TB-Profiler result

Run: ERR10796565
Summary

Run ID: ERR10796565

Sample name:

Date: 31-03-2023 11:11:37

Number of reads: 257928

Percentage reads mapped: 99.98

Strain: lineage4.9

Drug-resistance: RR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761127 p.Ser441Ala missense_variant 1.0 rifampicin
rpoB 761139 p.His445Asn missense_variant 1.0 rifampicin
rrs 1472733 n.888G>A non_coding_transcript_exon_variant 0.58 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rpoB 761037 c.1231_1233delTTGinsCTC synonymous_variant 1.0
rpoB 761058 p.Val418Thr missense_variant 1.0
rpoB 761088 c.1282_1283delAGinsTC synonymous_variant 1.0
rpoB 761102 c.1296A>G synonymous_variant 1.0
rpoB 761132 c.1326G>T synonymous_variant 1.0
rpoB 761133 c.1327T>C synonymous_variant 1.0
rpoB 761154 c.1348_1350delTCGinsAGC synonymous_variant 1.0
rpoB 761159 c.1353G>C synonymous_variant 1.0
rpoB 761165 c.1359G>C synonymous_variant 1.0
rpoC 762854 c.-516G>C upstream_gene_variant 1.0
rpoB 762855 p.Val1017Ile missense_variant 1.0
rpoB 762858 p.Thr1018Ser missense_variant 1.0
rpoC 762863 c.-507T>G upstream_gene_variant 1.0
rpoB 762879 p.Met1025Leu missense_variant 1.0
rpoC 762887 c.-483G>C upstream_gene_variant 1.0
rpoC 762896 c.-474G>C upstream_gene_variant 0.5
rpoC 762926 c.-444C>G upstream_gene_variant 0.75
rpoC 762929 c.-441G>T upstream_gene_variant 1.0
rpoC 762932 c.-438G>C upstream_gene_variant 0.67
rpoC 762938 c.-432G>C upstream_gene_variant 0.75
rpoC 762947 c.-423C>G upstream_gene_variant 0.75
rpoC 762962 c.-408C>T upstream_gene_variant 0.75
rpoC 762971 c.-399G>C upstream_gene_variant 1.0
rpoC 762983 c.-387C>T upstream_gene_variant 0.86
rpoC 762989 c.-381G>C upstream_gene_variant 1.0
rpoC 762995 c.-375G>C upstream_gene_variant 1.0
rpoB 763005 p.Cys1067Gly missense_variant 1.0
rpoC 763462 c.93G>C synonymous_variant 1.0
rpoC 763468 c.99G>C synonymous_variant 1.0
rpoC 763483 c.114G>C synonymous_variant 1.0
rpoC 763486 c.117T>C synonymous_variant 1.0
rpoC 763492 c.123G>C synonymous_variant 1.0
rpoC 763528 c.159G>C synonymous_variant 1.0
rpoC 763531 c.162G>C synonymous_variant 1.0
rpoC 763534 c.165T>C synonymous_variant 1.0
rpoC 763537 c.168C>G synonymous_variant 1.0
rpoC 763546 c.177A>G synonymous_variant 1.0
rpoC 763550 p.Tyr61Ala missense_variant 1.0
rpoC 763558 c.189C>T synonymous_variant 1.0
rpoC 763570 c.201G>C synonymous_variant 1.0
rpoC 763578 p.Phe70Tyr missense_variant 1.0
rpoC 763589 p.Ile74Val missense_variant 1.0
rpoC 763606 c.237C>G synonymous_variant 1.0
rpoC 763615 c.246G>C synonymous_variant 1.0
rpoC 763618 c.249C>T synonymous_variant 1.0
rpoC 763622 p.Ala85Ser missense_variant 1.0
rpoC 763636 c.267T>C synonymous_variant 1.0
rpoC 764602 c.1233C>T synonymous_variant 1.0
rpoC 764605 c.1236G>T synonymous_variant 1.0
rpoC 764611 c.1242G>T synonymous_variant 1.0
rpoC 764632 c.1263T>C synonymous_variant 1.0
rpoC 764647 c.1278C>T synonymous_variant 1.0
rpoC 764650 c.1281G>T synonymous_variant 1.0
rpoC 764653 c.1284G>C synonymous_variant 1.0
rpoC 764656 c.1287C>T synonymous_variant 0.75
rpoC 764662 c.1293G>C synonymous_variant 1.0
rpoC 764671 c.1302G>C synonymous_variant 0.4
rpoC 764677 c.1308C>G synonymous_variant 0.6
rpoC 764678 p.Lys437Gln missense_variant 0.6
rpoC 764695 c.1326T>C synonymous_variant 0.4
rpoC 764703 p.Lys445Ser missense_variant 0.4
rpoC 764706 p.Leu446Gln missense_variant 1.0
rpoC 764713 c.1344G>C synonymous_variant 1.0
rpoC 764731 c.1362G>C synonymous_variant 1.0
rpoC 764737 c.1368G>C synonymous_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471853 n.8T>C non_coding_transcript_exon_variant 0.5
rrs 1471896 n.51T>C non_coding_transcript_exon_variant 0.68
rrs 1471900 n.55C>T non_coding_transcript_exon_variant 0.68
rrs 1471911 n.66C>A non_coding_transcript_exon_variant 0.77
rrs 1472068 n.223T>G non_coding_transcript_exon_variant 1.0
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 1.0
rrs 1472078 n.233C>T non_coding_transcript_exon_variant 1.0
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.93
rrs 1472122 n.277G>T non_coding_transcript_exon_variant 0.62
rrs 1472123 n.278A>T non_coding_transcript_exon_variant 0.77
rrs 1472124 n.279C>T non_coding_transcript_exon_variant 0.88
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 1.0
rrs 1472150 n.305T>G non_coding_transcript_exon_variant 1.0
rrs 1472151 n.306C>A non_coding_transcript_exon_variant 0.45
rrs 1472155 n.310C>T non_coding_transcript_exon_variant 0.83
rrs 1472160 n.315C>T non_coding_transcript_exon_variant 0.45
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.38
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.35
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 1.0
rrs 1472258 n.413A>G non_coding_transcript_exon_variant 0.37
rrs 1472259 n.414C>A non_coding_transcript_exon_variant 0.73
rrs 1472285 n.440A>G non_coding_transcript_exon_variant 0.88
rrs 1472325 n.480G>C non_coding_transcript_exon_variant 1.0
rrs 1472330 n.485G>T non_coding_transcript_exon_variant 0.89
rrs 1472338 n.493A>G non_coding_transcript_exon_variant 1.0
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 1.0
rrs 1472379 n.534T>C non_coding_transcript_exon_variant 1.0
rrs 1472382 n.537G>A non_coding_transcript_exon_variant 0.29
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 1.0
rrs 1472412 n.567A>G non_coding_transcript_exon_variant 0.33
rrs 1472416 n.571C>T non_coding_transcript_exon_variant 0.43
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 1.0
rrs 1472484 n.639A>T non_coding_transcript_exon_variant 0.36
rrs 1472489 n.644A>T non_coding_transcript_exon_variant 0.44
rrs 1472494 n.649A>G non_coding_transcript_exon_variant 0.76
rrs 1472496 n.651T>A non_coding_transcript_exon_variant 1.0
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 1.0
rrs 1472513 n.668T>C non_coding_transcript_exon_variant 0.67
rrs 1472518 n.673G>T non_coding_transcript_exon_variant 0.26
rrs 1472544 n.699C>A non_coding_transcript_exon_variant 0.3
rrs 1472545 n.700A>T non_coding_transcript_exon_variant 0.3
rrs 1472549 n.704G>A non_coding_transcript_exon_variant 0.63
rrs 1472566 n.721G>A non_coding_transcript_exon_variant 0.32
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.33
rrs 1472581 n.736A>C non_coding_transcript_exon_variant 1.0
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 1.0
rrs 1472584 n.739A>T non_coding_transcript_exon_variant 0.61
rrs 1472598 n.753A>C non_coding_transcript_exon_variant 0.35
rrs 1472599 n.754G>T non_coding_transcript_exon_variant 0.35
rrs 1472647 n.802C>T non_coding_transcript_exon_variant 0.41
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 0.99
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.76
rrs 1472690 n.845C>T non_coding_transcript_exon_variant 0.57
rrs 1472692 n.847T>C non_coding_transcript_exon_variant 0.63
rrs 1472707 n.862A>T non_coding_transcript_exon_variant 0.27
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.43
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.55
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.48
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 0.6
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.61
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 0.73
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.26
rrs 1472793 n.948A>T non_coding_transcript_exon_variant 0.74
rrs 1472803 n.958T>A non_coding_transcript_exon_variant 0.74
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 0.98
rrs 1472825 n.980G>A non_coding_transcript_exon_variant 0.48
rrs 1472827 n.982G>T non_coding_transcript_exon_variant 0.39
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 0.99
rrs 1472840 n.995A>G non_coding_transcript_exon_variant 1.0
rrs 1472875 n.1030T>C non_coding_transcript_exon_variant 0.8
rrs 1472880 n.1035G>A non_coding_transcript_exon_variant 0.35
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.98
rrs 1472954 n.1109T>C non_coding_transcript_exon_variant 0.37
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.73
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.47
rrs 1472958 n.1113A>G non_coding_transcript_exon_variant 0.53
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.79
rrs 1472974 n.1129A>G non_coding_transcript_exon_variant 0.53
rrs 1472988 n.1143T>C non_coding_transcript_exon_variant 0.55
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.99
rrs 1472992 n.1147A>G non_coding_transcript_exon_variant 0.35
rrs 1473005 n.1160C>T non_coding_transcript_exon_variant 0.34
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 1.0
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.99
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 1.0
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.99
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.99
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 0.35
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.99
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 1.0
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 1.0
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 1.0
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.96
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.86
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.45
rrs 1473148 n.1303G>T non_coding_transcript_exon_variant 0.64
rrs 1473163 n.1318C>A non_coding_transcript_exon_variant 0.64
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.46
rrs 1473172 n.1327T>G non_coding_transcript_exon_variant 0.33
rrs 1473173 n.1328C>T non_coding_transcript_exon_variant 0.83
rrs 1473221 n.1376C>T non_coding_transcript_exon_variant 0.81
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.68
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.69
rrs 1473262 n.1417T>C non_coding_transcript_exon_variant 0.37
rrs 1473276 n.1431A>C non_coding_transcript_exon_variant 1.0
rrs 1473277 n.1432G>A non_coding_transcript_exon_variant 0.49
rrs 1473301 n.1456T>G non_coding_transcript_exon_variant 1.0
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 0.99
rrl 1473384 n.-274A>G upstream_gene_variant 0.67
rrl 1474155 n.498G>A non_coding_transcript_exon_variant 1.0
rrl 1474163 n.506C>T non_coding_transcript_exon_variant 0.33
rrl 1474164 n.507C>T non_coding_transcript_exon_variant 1.0
rrl 1474171 n.514C>T non_coding_transcript_exon_variant 0.54
rrl 1474181 n.524C>A non_coding_transcript_exon_variant 1.0
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 1.0
rrl 1474185 n.528G>A non_coding_transcript_exon_variant 0.44
rrl 1474197 n.540C>T non_coding_transcript_exon_variant 0.91
rrl 1474199 n.542G>C non_coding_transcript_exon_variant 0.79
rrl 1474200 n.545delT non_coding_transcript_exon_variant 1.0
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.96
rrl 1474271 n.614A>G non_coding_transcript_exon_variant 0.71
rrl 1474272 n.615C>T non_coding_transcript_exon_variant 0.71
rrl 1474275 n.618T>G non_coding_transcript_exon_variant 1.0
rrl 1474351 n.694G>T non_coding_transcript_exon_variant 1.0
rrl 1474353 n.696A>G non_coding_transcript_exon_variant 1.0
rrl 1474355 n.698A>G non_coding_transcript_exon_variant 1.0
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 1.0
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 1.0
rrl 1474393 n.736A>G non_coding_transcript_exon_variant 1.0
rrl 1474402 n.745T>C non_coding_transcript_exon_variant 1.0
rrl 1474406 n.749T>C non_coding_transcript_exon_variant 1.0
rrl 1474448 n.791T>C non_coding_transcript_exon_variant 0.79
rrl 1474454 n.797G>A non_coding_transcript_exon_variant 0.63
rrl 1474467 n.810A>G non_coding_transcript_exon_variant 0.96
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 0.99
rrl 1474495 n.838G>A non_coding_transcript_exon_variant 0.92
rrl 1474498 n.841G>T non_coding_transcript_exon_variant 0.71
rrl 1474505 n.848C>G non_coding_transcript_exon_variant 0.71
rrl 1474508 n.851C>T non_coding_transcript_exon_variant 0.91
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 0.99
rrl 1474527 n.870T>C non_coding_transcript_exon_variant 0.73
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.99
rrl 1474542 n.885A>G non_coding_transcript_exon_variant 0.79
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.54
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.39
rrl 1474634 n.977T>C non_coding_transcript_exon_variant 0.57
rrl 1474634 n.977T>G non_coding_transcript_exon_variant 0.55
rrl 1474636 n.979A>C non_coding_transcript_exon_variant 1.0
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 0.55
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 1.0
rrl 1474640 n.983C>T non_coding_transcript_exon_variant 0.39
rrl 1474658 n.1001A>G non_coding_transcript_exon_variant 0.32
rrl 1474663 n.1006C>T non_coding_transcript_exon_variant 0.59
rrl 1474677 n.1020A>G non_coding_transcript_exon_variant 1.0
rrl 1474692 n.1035G>A non_coding_transcript_exon_variant 0.49
rrl 1474709 n.1052G>A non_coding_transcript_exon_variant 0.43
rrl 1474734 n.1077G>C non_coding_transcript_exon_variant 1.0
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 1.0
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.31
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 1.0
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 1.0
rrl 1474779 n.1122G>A non_coding_transcript_exon_variant 0.28
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 1.0
rrl 1474802 n.1145T>C non_coding_transcript_exon_variant 0.25
rrl 1474824 n.1167A>G non_coding_transcript_exon_variant 0.74
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 1.0
rrl 1474831 n.1174A>C non_coding_transcript_exon_variant 1.0
rrl 1474831 n.1174A>T non_coding_transcript_exon_variant 1.0
rrl 1474832 n.1175A>T non_coding_transcript_exon_variant 0.58
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 1.0
rrl 1474903 n.1246T>C non_coding_transcript_exon_variant 0.79
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 0.99
rrl 1474951 n.1294C>A non_coding_transcript_exon_variant 0.43
rrl 1475026 n.1369G>C non_coding_transcript_exon_variant 1.0
rrl 1475031 n.1374G>C non_coding_transcript_exon_variant 1.0
rrl 1475059 n.1403_1404insTA non_coding_transcript_exon_variant 1.0
rrl 1475062 n.1405A>T non_coding_transcript_exon_variant 1.0
rrl 1475065 n.1409_1411delCAA non_coding_transcript_exon_variant 1.0
rrl 1475080 n.1425_1426delCC non_coding_transcript_exon_variant 1.0
rrl 1475090 n.1433A>T non_coding_transcript_exon_variant 1.0
rrl 1475104 n.1447T>A non_coding_transcript_exon_variant 0.97
rrl 1475114 n.1457C>T non_coding_transcript_exon_variant 1.0
rrl 1475124 n.1467A>T non_coding_transcript_exon_variant 0.98
rrl 1475171 n.1514C>T non_coding_transcript_exon_variant 0.8
rrl 1475172 n.1515A>G non_coding_transcript_exon_variant 0.64
rrl 1475175 n.1518G>C non_coding_transcript_exon_variant 0.36
rrl 1475499 n.1842C>T non_coding_transcript_exon_variant 1.0
rrl 1475518 n.1861A>G non_coding_transcript_exon_variant 1.0
rrl 1475521 n.1864T>C non_coding_transcript_exon_variant 1.0
rrl 1475526 n.1869C>T non_coding_transcript_exon_variant 1.0
rrl 1475529 n.1872A>G non_coding_transcript_exon_variant 1.0
rrl 1475532 n.1875A>T non_coding_transcript_exon_variant 1.0
rrl 1475538 n.1881T>C non_coding_transcript_exon_variant 1.0
rrl 1475544 n.1887A>T non_coding_transcript_exon_variant 0.44
rrl 1475545 n.1888T>G non_coding_transcript_exon_variant 0.44
rrl 1475548 n.1891C>T non_coding_transcript_exon_variant 1.0
rrl 1475549 n.1892T>C non_coding_transcript_exon_variant 1.0
rrl 1475649 n.1992A>G non_coding_transcript_exon_variant 1.0
rrl 1475655 n.1998T>G non_coding_transcript_exon_variant 1.0
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 1.0
rrl 1475686 n.2029C>G non_coding_transcript_exon_variant 0.52
rrl 1475696 n.2039T>C non_coding_transcript_exon_variant 0.87
rrl 1475699 n.2042C>T non_coding_transcript_exon_variant 1.0
rrl 1475703 n.2046A>G non_coding_transcript_exon_variant 0.88
rrl 1475715 n.2058G>C non_coding_transcript_exon_variant 0.39
rrl 1475751 n.2094C>A non_coding_transcript_exon_variant 1.0
rrl 1475754 n.2097G>A non_coding_transcript_exon_variant 0.4
rrl 1475774 n.2117C>T non_coding_transcript_exon_variant 0.51
rrl 1475777 n.2120A>T non_coding_transcript_exon_variant 0.92
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.45
rrl 1475883 n.2226A>C non_coding_transcript_exon_variant 1.0
rrl 1475883 n.2226A>T non_coding_transcript_exon_variant 1.0
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.61
rrl 1475898 n.2241A>G non_coding_transcript_exon_variant 1.0
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 1.0
rrl 1475900 n.2243A>G non_coding_transcript_exon_variant 0.38
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 1.0
rrl 1475916 n.2259C>T non_coding_transcript_exon_variant 0.99
rrl 1475937 n.2280A>T non_coding_transcript_exon_variant 0.62
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 1.0
rrl 1475945 n.2288C>A non_coding_transcript_exon_variant 0.95
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 0.99
rrl 1475970 n.2313C>T non_coding_transcript_exon_variant 1.0
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.54
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 1.0
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 1.0
rrl 1475991 n.2334T>C non_coding_transcript_exon_variant 0.4
rrl 1475992 n.2335T>G non_coding_transcript_exon_variant 0.43
rrl 1475995 n.2338G>T non_coding_transcript_exon_variant 0.75
rrl 1475998 n.2341C>T non_coding_transcript_exon_variant 1.0
rrl 1475999 n.2342G>A non_coding_transcript_exon_variant 0.86
rrl 1476001 n.2344T>C non_coding_transcript_exon_variant 1.0
rrl 1476110 n.2453G>C non_coding_transcript_exon_variant 0.93
rrl 1476113 n.2456T>G non_coding_transcript_exon_variant 1.0
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.91
rrl 1476164 n.2507A>G non_coding_transcript_exon_variant 0.58
rrl 1476179 n.2522C>T non_coding_transcript_exon_variant 0.79
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 1.0
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 1.0
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.44
rrl 1476204 n.2547C>T non_coding_transcript_exon_variant 0.79
rrl 1476207 n.2550T>C non_coding_transcript_exon_variant 0.56
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.69
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.7
rrl 1476221 n.2564T>C non_coding_transcript_exon_variant 0.64
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.98
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.57
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.87
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 0.86
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 1.0
rrl 1476267 n.2610G>T non_coding_transcript_exon_variant 0.5
rrl 1476276 n.2619C>A non_coding_transcript_exon_variant 0.4
rrl 1476279 n.2622G>A non_coding_transcript_exon_variant 0.4
rrl 1476280 n.2623A>C non_coding_transcript_exon_variant 0.29
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.71
rrl 1476294 n.2637A>G non_coding_transcript_exon_variant 0.89
rrl 1476295 n.2638C>G non_coding_transcript_exon_variant 0.8
rrl 1476296 n.2639C>T non_coding_transcript_exon_variant 0.78
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 0.5
rrl 1476301 n.2644A>T non_coding_transcript_exon_variant 0.42
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 0.6
rrl 1476332 n.2675G>C non_coding_transcript_exon_variant 0.78
rrl 1476338 n.2681C>T non_coding_transcript_exon_variant 0.74
rrl 1476353 n.2696G>T non_coding_transcript_exon_variant 0.78
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 0.82
rrl 1476369 n.2712C>T non_coding_transcript_exon_variant 0.8
rrl 1476372 n.2715T>C non_coding_transcript_exon_variant 0.8
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 0.82
rrl 1476383 n.2726T>A non_coding_transcript_exon_variant 0.84
rrl 1476425 n.2768G>T non_coding_transcript_exon_variant 0.78
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.9
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.82
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.86
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.98
rrl 1476513 n.2856G>T non_coding_transcript_exon_variant 0.35
rrl 1476514 n.2857C>T non_coding_transcript_exon_variant 0.61
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 0.4
rrl 1476519 n.2862C>G non_coding_transcript_exon_variant 0.55
rrl 1476523 n.2866T>C non_coding_transcript_exon_variant 0.36
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 0.99
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.98
rrl 1476528 n.2871A>G non_coding_transcript_exon_variant 0.33
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.45
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.93
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.93
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.88
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.41
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.98
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.98
rrl 1476600 n.2943A>C non_coding_transcript_exon_variant 0.84
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.95
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 1.0
rrl 1476616 n.2959A>G non_coding_transcript_exon_variant 1.0
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.89
rrl 1476628 n.2971T>G non_coding_transcript_exon_variant 1.0
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 1.0
rrl 1476633 n.2976A>G non_coding_transcript_exon_variant 1.0
rrl 1476664 n.3007T>A non_coding_transcript_exon_variant 1.0
rrl 1476668 n.3011C>T non_coding_transcript_exon_variant 1.0
rpsA 1833688 c.147C>T synonymous_variant 1.0
rpsA 1833694 c.153G>C synonymous_variant 1.0
rpsA 1833700 c.159C>T synonymous_variant 1.0
rpsA 1833703 c.162C>T synonymous_variant 1.0
rpsA 1833727 c.186G>C synonymous_variant 1.0
rpsA 1833732 p.Pro64Leu missense_variant 1.0
rpsA 1833736 c.195C>T synonymous_variant 1.0
rpsA 1833742 c.201A>G synonymous_variant 1.0
rpsA 1833770 p.Asn77Asp missense_variant 1.0
rpsA 1833776 p.Val79Ile missense_variant 1.0
rpsA 1833781 c.240T>C synonymous_variant 1.0
rpsA 1833790 c.249T>C synonymous_variant 1.0
rpsA 1833970 c.429G>C synonymous_variant 1.0
rpsA 1833979 c.438T>C synonymous_variant 1.0
rpsA 1833985 c.444G>T synonymous_variant 1.0
rpsA 1833994 c.453G>C synonymous_variant 1.0
rpsA 1834009 c.468C>T synonymous_variant 1.0
rpsA 1834012 c.471G>C synonymous_variant 1.0
rpsA 1834024 c.483G>T synonymous_variant 1.0
rpsA 1834034 p.Ile165Val missense_variant 1.0
rpsA 1834040 p.Lys167Arg missense_variant 1.0
rpsA 1834046 p.Ile169Leu missense_variant 1.0
rpsA 1834054 c.513C>G synonymous_variant 0.95
rpsA 1834093 c.552G>C synonymous_variant 1.0
rpsA 1834096 c.555G>C synonymous_variant 1.0
rpsA 1834102 c.561T>C synonymous_variant 0.93
rpsA 1834114 c.573G>C synonymous_variant 0.8
rpsA 1834129 c.588C>G synonymous_variant 0.5
rpsA 1834189 c.648G>T synonymous_variant 1.0
rpsA 1834195 c.654G>C synonymous_variant 1.0
rpsA 1834228 c.687C>T synonymous_variant 1.0
rpsA 1834234 c.693G>C synonymous_variant 1.0
rpsA 1834240 c.699T>C synonymous_variant 1.0
rpsA 1834246 c.705G>T synonymous_variant 1.0
rpsA 1834249 c.708T>C synonymous_variant 1.0
rpsA 1834261 c.720A>G synonymous_variant 1.0
rpsA 1834264 c.723G>C synonymous_variant 1.0
rpsA 1834294 c.753G>C synonymous_variant 1.0
rpsA 1834298 p.Gln253Glu missense_variant 1.0
rpsA 1834306 c.765T>C synonymous_variant 1.0
rpsA 1834307 p.Asp256Gln missense_variant 1.0
rpsA 1834312 c.771G>A synonymous_variant 1.0
rpsA 1834327 c.786G>T synonymous_variant 1.0
embA 4244220 c.988C>T synonymous_variant 1.0