Run ID: SRR1062918
Sample name:
Date: 02-04-2023 18:40:34
Number of reads: 1513049
Percentage reads mapped: 43.1
Strain: lineage3
Drug-resistance: Pre-XDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage3 | East-African-Indian | CAS | RD750 | 0.99 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
gyrA | 7570 | p.Ala90Val | missense_variant | 0.33 | ofloxacin, moxifloxacin, levofloxacin, fluoroquinolones, ciprofloxacin |
gyrA | 7572 | p.Ser91Pro | missense_variant | 0.17 | ofloxacin, moxifloxacin, levofloxacin, fluoroquinolones, ciprofloxacin |
gyrA | 7581 | p.Asp94Asn | missense_variant | 0.37 | ofloxacin, moxifloxacin, levofloxacin, fluoroquinolones, ciprofloxacin |
rpoB | 761127 | p.Ser441Ala | missense_variant | 0.12 | rifampicin |
rpsL | 781822 | p.Lys88Arg | missense_variant | 0.17 | streptomycin |
rrs | 1472644 | n.799C>T | non_coding_transcript_exon_variant | 0.51 | streptomycin |
rrs | 1473247 | n.1402C>A | non_coding_transcript_exon_variant | 0.7 | kanamycin, capreomycin, aminoglycosides, amikacin |
rrs | 1473329 | n.1484G>T | non_coding_transcript_exon_variant | 0.4 | kanamycin, capreomycin, aminoglycosides, amikacin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8531 | c.1230G>A | synonymous_variant | 0.17 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 490639 | c.-144C>G | upstream_gene_variant | 0.12 |
fgd1 | 490689 | c.-94C>T | upstream_gene_variant | 0.2 |
fgd1 | 491251 | p.Leu157Ile | missense_variant | 0.2 |
fgd1 | 491256 | p.Lys158Asn | missense_variant | 0.2 |
fgd1 | 491553 | c.771G>A | synonymous_variant | 0.13 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 0.94 |
mshA | 575193 | c.-155G>T | upstream_gene_variant | 0.17 |
mshA | 576588 | p.Gly414Glu | missense_variant | 0.15 |
ccsA | 620697 | p.Phe269Leu | missense_variant | 0.21 |
ccsA | 620823 | c.933C>T | synonymous_variant | 0.17 |
rpoB | 759746 | c.-61C>T | upstream_gene_variant | 1.0 |
rpoB | 761191 | p.Ala462Gly | missense_variant | 0.11 |
rpoB | 761234 | c.1428G>C | synonymous_variant | 0.15 |
rpoB | 761973 | p.His723Tyr | missense_variant | 0.29 |
rpoB | 761980 | p.Tyr725Phe | missense_variant | 0.29 |
rpoB | 761987 | c.2181C>T | synonymous_variant | 0.31 |
rpoB | 761999 | c.2193G>C | synonymous_variant | 0.33 |
rpoB | 762002 | c.2196C>G | synonymous_variant | 0.29 |
rpoB | 762003 | p.Asn733Gln | missense_variant | 0.29 |
rpoB | 762015 | p.Glu737Gln | missense_variant | 0.28 |
rpoB | 762020 | p.Glu738Asp | missense_variant | 0.26 |
rpoB | 762026 | c.2220G>C | synonymous_variant | 0.44 |
rpoB | 762030 | p.Thr742Ser | missense_variant | 0.42 |
rpoB | 762053 | c.2247T>C | synonymous_variant | 0.41 |
rpoB | 762057 | p.Ile751Val | missense_variant | 0.39 |
rpoB | 762062 | c.2256T>C | synonymous_variant | 0.37 |
rpoB | 762065 | c.2259T>C | synonymous_variant | 0.32 |
rpoB | 762080 | c.2274G>C | synonymous_variant | 0.21 |
rpoB | 762086 | c.2280G>C | synonymous_variant | 0.21 |
rpoB | 762185 | c.2379G>C | synonymous_variant | 0.15 |
rpoB | 762194 | c.2388G>C | synonymous_variant | 0.27 |
rpoB | 762233 | c.2427G>C | synonymous_variant | 0.29 |
rpoB | 762245 | c.2439G>T | synonymous_variant | 0.3 |
rpoB | 762251 | c.2445G>C | synonymous_variant | 0.29 |
rpoB | 762254 | c.2448T>G | synonymous_variant | 0.29 |
rpoB | 762257 | c.2451C>G | synonymous_variant | 0.29 |
rpoB | 762273 | p.Ala823Ser | missense_variant | 0.27 |
rpoB | 762278 | c.2472C>T | synonymous_variant | 0.24 |
rpoB | 762284 | c.2478G>C | synonymous_variant | 0.21 |
rpoB | 762293 | c.2487T>C | synonymous_variant | 0.15 |
rpoC | 762434 | c.-936T>G | upstream_gene_variant | 1.0 |
rpoB | 762855 | p.Val1017Ile | missense_variant | 0.21 |
rpoB | 762858 | p.Thr1018Ser | missense_variant | 0.2 |
rpoC | 762863 | c.-507T>C | upstream_gene_variant | 0.19 |
rpoC | 762866 | c.-504C>A | upstream_gene_variant | 0.24 |
rpoB | 762878 | p.Ile1024Met | missense_variant | 0.28 |
rpoB | 762879 | p.Met1025Leu | missense_variant | 0.28 |
rpoC | 762887 | c.-483G>C | upstream_gene_variant | 0.34 |
rpoC | 762896 | c.-474G>C | upstream_gene_variant | 0.43 |
rpoC | 762899 | c.-471G>C | upstream_gene_variant | 0.41 |
rpoC | 762917 | c.-453C>G | upstream_gene_variant | 0.37 |
rpoC | 762923 | c.-447C>G | upstream_gene_variant | 0.38 |
rpoC | 762929 | c.-441G>T | upstream_gene_variant | 0.36 |
rpoC | 762980 | c.-390T>C | upstream_gene_variant | 0.22 |
rpoC | 762983 | c.-387C>T | upstream_gene_variant | 0.16 |
rpoC | 762989 | c.-381G>C | upstream_gene_variant | 0.16 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 763094 | c.-276G>C | upstream_gene_variant | 0.19 |
rpoC | 763100 | c.-270G>A | upstream_gene_variant | 0.19 |
rpoC | 763103 | c.-267G>C | upstream_gene_variant | 0.21 |
rpoB | 763122 | p.Ile1106Leu | missense_variant | 0.2 |
rpoC | 763127 | c.-243G>C | upstream_gene_variant | 0.23 |
rpoB | 763130 | p.Glu1108Asp | missense_variant | 0.22 |
rpoC | 763136 | c.-234C>A | upstream_gene_variant | 0.21 |
rpoC | 763157 | c.-213G>C | upstream_gene_variant | 0.2 |
rpoC | 763160 | c.-210G>C | upstream_gene_variant | 0.19 |
rpoB | 763161 | p.Leu1119Ile | missense_variant | 0.18 |
rpoC | 763166 | c.-204A>G | upstream_gene_variant | 0.19 |
rpoC | 763169 | c.-201A>G | upstream_gene_variant | 0.19 |
rpoB | 763170 | p.Leu1122Met | missense_variant | 0.19 |
rpoC | 763468 | c.99G>C | synonymous_variant | 0.17 |
rpoC | 763483 | c.114G>C | synonymous_variant | 0.28 |
rpoC | 763486 | c.117T>G | synonymous_variant | 0.32 |
rpoC | 763504 | c.135C>A | synonymous_variant | 0.41 |
rpoC | 763507 | c.138G>C | synonymous_variant | 0.37 |
rpoC | 763528 | c.159G>C | synonymous_variant | 0.41 |
rpoC | 763531 | c.162G>C | synonymous_variant | 0.43 |
rpoC | 763534 | c.165T>C | synonymous_variant | 0.41 |
rpoC | 763537 | c.168C>T | synonymous_variant | 0.42 |
rpoC | 763546 | c.177A>G | synonymous_variant | 0.44 |
rpoC | 763550 | p.Tyr61Ala | missense_variant | 0.42 |
rpoC | 763570 | c.201G>C | synonymous_variant | 0.48 |
rpoC | 763585 | c.216C>G | synonymous_variant | 0.52 |
rpoC | 763621 | c.252C>T | synonymous_variant | 0.57 |
rpoC | 763633 | c.264T>C | synonymous_variant | 0.56 |
rpoC | 763642 | c.273G>C | synonymous_variant | 0.58 |
rpoC | 763660 | c.291T>C | synonymous_variant | 0.53 |
rpoC | 763666 | c.297G>T | synonymous_variant | 0.58 |
rpoC | 763696 | c.327T>C | synonymous_variant | 0.44 |
rpoC | 763699 | c.330G>T | synonymous_variant | 0.44 |
rpoC | 763708 | c.339G>C | synonymous_variant | 0.3 |
rpoC | 763709 | c.340C>T | synonymous_variant | 0.29 |
rpoC | 763714 | c.345G>C | synonymous_variant | 0.3 |
rpoC | 763717 | c.348T>C | synonymous_variant | 0.3 |
rpoC | 763723 | c.354G>C | synonymous_variant | 0.32 |
rpoC | 763726 | c.357C>T | synonymous_variant | 0.39 |
rpoC | 763729 | c.360G>C | synonymous_variant | 0.32 |
rpoC | 763732 | c.363C>G | synonymous_variant | 0.32 |
rpoC | 763744 | c.375G>C | synonymous_variant | 0.31 |
rpoC | 763751 | p.Ile128Val | missense_variant | 0.32 |
rpoC | 763765 | c.396T>C | synonymous_variant | 0.19 |
rpoC | 763926 | p.Ala186Asp | missense_variant | 0.2 |
rpoC | 764446 | p.Asp359Glu | missense_variant | 0.12 |
rpoC | 764491 | c.1122G>C | synonymous_variant | 0.26 |
rpoC | 764498 | p.Ser377Ala | missense_variant | 0.23 |
rpoC | 764503 | c.1134G>C | synonymous_variant | 0.24 |
rpoC | 764507 | p.Ala380Ser | missense_variant | 0.25 |
rpoC | 764521 | c.1152T>C | synonymous_variant | 0.37 |
rpoC | 764524 | c.1155C>T | synonymous_variant | 0.41 |
rpoC | 764527 | c.1158C>T | synonymous_variant | 0.37 |
rpoC | 764533 | c.1164C>T | synonymous_variant | 0.42 |
rpoC | 764536 | c.1167G>T | synonymous_variant | 0.43 |
rpoC | 764542 | c.1173C>G | synonymous_variant | 0.48 |
rpoC | 764548 | c.1179G>A | synonymous_variant | 0.49 |
rpoC | 764560 | c.1191T>C | synonymous_variant | 0.59 |
rpoC | 764575 | c.1206T>G | synonymous_variant | 0.53 |
rpoC | 764578 | c.1209C>G | synonymous_variant | 0.53 |
rpoC | 764581 | c.1212T>C | synonymous_variant | 0.52 |
rpoC | 764582 | p.Leu405Met | missense_variant | 0.52 |
rpoC | 764611 | c.1242G>C | synonymous_variant | 0.52 |
rpoC | 764632 | c.1263T>C | synonymous_variant | 0.38 |
rpoC | 764650 | c.1281G>T | synonymous_variant | 0.42 |
rpoC | 764662 | c.1293G>C | synonymous_variant | 0.42 |
rpoC | 764668 | c.1299C>T | synonymous_variant | 0.4 |
rpoC | 764679 | p.Lys437Ser | missense_variant | 0.33 |
rpoC | 764683 | c.1314G>C | synonymous_variant | 0.34 |
rpoC | 764690 | p.Cys441Ala | missense_variant | 0.4 |
rpoC | 764701 | c.1332C>G | synonymous_variant | 0.45 |
rpoC | 764705 | p.Leu446Thr | missense_variant | 0.42 |
rpoC | 764716 | c.1347G>C | synonymous_variant | 0.51 |
rpoC | 764737 | c.1368G>C | synonymous_variant | 0.4 |
rpoC | 764746 | c.1377G>C | synonymous_variant | 0.35 |
rpoC | 764752 | c.1383G>C | synonymous_variant | 0.31 |
rpoC | 764755 | c.1386C>T | synonymous_variant | 0.3 |
rpoC | 764764 | c.1395T>C | synonymous_variant | 0.31 |
rpoC | 764780 | c.1411_1413delAGCinsTCG | synonymous_variant | 0.28 |
rpoC | 764797 | c.1428G>C | synonymous_variant | 0.38 |
rpoC | 764803 | c.1434C>T | synonymous_variant | 0.31 |
rpoC | 764808 | p.Arg480His | missense_variant | 0.27 |
rpoC | 764812 | c.1443C>G | synonymous_variant | 0.19 |
rpoC | 764815 | c.1446A>G | synonymous_variant | 0.19 |
rpoC | 764863 | c.1494G>A | synonymous_variant | 0.18 |
rpoC | 764935 | c.1566T>C | synonymous_variant | 0.13 |
rpoC | 764948 | c.1579_1581delTTGinsCTC | synonymous_variant | 0.23 |
rpoC | 764956 | c.1587T>C | synonymous_variant | 0.23 |
rpoC | 764957 | p.Glu530Ser | missense_variant | 0.23 |
rpoC | 764968 | c.1599T>C | synonymous_variant | 0.28 |
rpoC | 764998 | c.1629G>C | synonymous_variant | 0.32 |
rpoC | 765007 | c.1638T>G | synonymous_variant | 0.32 |
rpoC | 765008 | c.1639T>C | synonymous_variant | 0.33 |
rpoC | 765014 | p.Ala549Pro | missense_variant | 0.35 |
rpoC | 765019 | c.1650A>G | synonymous_variant | 0.33 |
rpoC | 765034 | c.1665T>C | synonymous_variant | 0.17 |
rpoC | 765250 | c.1881G>A | synonymous_variant | 0.14 |
rpoC | 765902 | p.Thr845Ser | missense_variant | 0.26 |
rpoC | 765910 | c.2541G>C | synonymous_variant | 0.29 |
rpoC | 765923 | p.Asn852Ala | missense_variant | 0.41 |
rpoC | 765926 | p.Thr853Ser | missense_variant | 0.44 |
rpoC | 765937 | c.2568T>C | synonymous_variant | 0.39 |
rpoC | 765940 | c.2571A>C | synonymous_variant | 0.39 |
rpoC | 765947 | c.2578_2580delTTGinsCTC | synonymous_variant | 0.37 |
rpoC | 765958 | c.2589C>G | synonymous_variant | 0.37 |
rpoC | 765962 | c.2593T>C | synonymous_variant | 0.32 |
rpoC | 765967 | c.2598C>T | synonymous_variant | 0.29 |
rpoC | 765973 | c.2604C>T | synonymous_variant | 0.3 |
rpoC | 765994 | c.2625A>T | synonymous_variant | 0.18 |
rpoC | 765997 | c.2628T>C | synonymous_variant | 0.16 |
rpoC | 766141 | c.2772C>G | synonymous_variant | 0.22 |
rpoC | 766480 | c.3111C>G | synonymous_variant | 0.11 |
rpoC | 766571 | p.Pro1068Ser | missense_variant | 0.13 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 0.96 |
mmpL5 | 777673 | p.Ala270Thr | missense_variant | 0.2 |
mmpL5 | 777701 | c.780C>A | synonymous_variant | 0.17 |
mmpL5 | 778241 | p.Lys80Asn | missense_variant | 0.18 |
mmpL5 | 778360 | p.Val41Leu | missense_variant | 0.14 |
mmpL5 | 778426 | p.Ala19Ser | missense_variant | 0.14 |
mmpS5 | 779516 | c.-611C>A | upstream_gene_variant | 0.17 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781796 | p.Met79Ile | missense_variant | 0.17 |
rpsL | 781802 | c.243G>C | synonymous_variant | 0.15 |
rpsL | 781817 | c.258G>T | synonymous_variant | 0.16 |
rpsL | 781820 | c.261G>C | synonymous_variant | 0.16 |
rpsL | 781829 | c.270G>T | synonymous_variant | 0.17 |
rpsL | 781832 | c.273T>G | synonymous_variant | 0.17 |
rplC | 801285 | c.477G>C | synonymous_variant | 0.11 |
fbiC | 1303077 | c.147C>T | synonymous_variant | 0.18 |
fbiC | 1303553 | p.Ala208Glu | missense_variant | 0.17 |
fbiC | 1303720 | p.Gly264Cys | missense_variant | 0.15 |
fbiC | 1304463 | c.1533C>T | synonymous_variant | 0.18 |
fbiC | 1304540 | p.Arg537Pro | missense_variant | 0.13 |
fbiC | 1304976 | c.2046G>A | synonymous_variant | 0.25 |
Rv1258c | 1406143 | c.1198C>T | synonymous_variant | 0.17 |
embR | 1416930 | p.Ala140Ser | missense_variant | 0.22 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472092 | n.247C>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472102 | n.257G>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472108 | n.263C>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472112 | n.267C>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472113 | n.268T>C | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472120 | n.275G>A | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472148 | n.303T>C | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472223 | n.378C>G | non_coding_transcript_exon_variant | 0.56 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472228 | n.383G>C | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472245 | n.400C>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472251 | n.406G>C | non_coding_transcript_exon_variant | 0.47 |
rrs | 1472279 | n.434T>G | non_coding_transcript_exon_variant | 0.32 |
rrs | 1472337 | n.492C>T | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472344 | n.499C>T | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472400 | n.555C>T | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472427 | n.582T>G | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472431 | n.586G>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472476 | n.631A>G | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472484 | n.639A>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472494 | n.649A>G | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472496 | n.651T>A | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472498 | n.653C>T | non_coding_transcript_exon_variant | 0.47 |
rrs | 1472506 | n.661A>T | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.65 |
rrs | 1472572 | n.727T>A | non_coding_transcript_exon_variant | 0.74 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.69 |
rrs | 1472591 | n.746G>A | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472607 | n.762G>A | non_coding_transcript_exon_variant | 0.61 |
rrs | 1472655 | n.810G>T | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472660 | n.815T>C | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472692 | n.847T>C | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472714 | n.869A>G | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472734 | n.889C>T | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472790 | n.945T>C | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472825 | n.980G>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472828 | n.983T>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472895 | n.1050C>T | non_coding_transcript_exon_variant | 0.39 |
rrs | 1472952 | n.1107T>C | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472955 | n.1110C>T | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472973 | n.1128A>G | non_coding_transcript_exon_variant | 0.58 |
rrs | 1472982 | n.1137G>A | non_coding_transcript_exon_variant | 0.51 |
rrs | 1472987 | n.1142G>A | non_coding_transcript_exon_variant | 0.51 |
rrs | 1472989 | n.1144G>A | non_coding_transcript_exon_variant | 0.49 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.49 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.39 |
rrs | 1473047 | n.1202C>T | non_coding_transcript_exon_variant | 0.35 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.29 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.29 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.22 |
rrs | 1473081 | n.1236C>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 0.37 |
rrs | 1473123 | n.1278A>T | non_coding_transcript_exon_variant | 0.38 |
rrs | 1473130 | n.1285G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473147 | n.1302G>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473148 | n.1303G>A | non_coding_transcript_exon_variant | 0.66 |
rrs | 1473157 | n.1312C>T | non_coding_transcript_exon_variant | 0.68 |
rrs | 1473163 | n.1318C>T | non_coding_transcript_exon_variant | 0.7 |
rrs | 1473164 | n.1319C>A | non_coding_transcript_exon_variant | 0.7 |
rrs | 1473252 | n.1407T>C | non_coding_transcript_exon_variant | 0.7 |
rrs | 1473276 | n.1431A>G | non_coding_transcript_exon_variant | 0.61 |
rrs | 1473291 | n.1446G>T | non_coding_transcript_exon_variant | 0.39 |
rrs | 1473298 | n.1453A>G | non_coding_transcript_exon_variant | 0.41 |
rrs | 1473301 | n.1456T>C | non_coding_transcript_exon_variant | 0.41 |
rrs | 1473305 | n.1460G>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1473315 | n.1470T>C | non_coding_transcript_exon_variant | 0.4 |
rrs | 1473316 | n.1471C>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1473319 | n.1474C>T | non_coding_transcript_exon_variant | 0.41 |
rrl | 1473832 | n.175C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1473833 | n.176_177insT | non_coding_transcript_exon_variant | 0.22 |
rrl | 1473898 | n.241C>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1474151 | n.494C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474155 | n.498G>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474164 | n.507C>T | non_coding_transcript_exon_variant | 0.31 |
rrl | 1474171 | n.514C>G | non_coding_transcript_exon_variant | 0.34 |
rrl | 1474181 | n.524C>T | non_coding_transcript_exon_variant | 0.36 |
rrl | 1474183 | n.526T>C | non_coding_transcript_exon_variant | 0.38 |
rrl | 1474184 | n.527C>T | non_coding_transcript_exon_variant | 0.39 |
rrl | 1474202 | n.545T>C | non_coding_transcript_exon_variant | 0.53 |
rrl | 1474263 | n.606G>A | non_coding_transcript_exon_variant | 0.45 |
rrl | 1474269 | n.612C>T | non_coding_transcript_exon_variant | 0.41 |
rrl | 1474287 | n.630T>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1474290 | n.633T>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474348 | n.691C>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1474351 | n.694G>C | non_coding_transcript_exon_variant | 0.38 |
rrl | 1474353 | n.696A>G | non_coding_transcript_exon_variant | 0.38 |
rrl | 1474354 | n.697C>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1474355 | n.698A>G | non_coding_transcript_exon_variant | 0.38 |
rrl | 1474356 | n.699T>C | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474359 | n.702C>G | non_coding_transcript_exon_variant | 0.36 |
rrl | 1474362 | n.705A>G | non_coding_transcript_exon_variant | 0.36 |
rrl | 1474387 | n.730C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474402 | n.745T>C | non_coding_transcript_exon_variant | 0.23 |
rrl | 1474406 | n.749T>C | non_coding_transcript_exon_variant | 0.23 |
rrl | 1474520 | n.863A>C | non_coding_transcript_exon_variant | 0.16 |
rrl | 1474529 | n.872A>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474530 | n.873G>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474537 | n.880G>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474540 | n.883T>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474551 | n.894G>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474558 | n.901G>T | non_coding_transcript_exon_variant | 0.26 |
rrl | 1474584 | n.927C>T | non_coding_transcript_exon_variant | 0.36 |
rrl | 1474636 | n.979A>T | non_coding_transcript_exon_variant | 0.37 |
rrl | 1474637 | n.980C>T | non_coding_transcript_exon_variant | 0.35 |
rrl | 1474638 | n.981C>G | non_coding_transcript_exon_variant | 0.37 |
rrl | 1474639 | n.982G>C | non_coding_transcript_exon_variant | 0.38 |
rrl | 1474663 | n.1006C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474673 | n.1016T>C | non_coding_transcript_exon_variant | 0.34 |
rrl | 1474676 | n.1019T>C | non_coding_transcript_exon_variant | 0.3 |
rrl | 1474677 | n.1020A>G | non_coding_transcript_exon_variant | 0.3 |
rrl | 1474692 | n.1035G>A | non_coding_transcript_exon_variant | 0.27 |
rrl | 1474694 | n.1037C>T | non_coding_transcript_exon_variant | 0.24 |
rrl | 1474783 | n.1126G>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 0.41 |
rrl | 1474806 | n.1149A>G | non_coding_transcript_exon_variant | 0.53 |
rrl | 1474822 | n.1165G>T | non_coding_transcript_exon_variant | 0.57 |
rrl | 1474827 | n.1170C>T | non_coding_transcript_exon_variant | 0.58 |
rrl | 1474830 | n.1173A>G | non_coding_transcript_exon_variant | 0.61 |
rrl | 1474905 | n.1248T>A | non_coding_transcript_exon_variant | 0.56 |
rrl | 1474927 | n.1271delC | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474932 | n.1275C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474985 | n.1328C>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475104 | n.1447T>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475109 | n.1452C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1475114 | n.1457C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475116 | n.1459G>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475124 | n.1467A>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475129 | n.1472G>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475175 | n.1518G>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475176 | n.1519G>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475659 | n.2002G>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1475672 | n.2015C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475696 | n.2039T>A | non_coding_transcript_exon_variant | 0.52 |
rrl | 1475697 | n.2040C>T | non_coding_transcript_exon_variant | 0.55 |
rrl | 1475699 | n.2042C>T | non_coding_transcript_exon_variant | 0.55 |
rrl | 1475703 | n.2046A>T | non_coding_transcript_exon_variant | 0.55 |
rrl | 1475763 | n.2106C>T | non_coding_transcript_exon_variant | 0.68 |
rrl | 1475764 | n.2107A>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475765 | n.2108A>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475883 | n.2226A>T | non_coding_transcript_exon_variant | 0.85 |
rrl | 1475884 | n.2227A>G | non_coding_transcript_exon_variant | 0.85 |
rrl | 1475897 | n.2240T>C | non_coding_transcript_exon_variant | 0.83 |
rrl | 1475898 | n.2241A>G | non_coding_transcript_exon_variant | 0.83 |
rrl | 1475899 | n.2242G>A | non_coding_transcript_exon_variant | 0.83 |
rrl | 1475916 | n.2259C>T | non_coding_transcript_exon_variant | 0.81 |
rrl | 1475943 | n.2286G>A | non_coding_transcript_exon_variant | 0.76 |
rrl | 1475952 | n.2295A>G | non_coding_transcript_exon_variant | 0.71 |
rrl | 1475963 | n.2306G>A | non_coding_transcript_exon_variant | 0.66 |
rrl | 1475975 | n.2318C>T | non_coding_transcript_exon_variant | 0.47 |
rrl | 1475977 | n.2320A>G | non_coding_transcript_exon_variant | 0.45 |
rrl | 1475978 | n.2321C>T | non_coding_transcript_exon_variant | 0.45 |
rrl | 1475988 | n.2331A>G | non_coding_transcript_exon_variant | 0.26 |
rrl | 1475989 | n.2332T>G | non_coding_transcript_exon_variant | 0.26 |
rrl | 1475990 | n.2333G>C | non_coding_transcript_exon_variant | 0.26 |
rrl | 1475997 | n.2340A>G | non_coding_transcript_exon_variant | 0.23 |
rrl | 1475998 | n.2341C>T | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476099 | n.2442A>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476105 | n.2450delA | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476115 | n.2458T>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476130 | n.2473G>A | non_coding_transcript_exon_variant | 0.48 |
rrl | 1476131 | n.2474C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476164 | n.2507A>G | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476165 | n.2508T>A | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476194 | n.2537A>G | non_coding_transcript_exon_variant | 0.63 |
rrl | 1476200 | n.2543A>T | non_coding_transcript_exon_variant | 0.53 |
rrl | 1476201 | n.2544C>T | non_coding_transcript_exon_variant | 0.54 |
rrl | 1476214 | n.2557G>T | non_coding_transcript_exon_variant | 0.49 |
rrl | 1476224 | n.2567A>G | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476245 | n.2588C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476337 | n.2680C>T | non_coding_transcript_exon_variant | 0.46 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.69 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.78 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.73 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476515 | n.2858C>T | non_coding_transcript_exon_variant | 0.72 |
rrl | 1476519 | n.2862C>T | non_coding_transcript_exon_variant | 0.72 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 0.68 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.68 |
rrl | 1476530 | n.2873C>T | non_coding_transcript_exon_variant | 0.7 |
rrl | 1476534 | n.2877A>T | non_coding_transcript_exon_variant | 0.68 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 0.66 |
rrl | 1476539 | n.2882A>G | non_coding_transcript_exon_variant | 0.66 |
rrl | 1476540 | n.2883C>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476547 | n.2890C>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.34 |
rrl | 1476585 | n.2928A>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476594 | n.2937C>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476603 | n.2946G>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476608 | n.2951C>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476614 | n.2957A>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476616 | n.2959A>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476619 | n.2962C>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476628 | n.2971T>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476629 | n.2972C>A | non_coding_transcript_exon_variant | 0.16 |
fabG1 | 1673582 | p.Gly48Val | missense_variant | 0.14 |
inhA | 1673816 | c.-386G>A | upstream_gene_variant | 1.0 |
inhA | 1674861 | c.660G>A | synonymous_variant | 0.17 |
rpsA | 1833668 | p.Ile43Val | missense_variant | 0.25 |
rpsA | 1833676 | c.135A>G | synonymous_variant | 0.26 |
rpsA | 1833679 | c.138G>C | synonymous_variant | 0.28 |
rpsA | 1833682 | c.141C>T | synonymous_variant | 0.29 |
rpsA | 1833685 | c.144G>C | synonymous_variant | 0.27 |
rpsA | 1833694 | c.153G>C | synonymous_variant | 0.26 |
rpsA | 1833698 | p.Leu53Val | missense_variant | 0.25 |
rpsA | 1833709 | c.168C>A | synonymous_variant | 0.27 |
rpsA | 1833718 | c.177C>G | synonymous_variant | 0.29 |
rpsA | 1833919 | c.378C>T | synonymous_variant | 0.14 |
rpsA | 1833928 | c.387G>C | synonymous_variant | 0.13 |
rpsA | 1833940 | c.399C>T | synonymous_variant | 0.15 |
rpsA | 1833949 | c.408T>C | synonymous_variant | 0.13 |
rpsA | 1834303 | c.762T>C | synonymous_variant | 0.15 |
rpsA | 1834327 | c.786G>T | synonymous_variant | 0.32 |
rpsA | 1834348 | c.807T>G | synonymous_variant | 0.33 |
rpsA | 1834354 | c.813G>C | synonymous_variant | 0.33 |
rpsA | 1834357 | c.816T>C | synonymous_variant | 0.37 |
rpsA | 1834361 | c.820_822delTTGinsCTC | synonymous_variant | 0.33 |
rpsA | 1834366 | c.825A>G | synonymous_variant | 0.33 |
rpsA | 1834378 | c.837T>G | synonymous_variant | 0.43 |
rpsA | 1834387 | c.846C>T | synonymous_variant | 0.52 |
rpsA | 1834395 | p.Arg285Gln | missense_variant | 0.46 |
rpsA | 1834408 | c.867C>G | synonymous_variant | 0.35 |
rpsA | 1834411 | c.870T>C | synonymous_variant | 0.32 |
rpsA | 1834416 | p.Ala292Val | missense_variant | 0.32 |
rpsA | 1834423 | c.882G>C | synonymous_variant | 0.36 |
rpsA | 1834451 | c.910_912delTTGinsCTC | synonymous_variant | 0.35 |
rpsA | 1834468 | c.927A>G | synonymous_variant | 0.3 |
rpsA | 1834474 | c.933C>G | synonymous_variant | 0.28 |
rpsA | 1834486 | p.Glu315Asp | missense_variant | 0.24 |
rpsA | 1834489 | c.948T>C | synonymous_variant | 0.23 |
rpsA | 1834501 | c.960G>C | synonymous_variant | 0.17 |
rpsA | 1834504 | c.963G>C | synonymous_variant | 0.17 |
rpsA | 1834519 | c.978G>C | synonymous_variant | 0.13 |
tlyA | 1917745 | c.-195G>A | upstream_gene_variant | 0.13 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102073 | p.Ala324Ser | missense_variant | 0.2 |
ndh | 2102289 | p.Val252Leu | missense_variant | 0.25 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
katG | 2155262 | p.Val284Leu | missense_variant | 0.18 |
katG | 2155758 | c.354C>A | synonymous_variant | 0.22 |
katG | 2156016 | c.96C>A | synonymous_variant | 0.18 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289047 | c.195C>T | synonymous_variant | 0.95 |
pncA | 2289365 | c.-125delC | upstream_gene_variant | 1.0 |
kasA | 2518723 | p.Glu203Asp | missense_variant | 0.12 |
kasA | 2518895 | p.Pro261Ser | missense_variant | 0.29 |
kasA | 2518959 | p.Ala282Gly | missense_variant | 0.13 |
kasA | 2519047 | c.933C>T | synonymous_variant | 0.15 |
eis | 2715359 | c.-27C>T | upstream_gene_variant | 0.14 |
ahpC | 2726105 | c.-88G>A | upstream_gene_variant | 0.97 |
folC | 2746682 | p.Leu306Pro | missense_variant | 0.13 |
folC | 2746756 | c.843C>T | synonymous_variant | 0.15 |
folC | 2747208 | p.Val131Leu | missense_variant | 0.18 |
folC | 2747714 | c.-116G>T | upstream_gene_variant | 0.25 |
pepQ | 2859494 | p.Gly309Trp | missense_variant | 0.18 |
pepQ | 2859565 | p.Gly285Asp | missense_variant | 0.18 |
pepQ | 2859925 | p.Pro165Leu | missense_variant | 0.22 |
ribD | 2987598 | p.Arg254Cys | missense_variant | 0.15 |
Rv2752c | 3065699 | p.Ile165Val | missense_variant | 0.12 |
thyX | 3067987 | c.-42C>T | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiD | 3339106 | c.-12C>A | upstream_gene_variant | 0.14 |
Rv3083 | 3448445 | c.-59G>T | upstream_gene_variant | 0.16 |
Rv3083 | 3449079 | c.576G>A | synonymous_variant | 0.17 |
Rv3083 | 3449340 | c.837C>T | synonymous_variant | 0.18 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3475161 | c.1155T>C | synonymous_variant | 0.12 |
fprA | 3475266 | c.1260G>C | synonymous_variant | 0.2 |
fprA | 3475304 | p.Ala433Gly | missense_variant | 0.33 |
whiB7 | 3568469 | p.Phe71Ile | missense_variant | 0.14 |
Rv3236c | 3612006 | p.Arg371Gly | missense_variant | 0.13 |
fbiA | 3640720 | p.Pro60Thr | missense_variant | 0.15 |
fbiB | 3640914 | c.-621C>G | upstream_gene_variant | 0.12 |
fbiA | 3641443 | p.Val301Met | missense_variant | 0.13 |
fbiB | 3641511 | c.-24G>C | upstream_gene_variant | 0.17 |
fbiB | 3641651 | p.Trp39* | stop_gained | 0.13 |
alr | 3840734 | c.687C>T | synonymous_variant | 0.17 |
alr | 3840745 | p.Gly226Trp | missense_variant | 0.22 |
alr | 3840783 | c.637delC | frameshift_variant | 0.29 |
alr | 3841256 | p.His55Gln | missense_variant | 0.15 |
rpoA | 3877803 | c.705G>C | synonymous_variant | 0.13 |
rpoA | 3878655 | c.-148C>G | upstream_gene_variant | 0.12 |
clpC1 | 4038202 | p.Ala835Pro | missense_variant | 0.14 |
clpC1 | 4038220 | p.Glu829Lys | missense_variant | 0.14 |
clpC1 | 4038235 | p.Arg824Ser | missense_variant | 0.14 |
clpC1 | 4038884 | c.1821C>A | synonymous_variant | 0.18 |
clpC1 | 4039480 | p.Arg409Trp | missense_variant | 0.29 |
clpC1 | 4039781 | c.924G>C | synonymous_variant | 0.17 |
clpC1 | 4039802 | c.903G>C | synonymous_variant | 0.16 |
clpC1 | 4039808 | c.897G>A | synonymous_variant | 0.16 |
clpC1 | 4039838 | c.867G>C | synonymous_variant | 0.11 |
clpC1 | 4039850 | c.855T>C | synonymous_variant | 0.12 |
clpC1 | 4039976 | p.Lys243Thr | missense_variant | 0.25 |
clpC1 | 4039982 | p.Thr241Ile | missense_variant | 0.21 |
clpC1 | 4039991 | c.714G>T | synonymous_variant | 0.35 |
clpC1 | 4040002 | p.His235Asn | missense_variant | 0.38 |
clpC1 | 4040003 | c.702G>C | synonymous_variant | 0.39 |
clpC1 | 4040009 | c.696C>G | synonymous_variant | 0.42 |
clpC1 | 4040021 | c.684A>T | synonymous_variant | 0.47 |
clpC1 | 4040024 | c.681A>G | synonymous_variant | 0.49 |
clpC1 | 4040030 | c.675C>G | synonymous_variant | 0.54 |
clpC1 | 4040033 | c.672G>C | synonymous_variant | 0.54 |
clpC1 | 4040063 | c.642G>C | synonymous_variant | 0.53 |
clpC1 | 4040066 | c.639G>T | synonymous_variant | 0.52 |
clpC1 | 4040081 | c.624C>G | synonymous_variant | 0.54 |
clpC1 | 4040087 | c.618G>C | synonymous_variant | 0.27 |
clpC1 | 4040090 | c.615T>C | synonymous_variant | 0.29 |
embC | 4239979 | c.117A>T | synonymous_variant | 0.17 |
embC | 4240949 | p.Val363Ile | missense_variant | 0.14 |
embC | 4241381 | p.Gly507Arg | missense_variant | 0.15 |
embC | 4242075 | p.Arg738Gln | missense_variant | 1.0 |
embC | 4242162 | p.Ala767Glu | missense_variant | 0.17 |
embC | 4242471 | p.Arg870Leu | missense_variant | 0.15 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243203 | c.-30C>T | upstream_gene_variant | 0.17 |
embA | 4243383 | p.Ala51Thr | missense_variant | 0.15 |
embA | 4243703 | c.471C>T | synonymous_variant | 0.17 |
embA | 4245079 | p.Trp616* | stop_gained | 0.15 |
embB | 4245563 | c.-951G>A | upstream_gene_variant | 0.15 |
embA | 4245678 | p.Lys816Glu | missense_variant | 0.12 |
embA | 4245784 | p.Thr851Met | missense_variant | 0.14 |
embB | 4246271 | c.-243G>A | upstream_gene_variant | 0.23 |
embB | 4246654 | c.141G>A | synonymous_variant | 0.2 |
embB | 4247260 | c.747C>A | synonymous_variant | 0.17 |
embB | 4247332 | p.Trp273* | stop_gained | 0.15 |
embB | 4247358 | p.Val282Ala | missense_variant | 0.64 |
embB | 4248401 | p.Ala630Thr | missense_variant | 0.14 |
aftB | 4267363 | p.Gly492Ser | missense_variant | 0.14 |
aftB | 4267387 | p.His484Tyr | missense_variant | 0.2 |
aftB | 4268536 | p.Gly101Trp | missense_variant | 0.15 |
aftB | 4268720 | c.117C>G | synonymous_variant | 0.12 |
ubiA | 4269017 | p.Glu273Lys | missense_variant | 0.2 |
ubiA | 4269094 | p.Trp247Leu | missense_variant | 0.18 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407987 | c.216C>T | synonymous_variant | 0.15 |
gid | 4408019 | p.Gly62Arg | missense_variant | 0.13 |