Rv3596c - c.1485G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
130 Sensitive
3 RR-TB
43 HR-TB
9 MDR-TB
4 Pre-XDR-TB
0 XDR-TB
56 Other
lineage Counts
| lineage | Count |
|---|---|
| La1.7;lineage4.9 | 1 |
| lineage4.9 | 159 |
| lineage4.8;lineage4.9 | 2 |
| lineage4.1.1.3;lineage4.9 | 2 |
| lineage3.1.3 | 2 |
| lineage4.3.4 | 1 |
| lineage4.3.3 | 4 |
| lineage4.1.2.1 | 5 |
| lineage2.2;lineage4.9 | 1 |
| lineage2.2.1 | 13 |
| lineage4.1;lineage4.9 | 2 |
| lineage4.4.1.1 | 1 |
| lineage1.1.2 | 2 |
| lineage4.3.4.2.1 | 3 |
| lineage5.1.2 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage3 | 5 |
| lineage4.1.1.3 | 2 |
| lineage4 | 4 |
| lineage4.2.1 | 1 |
| lineage4.8 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| 3 | |
| lineage1.1.1;lineage4 | 1 |
| La1.6;lineage4 | 1 |
| lineage1;lineage4.9 | 2 |
| La1.8.1 | 1 |
| lineage2.2.1;lineage4 | 2 |
| La2;lineage4.9 | 1 |
| lineage4.1.1.2 | 1 |
| lineage4.6.2.2 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| La1;lineage4.9 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage4.3.2.1 | 1 |
| lineage1.1.3.1 | 1 |
| lineage3.1 | 1 |
| lineage5.1.4 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.5 | 1 |
| La2;lineage2.2 | 1 |
| lineage1.2.1.1 | 1 |
| lineage4.3.4.1 | 1 |
| lineage4.3 | 1 |
| lineage4.1.2 | 2 |
| lineage3;lineage4.9 | 1 |
| La1.2.BCG | 1 |
| lineage2.2.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 245 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR405209 | Sensitive | La1.7;lineage4.9 | None | ERR4769442 | Sensitive | lineage4.9 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | ERR926165 | Sensitive | lineage4.9 | None | SRR3675477 | Sensitive | lineage4.9 | None | ERR4796254 | Sensitive | lineage4.9 | None | ERR6866807 | Other | lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR363500 | Sensitive | lineage4.9 | None | SRR7535082 | Sensitive | lineage4.9 | None | SRR1158918 | Sensitive | lineage4.9 | None | ERR323066 | Sensitive | lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | SRR1175496 | Sensitive | lineage4.9 | None | ERR369163 | Sensitive | lineage4.9 | None | ERR369151 | Other | lineage4.9 | None | ERR473323 | HR-TB | lineage4.9 | None | SRR3675580 | Sensitive | lineage4.9 | None | ERR502511 | Sensitive | lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR3675522 | Other | lineage4.9 | None | SRR1159378 | Other | lineage4.9 | None | SRR12708384 | Sensitive | lineage4.9 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR6866410 | Sensitive | lineage4.9 | None | ERR702405 | Sensitive | lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | SRR3675279 | Sensitive | lineage4.9 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4.9 | None | ERR4815550 | Other | lineage2.2;lineage4.9 | None | ERR067712 | Sensitive | lineage4.9 | None | SRR5341425 | Other | lineage4.9 | None | ERR4798099 | Other | lineage4.9 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR349265 | Other | lineage4.9 | None | ERR373945 | Sensitive | lineage4.9 | None | SRR12708374 | Sensitive | lineage4.1;lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | ERR363437 | Sensitive | lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | ERR363426 | Sensitive | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | ERR245675 | Sensitive | lineage1.1.2 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR11465628 | Sensitive | lineage4.3.4.2.1 | None | ERR400538 | RR-TB | lineage5.1.2 | None | SRR6046897 | Sensitive | lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR4596902 | MDR-TB | lineage3 | None | ERR6865513 | Other | lineage4.1.2.1 | None | SRR5341461 | HR-TB | lineage4.9 | None | ERR349299 | Other | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR6046245 | Other | lineage4.9 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | ERR400336 | Sensitive | lineage4.9 | None | ERR11465235 | Sensitive | lineage4.3.4.2.1 | None | SRR6045371 | Other | lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | ERR926163 | Other | lineage4.9 | None | ERR2512770 | Sensitive | lineage4.2.1 | None | ERR349298 | Sensitive | lineage4.9 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | SRR6046564 | Sensitive | lineage4.9 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675541 | Sensitive | lineage4.9 | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | ERR4817998 | Other | lineage3 | None | ERR363445 | Other | lineage4.9 | None | SRR3675247 | Other | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR5341308 | Sensitive | lineage4.9 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | SRR6045706 | Sensitive | lineage4.9 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR373946 | Sensitive | lineage4.9 | None | ERR779852 | Sensitive | lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR5341298 | Sensitive | lineage4.9 | None | SRR12708416 | Sensitive | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | SRR5341299 | HR-TB | lineage4.9 | None | SRR5341469 | HR-TB | lineage4.9 | None | SRR1180996 | Sensitive | lineage4.9 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR20632814 | Sensitive | lineage4.9 | None | ERR181824 | HR-TB | lineage4.9 | None | ERR349264 | Sensitive | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | ERR363446 | Sensitive | lineage4.9 | None | ERR926156 | Sensitive | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR28351554 | Sensitive | La1.6;lineage4 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | SRR7236177 | Other | La1.8.1 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR926157 | Sensitive | lineage4.9 | None | ERR369162 | Other | lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | SRR6046611 | Sensitive | lineage4.9 | None | ERR363498 | Sensitive | lineage4.9 | None | ERR4798823 | HR-TB | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | SRR3675265 | Other | lineage4 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | SRR5341455 | Sensitive | lineage4.9 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR13285068 | Sensitive | lineage4.9 | None | SRR3675455 | Sensitive | lineage4.9 | None | ERR363479 | Sensitive | lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR6865502 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4.9 | None | ERR363474 | Sensitive | lineage4.9 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | ERR4178226 | Sensitive | lineage4 | None | ERR4818252 | Sensitive | lineage4.1.1.2 | None | ERR4819809 | HR-TB | lineage4.6.2.2 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | SRR1175508 | Sensitive | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR9786076 | Sensitive | lineage3 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | SRR5341323 | Sensitive | lineage4.9 | None | SRR6046802 | Other | lineage4.9 | None | ERR751326 | Other | lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR363499 | Sensitive | lineage4.9 | None | ERR212138 | HR-TB | lineage4.9 | None | SRR1172885 | HR-TB | lineage4.9 | None | ERR4596910 | Sensitive | lineage4.9 | None | ERR4799378 | Sensitive | lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675387 | Other | lineage4.9 | None | ERR6358951 | Sensitive | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR6866639 | Other | lineage4.9 | None | SRR3675229 | Sensitive | lineage4.9 | None | ERR369160 | Sensitive | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR4819546 | HR-TB | lineage3 | None | ERR926164 | Other | lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR363502 | Other | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR5341437 | Sensitive | lineage4.9 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR28351442 | HR-TB | lineage3.1 | None | ERR373947 | Other | lineage4.9 | None | SRR5341467 | Other | lineage4.9 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | ERR363456 | Sensitive | lineage4.9 | None | SRR28351342 | HR-TB | lineage2.2.1;lineage4 | None | ERR369159 | Sensitive | lineage4.9 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR349330 | Sensitive | lineage4.9 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR323062 | Sensitive | lineage4.9 | None | SRR1175052 | HR-TB | lineage4.9 | None | ERR4816762 | Sensitive | lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | ERR4769444 | HR-TB | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None | ERR363453 | Sensitive | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR1063896 | Sensitive | None | ERR369158 | Other | lineage4.9 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | ERR363506 | Sensitive | lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR363490 | Sensitive | lineage4.9 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR4814734 | Other | lineage1.2.1.1 | None | SRR16156775 | Other | lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | SRR5341366 | Sensitive | lineage4.9 | None | ERR4814396 | Sensitive | lineage4.1.1.3 | None | SRR11662694 | Other | lineage4.9 | None | ERR11465152 | Sensitive | lineage4.3.4.1 | None | ERR4816470 | HR-TB | lineage3 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR176779 | HR-TB | lineage4.9 | None | ERR363509 | Sensitive | lineage4.9 | None | ERR867542 | HR-TB | lineage4.3 | None | SRR5341303 | Sensitive | lineage4.9 | None | SRR12708372 | Sensitive | lineage4.9 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR971389 | Sensitive | lineage4.9 | None | ERR11465232 | Sensitive | lineage4.1.2.1 | None | ERR1035122 | Sensitive | lineage4.9 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR323085 | Sensitive | lineage4.9 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | SRR6045892 | Sensitive | lineage4.9 | None | SRR5341396 | Other | lineage3;lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | SRR1915487 | Other | La1.2.BCG | None | ERR4815815 | Sensitive | lineage4.9 | None | ERR349296 | Sensitive | lineage4.9 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | SRR12708419 | Other | lineage4.3.3 | None | SRR5341387 | Other | lineage4.9 | None |
|---|
