Rv0668 - c.-474G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
31 Sensitive
19 RR-TB
43 HR-TB
15 MDR-TB
25 Pre-XDR-TB
0 XDR-TB
32 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.3.4.2.1 | 4 |
| lineage2.2.2;lineage4 | 7 |
| lineage4.9 | 27 |
| lineage2.2.2 | 17 |
| lineage2.2.1 | 32 |
| lineage4.1.2.1;lineage4.4.1.1 | 1 |
| lineage4.1.2.1 | 4 |
| lineage4.1.2.1;lineage4.4.1 | 1 |
| lineage2.2.1;lineage4.9 | 1 |
| lineage4 | 1 |
| lineage4.5 | 2 |
| lineage4.4.1.1 | 2 |
| La3;lineage4.9 | 8 |
| La1.7;lineage4.9 | 2 |
| lineage4.3.4.2 | 1 |
| lineage4.3.3 | 5 |
| lineage4.8 | 1 |
| lineage3 | 14 |
| lineage2 | 1 |
| lineage2.2.1.1 | 2 |
| La1.8.1 | 1 |
| lineage4.1.2.1;lineage4.9 | 1 |
| lineage4.1.1.3 | 1 |
| lineage2;lineage4.9 | 1 |
| lineage2.2;lineage4 | 1 |
| lineage2.2.1;lineage2.2.2 | 4 |
| lineage4.4.2 | 2 |
| lineage1.1.3.1 | 1 |
| lineage4.4.1.1.1 | 2 |
| lineage4.8.1 | 2 |
| La1.6 | 1 |
| lineage4.8.2;lineage4.9 | 1 |
| lineage2.2.1;lineage4 | 3 |
| lineage2.2;lineage4.9 | 2 |
| lineage2.2.1.1;lineage4 | 1 |
| lineage2.2.2;lineage4.9 | 1 |
| lineage4.4.1.2 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| La3;lineage4 | 1 |
| lineage4.3.3;lineage4.9 | 1 |
| lineage4.2.2.2 | 1 |
| lineage4.1.2 | 1 |
| lineage3;lineage4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 165 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR1048886 | HR-TB | lineage2.2.2;lineage4 | None | ERR4816729 | Sensitive | lineage4.9 | None | ERR4821747 | Sensitive | lineage4.9 | None | SRR1013621 | Pre-XDR-TB | lineage2.2.2 | None | SRR1144809 | HR-TB | lineage2.2.1 | None | SRR1048965 | HR-TB | lineage2.2.1 | None | SRR1049726 | Other | lineage4.1.2.1;lineage4.4.1.1 | None | ERR11465562 | Other | lineage4.1.2.1 | None | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | ERR4815310 | Other | lineage2.2.1;lineage4.9 | None | SRR1013609 | Sensitive | lineage4 | None | SRR1013611 | Sensitive | lineage4.5 | None | SRR1173170 | Other | lineage4.9 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | SRR1013589 | HR-TB | lineage2.2.1 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | SRR1013577 | HR-TB | lineage2.2.2 | None | ERR502481 | RR-TB | lineage4.9 | None | SRR17567930 | Sensitive | lineage4.4.1.1 | None | SRR6046834 | Sensitive | lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | SRR1048994 | HR-TB | lineage4.9 | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | ERR10796633 | Other | lineage4.3.4.2 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013582 | Pre-XDR-TB | lineage2.2.1 | None | ERR038289 | Other | lineage4.3.3 | None | ERR4818904 | Other | lineage4.8 | None | ERR2517457 | Sensitive | lineage3 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR4819430 | Sensitive | lineage4.1.2.1 | None | SRR1013607 | HR-TB | lineage2.2.2 | None | SRR1049040 | HR-TB | lineage2 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | SRR1013569 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02360556 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02360579 | HR-TB | lineage2.2.1.1 | None | SAMN02360570 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02360574 | HR-TB | lineage2.2.1 | None | SAMN02360581 | HR-TB | lineage2.2.1 | None | SAMN02360564 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013584 | HR-TB | lineage2.2.2 | None | ERR4821276 | Sensitive | lineage3 | None | ERR3439489 | RR-TB | La1.8.1 | None | SRR1013578 | HR-TB | lineage2.2.2;lineage4 | None | SRR1048975 | HR-TB | lineage2.2.1 | None | SRR2100067 | Other | lineage4.3.3 | None | SRR6046376 | Other | lineage3 | None | SRR1047993 | HR-TB | lineage2.2.1 | None | SRR1013600 | Sensitive | lineage2.2.1.1 | None | SRR1062928 | Other | lineage4.1.2.1;lineage4.9 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR1173185 | Other | lineage4.9 | None | SRR1049006 | HR-TB | lineage2.2.2;lineage4 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR1034647 | MDR-TB | lineage4.1.1.3 | None | SAMN02360583 | HR-TB | lineage2.2.2 | None | ERR3797087 | Sensitive | lineage4.9 | None | ERR10796565 | Other | lineage4.9 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | SRR1013590 | HR-TB | lineage2.2.1 | None | SRR1048991 | HR-TB | lineage2;lineage4.9 | None | SRR3619764 | Pre-XDR-TB | lineage2.2.1 | None | ERR502474 | RR-TB | lineage4.9 | None | SRR1013601 | HR-TB | lineage2.2.1 | None | SRR1048993 | HR-TB | lineage4.9 | None | SRR6044780 | Sensitive | lineage4.9 | None | SRR1013596 | Sensitive | lineage3 | None | SRR1049672 | Other | lineage3 | None | SRR1013583 | Sensitive | lineage2.2.2 | None | ERR212114 | Other | lineage4.3.4.2.1 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | SRR1047996 | MDR-TB | lineage2.2.2 | None | SRR1048885 | HR-TB | lineage2.2;lineage4 | None | ERR4821704 | Other | lineage4.3.3 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR4819051 | Sensitive | lineage4.9 | None | SRR1048869 | HR-TB | lineage2.2.1;lineage2.2.2 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | SRR1013570 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02360595 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048998 | HR-TB | lineage2.2.1 | None | SAMN02360562 | Pre-XDR-TB | lineage4.4.2 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2.1 | None | ERR4819864 | RR-TB | lineage1.1.3.1 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR11342653 | MDR-TB | lineage2.2.1 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | SRR1013603 | HR-TB | lineage2.2.1 | None | SRR1013595 | Sensitive | lineage3 | None | SRR10993951 | RR-TB | La1.6 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | SRR1013581 | Pre-XDR-TB | lineage2.2.1 | None | SRR5007168 | Other | lineage4.8.2;lineage4.9 | None | SRR1013618 | RR-TB | lineage2.2.1;lineage4 | None | SRR1049026 | HR-TB | lineage2.2;lineage4.9 | None | SRR1184329 | Other | lineage4.9 | None | ERR4819383 | RR-TB | lineage4.9 | None | SRR1013599 | HR-TB | lineage2.2.1.1;lineage4 | None | SRR1013567 | Pre-XDR-TB | lineage2.2.2 | None | SRR1013630 | Pre-XDR-TB | lineage2.2.2;lineage4 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | SRR1049022 | HR-TB | lineage2.2.2;lineage4.9 | None | SRR1013604 | HR-TB | lineage2.2.1 | None | SRR11342693 | MDR-TB | lineage4.8.1 | None | SRR17567887 | Sensitive | lineage4.4.1.2 | None | SRR1048980 | HR-TB | lineage3 | None | SRR1140736 | Other | lineage4.1.2.1 | None | ERR4817915 | Other | lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | SRR1140716 | Other | lineage3 | None | SRR1048867 | Pre-XDR-TB | lineage2.2.2 | None | SRR1013602 | HR-TB | lineage2.2.1 | None | SRR1013597 | Sensitive | lineage2.2.2;lineage4 | None | ERR3283028 | Other | La3;lineage4 | None | SRR1140753 | RR-TB | lineage4.3.4.2.1 | None | SRR1013598 | Sensitive | lineage2.2.2;lineage4 | None | ERR10796564 | Other | lineage4.3.3 | None | SRR3601585 | Pre-XDR-TB | lineage2.2.1 | None | ERR4815550 | Other | lineage2.2;lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | SRR1013568 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048866 | Pre-XDR-TB | lineage4.4.2 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | SRR7131160 | Sensitive | lineage3 | None | ERR4821272 | RR-TB | lineage4.1.2.1 | None | ERR4829238 | Sensitive | lineage3 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR502473 | RR-TB | lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | SAMN02360585 | HR-TB | lineage4.5 | None | SAMN02360571 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SAMN02360586 | HR-TB | lineage2.2.1 | None | SAMN02360580 | HR-TB | lineage2.2.1 | None | SAMN02360577 | HR-TB | lineage3 | None | SRR1013617 | Sensitive | lineage2.2.1;lineage4 | None | SAMN02360591 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02398710 | MDR-TB | lineage2.2.2 | None | SAMN02360563 | Pre-XDR-TB | lineage2.2.2 | None | SRR11342636 | MDR-TB | lineage4.3.3;lineage4.9 | None | SRR1013608 | Sensitive | lineage2.2.2 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR1048870 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SRR1049041 | HR-TB | lineage2.2.1;lineage4 | None | SRR1048986 | HR-TB | lineage2.2.1 | None | SRR11342682 | Other | lineage4.1.2 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR3797064 | Other | La3;lineage4.9 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173740 | Other | lineage3;lineage4 | None | SRR5341365 | Pre-XDR-TB | lineage3 | None | SRR1144759 | HR-TB | lineage2.2.2;lineage4 | None | ERR3797065 | RR-TB | lineage4.9 | None | SRR1048968 | HR-TB | lineage2.2.1;lineage2.2.2 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | SRR1196478 | Other | lineage4.9 | None | SRR1062918 | Other | lineage3 | None | ERR4819863 | RR-TB | lineage4.9 | None |
|---|
