620A>G | synonymous_variant | 0.26 | pyrazinamide | |
clpC1 | 4039091 | c.1614G>C | synonymous_variant | 0.26 | pyrazinamide | |
clpC1 | 4039118 | c.1587C>A | synonymous_variant | 0.18 | pyrazinamide | |
clpC1 | 4039142 | c.1563A>G | synonymous_variant | 0.26 | pyrazinamide | |
clpC1 | 4039145 | c.1560G>C | synonymous_variant | 0.27 | pyrazinamide | |
clpC1 | 4039169 | c.1536A>G | synonymous_variant | 0.31 | pyrazinamide | |
clpC1 | 4039178 | c.1527G>C | synonymous_variant | 0.3 | pyrazinamide | |
clpC1 | 4039183 | c.1522T>C | synonymous_variant | 0.29 | pyrazinamide | |
clpC1 | 4039187 | c.1518G>T | synonymous_variant | 0.3 | pyrazinamide | |
clpC1 | 4039190 | c.1515C>G | synonymous_variant | 0.33 | pyrazinamide | |
clpC1 | 4039220 | c.1485G>C | synonymous_variant | 0.43 | pyrazinamide | |
clpC1 | 4039241 | c.1464G>C | synonymous_variant | 0.38 | pyrazinamide | |
clpC1 | 4039274 | c.1431G>C | synonymous_variant | 0.35 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4039286 | c.1419T>C | synonymous_variant | 0.38 | pyrazinamide | |
clpC1 | 4039295 | c.1410A>C | synonymous_variant | 0.38 | pyrazinamide | |
clpC1 | 4039298 | c.1407T>C | synonymous_variant | 0.37 | pyrazinamide | |
clpC1 | 4039310 | c.1395A>G | synonymous_variant | 0.33 | pyrazinamide | |
clpC1 | 4039313 | c.1392C>G | synonymous_variant | 0.31 | pyrazinamide | |
clpC1 | 4039320 | p.Ala462Gly | missense_variant | 0.27 | pyrazinamide | |
clpC1 | 4039322 | c.1383T>C | synonymous_variant | 0.25 | pyrazinamide | |
clpC1 | 4039328 | c.1377A>C | synonymous_variant | 0.25 | pyrazinamide | |
clpC1 | 4039352 | c.1353C>T | synonymous_variant | 0.28 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4039361 | c.1344C>G | synonymous_variant | 0.26 | pyrazinamide | |
clpC1 | 4039382 | c.1323C>G | synonymous_variant | 0.17 | pyrazinamide | |
clpC1 | 4039430 | c.1275T>C | synonymous_variant | 0.19 | pyrazinamide | |
clpC1 | 4039517 | c.1188C>G | synonymous_variant | 0.38 | pyrazinamide | |
clpC1 | 4039541 | c.1164C>G | synonymous_variant | 0.38 | pyrazinamide | |
clpC1 | 4039556 | c.1149G>C | synonymous_variant | 0.41 | pyrazinamide | |
clpC1 | 4039559 | c.1146C>G | synonymous_variant | 0.41 | pyrazinamide | |
clpC1 | 4039570 | p.Met379Leu | missense_variant | 0.4 | pyrazinamide | Uncertain significance |
clpC1 | 4039574 | p.Ala377Gly | missense_variant | 0.39 | pyrazinamide | |
clpC1 | 4039577 | c.1128T>C | synonymous_variant | 0.4 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4039589 | c.1116G>C | synonymous_variant | 0.43 | pyrazinamide | |
clpC1 | 4039592 | c.1113G>C | synonymous_variant | 0.43 | pyrazinamide | |
clpC1 | 4039610 | c.1095G>C | synonymous_variant | 0.35 | pyrazinamide | |
clpC1 | 4039616 | c.1089G>C | synonymous_variant | 0.26 | pyrazinamide | |
clpC1 | 4039622 | c.1083C>T | synonymous_variant | 0.3 | pyrazinamide | |
clpC1 | 4039649 | c.1056G>C | synonymous_variant | 0.28 | pyrazinamide | |
clpC1 | 4039652 | c.1053G>C | synonymous_variant | 0.28 | pyrazinamide | |
clpC1 | 4039670 | c.1035G>C | synonymous_variant | 0.28 | pyrazinamide | |
clpC1 | 4039682 | c.1023C>G | synonymous_variant | 0.27 | pyrazinamide | |
clpC1 | 4039694 | c.1011G>C | synonymous_variant | 0.23 | pyrazinamide | |
clpC1 | 4039724 | c.981A>G | synonymous_variant | 0.26 | pyrazinamide | |
clpC1 | 4039733 | c.972G>C | synonymous_variant | 0.2 | pyrazinamide | |
clpC1 | 4039793 | c.912C>G | synonymous_variant | 0.15 | pyrazinamide | |
clpC1 | 4039802 | c.903G>C | synonymous_variant | 0.14 | pyrazinamide | |
clpC1 | 4039823 | c.882T>C | synonymous_variant | 0.14 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4039832 | c.873C>A | synonymous_variant | 0.12 | pyrazinamide | |
clpC1 | 4039850 | c.855T>C | synonymous_variant | 0.16 | pyrazinamide | |
clpC1 | 4039865 | c.840T>C | synonymous_variant | 0.14 | pyrazinamide | |
clpC1 | 4039883 | c.822G>A | synonymous_variant | 0.17 | pyrazinamide | |
clpC1 | 4039889 | c.816G>C | synonymous_variant | 0.17 | pyrazinamide | |
clpC1 | 4039898 | c.807C>G | synonymous_variant | 0.17 | pyrazinamide | |
clpC1 | 4039904 | c.801A>G | synonymous_variant | 0.22 | pyrazinamide | |
clpC1 | 4039958 | c.747G>C | synonymous_variant | 0.23 | pyrazinamide | |
clpC1 | 4039991 | c.714G>C | synonymous_variant | 0.2 | pyrazinamide | |
clpC1 | 4040033 | c.672G>C | synonymous_variant | 0.21 | pyrazinamide | |
clpC1 | 4040042 | c.663C>T | synonymous_variant | 0.2 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4040249 | c.456A>G | synonymous_variant | 0.15 | pyrazinamide | |
clpC1 | 4040258 | c.447G>A | synonymous_variant | 0.15 | pyrazinamide | |
clpC1 | 4040267 | c.438A>G | synonymous_variant | 0.15 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4040277 | c.427_428delTCinsAG | synonymous_variant | 0.15 | pyrazinamide | |
clpC1 | 4040279 | c.426C>G | synonymous_variant | 0.17 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4040306 | c.399G>T | synonymous_variant | 0.17 | pyrazinamide | |
clpC1 | 4040309 | c.396C>G | synonymous_variant | 0.17 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4040324 | c.381G>C | synonymous_variant | 0.18 | pyrazinamide | |
panD | 4044195 | c.87T>C | synonymous_variant | 0.15 | pyrazinamide | |
panD | 4044210 | c.72C>T | synonymous_variant | 0.14 | pyrazinamide | |
panD | 4044213 | c.69C>G | synonymous_variant | 0.15 | pyrazinamide | |
glpK | 4138703 | c.1053C>G | synonymous_variant | 0.14 | levofloxacin | |
moxifloxacin | ||||||
isoniazid | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
glpK | 4138718 | c.1038T>C | synonymous_variant | 0.15 | levofloxacin | |
moxifloxacin | ||||||
isoniazid | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
glpK | 4139594 | c.162C>A | synonymous_variant | 0.21 | levofloxacin | |
moxifloxacin | ||||||
isoniazid | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
glpK | 4139602 | c.154C>A | synonymous_variant | 0.21 | levofloxacin | |
moxifloxacin | ||||||
isoniazid | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
glpK | 4139637 | p.Ala40Gly | missense_variant | 0.22 | levofloxacin | |
moxifloxacin | ||||||
isoniazid | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
glpK | 4139647 | p.Ala37Thr | missense_variant | 0.13 | levofloxacin | |
moxifloxacin | ||||||
isoniazid | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
glpK | 4139648 | c.108T>G | synonymous_variant | 0.13 | levofloxacin | |
moxifloxacin | ||||||
isoniazid | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
glpK | 4139652 | p.His35Ala | missense_variant | 0.13 | levofloxacin | |
moxifloxacin | ||||||
isoniazid | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
glpK | 4139672 | c.84C>G | synonymous_variant | 0.13 | levofloxacin | |
moxifloxacin | ||||||
isoniazid | ||||||
streptomycin | ||||||
rifampicin | ||||||
ethambutol | ||||||
embC | 4240717 | c.855T>C | synonymous_variant | 0.16 | ethambutol | |
embC | 4240777 | c.915G>A | synonymous_variant | 0.36 | ethambutol | Not assoc w R - Interim |
embC | 4240780 | c.918T>C | synonymous_variant | 0.36 | ethambutol | |
embC | 4240783 | c.921G>C | synonymous_variant | 0.36 | ethambutol | |
embC | 4240789 | c.927T>C | synonymous_variant | 0.35 | ethambutol | |
embC | 4240819 | c.957A>C | synonymous_variant | 0.27 | ethambutol | |
embC | 4240828 | c.966G>A | synonymous_variant | 0.27 | ethambutol | |
embC | 4240831 | c.969T>G | synonymous_variant | 0.26 | ethambutol | |
embC | 4242550 | c.2688C>G | synonymous_variant | 1.0 | ethambutol | Not assoc w R |
embC | 4242643 | c.2781C>T | synonymous_variant | 1.0 | ethambutol | Not assoc w R |
embC | 4242872 | p.Asp1004Thr | missense_variant | 0.15 | ethambutol | |
embC | 4242878 | p.Thr1006Val | missense_variant | 0.17 | ethambutol | |
embA | 4245071 | c.1839G>C | synonymous_variant | 0.14 | ethambutol | |
embA | 4245083 | c.1851A>C | synonymous_variant | 0.14 | ethambutol | |
embA | 4245089 | c.1857G>C | synonymous_variant | 0.14 | ethambutol | |
embA | 4245092 | c.1860C>G | synonymous_variant | 0.14 | ethambutol | |
embA | 4245094 | p.Ile621Thr | missense_variant | 0.14 | ethambutol | |
embA | 4245125 | c.1893G>C | synonymous_variant | 0.12 | ethambutol | |
embB | 4248157 | c.1644A>G | synonymous_variant | 0.2 | ethambutol | Not assoc w R - Interim |
embB | 4248158 | p.Cys549Ser | missense_variant | 0.2 | ethambutol | |
embB | 4248167 | p.Thr552Ala | missense_variant | 0.2 | ethambutol | |
embB | 4248170 | p.Ala553Ser | missense_variant | 0.21 | ethambutol | |
embB | 4248173 | p.Val554Leu | missense_variant | 0.22 | ethambutol | |
embB | 4248199 | c.1686A>G | synonymous_variant | 0.25 | ethambutol | |
embB | 4248200 | p.Ile563Val | missense_variant | 0.25 | ethambutol | |
embB | 4248206 | p.Ser565Gly | missense_variant | 0.29 | ethambutol | Uncertain significance |
embB | 4248220 | c.1707A>G | synonymous_variant | 0.26 | ethambutol | Not assoc w R - Interim |
embB | 4248225 | p.Ala571Val | missense_variant | 0.28 | ethambutol | Uncertain significance |
embB | 4248233 | c.1720C>T | synonymous_variant | 0.3 | ethambutol | |
embB | 4248242 | p.Val577Ile | missense_variant | 0.3 | ethambutol | |
embB | 4248252 | p.Gly580Ala | missense_variant | 0.24 | ethambutol | |
embB | 4248256 | c.1743C>G | synonymous_variant | 0.24 | ethambutol | |
embB | 4248264 | p.Phe584Cys | missense_variant | 0.25 | ethambutol | |
embB | 4248277 | c.1764G>C | synonymous_variant | 0.2 | ethambutol | |
aftB | 4267272 | p.Lys522Arg | missense_variant | 1.0 | ethambutol | Not assoc w R |
ethA | 4326739 | c.735C>G | synonymous_variant | 1.0 | ethionamide | Not assoc w R - Interim |
ethR | 4328004 | c.456G>A | synonymous_variant | 1.0 | ethionamide | Not assoc w R - Interim |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 | kanamycin | Not assoc w R |
capreomycin | Not assoc w R | |||||
amikacin | Not assoc w R | |||||
whiB6 | 4338732 | c.-211C>T | upstream_gene_variant | 1.0 | kanamycin | |
capreomycin | ||||||
amikacin |