| lineage | Count |
|---|---|
| lineage3 | 8 |
| lineage4.9 | 27 |
| lineage4.8 | 22 |
| lineage4.6.5 | 1 |
| lineage2.2;lineage4 | 1 |
| lineage4.5 | 1 |
| lineage4.1.1.2 | 1 |
| lineage1.1.2 | 1 |
| lineage2.2.1 | 11 |
| lineage4.2.1 | 3 |
| lineage4.3.3;lineage4.9 | 1 |
| lineage2.2.2 | 1 |
| lineage4.4.1.1.1 | 2 |
| lineage4.1.2 | 2 |
| La1.6 | 1 |
| lineage4.1.1.1 | 2 |
| lineage4.3.4.2.1 | 3 |
| La1;lineage4.9 | 2 |
| La1.7;lineage4.9;lineage6 | 1 |
| lineage2.2;lineage4.9 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| lineage4.2.2.2 | 2 |
| lineage4.1.1.3 | 1 |
| lineage4.8.1 | 1 |
| La1.4 | 1 |
| lineage4.4.1.1 | 1 |
| lineage4.1.2.1 | 2 |
| lineage4.3.2.1 | 1 |
| lineage3;lineage4 | 1 |
| lineage4.1.2.1;lineage4.9 | 1 |
| lineage4 | 1 |
| lineage4.6.1.1 | 1 |
| lineage4.1.2.1;lineage4.4.1.1 | 1 |
| lineage3.1.1 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4.1.2.1;lineage4.4.1 | 1 |
| lineage2.2.1;lineage4.9 | 1 |
| 1 |
| spoligotype | Count |
|---|---|
| None | 112 |
| ID | Drug resistance | Lineage | Country iso2 | SRR1049673 | Pre-XDR-TB | lineage3 | None | ERR502481 | RR-TB | lineage4.9 | None | ERR502474 | RR-TB | lineage4.9 | None | ERR978694_ERR978693 | Other | lineage4.8 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | SRR16156832 | RR-TB | lineage2.2;lineage4 | None | SRR1049672 | Other | lineage3 | None | ERR323107 | Sensitive | lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | SRR10809074 | Sensitive | lineage4.9 | None | ERR978750_ERR978752_ERR978751 | RR-TB | lineage4.8 | None | ERR1063883 | HR-TB | lineage4.9 | None | ERR978755_ERR978756_ERR978754_ERR978757 | RR-TB | lineage4.8 | None | SRR16156817 | Other | lineage4.9 | None | ERR2517457 | Sensitive | lineage3 | None | SRR7131160 | Sensitive | lineage3 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR4816852 | Other | lineage4.9 | None | ERR978693 | Other | lineage4.8 | None | ERR4816548 | HR-TB | lineage4.5 | None | ERR4818252 | Sensitive | lineage4.1.1.2 | None | ERR4829238 | Sensitive | lineage3 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR867525 | Pre-XDR-TB | lineage2.2.1 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | SRR11342636 | MDR-TB | lineage4.3.3;lineage4.9 | None | SRR11342664 | MDR-TB | lineage2.2.2 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | SRR11342658 | RR-TB | lineage4.1.2 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | SRR10993951 | RR-TB | La1.6 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | ERR4814976 | Other | lineage4.9 | None | SRR5818647 | Other | lineage4.3.4.2.1 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | SRR15315871 | Sensitive | lineage4.9 | None | ERR978746 | RR-TB | lineage4.8 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR1062918 | Other | lineage3 | None | ERR4819863 | RR-TB | lineage4.9 | None | ERR978754 | RR-TB | lineage4.8 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR1140724 | Other | lineage2.2.1 | None | ERR978750 | RR-TB | lineage4.8 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR978733 | RR-TB | lineage4.8 | None | ERR405190 | Sensitive | lineage4.9 | None | ERR2228910 | Other | lineage4.8 | None | ERR978746_ERR978747_ERR978748 | RR-TB | lineage4.8 | None | ERR773806 | Sensitive | lineage2.2.1 | None | ERR405191 | Sensitive | lineage4.9 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | ERR978756 | Other | lineage4.8 | None | ERR6358979 | Other | lineage4.9 | None | ERR4821172 | RR-TB | lineage4.9 | None | SAMEA3501015 | Other | lineage4.8 | None | ERR4815550 | Other | lineage2.2;lineage4.9 | None | ERR978761_ERR978762_ERR978760 | RR-TB | lineage4.8 | None | SRR16156775 | Other | lineage4.9 | None | ERR1023494 | Sensitive | lineage3 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | ERR4872269 | XDR-TB | lineage2.2.1 | None | ERR502473 | RR-TB | lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2.1 | None | SRR10808805 | Other | La1;lineage4.9 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | ERR867523 | Pre-XDR-TB | lineage2.2.1 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR16278274 | Other | La1.4 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | ERR4769493 | Other | lineage4.9 | None | SRR4034391 | MDR-TB | lineage4.1.2.1 | None | ERR2228900 | Other | lineage4.8 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR4033434 | Sensitive | lineage4.3.2.1 | None | SRR1173740 | Other | lineage3;lineage4 | None | SRR16156697 | RR-TB | lineage2.2.1 | None | ERR978734_ERR978733_ERR978735 | RR-TB | lineage4.8 | None | ERR978735 | Other | lineage4.8 | None | SRR1062928 | Other | lineage4.1.2.1;lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR3283006 | RR-TB | lineage4.9 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | SRR1735598 | RR-TB | lineage4.9 | None | ERR978757 | RR-TB | lineage4.8 | None | SRR28351339 | MDR-TB | lineage4 | None | ERR3078008 | MDR-TB | lineage4.6.1.1 | None | SRR1049726 | Other | lineage4.1.2.1;lineage4.4.1.1 | None | SRR1173310 | Other | lineage3.1.1 | None | SRR17567887 | Sensitive | lineage4.4.1.2 | None | SRR023487 | RR-TB | lineage2.2.1 | None | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | SRR1140736 | Other | lineage4.1.2.1 | None | ERR4815310 | Other | lineage2.2.1;lineage4.9 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | ERR4796577 | HR-TB | None | ERR4816322 | Other | lineage4.9 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | SRR1049675 | HR-TB | lineage2.2.1 | None |
|---|