Rv0668 - c.-474G>C
Drug resistance types
19 Sensitive
32 RR-TB
65 HR-TB
35 MDR-TB
48 Pre-XDR-TB
0 XDR-TB
31 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2 | 25 |
| lineage2.2.1 | 35 |
| lineage2.2.2 | 20 |
| lineage3.1.1 | 2 |
| lineage4.1.1.3 | 4 |
| lineage4.4.2 | 4 |
| lineage3 | 18 |
| 22 | |
| lineage2.2.1.1 | 2 |
| lineage4 | 14 |
| lineage4.9 | 40 |
| lineage4;lineage2.2.2 | 1 |
| lineage2.2.2;lineage2.2.1 | 2 |
| lineage4.5 | 3 |
| lineage4.9;lineage2 | 1 |
| lineage4.3.4.2.1 | 5 |
| lineage4.1.2.1 | 4 |
| lineage4.4.1.1;lineage4.1.2.1 | 1 |
| La1.6 | 1 |
| lineage4.8 | 3 |
| lineage4.4.1.2 | 1 |
| lineage4.4.1.1 | 3 |
| La1.8.1 | 2 |
| lineage4.3.3 | 5 |
| lineage4.6.2.2 | 2 |
| lineage4.3.4.2 | 1 |
| lineage4.8.2 | 1 |
| lineage4.1.1.3.1 | 2 |
| lineage4.3.4.1 | 2 |
| lineage1.1.3.1 | 1 |
| lineage4.9;lineage4.2.1 | 1 |
| lineage5.1.1 | 1 |
| lineage4.3.4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 230 |
Geographic prevalence
Country level data for this variant is available for 4 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1013568 | Pre-XDR-TB | lineage2.2 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | SRR1013553 | Pre-XDR-TB | lineage2.2 | None | SRR1013567 | Pre-XDR-TB | lineage2.2.2 | None | SRR1013569 | Pre-XDR-TB | lineage2.2.1 | None | ERR9117740 | Other | lineage3.1.1 | None | ERR9786164 | RR-TB | lineage4.1.1.3 | None | SRR1013554 | Pre-XDR-TB | lineage2.2 | None | SRR1013566 | Pre-XDR-TB | lineage4.4.2 | None | SRR1013578 | MDR-TB | lineage2.2 | None | SRR1013570 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013583 | HR-TB | lineage2.2 | None | SRR1013581 | Pre-XDR-TB | lineage2.2 | None | SRR1013577 | MDR-TB | lineage2.2 | None | SRR1013590 | HR-TB | lineage2.2.1 | None | SRR1013584 | HR-TB | lineage2.2 | None | SRR1013582 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013589 | HR-TB | lineage2.2.1 | None | SRR1013597 | HR-TB | lineage2.2 | None | SRR1013595 | HR-TB | lineage3 | None | SRR1013596 | HR-TB | lineage3 | None | SRR1013607 | HR-TB | lineage2.2 | None | SRR1013598 | HR-TB | None | SRR1013600 | HR-TB | lineage2.2.1.1 | None | SRR1013599 | HR-TB | None | SRR1013601 | HR-TB | lineage2.2.1 | None | SRR1013602 | HR-TB | lineage2.2.1 | None | SRR1013604 | HR-TB | lineage2.2.1 | None | SRR1013603 | HR-TB | lineage2.2.1 | None | SRR1013609 | HR-TB | lineage4 | None | SRR1013608 | HR-TB | lineage2.2 | None | SRR1013614 | HR-TB | lineage2.2 | None | SRR1013610 | HR-TB | lineage4 | None | SRR1013621 | Pre-XDR-TB | lineage2.2 | None | SRR1013611 | HR-TB | lineage4 | None | SRR1013617 | MDR-TB | None | SRR1013613 | HR-TB | lineage2.2.1 | None | SRR1013618 | MDR-TB | None | SRR1013630 | Pre-XDR-TB | lineage2.2 | None | SRR1013622 | Pre-XDR-TB | lineage2.2 | None | SRR1013633 | MDR-TB | lineage2.2 | None | SRR1013629 | Pre-XDR-TB | lineage2.2 | None | SRR1013634 | MDR-TB | lineage2.2 | None | SRR1048867 | Pre-XDR-TB | lineage2.2.2 | None | SRR1047993 | HR-TB | lineage2.2.1 | None | SRR1048852 | Pre-XDR-TB | lineage4.9 | None | SRR1048865 | Pre-XDR-TB | lineage4.4.2 | None | SRR1047996 | MDR-TB | lineage2.2.2 | None | SRR1048853 | Pre-XDR-TB | lineage4;lineage2.2.2 | None | SRR1048866 | Pre-XDR-TB | lineage4.4.2 | None | SRR1048870 | Pre-XDR-TB | lineage2.2 | None | SRR1048868 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048869 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048965 | Pre-XDR-TB | lineage2.2.1 | None | SRR1048885 | MDR-TB | None | SRR1048886 | MDR-TB | lineage2.2 | None | SRR1048969 | MDR-TB | lineage2.2.2 | None | SRR1048968 | HR-TB | lineage2.2.2;lineage2.2.1 | None | SRR1048966 | Pre-XDR-TB | lineage2.2.1 | None | SRR1048975 | HR-TB | lineage2.2.1 | None | SRR1048974 | HR-TB | lineage2.2.1 | None | SRR1048988 | HR-TB | lineage2.2 | None | SRR1048980 | HR-TB | lineage3 | None | SRR1048985 | HR-TB | lineage2.2.1 | None | SRR1048983 | HR-TB | None | SRR1048987 | HR-TB | lineage2.2.1 | None | SRR1048986 | HR-TB | lineage2.2.1 | None | SRR1048992 | HR-TB | lineage2.2.2 | None | SRR1048991 | HR-TB | lineage2.2.2 | None | SRR1048997 | HR-TB | lineage2.2.1 | None | SRR1048994 | HR-TB | lineage4.9 | None | SRR1048996 | HR-TB | lineage4.5 | None | SRR1048993 | HR-TB | lineage4.9 | None | SRR1048995 | HR-TB | lineage4.5 | None | SRR1049005 | MDR-TB | lineage2.2.2 | None | SRR1048998 | HR-TB | lineage2.2.1 | None | SRR1049004 | MDR-TB | lineage2.2.2 | None | SRR1049006 | MDR-TB | lineage2.2.2 | None | SRR1049007 | Pre-XDR-TB | lineage2.2.2 | None | SRR1049022 | HR-TB | lineage4.9;lineage2 | None | SRR1049026 | Pre-XDR-TB | None | SRR1049023 | HR-TB | lineage2.2 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049040 | MDR-TB | lineage2.2.1 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049027 | Pre-XDR-TB | None | SRR1049041 | MDR-TB | None | SRR1049725 | RR-TB | lineage4.1.2.1 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | SRR1049672 | Other | lineage3 | None | SRR1049726 | MDR-TB | lineage4.4.1.1;lineage4.1.2.1 | None | SRR1062928 | RR-TB | lineage4 | None | SRR1062871 | MDR-TB | lineage4.3.4.2.1 | None | SRR1062918 | Pre-XDR-TB | lineage3 | None | SRR1144809 | HR-TB | lineage2.2.1 | None | SRR1144744 | HR-TB | lineage2.2.1 | None | SRR10993951 | RR-TB | La1.6 | None | SRR1140716 | Pre-XDR-TB | lineage3 | None | SRR1140736 | RR-TB | None | SRR1140753 | MDR-TB | lineage4.3.4.2.1 | None | SRR1144759 | MDR-TB | lineage2.2 | None | SRR1173450 | RR-TB | lineage4.9 | None | SRR1172066 | Sensitive | lineage4.9 | None | SRR1173170 | Other | lineage4.9 | None | SRR1173185 | HR-TB | lineage4.9 | None | SRR1173770 | Other | lineage4.9 | None | SRR1173740 | Other | None | SRR1196478 | MDR-TB | lineage4.9 | None | SRR1184329 | MDR-TB | lineage4.9 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR17567887 | Sensitive | lineage4.4.1.2 | None | SRR17567930 | Other | lineage4.4.1.1 | None | SRR1792022 | Other | La1.8.1 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR3619764 | Pre-XDR-TB | lineage2.2 | None | SRR2100067 | Other | lineage4.3.3 | None | SRR3601585 | Pre-XDR-TB | lineage2.2 | None | ERR4815310 | Other | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02360583 | HR-TB | lineage2.2.2 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | ERR4815572 | Other | lineage4.1.2.1 | None | ERR2446544 | Sensitive | lineage3 | nl | ERR1750921 | Sensitive | lineage4.1.1.3 | None | ERR4815550 | Other | lineage4 | None | ERR4815909 | Other | lineage4.8 | None | SAMN02360556 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02360581 | HR-TB | lineage2.2.1 | None | ERR3275548 | Sensitive | lineage3 | nl | ERR4817060 | RR-TB | None | ERR212114 | Other | lineage4.3.4.2.1 | None | ERR4817131 | Pre-XDR-TB | None | SAMN02360586 | HR-TB | lineage2.2.1 | None | ERR3275709 | HR-TB | lineage3 | nl | ERR216965 | HR-TB | lineage4.9 | None | ERR4816702 | RR-TB | lineage4.6.2.2 | None | SAMN02360571 | HR-TB | lineage2.2.2;lineage2.2.1 | None | ERR4816610 | RR-TB | lineage4.3.3 | None | SAMN02360590 | MDR-TB | lineage2.2.2 | None | ERR4817915 | RR-TB | lineage4.9 | None | ERR4816729 | Sensitive | lineage4.9 | None | SAMN02360570 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02360562 | Pre-XDR-TB | lineage4.4.2 | None | ERR4816755 | Other | lineage4.1.1.3 | None | ERR4817526 | Other | lineage4.4.1.1 | gb | ERR4819086 | HR-TB | lineage4.6.2.2 | None | SAMN02360595 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2 | None | SAMN02360580 | HR-TB | lineage2.2.1 | None | SAMN02360574 | HR-TB | lineage2.2.1 | None | SAMN02398710 | MDR-TB | lineage2.2.2 | None | SAMN02360591 | Pre-XDR-TB | lineage2.2.2 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR4819051 | Other | lineage4 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | SAMN02360577 | HR-TB | lineage3 | None | ERR4818904 | Other | lineage4.8 | None | SAMN02360563 | Pre-XDR-TB | lineage2.2.2 | None | SRR5007168 | RR-TB | lineage4.9 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | SRR5007170 | RR-TB | lineage4.9 | None | ERR4817584 | MDR-TB | lineage3 | None | SRR5341365 | Pre-XDR-TB | lineage3 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | ERR4819265 | HR-TB | lineage4.3.4.1 | None | ERR4821276 | Other | lineage3 | None | ERR4820410 | Pre-XDR-TB | lineage3.1.1 | None | ERR4819863 | RR-TB | lineage4.9 | None | ERR4819910 | Other | lineage4.9 | None | ERR4820030 | Other | lineage4.9 | None | SAMN02360585 | HR-TB | lineage4.5 | None | SAMN02360579 | HR-TB | lineage2.2.1.1 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR4819430 | Sensitive | lineage4.1.2.1 | None | SAMN02360564 | Pre-XDR-TB | lineage2.2.1 | None | ERR4819864 | RR-TB | lineage1.1.3.1 | None | ERR2517457 | Sensitive | lineage3 | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR4821272 | RR-TB | lineage4.1.2.1 | None | ERR4829238 | Sensitive | lineage3 | None | SRR6046376 | Other | lineage3 | None | ERR4821704 | MDR-TB | lineage4.3.3 | None | ERR4821747 | MDR-TB | lineage4.9;lineage4.2.1 | None | SRR6044780 | Other | lineage4.9 | None | SRR6045010 | Other | lineage4 | None | SRR6045267 | RR-TB | lineage4 | None | SRR6046839 | Other | lineage4.9 | None | SRR6046834 | Sensitive | lineage4.9 | None | SRR6046609 | Sensitive | lineage4.9 | None | ERR502517 | MDR-TB | lineage5.1.1 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR502481 | Pre-XDR-TB | lineage4.9 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR502473 | Pre-XDR-TB | lineage4.9 | None | ERR502474 | Pre-XDR-TB | lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR323108 | HR-TB | lineage4 | None | SRR7131160 | Sensitive | lineage3 | None | ERR1034647 | MDR-TB | lineage4.1.1.3 | None | ERR038289 | Other | lineage4.3.3 | None | ERR1034652 | Other | None | ERR10796564 | Other | lineage4.3.3 | None | ERR10796577 | RR-TB | lineage4.9 | None | ERR10796565 | RR-TB | lineage4.9 | None | ERR10796572 | Other | lineage4.3.4.1 | None | ERR10796576 | RR-TB | lineage4.9 | None | ERR10796591 | MDR-TB | lineage4.9 | None | ERR3283014 | HR-TB | None | ERR10796633 | RR-TB | lineage4.3.4 | None | ERR10796594 | Other | lineage4.9 | None | ERR3283057 | HR-TB | lineage4 | None | ERR3283031 | HR-TB | None | ERR3283049 | Sensitive | lineage4.9 | None | ERR3283047 | HR-TB | None | ERR3283028 | Other | None | ERR3439265 | Other | lineage4.9 | None | ERR3439489 | RR-TB | La1.8.1 | None | ERR3797063 | HR-TB | None | ERR3797048 | HR-TB | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797084 | Sensitive | lineage4.9 | None | ERR3797064 | Sensitive | None | ERR3797087 | Sensitive | lineage4 | None | ERR736856 | HR-TB | lineage4 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR751317 | Sensitive | lineage4.9 | None |
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