TB-Profiler result

Run: ERR4596902
Summary

Run ID: ERR4596902

Sample name:

Date: 01-04-2023 06:28:26

Number of reads: 2642192

Percentage reads mapped: 46.04

Strain: lineage3

Drug-resistance: HR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage3 East-African-Indian CAS RD750 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
katG 2154405 c.1706delC frameshift_variant 1.0 isoniazid, isoniazid
katG 2155762 c.349dupG frameshift_variant 0.19 isoniazid
katG 2155767 c.344delT frameshift_variant 0.19 isoniazid
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 8894 c.1593C>G synonymous_variant 0.14
gyrA 8897 c.1596T>C synonymous_variant 0.14
gyrA 8903 c.1602T>C synonymous_variant 0.14
gyrA 8915 c.1614A>G synonymous_variant 0.15
gyrA 8933 c.1632G>C synonymous_variant 0.15
gyrA 8934 p.Gln545Lys missense_variant 0.15
gyrA 8939 c.1638T>C synonymous_variant 0.16
gyrA 8944 p.Gly548Asp missense_variant 0.16
gyrA 8946 c.1645_1647delTTGinsCTC synonymous_variant 0.15
gyrA 8966 c.1665C>G synonymous_variant 0.16
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491742 c.960T>C synonymous_variant 1.0
rpoB 760181 c.375T>G synonymous_variant 0.22
rpoB 760184 c.378A>G synonymous_variant 0.22
rpoB 760223 c.417T>C synonymous_variant 0.27
rpoB 760233 c.427_429delAGTinsTCG synonymous_variant 0.28
rpoB 760241 c.435G>C synonymous_variant 0.27
rpoB 760244 c.438G>C synonymous_variant 0.25
rpoB 760253 c.447T>C synonymous_variant 0.27
rpoB 760256 c.450C>T synonymous_variant 0.26
rpoB 760262 c.456G>C synonymous_variant 0.27
rpoB 760271 c.465C>G synonymous_variant 0.29
rpoB 760274 p.Glu156Asp missense_variant 0.29
rpoB 760298 c.492G>C synonymous_variant 0.26
rpoB 760307 c.501T>C synonymous_variant 0.15
rpoB 760357 p.Thr184Asn missense_variant 0.18
rpoB 760361 c.555T>C synonymous_variant 0.21
rpoB 760370 c.564C>G synonymous_variant 0.25
rpoB 760376 p.Asp190Glu missense_variant 0.28
rpoB 760380 p.Thr192Pro missense_variant 0.29
rpoB 760394 c.588C>G synonymous_variant 0.34
rpoB 760400 c.594G>C synonymous_variant 0.34
rpoB 760407 p.Ser201Ala missense_variant 0.34
rpoB 760430 c.624T>C synonymous_variant 0.42
rpoB 760460 c.654G>C synonymous_variant 0.46
rpoB 760475 c.669A>G synonymous_variant 0.48
rpoB 760478 c.672C>T synonymous_variant 0.49
rpoB 760481 c.675G>C synonymous_variant 0.49
rpoB 760484 c.678A>G synonymous_variant 0.49
rpoB 760487 c.681G>C synonymous_variant 0.5
rpoB 760511 c.705G>C synonymous_variant 0.48
rpoB 760532 c.726T>C synonymous_variant 0.43
rpoB 760533 p.Val243Leu missense_variant 0.43
rpoB 760541 c.735G>C synonymous_variant 0.42
rpoB 760547 c.741G>C synonymous_variant 0.41
rpoB 760553 c.747C>G synonymous_variant 0.45
rpoB 760565 c.759A>G synonymous_variant 0.44
rpoB 760568 c.762G>C synonymous_variant 0.44
rpoB 760571 c.765G>C synonymous_variant 0.46
rpoB 760589 c.783C>G synonymous_variant 0.4
rpoB 760591 p.Val262Ala missense_variant 0.41
rpoB 760611 c.805_807delTTGinsCTC synonymous_variant 0.39
rpoB 760634 c.828T>C synonymous_variant 0.38
rpoB 760646 c.840C>G synonymous_variant 0.34
rpoB 760649 c.843G>C synonymous_variant 0.32
rpoB 760652 c.846C>G synonymous_variant 0.28
rpoB 760655 c.849A>G synonymous_variant 0.29
rpoB 760661 c.855A>G synonymous_variant 0.29
rpoB 760670 c.864G>C synonymous_variant 0.29
rpoB 760674 c.868T>C synonymous_variant 0.28
rpoB 760679 c.873A>G synonymous_variant 0.26
rpoB 760683 c.877T>C synonymous_variant 0.26
rpoB 760916 c.1110C>T synonymous_variant 0.16
rpoB 760925 c.1119T>C synonymous_variant 0.16
rpoB 760928 c.1122G>C synonymous_variant 0.16
rpoB 760946 c.1140A>G synonymous_variant 0.18
rpoB 760953 p.Ile383Leu missense_variant 0.16
rpoB 760958 c.1152G>C synonymous_variant 0.16
rpoB 760961 c.1155C>G synonymous_variant 0.16
rpoB 760965 p.Met387Leu missense_variant 0.16
rpoB 760970 c.1164G>C synonymous_variant 0.18
rpoB 760973 c.1167G>C synonymous_variant 0.17
rpoB 760982 c.1176G>C synonymous_variant 0.18
rpoB 760985 c.1179G>C synonymous_variant 0.19
rpoB 760988 c.1182C>G synonymous_variant 0.19
rpoB 760991 c.1185G>T synonymous_variant 0.19
rpoB 760997 c.1191G>C synonymous_variant 0.24
rpoB 761006 c.1200C>G synonymous_variant 0.26
rpoB 761015 c.1209G>C synonymous_variant 0.28
rpoB 761027 c.1221A>C synonymous_variant 0.27
rpoB 761036 c.1230G>C synonymous_variant 0.23
rpoB 761037 c.1231T>C synonymous_variant 0.22
rpoB 761051 c.1245G>C synonymous_variant 0.14
rpoB 761057 c.1251G>C synonymous_variant 0.15
rpoB 761058 p.Val418Ser missense_variant 0.15
rpoB 761063 c.1257C>G synonymous_variant 0.16
rpoB 761098 c.1294_1299dupCAATTC conservative_inframe_insertion 1.0
rpoB 761111 c.1305C>T synonymous_variant 0.17
rpoB 761126 c.1320G>C synonymous_variant 0.29
rpoB 761132 c.1326G>C synonymous_variant 0.3
rpoB 761133 c.1327T>C synonymous_variant 0.3
rpoB 761150 c.1344A>C synonymous_variant 0.43
rpoB 761162 c.1356G>C synonymous_variant 0.46
rpoB 761165 c.1359G>C synonymous_variant 0.46
rpoB 761171 c.1365C>T synonymous_variant 0.5
rpoB 761180 c.1374A>G synonymous_variant 0.5
rpoB 761189 c.1383T>C synonymous_variant 0.53
rpoB 761195 c.1389G>C synonymous_variant 0.55
rpoB 761198 c.1392G>C synonymous_variant 0.55
rpoB 761213 c.1407G>C synonymous_variant 0.57
rpoB 761234 c.1428G>C synonymous_variant 0.54
rpoB 761249 c.1443A>G synonymous_variant 0.51
rpoB 761261 c.1455G>C synonymous_variant 0.41
rpoB 761264 c.1458C>G synonymous_variant 0.38
rpoB 761273 c.1467T>C synonymous_variant 0.34
rpoB 761288 c.1482G>C synonymous_variant 0.24
rpoB 761318 c.1512G>C synonymous_variant 0.15
rpoB 761529 p.Val575Ile missense_variant 0.16
rpoB 761537 c.1731C>G synonymous_variant 0.24
rpoB 761549 c.1743G>C synonymous_variant 0.3
rpoB 761555 c.1749G>C synonymous_variant 0.33
rpoB 761558 c.1752C>G synonymous_variant 0.33
rpoB 761570 c.1764T>C synonymous_variant 0.38
rpoB 761573 c.1767C>G synonymous_variant 0.36
rpoB 761579 c.1773G>C synonymous_variant 0.37
rpoB 761612 c.1806G>C synonymous_variant 0.33
rpoB 761615 c.1809A>G synonymous_variant 0.32
rpoB 761627 c.1821C>T synonymous_variant 0.31
rpoB 761633 c.1827G>C synonymous_variant 0.32
rpoB 761649 c.1843_1844delAGinsTC synonymous_variant 0.29
rpoB 761655 p.Ala617Ser missense_variant 0.27
rpoB 761666 c.1860G>C synonymous_variant 0.26
rpoB 761675 c.1869G>T synonymous_variant 0.25
rpoB 761690 c.1884G>C synonymous_variant 0.16
rpoB 761694 p.Ile630Val missense_variant 0.15
rpoB 761916 p.Asp704Asn missense_variant 0.14
rpoB 761933 c.2127G>C synonymous_variant 0.2
rpoB 761948 c.2142G>C synonymous_variant 0.26
rpoB 761954 c.2148C>G synonymous_variant 0.25
rpoB 761999 c.2193G>C synonymous_variant 0.42
rpoB 762002 c.2196C>G synonymous_variant 0.4
rpoB 762003 p.Asn733Gln missense_variant 0.42
rpoB 762014 c.2208C>G synonymous_variant 0.41
rpoB 762017 c.2211A>G synonymous_variant 0.42
rpoB 762032 c.2226C>G synonymous_variant 0.4
rpoB 762035 c.2229G>C synonymous_variant 0.41
rpoB 762053 c.2247T>C synonymous_variant 0.4
rpoB 762065 c.2259T>G synonymous_variant 0.45
rpoB 762074 c.2268C>G synonymous_variant 0.44
rpoB 762083 c.2277T>C synonymous_variant 0.42
rpoB 762086 c.2280G>C synonymous_variant 0.43
rpoB 762101 c.2295C>G synonymous_variant 0.44
rpoB 762114 p.Ile770Val missense_variant 0.44
rpoB 762131 c.2325C>G synonymous_variant 0.39
rpoB 762137 c.2331C>T synonymous_variant 0.38
rpoB 762140 c.2334G>C synonymous_variant 0.39
rpoB 762143 c.2337T>C synonymous_variant 0.41
rpoB 762149 c.2343G>C synonymous_variant 0.41
rpoB 762156 p.Val784Ile missense_variant 0.45
rpoB 762167 c.2361T>C synonymous_variant 0.5
rpoB 762176 c.2370T>C synonymous_variant 0.52
rpoB 762185 c.2379G>C synonymous_variant 0.53
rpoB 762218 c.2412T>C synonymous_variant 0.5
rpoB 762233 c.2427G>C synonymous_variant 0.48
rpoB 762245 c.2439G>C synonymous_variant 0.45
rpoB 762251 c.2445G>C synonymous_variant 0.41
rpoB 762254 c.2448T>C synonymous_variant 0.41
rpoB 762257 c.2451C>G synonymous_variant 0.4
rpoB 762275 c.2469C>G synonymous_variant 0.34
rpoB 762284 c.2478G>C synonymous_variant 0.31
rpoB 762293 c.2487T>C synonymous_variant 0.28
rpoB 762299 c.2493G>C synonymous_variant 0.28
rpoB 762308 c.2502G>C synonymous_variant 0.23
rpoB 762317 c.2511A>G synonymous_variant 0.14
rpoB 762318 p.Ser838Thr missense_variant 0.14
rpoC 762434 c.-936T>G upstream_gene_variant 0.98
rpoC 762782 c.-588T>C upstream_gene_variant 0.17
rpoB 762789 p.Leu995Met missense_variant 0.18
rpoB 762795 p.Asp997Gln missense_variant 0.18
rpoC 762812 c.-558C>G upstream_gene_variant 0.16
rpoB 762814 p.Met1003Thr missense_variant 0.15
rpoC 762818 c.-552C>G upstream_gene_variant 0.16
rpoC 762827 c.-543G>C upstream_gene_variant 0.17
rpoC 762831 c.-539_-537delAGCinsTCG upstream_gene_variant 0.16
rpoC 762836 c.-534C>T upstream_gene_variant 0.17
rpoC 762842 c.-528G>C upstream_gene_variant 0.19
rpoC 762857 c.-513C>G upstream_gene_variant 0.18
rpoB 762858 p.Thr1018Ala missense_variant 0.18
rpoB 762861 p.Val1019Ile missense_variant 0.17
rpoB 762879 p.Met1025Leu missense_variant 0.31
rpoB 762905 p.Asp1033Glu missense_variant 0.39
rpoC 762929 c.-441G>C upstream_gene_variant 0.41
rpoC 762947 c.-423C>G upstream_gene_variant 0.4
rpoC 762962 c.-408C>T upstream_gene_variant 0.5
rpoC 762989 c.-381G>C upstream_gene_variant 0.56
rpoC 762995 c.-375G>C upstream_gene_variant 0.57
rpoC 763013 c.-357C>G upstream_gene_variant 0.57
rpoC 763022 c.-348C>G upstream_gene_variant 0.57
rpoC 763028 c.-342T>C upstream_gene_variant 0.56
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoC 763052 c.-318G>C upstream_gene_variant 0.5
rpoC 763053 c.-317_-315delTTGinsCTC upstream_gene_variant 0.5
rpoC 763067 c.-303C>G upstream_gene_variant 0.48
rpoC 763070 c.-300T>C upstream_gene_variant 0.47
rpoB 763074 p.Thr1090Val missense_variant 0.47
rpoC 763088 c.-282C>G upstream_gene_variant 0.46
rpoC 763115 c.-255T>C upstream_gene_variant 0.35
rpoC 763127 c.-243G>C upstream_gene_variant 0.31
rpoC 763133 c.-237G>C upstream_gene_variant 0.29
rpoC 763160 c.-210G>C upstream_gene_variant 0.17
rpoC 763456 c.87A>G synonymous_variant 0.2
rpoC 763462 c.93G>C synonymous_variant 0.23
rpoC 763468 c.99G>C synonymous_variant 0.24
rpoC 763486 c.117T>C synonymous_variant 0.38
rpoC 763492 c.123G>C synonymous_variant 0.4
rpoC 763507 c.138G>C synonymous_variant 0.45
rpoC 763528 c.159G>C synonymous_variant 0.54
rpoC 763546 c.177A>G synonymous_variant 0.55
rpoC 763570 c.201G>C synonymous_variant 0.59
rpoC 763573 c.204G>C synonymous_variant 0.59
rpoC 763615 c.246G>C synonymous_variant 0.58
rpoC 763618 c.249C>T synonymous_variant 0.59
rpoC 763660 c.291T>C synonymous_variant 0.57
rpoC 763696 c.327T>C synonymous_variant 0.43
rpoC 763699 c.330G>C synonymous_variant 0.43
rpoC 763702 c.333C>G synonymous_variant 0.42
rpoC 763708 c.339G>C synonymous_variant 0.42
rpoC 763709 c.340C>T synonymous_variant 0.42
rpoC 763714 c.345G>C synonymous_variant 0.41
rpoC 763717 c.348T>C synonymous_variant 0.42
rpoC 763732 c.363C>G synonymous_variant 0.39
rpoC 763741 c.372C>T synonymous_variant 0.35
rpoC 763744 c.375G>C synonymous_variant 0.35
rpoC 763765 c.396T>C synonymous_variant 0.26
rpoC 763781 p.Ser138Glu missense_variant 0.25
rpoC 763796 p.Met143Gln missense_variant 0.21
rpoC 763807 c.438T>C synonymous_variant 0.2
rpoC 763812 p.Leu148Gln missense_variant 0.17
rpoC 764127 p.Thr253Lys missense_variant 0.17
rpoC 764131 c.762T>C synonymous_variant 0.23
rpoC 764143 c.774G>C synonymous_variant 0.24
rpoC 764147 p.Ser260Ala missense_variant 0.24
rpoC 764153 p.Gln262Lys missense_variant 0.25
rpoC 764161 c.792G>C synonymous_variant 0.28
rpoC 764188 c.819A>G synonymous_variant 0.32
rpoC 764203 c.834G>C synonymous_variant 0.31
rpoC 764206 p.Asp279Glu missense_variant 0.3
rpoC 764207 p.Val280Thr missense_variant 0.3
rpoC 764215 c.846A>C synonymous_variant 0.32
rpoC 764216 p.Asn283Ser missense_variant 0.32
rpoC 764227 c.858G>A synonymous_variant 0.4
rpoC 764239 c.870T>C synonymous_variant 0.45
rpoC 764257 c.888G>C synonymous_variant 0.46
rpoC 764263 c.894G>C synonymous_variant 0.41
rpoC 764266 c.897T>C synonymous_variant 0.41
rpoC 764278 c.909A>G synonymous_variant 0.45
rpoC 764297 p.Met310Leu missense_variant 0.46
rpoC 764308 c.939G>C synonymous_variant 0.45
rpoC 764320 c.951C>G synonymous_variant 0.41
rpoC 764353 c.984G>C synonymous_variant 0.52
rpoC 764365 c.996C>T synonymous_variant 0.55
rpoC 764387 c.1018T>C synonymous_variant 0.5
rpoC 764398 c.1029G>C synonymous_variant 0.45
rpoC 764404 c.1035C>T synonymous_variant 0.45
rpoC 764405 c.1036_1038delAGGinsCGC synonymous_variant 0.44
rpoC 764428 c.1059G>C synonymous_variant 0.4
rpoC 764431 c.1062G>C synonymous_variant 0.38
rpoC 764434 c.1065A>G synonymous_variant 0.38
rpoC 764435 c.1066_1068delAGGinsCGA synonymous_variant 0.38
rpoC 764446 c.1077T>C synonymous_variant 0.36
rpoC 764449 c.1080G>C synonymous_variant 0.35
rpoC 764452 c.1083T>C synonymous_variant 0.36
rpoC 764458 c.1089G>C synonymous_variant 0.38
rpoC 764461 c.1092A>G synonymous_variant 0.38
rpoC 764497 c.1128A>G synonymous_variant 0.45
rpoC 764503 c.1134G>C synonymous_variant 0.45
rpoC 764521 c.1152T>C synonymous_variant 0.44
rpoC 764536 c.1167G>T synonymous_variant 0.47
rpoC 764539 c.1170C>G synonymous_variant 0.46
rpoC 764548 c.1179G>A synonymous_variant 0.52
rpoC 764560 c.1191T>C synonymous_variant 0.51
rpoC 764575 c.1206T>G synonymous_variant 0.52
rpoC 764611 c.1242G>C synonymous_variant 0.51
rpoC 764632 c.1263T>C synonymous_variant 0.54
rpoC 764635 c.1266C>G synonymous_variant 0.52
rpoC 764650 c.1281G>T synonymous_variant 0.45
rpoC 764662 c.1293G>C synonymous_variant 0.42
rpoC 764665 c.1296C>G synonymous_variant 0.42
rpoC 764695 c.1326T>C synonymous_variant 0.39
rpoC 764701 c.1332C>G synonymous_variant 0.41
rpoC 764716 c.1347G>C synonymous_variant 0.4
rpoC 764746 c.1377G>C synonymous_variant 0.43
rpoC 764755 c.1386C>T synonymous_variant 0.44
rpoC 764764 c.1395T>C synonymous_variant 0.46
rpoC 764780 c.1411_1413delAGCinsTCG synonymous_variant 0.43
rpoC 764791 c.1422C>G synonymous_variant 0.43
rpoC 764797 c.1428G>C synonymous_variant 0.44
rpoC 764803 c.1434C>G synonymous_variant 0.46
rpoC 764809 c.1440C>G synonymous_variant 0.46
rpoC 764812 c.1443C>G synonymous_variant 0.43
rpoC 764815 c.1446A>G synonymous_variant 0.42
rpoC 764824 c.1455T>C synonymous_variant 0.45
rpoC 764827 c.1458G>C synonymous_variant 0.49
rpoC 764854 c.1485G>C synonymous_variant 0.52
rpoC 764858 c.1489T>C synonymous_variant 0.52
rpoC 764863 c.1494G>C synonymous_variant 0.51
rpoC 764869 c.1500C>T synonymous_variant 0.51
rpoC 764872 c.1503A>C synonymous_variant 0.5
rpoC 764878 c.1509C>G synonymous_variant 0.44
rpoC 764887 c.1518G>C synonymous_variant 0.41
rpoC 764888 c.1519T>C synonymous_variant 0.4
rpoC 764893 c.1524T>C synonymous_variant 0.4
rpoC 764911 c.1542A>G synonymous_variant 0.35
rpoC 764912 p.Met515Gln missense_variant 0.33
rpoC 764917 c.1548G>C synonymous_variant 0.33
rpoC 764920 c.1551G>C synonymous_variant 0.33
rpoC 764923 c.1554A>G synonymous_variant 0.34
rpoC 764935 c.1566T>C synonymous_variant 0.34
rpoC 764948 c.1579_1581delTTGinsCTC synonymous_variant 0.33
rpoC 764953 c.1584G>C synonymous_variant 0.31
rpoC 764968 c.1599T>C synonymous_variant 0.34
rpoC 765004 c.1635G>C synonymous_variant 0.23
rpoC 765007 c.1638T>G synonymous_variant 0.2
rpoC 765008 c.1639T>C synonymous_variant 0.2
rpoC 765011 c.1642_1643delAGinsTC synonymous_variant 0.21
rpoC 765016 c.1647C>G synonymous_variant 0.22
rpoC 765019 c.1650A>G synonymous_variant 0.22
rpoC 765034 c.1665T>C synonymous_variant 0.24
rpoC 765040 c.1671T>C synonymous_variant 0.23
rpoC 765041 c.1672T>C synonymous_variant 0.23
rpoC 765047 c.1678T>C synonymous_variant 0.24
rpoC 765055 c.1686C>G synonymous_variant 0.25
rpoC 765076 c.1707A>G synonymous_variant 0.27
rpoC 765079 c.1710T>G synonymous_variant 0.27
rpoC 765082 c.1713G>C synonymous_variant 0.27
rpoC 765085 c.1716T>C synonymous_variant 0.29
rpoC 765089 c.1720_1722delTTGinsCTC synonymous_variant 0.3
rpoC 765100 c.1731G>C synonymous_variant 0.31
rpoC 765103 c.1734G>T synonymous_variant 0.31
rpoC 765121 c.1752G>C synonymous_variant 0.28
rpoC 765128 p.Tyr587His missense_variant 0.18
rpoC 765478 c.2109T>G synonymous_variant 0.35
rpoC 765499 c.2130C>G synonymous_variant 0.37
rpoC 765544 c.2175C>G synonymous_variant 0.36
rpoC 765547 c.2178C>T synonymous_variant 0.37
rpoC 765548 c.2179_2181delAGCinsTCG synonymous_variant 0.37
rpoC 765562 c.2193G>C synonymous_variant 0.39
rpoC 765569 p.Ala734Ser missense_variant 0.38
rpoC 765580 c.2211G>C synonymous_variant 0.37
rpoC 765583 c.2214G>T synonymous_variant 0.37
rpoC 765590 p.Arg741Ser missense_variant 0.36
rpoC 765601 p.Glu744Asp missense_variant 0.35
rpoC 765612 p.His748Arg missense_variant 0.19
rpoC 765844 c.2475C>G synonymous_variant 0.16
rpoC 765875 p.Val836Ile missense_variant 0.33
rpoC 765886 c.2517C>G synonymous_variant 0.37
rpoC 765892 c.2523T>C synonymous_variant 0.37
rpoC 765904 c.2535C>G synonymous_variant 0.39
rpoC 765940 c.2571A>T synonymous_variant 0.32
rpoC 765946 c.2577C>T synonymous_variant 0.28
rpoC 765947 c.2578T>C synonymous_variant 0.27
rpoC 765952 c.2583G>C synonymous_variant 0.29
rpoC 765955 c.2586C>T synonymous_variant 0.29
rpoC 765961 c.2592G>T synonymous_variant 0.31
rpoC 765962 c.2593T>C synonymous_variant 0.31
rpoC 765967 c.2598C>T synonymous_variant 0.32
rpoC 765979 c.2610C>G synonymous_variant 0.32
rpoC 765994 c.2625A>T synonymous_variant 0.28
rpoC 766003 c.2634G>C synonymous_variant 0.25
rpoC 766009 c.2640G>C synonymous_variant 0.17
rpoC 766012 c.2643C>G synonymous_variant 0.17
rpoC 766021 c.2652G>C synonymous_variant 0.16
rpoC 766309 c.2940G>C synonymous_variant 0.19
rpoC 766312 c.2943T>C synonymous_variant 0.19
rpoC 766315 c.2946C>G synonymous_variant 0.18
rpoC 766321 c.2952C>G synonymous_variant 0.18
rpoC 766333 c.2964G>C synonymous_variant 0.2
rpoC 766345 c.2976T>C synonymous_variant 0.2
rpoC 766348 c.2979A>G synonymous_variant 0.2
rpoC 766357 c.2988C>T synonymous_variant 0.2
rpoC 766363 c.2994G>C synonymous_variant 0.19
rpoC 766369 c.3000C>G synonymous_variant 0.18
rpoC 766375 c.3006C>G synonymous_variant 0.19
rpoC 766381 c.3012C>T synonymous_variant 0.2
rpoC 766384 c.3015A>G synonymous_variant 0.19
rpoC 766390 c.3021C>T synonymous_variant 0.2
rpoC 766408 c.3039C>T synonymous_variant 0.22
rpoC 766435 p.Glu1022Asp missense_variant 0.15
rpoC 766858 c.3489C>T synonymous_variant 0.19
rpoC 766861 c.3492G>C synonymous_variant 0.21
rpoC 766867 c.3498C>G synonymous_variant 0.21
rpoC 766876 c.3507C>T synonymous_variant 0.22
rpoC 766882 c.3513C>T synonymous_variant 0.22
rpoC 766894 c.3525T>C synonymous_variant 0.21
rpoC 766895 c.3526T>C synonymous_variant 0.2
rpoC 766900 c.3531T>C synonymous_variant 0.23
rpoC 766909 c.3540G>C synonymous_variant 0.23
rpoC 766911 p.Ile1181Thr missense_variant 0.24
rpoC 766915 p.Asp1182Glu missense_variant 0.23
rpoC 766918 c.3549C>G synonymous_variant 0.23
rpoC 766919 p.Ala1184Ser missense_variant 0.23
rpoC 766931 p.Ala1188Ser missense_variant 0.25
rpoC 766942 c.3573C>T synonymous_variant 0.28
rpoC 766945 c.3576A>C synonymous_variant 0.27
rpoC 766948 c.3579G>C synonymous_variant 0.28
rpoC 766963 c.3594T>C synonymous_variant 0.34
rpoC 766990 c.3621G>C synonymous_variant 0.29
rpoC 767008 c.3639G>C synonymous_variant 0.23
rpoC 767014 c.3645G>C synonymous_variant 0.2
rpoC 767017 c.3648C>G synonymous_variant 0.17
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781670 c.111G>C synonymous_variant 0.17
rpsL 781679 c.120C>G synonymous_variant 0.17
rpsL 781682 c.123T>C synonymous_variant 0.16
rpsL 781703 c.144G>T synonymous_variant 0.16
rpsL 781706 c.147T>C synonymous_variant 0.16
rpsL 781709 c.150G>T synonymous_variant 0.16
rpsL 781715 c.156T>C synonymous_variant 0.16
rpsL 781724 c.165G>C synonymous_variant 0.16
rpsL 781725 p.Lys56Arg missense_variant 0.16
rpsL 781728 c.169T>C synonymous_variant 0.16
rpsL 781736 c.177T>C synonymous_variant 0.15
rpsL 781737 p.Gln60Ser missense_variant 0.15
rpsL 781751 c.192G>C synonymous_variant 0.25
rpsL 781760 c.201T>C synonymous_variant 0.25
rpsL 781769 c.210G>A synonymous_variant 0.27
rpsL 781781 c.222G>T synonymous_variant 0.39
rpsL 781802 c.243G>C synonymous_variant 0.35
rpsL 781805 c.246G>C synonymous_variant 0.33
rpsL 781808 c.249C>T synonymous_variant 0.35
rpsL 781814 c.255C>T synonymous_variant 0.37
rpsL 781817 c.258G>T synonymous_variant 0.36
rpsL 781829 c.270G>C synonymous_variant 0.39
rpsL 781832 c.273T>G synonymous_variant 0.4
rpsL 781838 c.279G>T synonymous_variant 0.44
rpsL 781853 c.294C>T synonymous_variant 0.41
rpsL 781865 c.306G>C synonymous_variant 0.39
rpsL 781868 c.309T>C synonymous_variant 0.39
rpsL 781871 c.312G>C synonymous_variant 0.39
rpsL 781892 c.333A>G synonymous_variant 0.37
rpsL 781898 c.339A>G synonymous_variant 0.36
rpsL 781901 c.342C>G synonymous_variant 0.36
rpsL 781907 c.348T>C synonymous_variant 0.35
rpsL 781916 c.357T>G synonymous_variant 0.33
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.23
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.23
rrs 1472148 n.303T>C non_coding_transcript_exon_variant 0.36
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.36
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.34
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.28
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.24
rrs 1472396 n.551A>T non_coding_transcript_exon_variant 0.15
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.15
rrs 1472431 n.586G>A non_coding_transcript_exon_variant 0.15
rrs 1472435 n.590T>C non_coding_transcript_exon_variant 0.15
rrs 1472438 n.593T>C non_coding_transcript_exon_variant 0.15
rrs 1472439 n.594C>T non_coding_transcript_exon_variant 0.15
rrs 1472446 n.601T>A non_coding_transcript_exon_variant 0.15
rrs 1472448 n.603T>C non_coding_transcript_exon_variant 0.15
rrs 1472450 n.605A>G non_coding_transcript_exon_variant 0.15
rrs 1472451 n.606C>A non_coding_transcript_exon_variant 0.14
rrs 1472461 n.616G>T non_coding_transcript_exon_variant 0.14
rrs 1472462 n.617T>C non_coding_transcript_exon_variant 0.15
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.15
rrs 1472467 n.622G>C non_coding_transcript_exon_variant 0.14
rrs 1472471 n.626G>A non_coding_transcript_exon_variant 0.15
rrs 1472489 n.644A>T non_coding_transcript_exon_variant 0.22
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.3
rrs 1472612 n.767G>T non_coding_transcript_exon_variant 0.42
rrs 1472682 n.837T>A non_coding_transcript_exon_variant 0.38
rrs 1472683 n.838T>C non_coding_transcript_exon_variant 0.38
rrs 1472857 n.1012A>G non_coding_transcript_exon_variant 1.0
rrs 1473081 n.1236C>G non_coding_transcript_exon_variant 0.35
rrs 1473082 n.1237G>C non_coding_transcript_exon_variant 0.35
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.32
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.34
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.32
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.31
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.3
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.3
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.29
rrs 1473129 n.1284C>G non_coding_transcript_exon_variant 0.3
rrs 1473130 n.1285G>C non_coding_transcript_exon_variant 0.3
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.3
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.29
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.26
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 0.21
rrl 1473756 n.99G>T non_coding_transcript_exon_variant 0.16
rrl 1473757 n.100T>G non_coding_transcript_exon_variant 0.17
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.17
rrl 1473793 n.136G>C non_coding_transcript_exon_variant 0.16
rrl 1473797 n.140G>C non_coding_transcript_exon_variant 0.16
rrl 1473802 n.145C>G non_coding_transcript_exon_variant 0.17
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.16
rrl 1473844 n.187C>A non_coding_transcript_exon_variant 0.17
rrl 1474218 n.561T>A non_coding_transcript_exon_variant 0.18
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.16
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.15
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.17
rrl 1474627 n.970G>A non_coding_transcript_exon_variant 0.17
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.17
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 0.17
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 0.17
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 0.17
rrl 1474639 n.982G>C non_coding_transcript_exon_variant 0.17
rrl 1474674 n.1017A>C non_coding_transcript_exon_variant 0.23
rrl 1474675 n.1018C>A non_coding_transcript_exon_variant 0.23
rrl 1474676 n.1019T>C non_coding_transcript_exon_variant 0.24
rrl 1474709 n.1053_1056delTGGT non_coding_transcript_exon_variant 0.2
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 0.26
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.28
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 0.29
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.3
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.36
rrl 1474803 n.1146G>A non_coding_transcript_exon_variant 0.33
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.33
rrl 1474822 n.1165G>C non_coding_transcript_exon_variant 0.33
rrl 1474824 n.1167A>G non_coding_transcript_exon_variant 0.33
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.32
rrl 1474896 n.1239A>T non_coding_transcript_exon_variant 0.22
rrl 1474901 n.1244A>G non_coding_transcript_exon_variant 0.21
rrl 1474902 n.1245T>C non_coding_transcript_exon_variant 0.21
rrl 1474905 n.1248T>G non_coding_transcript_exon_variant 0.21
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 0.2
rrl 1474932 n.1275C>T non_coding_transcript_exon_variant 0.17
rrl 1475116 n.1459G>A non_coding_transcript_exon_variant 0.13
rrl 1475120 n.1463G>T non_coding_transcript_exon_variant 0.13
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 0.14
rrl 1475688 n.2031G>A non_coding_transcript_exon_variant 0.24
rrl 1475699 n.2042C>T non_coding_transcript_exon_variant 0.24
rrl 1475713 n.2056C>T non_coding_transcript_exon_variant 0.28
rrl 1475753 n.2096C>G non_coding_transcript_exon_variant 0.28
rrl 1475763 n.2106C>T non_coding_transcript_exon_variant 0.28
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.3
rrl 1475883 n.2226A>T non_coding_transcript_exon_variant 0.3
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.3
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 0.34
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 0.36
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.3
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.3
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.3
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 0.26
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.16
rrl 1476160 n.2503T>C non_coding_transcript_exon_variant 0.2
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.26
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.27
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.28
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.29
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.29
rrl 1476221 n.2564T>C non_coding_transcript_exon_variant 0.3
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.31
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.42
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.42
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 0.42
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.43
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.48
rrl 1476297 n.2640C>G non_coding_transcript_exon_variant 0.45
rrl 1476298 n.2641C>G non_coding_transcript_exon_variant 0.44
rrl 1476300 n.2643G>A non_coding_transcript_exon_variant 0.45
rrl 1476309 n.2652G>C non_coding_transcript_exon_variant 0.46
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.48
rrl 1476524 n.2867C>T non_coding_transcript_exon_variant 0.4
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.39
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.39
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.3
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.31
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 0.31
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.3
rrl 1476603 n.2946G>A non_coding_transcript_exon_variant 0.3
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.29
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 0.28
rrl 1476616 n.2959A>G non_coding_transcript_exon_variant 0.28
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.28
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.26
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 0.26
rrl 1476630 n.2973A>G non_coding_transcript_exon_variant 0.27
rrl 1476661 n.3004A>G non_coding_transcript_exon_variant 0.17
rrl 1476666 n.3009C>T non_coding_transcript_exon_variant 0.13
rpsA 1833679 c.138G>C synonymous_variant 0.16
rpsA 1833685 c.144G>T synonymous_variant 0.14
rpsA 1833811 c.270G>C synonymous_variant 0.15
rpsA 1833829 c.288A>G synonymous_variant 0.31
rpsA 1833832 c.291G>A synonymous_variant 0.31
rpsA 1833838 c.297G>C synonymous_variant 0.33
rpsA 1833841 c.300C>G synonymous_variant 0.35
rpsA 1833847 c.306C>G synonymous_variant 0.34
rpsA 1833856 c.315A>G synonymous_variant 0.35
rpsA 1833874 c.333T>C synonymous_variant 0.42
rpsA 1833886 c.345C>G synonymous_variant 0.43
rpsA 1833894 p.Ala118Glu missense_variant 0.46
rpsA 1833928 c.387G>C synonymous_variant 0.56
rpsA 1833940 c.399C>G synonymous_variant 0.56
rpsA 1833952 c.411C>T synonymous_variant 0.54
rpsA 1833955 c.414G>C synonymous_variant 0.54
rpsA 1833961 c.420C>G synonymous_variant 0.54
rpsA 1833970 c.429G>C synonymous_variant 0.49
rpsA 1833973 c.432G>C synonymous_variant 0.49
rpsA 1833979 c.438T>C synonymous_variant 0.5
rpsA 1833985 c.444G>C synonymous_variant 0.53
rpsA 1833988 c.447C>G synonymous_variant 0.56
rpsA 1834000 c.459G>C synonymous_variant 0.58
rpsA 1834009 c.468C>T synonymous_variant 0.55
rpsA 1834012 c.471G>C synonymous_variant 0.54
rpsA 1834024 c.483G>C synonymous_variant 0.54
rpsA 1834030 c.489C>G synonymous_variant 0.5
rpsA 1834054 c.513C>G synonymous_variant 0.44
rpsA 1834069 c.528G>C synonymous_variant 0.43
rpsA 1834093 c.552G>C synonymous_variant 0.32
rpsA 1834099 c.558C>G synonymous_variant 0.28
rpsA 1834102 c.561T>C synonymous_variant 0.22
rpsA 1834105 c.564C>T synonymous_variant 0.22
rpsA 1834108 c.567C>A synonymous_variant 0.23
rpsA 1834114 c.573G>C synonymous_variant 0.22
rpsA 1834219 c.678C>G synonymous_variant 0.14
rpsA 1834222 c.681T>C synonymous_variant 0.14
rpsA 1834225 c.684C>G synonymous_variant 0.14
rpsA 1834231 c.690T>C synonymous_variant 0.15
rpsA 1834234 c.693G>C synonymous_variant 0.16
rpsA 1834240 c.699T>C synonymous_variant 0.19
rpsA 1834243 c.702G>C synonymous_variant 0.21
rpsA 1834249 c.708T>C synonymous_variant 0.33
rpsA 1834261 c.720A>G synonymous_variant 0.39
rpsA 1834264 c.723G>C synonymous_variant 0.39
rpsA 1834279 c.738C>T synonymous_variant 0.45
rpsA 1834298 p.Gln253Thr missense_variant 0.47
rpsA 1834303 c.762T>G synonymous_variant 0.49
rpsA 1834306 c.765T>C synonymous_variant 0.48
rpsA 1834327 c.786G>C synonymous_variant 0.5
rpsA 1834340 p.Met267Leu missense_variant 0.51
rpsA 1834348 c.807T>C synonymous_variant 0.53
rpsA 1834354 c.813G>C synonymous_variant 0.52
rpsA 1834357 c.816T>C synonymous_variant 0.52
rpsA 1834361 c.820T>C synonymous_variant 0.53
rpsA 1834366 c.825A>G synonymous_variant 0.53
rpsA 1834378 c.837T>C synonymous_variant 0.52
rpsA 1834384 c.843A>G synonymous_variant 0.48
rpsA 1834387 c.846C>T synonymous_variant 0.45
rpsA 1834396 c.855G>C synonymous_variant 0.43
rpsA 1834399 p.His286Gln missense_variant 0.4
rpsA 1834408 c.867C>G synonymous_variant 0.38
rpsA 1834411 c.870T>C synonymous_variant 0.37
rpsA 1834417 c.876G>C synonymous_variant 0.33
rpsA 1834423 c.882G>C synonymous_variant 0.34
rpsA 1834435 c.894G>C synonymous_variant 0.28
rpsA 1834451 c.910_912delTTGinsCTC synonymous_variant 0.33
rpsA 1834456 c.915T>C synonymous_variant 0.32
rpsA 1834465 c.924T>C synonymous_variant 0.33
rpsA 1834468 c.927A>G synonymous_variant 0.36
rpsA 1834489 c.948T>C synonymous_variant 0.39
rpsA 1834501 c.960G>C synonymous_variant 0.34
rpsA 1834504 c.963G>C synonymous_variant 0.33
rpsA 1834513 c.972C>G synonymous_variant 0.41
rpsA 1834528 c.987T>C synonymous_variant 0.4
rpsA 1834540 c.999G>C synonymous_variant 0.32
rpsA 1834543 c.1002C>G synonymous_variant 0.3
rpsA 1834546 c.1005T>C synonymous_variant 0.26
rpsA 1834552 c.1011G>C synonymous_variant 0.26
rpsA 1834555 c.1014T>C synonymous_variant 0.26
rpsA 1834556 p.Ala339Ser missense_variant 0.26
rpsA 1834573 c.1032G>C synonymous_variant 0.27
rpsA 1834579 c.1038C>G synonymous_variant 0.22
rpsA 1834580 p.Lys347Arg missense_variant 0.22
rpsA 1834600 c.1059G>C synonymous_variant 0.26
rpsA 1834606 c.1065C>T synonymous_variant 0.27
rpsA 1834612 c.1071G>C synonymous_variant 0.25
rpsA 1834619 c.1078T>C synonymous_variant 0.22
rpsA 1834622 c.1081_1083delTCGinsAGC synonymous_variant 0.22
rpsA 1834633 c.1092A>G synonymous_variant 0.29
rpsA 1834639 c.1098T>C synonymous_variant 0.27
rpsA 1834667 p.Ala376Ser missense_variant 0.26
rpsA 1834690 c.1149T>C synonymous_variant 0.32
rpsA 1834700 p.Gln387Asn missense_variant 0.33
rpsA 1834706 p.Asn389Glu missense_variant 0.33
rpsA 1834733 p.Ala398Pro missense_variant 0.33
rpsA 1834738 c.1197A>G synonymous_variant 0.34
rpsA 1834747 c.1206A>G synonymous_variant 0.34
rpsA 1834753 c.1212T>C synonymous_variant 0.29
rpsA 1834759 c.1218A>C synonymous_variant 0.31
rpsA 1834765 c.1224A>G synonymous_variant 0.3
rpsA 1834776 p.Ala412Glu missense_variant 0.26
rpsA 1834780 c.1239A>G synonymous_variant 0.26
rpsA 1834786 c.1245A>G synonymous_variant 0.26
rpsA 1834788 p.Ala416Gly missense_variant 0.26
rpsA 1834792 c.1251G>C synonymous_variant 0.26
rpsA 1834804 c.1263C>G synonymous_variant 0.29
rpsA 1834810 c.1269C>T synonymous_variant 0.29
rpsA 1834813 c.1272G>C synonymous_variant 0.29
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2154724 p.Arg463Leu missense_variant 1.0
katG 2155674 c.438G>C synonymous_variant 0.22
katG 2155680 c.432G>C synonymous_variant 0.24
katG 2155691 c.421T>C synonymous_variant 0.26
katG 2155696 p.Ala139Val missense_variant 0.27
katG 2155716 c.396T>C synonymous_variant 0.26
katG 2155722 c.390G>C synonymous_variant 0.24
katG 2155728 c.384G>C synonymous_variant 0.21
katG 2155736 p.Met126Leu missense_variant 0.22
katG 2155740 p.Gly124Ala missense_variant 0.2
katG 2155743 c.369G>C synonymous_variant 0.2
katG 2155747 p.Ala122Gly missense_variant 0.2
katG 2155755 c.357C>T synonymous_variant 0.2
katG 2155785 p.Ala109Ser missense_variant 0.19
katG 2155800 c.312G>C synonymous_variant 0.14
PPE35 2167926 p.Leu896Ser missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
pncA 2289365 c.-125delC upstream_gene_variant 1.0
kasA 2517921 c.-194_-193delACinsCT upstream_gene_variant 0.15
ahpC 2726105 c.-88G>A upstream_gene_variant 1.0
thyA 3073800 c.672G>T synonymous_variant 1.0
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
fbiB 3642098 c.564G>A synonymous_variant 1.0
alr 3840636 p.Pro262Gln missense_variant 1.0
rpoA 3877587 p.Ser307Ala missense_variant 0.15
rpoA 3877593 c.915C>T synonymous_variant 0.16
rpoA 3877600 p.Gln303Ala missense_variant 0.18
rpoA 3877613 p.Ile299Val missense_variant 0.28
rpoA 3877617 c.891G>C synonymous_variant 0.29
rpoA 3877629 c.879C>G synonymous_variant 0.3
rpoA 3877656 c.852T>C synonymous_variant 0.34
rpoA 3877659 c.849G>T synonymous_variant 0.35
rpoA 3877662 c.846C>T synonymous_variant 0.36
rpoA 3877668 c.840A>G synonymous_variant 0.37
rpoA 3877677 c.831G>C synonymous_variant 0.41
rpoA 3877683 c.825G>C synonymous_variant 0.4
rpoA 3877686 c.822A>G synonymous_variant 0.4
rpoA 3877704 c.804G>T synonymous_variant 0.44
rpoA 3877728 c.780C>G synonymous_variant 0.41
rpoA 3877731 c.777G>C synonymous_variant 0.41
rpoA 3877743 c.765T>C synonymous_variant 0.45
rpoA 3877746 c.762G>C synonymous_variant 0.46
rpoA 3877752 p.Asp252Glu missense_variant 0.49
rpoA 3877764 p.Ala248Ser missense_variant 0.47
rpoA 3877770 p.Ser246Ala missense_variant 0.45
rpoA 3877776 c.732T>C synonymous_variant 0.45
rpoA 3877782 c.726T>C synonymous_variant 0.45
rpoA 3877803 c.705G>C synonymous_variant 0.46
rpoA 3877818 c.690A>G synonymous_variant 0.46
rpoA 3877836 c.672A>G synonymous_variant 0.45
rpoA 3877842 c.666A>C synonymous_variant 0.4
rpoA 3877845 c.663G>C synonymous_variant 0.41
rpoA 3877848 c.660C>G synonymous_variant 0.41
rpoA 3877856 c.652T>C synonymous_variant 0.41
rpoA 3877866 c.642G>C synonymous_variant 0.46
rpoA 3877875 c.633T>G synonymous_variant 0.46
rpoA 3877893 c.615C>T synonymous_variant 0.43
rpoA 3877898 p.Pro204Ala missense_variant 0.42
rpoA 3877900 p.Ser203Thr missense_variant 0.42
rpoA 3877902 p.Ile202Met missense_variant 0.42
rpoA 3877905 c.603A>G synonymous_variant 0.4
rpoA 3877908 c.600T>C synonymous_variant 0.41
rpoA 3877920 c.588G>C synonymous_variant 0.43
rpoA 3877935 p.Lys191Arg missense_variant 0.41
rpoA 3877938 c.570C>T synonymous_variant 0.41
rpoA 3877962 c.546G>T synonymous_variant 0.47
rpoA 3877971 p.Asp179Glu missense_variant 0.45
rpoA 3877974 c.534G>C synonymous_variant 0.43
rpoA 3877989 c.519A>G synonymous_variant 0.44
rpoA 3877992 c.516C>G synonymous_variant 0.44
rpoA 3877998 c.510G>C synonymous_variant 0.44
rpoA 3878001 c.507A>G synonymous_variant 0.42
rpoA 3878010 c.498C>G synonymous_variant 0.33
rpoA 3878013 c.495T>C synonymous_variant 0.31
rpoA 3878019 c.489A>G synonymous_variant 0.3
rpoA 3878022 c.486T>C synonymous_variant 0.29
rpoA 3878028 c.480G>C synonymous_variant 0.32
rpoA 3878031 c.477T>C synonymous_variant 0.31
rpoA 3878034 c.474A>G synonymous_variant 0.32
rpoA 3878040 c.468T>C synonymous_variant 0.31
rpoA 3878046 c.462T>G synonymous_variant 0.32
rpoA 3878050 p.Arg153Lys missense_variant 0.33
rpoA 3878055 c.453A>G synonymous_variant 0.32
rpoA 3878061 c.447G>C synonymous_variant 0.35
rpoA 3878067 c.441C>G synonymous_variant 0.35
rpoA 3878070 c.438T>C synonymous_variant 0.34
rpoA 3878082 c.426T>G synonymous_variant 0.4
rpoA 3878102 p.Val136Ile missense_variant 0.4
rpoA 3878103 c.405A>G synonymous_variant 0.4
rpoA 3878106 c.402G>C synonymous_variant 0.4
rpoA 3878118 c.390T>C synonymous_variant 0.45
rpoA 3878127 c.381G>C synonymous_variant 0.46
rpoA 3878141 p.Met123Leu missense_variant 0.48
rpoA 3878143 p.Gly122Asp missense_variant 0.48
rpoA 3878154 c.354G>C synonymous_variant 0.45
rpoA 3878161 c.345_346delCG frameshift_variant 0.45
rpoA 3878166 c.341_342insGT frameshift_variant 0.44
rpoA 3878175 c.333G>C synonymous_variant 0.49
rpoA 3878187 c.321C>G synonymous_variant 0.47
rpoA 3878193 c.315T>C synonymous_variant 0.45
rpoA 3878196 p.Glu104Ala missense_variant 0.45
rpoA 3878199 c.309T>C synonymous_variant 0.44
rpoA 3878217 p.Leu97Val missense_variant 0.47
rpoA 3878241 p.Glu89Asp missense_variant 0.43
rpoA 3878250 c.258C>G synonymous_variant 0.41
rpoA 3878253 c.255G>C synonymous_variant 0.41
rpoA 3878256 c.252G>C synonymous_variant 0.41
rpoA 3878264 p.Ser82Gly missense_variant 0.39
rpoA 3878271 c.237T>C synonymous_variant 0.39
rpoA 3878283 p.Glu75Asp missense_variant 0.35
rpoA 3878295 c.213A>G synonymous_variant 0.29
rpoA 3878298 c.210A>G synonymous_variant 0.29
rpoA 3878301 c.207C>G synonymous_variant 0.31
rpoA 3878304 c.204G>C synonymous_variant 0.31
rpoA 3878310 c.198G>C synonymous_variant 0.32
rpoA 3878322 c.186A>G synonymous_variant 0.27
rpoA 3878331 c.177A>G synonymous_variant 0.24
rpoA 3878334 c.174T>C synonymous_variant 0.24
rpoA 3878337 c.171T>C synonymous_variant 0.23
rpoA 3878346 c.162T>C synonymous_variant 0.25
rpoA 3878355 c.153C>G synonymous_variant 0.23
rpoA 3878364 c.144A>C synonymous_variant 0.19
rpoA 3878367 c.141C>G synonymous_variant 0.18
rpoA 3878394 c.114G>C synonymous_variant 0.17
rpoA 3878622 c.-115C>G upstream_gene_variant 1.0
clpC1 4038740 c.1965G>C synonymous_variant 0.19
clpC1 4038755 c.1950G>C synonymous_variant 0.33
clpC1 4038764 c.1941C>G synonymous_variant 0.33
clpC1 4038767 c.1938G>C synonymous_variant 0.34
clpC1 4038773 c.1932T>C synonymous_variant 0.34
clpC1 4038794 p.Ser637Thr missense_variant 0.33
clpC1 4038808 c.1896_1897insC frameshift_variant 0.36
clpC1 4038811 c.1893delT frameshift_variant 0.36
clpC1 4038836 c.1869G>C synonymous_variant 0.4
clpC1 4038845 c.1860G>C synonymous_variant 0.4
clpC1 4038878 c.1827A>G synonymous_variant 0.54
clpC1 4038899 c.1806C>G synonymous_variant 0.43
clpC1 4038905 c.1800A>G synonymous_variant 0.43
clpC1 4038911 c.1794G>T synonymous_variant 0.43
clpC1 4038914 c.1791G>C synonymous_variant 0.43
clpC1 4038917 c.1788C>T synonymous_variant 0.43
clpC1 4038923 c.1782A>G synonymous_variant 0.41
clpC1 4038926 c.1779G>C synonymous_variant 0.43
clpC1 4038932 c.1773G>C synonymous_variant 0.44
clpC1 4038941 c.1764G>C synonymous_variant 0.45
clpC1 4038953 c.1752A>G synonymous_variant 0.43
clpC1 4038956 c.1749T>C synonymous_variant 0.44
clpC1 4038965 c.1740T>C synonymous_variant 0.42
clpC1 4038971 c.1734T>C synonymous_variant 0.4
clpC1 4038974 c.1731T>C synonymous_variant 0.4
clpC1 4038986 p.Asp573Glu missense_variant 0.42
clpC1 4038989 c.1716T>C synonymous_variant 0.4
clpC1 4038997 c.1708T>C synonymous_variant 0.37
clpC1 4039004 c.1701C>G synonymous_variant 0.34
clpC1 4039007 c.1698G>C synonymous_variant 0.32
clpC1 4039016 c.1689C>G synonymous_variant 0.3
clpC1 4039022 c.1683A>G synonymous_variant 0.28
clpC1 4039025 c.1680C>G synonymous_variant 0.3
clpC1 4039034 c.1671C>G synonymous_variant 0.3
clpC1 4039037 c.1668T>C synonymous_variant 0.31
clpC1 4039079 c.1626C>G synonymous_variant 0.33
clpC1 4039085 c.1620A>G synonymous_variant 0.32
clpC1 4039091 c.1614G>C synonymous_variant 0.27
clpC1 4039094 c.1611C>G synonymous_variant 0.27
clpC1 4039097 c.1608G>T synonymous_variant 0.27
clpC1 4039100 c.1605C>G synonymous_variant 0.28
clpC1 4039106 c.1599G>T synonymous_variant 0.3
clpC1 4039112 c.1593C>G synonymous_variant 0.29
clpC1 4039118 c.1587C>G synonymous_variant 0.31
clpC1 4039121 c.1584T>C synonymous_variant 0.32
clpC1 4039124 c.1581C>G synonymous_variant 0.34
clpC1 4039139 c.1566G>A synonymous_variant 0.32
clpC1 4039142 c.1563A>G synonymous_variant 0.33
clpC1 4039145 c.1560G>C synonymous_variant 0.33
clpC1 4039169 p.Glu512Asp missense_variant 0.34
clpC1 4039172 c.1533A>G synonymous_variant 0.33
clpC1 4039178 c.1527G>C synonymous_variant 0.3
clpC1 4039181 c.1522_1524delTTGinsCTC synonymous_variant 0.29
clpC1 4039187 c.1518G>T synonymous_variant 0.28
clpC1 4039199 p.Ala502Glu missense_variant 0.29
clpC1 4039220 c.1485G>C synonymous_variant 0.2
clpC1 4039226 c.1479T>C synonymous_variant 0.19
clpC1 4039244 c.1461G>C synonymous_variant 0.17
clpC1 4039382 p.Ala441Glu missense_variant 0.17
clpC1 4039391 c.1314T>G synonymous_variant 0.23
clpC1 4039406 c.1299G>C synonymous_variant 0.3
clpC1 4039412 c.1293T>G synonymous_variant 0.28
clpC1 4039415 p.Glu430Asp missense_variant 0.28
clpC1 4039427 p.Glu426Asp missense_variant 0.26
clpC1 4039430 c.1275T>C synonymous_variant 0.26
clpC1 4039436 p.Glu423Ala missense_variant 0.27
clpC1 4039442 c.1263A>G synonymous_variant 0.27
clpC1 4039448 c.1257A>G synonymous_variant 0.28
clpC1 4039454 c.1251A>G synonymous_variant 0.25
clpC1 4039463 c.1242C>G synonymous_variant 0.25
clpC1 4039466 c.1239T>C synonymous_variant 0.26
clpC1 4039469 c.1236T>C synonymous_variant 0.3
clpC1 4039472 c.1233G>C synonymous_variant 0.28
clpC1 4039478 c.1227G>C synonymous_variant 0.28
clpC1 4039481 c.1224T>G synonymous_variant 0.28
clpC1 4039484 c.1221T>C synonymous_variant 0.29
clpC1 4039499 c.1206G>C synonymous_variant 0.34
clpC1 4039517 c.1188C>G synonymous_variant 0.27
clpC1 4039526 c.1179G>C synonymous_variant 0.27
clpC1 4039541 c.1164C>G synonymous_variant 0.2
clpC1 4039547 c.1158C>G synonymous_variant 0.19
clpC1 4039556 c.1149G>C synonymous_variant 0.19
clpC1 4039565 c.1140G>C synonymous_variant 0.19
clpC1 4039570 p.Met379Leu missense_variant 0.19
clpC1 4039574 p.Ala377Ser missense_variant 0.18
clpC1 4039577 c.1128T>C synonymous_variant 0.18
clpC1 4039580 c.1125C>G synonymous_variant 0.18
clpC1 4039586 c.1119G>C synonymous_variant 0.17
clpC1 4039589 p.Val372Ile missense_variant 0.17
clpC1 4039592 c.1113G>C synonymous_variant 0.16
clpC1 4039616 c.1089G>C synonymous_variant 0.33
clpC1 4039622 c.1083C>T synonymous_variant 0.34
clpC1 4039642 p.Thr355Ala missense_variant 0.39
clpC1 4039649 c.1056G>C synonymous_variant 0.4
clpC1 4039652 p.Thr351Ser missense_variant 0.4
clpC1 4039661 c.1044T>C synonymous_variant 0.44
clpC1 4039670 c.1035G>C synonymous_variant 0.41
clpC1 4039673 c.1032G>C synonymous_variant 0.42
clpC1 4039724 c.981A>G synonymous_variant 0.5
clpC1 4039733 c.972G>C synonymous_variant 0.52
clpC1 4039739 c.966C>G synonymous_variant 0.55
clpC1 4039748 c.957G>C synonymous_variant 0.51
clpC1 4039751 c.954A>G synonymous_variant 0.51
clpC1 4039757 c.948A>G synonymous_variant 0.5
clpC1 4039760 c.945T>C synonymous_variant 0.49
clpC1 4039766 c.939T>C synonymous_variant 0.49
clpC1 4039769 c.936C>G synonymous_variant 0.5
clpC1 4039778 c.927A>G synonymous_variant 0.51
clpC1 4039781 c.924G>C synonymous_variant 0.51
clpC1 4039790 c.915C>G synonymous_variant 0.5
clpC1 4039817 c.888A>T synonymous_variant 0.46
clpC1 4039820 c.885T>G synonymous_variant 0.45
clpC1 4039829 c.874_876delTTGinsCTC synonymous_variant 0.44
clpC1 4039832 c.873C>G synonymous_variant 0.44
clpC1 4039850 c.855T>C synonymous_variant 0.48
clpC1 4039865 c.840T>C synonymous_variant 0.4
clpC1 4039876 p.Asn277Asp missense_variant 0.39
clpC1 4039889 c.816G>C synonymous_variant 0.34
clpC1 4039896 p.Lys270Arg missense_variant 0.26
clpC1 4039898 c.807C>G synonymous_variant 0.27
clpC1 4039904 c.801A>G synonymous_variant 0.28
clpC1 4039928 c.775_777delAGCinsTCG synonymous_variant 0.22
clpC1 4039931 c.774T>C synonymous_variant 0.21
clpC1 4039934 c.771G>C synonymous_variant 0.22
clpC1 4039943 c.762G>C synonymous_variant 0.24
clpC1 4039946 c.759A>G synonymous_variant 0.23
clpC1 4039949 c.756G>C synonymous_variant 0.24
clpC1 4039952 c.753T>C synonymous_variant 0.24
clpC1 4039958 c.747G>C synonymous_variant 0.29
clpC1 4039994 p.Glu237Asn missense_variant 0.36
clpC1 4040002 p.His235Asn missense_variant 0.36
clpC1 4040003 c.702G>C synonymous_variant 0.37
clpC1 4040009 c.696C>G synonymous_variant 0.39
clpC1 4040018 c.687G>C synonymous_variant 0.4
clpC1 4040021 c.684A>C synonymous_variant 0.4
clpC1 4040024 c.681A>G synonymous_variant 0.44
clpC1 4040033 c.672G>C synonymous_variant 0.4
clpC1 4040036 c.669C>G synonymous_variant 0.38
clpC1 4040090 c.615T>G synonymous_variant 0.37
clpC1 4040107 p.Val200Ile missense_variant 0.29
clpC1 4040108 c.597G>C synonymous_variant 0.28
clpC1 4040117 c.588A>G synonymous_variant 0.27
clpC1 4040123 p.Glu194Asp missense_variant 0.14
clpC1 4040411 c.294T>C synonymous_variant 0.2
clpC1 4040423 c.282A>G synonymous_variant 0.2
clpC1 4040426 c.279T>C synonymous_variant 0.2
clpC1 4040441 c.264C>G synonymous_variant 0.21
clpC1 4040450 c.255A>G synonymous_variant 0.27
clpC1 4040456 c.249C>T synonymous_variant 0.28
clpC1 4040462 c.243C>G synonymous_variant 0.26
clpC1 4040465 c.240T>C synonymous_variant 0.26
clpC1 4040468 c.237G>C synonymous_variant 0.26
clpC1 4040471 c.234T>C synonymous_variant 0.32
clpC1 4040477 c.228G>C synonymous_variant 0.27
clpC1 4040480 c.225T>G synonymous_variant 0.28
clpC1 4040486 c.219G>C synonymous_variant 0.3
clpC1 4040495 c.210C>G synonymous_variant 0.34
clpC1 4040501 c.204C>G synonymous_variant 0.37
clpC1 4040522 c.183T>C synonymous_variant 0.39
clpC1 4040531 c.174T>A synonymous_variant 0.35
clpC1 4040534 c.171A>G synonymous_variant 0.35
clpC1 4040540 c.165G>C synonymous_variant 0.35
clpC1 4040546 c.159G>C synonymous_variant 0.31
clpC1 4040551 c.154T>C synonymous_variant 0.27
clpC1 4040555 c.150G>A synonymous_variant 0.26
clpC1 4040558 c.147G>C synonymous_variant 0.25
clpC1 4040561 p.Ser48Ala missense_variant 0.25
clpC1 4040570 c.135C>G synonymous_variant 0.26
clpC1 4040573 c.132T>G synonymous_variant 0.26
clpC1 4040582 c.123G>T synonymous_variant 0.27
clpC1 4040585 c.120A>G synonymous_variant 0.29
clpC1 4040600 c.103_105delTTAinsCTG synonymous_variant 0.17
clpC1 4040603 c.102T>C synonymous_variant 0.17
clpC1 4040606 c.99T>C synonymous_variant 0.18
clpC1 4040633 c.72C>T synonymous_variant 0.16
embC 4242075 p.Arg738Gln missense_variant 1.0
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4245883 p.Gly884Asp missense_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0