Rv1630 - c.573G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
50 Sensitive
36 RR-TB
28 HR-TB
28 MDR-TB
6 Pre-XDR-TB
0 XDR-TB
43 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2;lineage4 | 1 |
| lineage4.1.1.3 | 6 |
| lineage2.2.1 | 15 |
| lineage3 | 6 |
| lineage2.2;lineage4.9 | 1 |
| lineage4.9 | 73 |
| lineage2.1;lineage4.9 | 1 |
| lineage4.8 | 27 |
| lineage4.3.4.2.1 | 1 |
| La1.2 | 1 |
| lineage1.2.2.2 | 1 |
| lineage4.6.1.2 | 4 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| lineage4.3 | 1 |
| lineage4 | 1 |
| lineage4.1.2 | 1 |
| lineage4.3.4.1 | 3 |
| lineage4.1.1.3;lineage4.9 | 2 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.3.2.1 | 2 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.4.1.2 | 1 |
| lineage3.1.2.1 | 2 |
| 2 | |
| lineage4.2.1 | 2 |
| lineage4.9;lineage6.3 | 1 |
| lineage4.4.1.1.1 | 3 |
| La1.8.1 | 1 |
| lineage4.8.1 | 1 |
| lineage4.1.1.1 | 2 |
| lineage2.2.1;lineage4.9 | 3 |
| lineage2.2.1;lineage4 | 3 |
| La1.7;lineage4.9 | 2 |
| lineage3.1.3 | 1 |
| lineage4.1.2.1;lineage4.4.1 | 1 |
| lineage1;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| lineage4.5 | 1 |
| lineage4.9;lineage9 | 1 |
| lineage2.2.2 | 1 |
| lineage4.3.3;lineage4.9 | 1 |
| lineage4.2.2.2 | 1 |
| lineage4.3.3 | 1 |
| lineage2.2.1.1 | 1 |
| lineage4.1.2.1;lineage4.9 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.9.1 | 1 |
| lineage2;lineage4 | 1 |
| lineage1.1.1 | 1 |
| lineage2;lineage4.9 | 1 |
| lineage4.6.5 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 191 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR16156832 | RR-TB | lineage2.2;lineage4 | None | SRR12708371 | HR-TB | lineage4.1.1.3 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | SRR1049672 | Other | lineage3 | None | ERR4815550 | Other | lineage2.2;lineage4.9 | None | ERR067712 | Sensitive | lineage4.9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | ERR978762 | Other | lineage4.8 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR4769418 | Other | La1.2 | None | SRR1181283 | Sensitive | lineage4.9 | None | ERR2512423 | Other | lineage4.1.1.3 | None | ERR4816470 | HR-TB | lineage3 | None | ERR4769474 | HR-TB | lineage4.9 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | SRR12708392 | Other | lineage2.2.1 | None | ERR978760 | RR-TB | lineage4.8 | None | ERR3283021 | HR-TB | lineage4.9 | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | ERR867542 | HR-TB | lineage4.3 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR6046564 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4 | None | SRR11342682 | Other | lineage4.1.2 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR4819546 | HR-TB | lineage3 | None | ERR176751 | Other | lineage4.9 | None | ERR978746 | RR-TB | lineage4.8 | None | ERR978735 | Other | lineage4.8 | None | SRR1181351 | Sensitive | lineage4.9 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR4815815 | Sensitive | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SAMEA3501046 | RR-TB | lineage4.8 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR10808730 | Other | lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | SRR1175491 | MDR-TB | lineage4.3.4.1 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR867570 | RR-TB | lineage4.9 | None | SRR1175513 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | SRR1175472 | RR-TB | lineage4.3.4.1 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1175052 | HR-TB | lineage4.9 | None | ERR4816762 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | ERR978733 | RR-TB | lineage4.8 | None | SRR1172310 | HR-TB | lineage4.9 | None | ERR978694_ERR978693 | Other | lineage4.8 | None | SRR1180444 | Sensitive | lineage4.9 | None | SAMEA3501015 | Other | lineage4.8 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | ERR978761_ERR978762_ERR978760 | RR-TB | lineage4.8 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | SRR16156775 | Other | lineage4.9 | None | ERR867567 | RR-TB | lineage3 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | ERR4769433 | RR-TB | lineage4.9 | None | ERR978755_ERR978756_ERR978754_ERR978757 | RR-TB | lineage4.8 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | ERR400345 | Other | lineage4.9 | None | ERR2513382 | RR-TB | lineage4.1.1.3 | None | SRR1180420 | Sensitive | lineage4.9 | None | ERR4800102 | Sensitive | lineage3.1.2.1 | None | ERR4816852 | Other | lineage4.9 | None | ERR978693 | Other | lineage4.8 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR6358991 | HR-TB | None | ERR867525 | Pre-XDR-TB | lineage2.2.1 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | SRR11462861 | Other | La1.8.1 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | SRR3675387 | Other | lineage4.9 | None | ERR4769493 | Other | lineage4.9 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | ERR978734_ERR978733_ERR978735 | RR-TB | lineage4.8 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR978726_ERR978727 | RR-TB | lineage4.8 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | ERR11252664 | Other | lineage2.2.1 | None | SRR20632814 | Sensitive | lineage4.9 | None | ERR978757 | RR-TB | lineage4.8 | None | SRR28351408 | Pre-XDR-TB | lineage2.2.1;lineage4 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180226 | HR-TB | lineage4.9 | None | SRR1181256 | Other | lineage4.9 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | ERR978750 | RR-TB | lineage4.8 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | SRR6045359 | Sensitive | lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR4811031 | Sensitive | lineage4.5 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | SRR1181403 | Other | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | SRR1180345 | Other | lineage4.9 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | ERR978726 | RR-TB | lineage4.8 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | ERR978752 | Other | lineage4.8 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | SRR3675455 | Sensitive | lineage4.9 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | ERR978750_ERR978752_ERR978751 | RR-TB | lineage4.8 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR4818561 | Sensitive | lineage4.9 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR11662694 | Other | lineage4.9 | None | ERR4596902 | MDR-TB | lineage3 | None | ERR11465665 | Other | lineage4.1.1.3 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | ERR4814639 | HR-TB | lineage4.9 | None | SRR11342636 | MDR-TB | lineage4.3.3;lineage4.9 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR18909918 | Other | lineage2.2.1.1 | None | ERR4812155 | Other | lineage4.9 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR1180446 | Other | lineage4.9 | None | SRR9971122 | MDR-TB | lineage4.8 | None | SRR1180399 | Sensitive | lineage4.9 | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | SRR1062928 | Other | lineage4.1.2.1;lineage4.9 | None | ERR4819383 | RR-TB | lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR11465189 | RR-TB | lineage4.9.1 | None | SRR1180413 | Sensitive | lineage4.9 | None | ERR1023502 | MDR-TB | lineage2;lineage4 | None | SRR29017081 | Sensitive | lineage4.9 | None | ERR978754 | RR-TB | lineage4.8 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | ERR4815310 | Other | lineage2.2.1;lineage4.9 | None | ERR3283042 | Other | lineage4.9 | None | ERR4816322 | Other | lineage4.9 | None | ERR4819314 | Other | lineage1.1.1 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | ERR978746_ERR978747_ERR978748 | RR-TB | lineage4.8 | None | ERR10796565 | Other | lineage4.9 | None | SRR1180440 | Other | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | ERR4798823 | HR-TB | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR7801175 | HR-TB | lineage4.6.5 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None |
|---|
