TB-Profiler result

Run: SRR16278274
Summary

Run ID: SRR16278274

Sample name:

Date: 03-04-2023 16:50:17

Number of reads: 4590361

Percentage reads mapped: 37.89

Strain: La1.4

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
La1 M.bovis None None 1.0
La1.4 M.bovis None None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
gyrB 6695 p.Ile486Leu missense_variant 0.27 ofloxacin, moxifloxacin, levofloxacin, fluoroquinolones, ciprofloxacin
rrs 1472644 n.799C>T non_coding_transcript_exon_variant 0.91 streptomycin
pncA 2289073 p.His57Asp missense_variant 1.0 pyrazinamide
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5752 c.513G>A synonymous_variant 1.0
gyrB 6172 c.933C>T synonymous_variant 0.97
gyrA 6406 c.-896C>T upstream_gene_variant 1.0
gyrB 6446 p.Ala403Ser missense_variant 1.0
gyrA 6700 c.-602T>C upstream_gene_variant 0.3
gyrA 6709 c.-593A>G upstream_gene_variant 0.33
gyrA 6712 c.-590G>C upstream_gene_variant 0.34
gyrB 6718 p.Ile493Met missense_variant 0.34
gyrA 6724 c.-578G>C upstream_gene_variant 0.34
gyrA 6730 c.-572A>G upstream_gene_variant 0.35
gyrA 6733 c.-569G>A upstream_gene_variant 0.33
gyrB 6737 p.Thr500Ala missense_variant 0.33
gyrA 6742 c.-560A>G upstream_gene_variant 0.33
gyrA 6745 c.-557T>C upstream_gene_variant 0.33
gyrA 6751 c.-551G>C upstream_gene_variant 0.33
gyrA 6760 c.-542G>C upstream_gene_variant 0.32
gyrA 6775 c.-527G>C upstream_gene_variant 0.32
gyrB 6779 p.His514Asn missense_variant 0.32
gyrA 6784 c.-518C>T upstream_gene_variant 0.32
gyrA 6787 c.-515G>A upstream_gene_variant 0.31
gyrA 6793 c.-509T>C upstream_gene_variant 0.32
gyrB 6798 p.Gly520Ala missense_variant 0.32
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 8285 c.984C>T synonymous_variant 1.0
gyrA 9143 c.1842T>C synonymous_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491742 c.960T>C synonymous_variant 0.99
rpoB 760331 c.525G>C synonymous_variant 0.18
rpoB 760334 c.528G>C synonymous_variant 0.17
rpoB 760337 c.531C>G synonymous_variant 0.17
rpoB 760340 c.534G>C synonymous_variant 0.17
rpoB 760372 c.566_567insGGAG frameshift_variant 0.24
rpoB 760375 p.Asp190Ala missense_variant 0.23
rpoB 760376 c.571_574delAAGA frameshift_variant 0.24
rpoB 760389 c.583_584delAGinsTC synonymous_variant 0.23
rpoB 760394 c.588C>G synonymous_variant 0.22
rpoB 760400 c.594G>C synonymous_variant 0.22
rpoB 760407 c.601_603delAGCinsTCG synonymous_variant 0.22
rpoB 760424 c.618C>G synonymous_variant 0.3
rpoB 760430 c.624T>C synonymous_variant 0.31
rpoB 760436 c.630C>G synonymous_variant 0.32
rpoB 760457 c.651C>T synonymous_variant 0.33
rpoB 760475 c.669A>G synonymous_variant 0.25
rpoB 760481 c.675G>C synonymous_variant 0.23
rpoB 760484 c.678A>G synonymous_variant 0.22
rpoB 760502 c.696C>G synonymous_variant 0.18
rpoB 760522 p.Ser239Thr missense_variant 0.16
rpoB 760532 c.726T>C synonymous_variant 0.15
rpoB 760533 p.Val243Thr missense_variant 0.14
rpoB 760541 c.735G>C synonymous_variant 0.14
rpoB 760547 c.741G>C synonymous_variant 0.14
rpoB 761969 c.2163G>A synonymous_variant 0.3
rpoB 761990 c.2184G>C synonymous_variant 0.35
rpoB 761998 c.2193_2195delGTC disruptive_inframe_deletion 0.35
rpoB 762005 c.2200_2201insAGC disruptive_inframe_insertion 0.34
rpoB 762009 p.Leu735Val missense_variant 0.35
rpoB 762017 c.2211A>G synonymous_variant 0.34
rpoB 762020 c.2214G>A synonymous_variant 0.35
rpoB 762024 p.Val740Ile missense_variant 0.34
rpoB 762035 c.2229G>C synonymous_variant 0.35
rpoB 762036 p.Ile744Val missense_variant 0.35
rpoB 762044 c.2238C>T synonymous_variant 0.36
rpoB 762050 c.2244G>A synonymous_variant 0.35
rpoB 762053 c.2247T>C synonymous_variant 0.36
rpoB 762062 c.2256T>C synonymous_variant 0.36
rpoB 762065 c.2259T>C synonymous_variant 0.37
rpoB 762080 c.2274G>C synonymous_variant 0.47
rpoB 762086 c.2280G>C synonymous_variant 0.49
rpoB 762104 p.Asp766Glu missense_variant 0.56
rpoB 762114 p.Ile770Val missense_variant 0.53
rpoB 762122 p.Asp772Glu missense_variant 0.49
rpoB 762125 p.Glu773Asp missense_variant 0.47
rpoB 762132 p.Ala776Lys missense_variant 0.47
rpoB 762137 c.2331C>T synonymous_variant 0.48
rpoB 762143 c.2337T>C synonymous_variant 0.52
rpoB 762149 c.2343G>C synonymous_variant 0.54
rpoB 762156 p.Val784Ile missense_variant 0.54
rpoB 762167 c.2361T>C synonymous_variant 0.57
rpoB 762170 c.2364C>G synonymous_variant 0.57
rpoB 762173 p.Glu789Asp missense_variant 0.57
rpoB 762176 c.2370T>G synonymous_variant 0.56
rpoB 762185 c.2379G>C synonymous_variant 0.58
rpoB 762194 c.2388G>C synonymous_variant 0.58
rpoB 762197 c.2391C>G synonymous_variant 0.58
rpoB 762218 c.2412T>C synonymous_variant 0.53
rpoB 762233 c.2427G>C synonymous_variant 0.47
rpoB 762245 c.2439G>C synonymous_variant 0.4
rpoB 762254 c.2448T>C synonymous_variant 0.33
rpoB 762266 c.2460T>C synonymous_variant 0.32
rpoB 762284 c.2478G>C synonymous_variant 0.32
rpoB 762293 c.2487T>C synonymous_variant 0.21
rpoB 762296 c.2490G>C synonymous_variant 0.16
rpoC 762434 c.-936T>C upstream_gene_variant 0.12
rpoB 762441 p.Leu879Met missense_variant 0.15
rpoC 762452 c.-918G>C upstream_gene_variant 0.15
rpoC 762467 c.-903C>T upstream_gene_variant 0.15
rpoC 762470 c.-900G>C upstream_gene_variant 0.15
rpoB 762471 p.Ile889Val missense_variant 0.15
rpoB 762489 p.Val895Gln missense_variant 0.15
rpoB 762507 p.Leu901Met missense_variant 0.15
rpoC 762512 c.-858C>T upstream_gene_variant 0.15
rpoB 762844 p.Phe1013Tyr missense_variant 0.15
rpoB 762846 p.Pro1014Lys missense_variant 0.15
rpoB 762855 p.Val1017Ile missense_variant 0.17
rpoB 762858 p.Thr1018Ser missense_variant 0.16
rpoC 762863 c.-507T>C upstream_gene_variant 0.19
rpoB 762878 p.Ile1024Met missense_variant 0.18
rpoB 762879 p.Met1025Leu missense_variant 0.18
rpoB 762905 p.Asp1033Glu missense_variant 0.38
rpoC 762920 c.-450C>T upstream_gene_variant 0.49
rpoC 762929 c.-441G>C upstream_gene_variant 0.51
rpoC 762938 c.-432G>C upstream_gene_variant 0.51
rpoC 762944 c.-426C>T upstream_gene_variant 0.52
rpoC 762947 c.-423C>G upstream_gene_variant 0.52
rpoC 762971 c.-399G>C upstream_gene_variant 0.54
rpoC 762980 c.-390T>C upstream_gene_variant 0.56
rpoC 762989 c.-381G>C upstream_gene_variant 0.56
rpoC 762995 c.-375G>C upstream_gene_variant 0.57
rpoB 763005 p.Cys1067Val missense_variant 0.59
rpoC 763013 c.-357C>G upstream_gene_variant 0.62
rpoC 763022 c.-348C>A upstream_gene_variant 0.63
rpoC 763028 c.-342T>C upstream_gene_variant 0.64
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoC 763052 c.-318G>T upstream_gene_variant 0.67
rpoB 763074 p.Thr1090Val missense_variant 0.59
rpoC 763079 c.-291C>G upstream_gene_variant 0.58
rpoC 763088 c.-282C>G upstream_gene_variant 0.58
rpoC 763094 c.-276G>C upstream_gene_variant 0.58
rpoC 763103 c.-267G>C upstream_gene_variant 0.56
rpoC 763106 c.-264C>T upstream_gene_variant 0.55
rpoC 763109 c.-261C>G upstream_gene_variant 0.56
rpoC 763115 c.-255T>C upstream_gene_variant 0.56
rpoB 763118 p.Glu1104Asp missense_variant 0.55
rpoB 763130 p.Glu1108Asp missense_variant 0.54
rpoC 763139 c.-231C>T upstream_gene_variant 0.51
rpoC 763142 c.-228C>G upstream_gene_variant 0.49
rpoC 763148 c.-222G>C upstream_gene_variant 0.46
rpoC 763166 c.-204A>G upstream_gene_variant 0.38
rpoC 763169 c.-201A>G upstream_gene_variant 0.37
rpoC 763178 c.-192G>C upstream_gene_variant 0.28
rpoC 763185 c.-185_-183delCTCinsTTG upstream_gene_variant 0.16
rpoC 763453 c.84C>G synonymous_variant 0.19
rpoC 763456 c.87A>G synonymous_variant 0.23
rpoC 763462 c.93G>C synonymous_variant 0.33
rpoC 763468 c.99G>C synonymous_variant 0.35
rpoC 763471 c.102C>T synonymous_variant 0.35
rpoC 763483 c.114G>C synonymous_variant 0.38
rpoC 763486 c.117T>C synonymous_variant 0.38
rpoC 763517 p.Lys50Arg missense_variant 0.39
rpoC 763528 c.159G>C synonymous_variant 0.42
rpoC 763534 c.165T>C synonymous_variant 0.42
rpoC 763546 c.177A>G synonymous_variant 0.42
rpoC 763550 p.Tyr61Ala missense_variant 0.42
rpoC 763570 c.201G>T synonymous_variant 0.48
rpoC 763573 c.204G>C synonymous_variant 0.49
rpoC 763578 p.Phe70Tyr missense_variant 0.49
rpoC 763594 c.225C>T synonymous_variant 0.5
rpoC 763609 c.240C>T synonymous_variant 0.47
rpoC 763619 p.Arg84Lys missense_variant 0.43
rpoC 763622 p.Ala85Ser missense_variant 0.41
rpoC 763633 c.264T>C synonymous_variant 0.45
rpoC 763636 c.267T>C synonymous_variant 0.46
rpoC 763642 c.273G>C synonymous_variant 0.46
rpoC 763660 c.291T>G synonymous_variant 0.45
rpoC 763666 c.297G>T synonymous_variant 0.4
rpoC 763669 c.300C>G synonymous_variant 0.4
rpoC 763672 c.303C>G synonymous_variant 0.41
rpoC 763675 c.306C>G synonymous_variant 0.42
rpoC 763699 c.330G>C synonymous_variant 0.36
rpoC 763702 c.333C>G synonymous_variant 0.33
rpoC 763705 c.336G>C synonymous_variant 0.32
rpoC 763708 c.339G>C synonymous_variant 0.32
rpoC 763714 c.345G>C synonymous_variant 0.31
rpoC 763717 c.348T>C synonymous_variant 0.3
rpoC 763723 c.354G>C synonymous_variant 0.3
rpoC 763732 c.363C>G synonymous_variant 0.27
rpoC 763744 c.375G>C synonymous_variant 0.15
rpoC 764353 c.984G>C synonymous_variant 0.21
rpoC 764365 c.996C>T synonymous_variant 0.32
rpoC 764371 c.1002G>C synonymous_variant 0.33
rpoC 764380 c.1011G>C synonymous_variant 0.39
rpoC 764387 c.1018T>C synonymous_variant 0.42
rpoC 764404 c.1035C>T synonymous_variant 0.44
rpoC 764405 c.1036_1038delAGGinsCGC synonymous_variant 0.44
rpoC 764410 c.1041G>T synonymous_variant 0.43
rpoC 764428 c.1059G>T synonymous_variant 0.4
rpoC 764429 c.1060C>T synonymous_variant 0.4
rpoC 764434 c.1065A>G synonymous_variant 0.4
rpoC 764435 c.1066_1068delAGGinsCGC synonymous_variant 0.4
rpoC 764438 p.Leu357Met missense_variant 0.4
rpoC 764446 c.1077T>C synonymous_variant 0.43
rpoC 764452 c.1083T>C synonymous_variant 0.41
rpoC 764458 c.1089G>C synonymous_variant 0.42
rpoC 764461 c.1092A>G synonymous_variant 0.44
rpoC 764470 c.1101C>G synonymous_variant 0.49
rpoC 764485 c.1116G>C synonymous_variant 0.51
rpoC 764497 c.1128A>G synonymous_variant 0.54
rpoC 764503 c.1134G>T synonymous_variant 0.55
rpoC 764509 c.1140G>C synonymous_variant 0.56
rpoC 764521 c.1152T>C synonymous_variant 0.53
rpoC 764536 c.1167G>T synonymous_variant 0.52
rpoC 764539 c.1170C>G synonymous_variant 0.52
rpoC 764548 c.1179G>C synonymous_variant 0.56
rpoC 764556 p.Asn396Thr missense_variant 0.59
rpoC 764566 c.1197C>G synonymous_variant 0.59
rpoC 764572 c.1203G>C synonymous_variant 0.6
rpoC 764575 c.1206T>G synonymous_variant 0.61
rpoC 764581 c.1212T>C synonymous_variant 0.63
rpoC 764605 c.1236G>C synonymous_variant 0.68
rpoC 764611 c.1242G>C synonymous_variant 0.69
rpoC 764623 c.1254C>G synonymous_variant 0.67
rpoC 764632 c.1263T>C synonymous_variant 0.66
rpoC 764635 c.1266C>G synonymous_variant 0.65
rpoC 764644 c.1275G>C synonymous_variant 0.64
rpoC 764650 c.1281G>T synonymous_variant 0.6
rpoC 764653 c.1284G>C synonymous_variant 0.6
rpoC 764656 c.1287C>G synonymous_variant 0.6
rpoC 764659 c.1290C>T synonymous_variant 0.59
rpoC 764660 p.Val431Ile missense_variant 0.59
rpoC 764677 c.1308C>G synonymous_variant 0.64
rpoC 764687 p.Gln440Glu missense_variant 0.65
rpoC 764701 c.1332C>G synonymous_variant 0.66
rpoC 764706 p.Leu446Arg missense_variant 0.64
rpoC 764716 c.1347G>C synonymous_variant 0.65
rpoC 764746 c.1377G>C synonymous_variant 0.6
rpoC 764756 p.Leu463Asn missense_variant 0.54
rpoC 764759 p.Asn464Asp missense_variant 0.54
rpoC 764762 p.His465Tyr missense_variant 0.54
rpoC 764780 c.1411_1412delAGinsTC synonymous_variant 0.58
rpoC 764797 c.1428G>C synonymous_variant 0.64
rpoC 764813 p.Gln482Glu missense_variant 0.63
rpoC 764824 c.1455T>C synonymous_variant 0.63
rpoC 764830 c.1461C>G synonymous_variant 0.61
rpoC 764838 p.Val490Ala missense_variant 0.55
rpoC 764842 c.1473C>T synonymous_variant 0.55
rpoC 764843 p.Ala492Ser missense_variant 0.55
rpoC 764858 c.1489T>C synonymous_variant 0.61
rpoC 764863 c.1494G>C synonymous_variant 0.61
rpoC 764875 c.1506C>G synonymous_variant 0.57
rpoC 764878 c.1509C>G synonymous_variant 0.57
rpoC 764887 c.1518G>C synonymous_variant 0.56
rpoC 764888 c.1519T>C synonymous_variant 0.56
rpoC 764911 c.1542A>G synonymous_variant 0.52
rpoC 764913 p.Met515Lys missense_variant 0.51
rpoC 764920 c.1551G>C synonymous_variant 0.5
rpoC 764926 c.1557C>T synonymous_variant 0.49
rpoC 764935 c.1566T>C synonymous_variant 0.45
rpoC 764948 c.1579T>C synonymous_variant 0.34
rpoC 764952 p.Val528Ala missense_variant 0.28
rpoC 764968 c.1599T>C synonymous_variant 0.28
rpoC 764983 c.1614T>C synonymous_variant 0.26
rpoC 764995 c.1626C>A synonymous_variant 0.2
rpoC 764998 c.1629G>C synonymous_variant 0.18
rpoC 766328 p.Lys987Gln missense_variant 0.23
rpoC 766333 c.2964G>C synonymous_variant 0.27
rpoC 766345 c.2976T>C synonymous_variant 0.33
rpoC 766348 c.2979A>G synonymous_variant 0.32
rpoC 766369 c.3000C>G synonymous_variant 0.32
rpoC 766378 c.3009C>T synonymous_variant 0.33
rpoC 766381 c.3012C>T synonymous_variant 0.34
rpoC 766384 c.3015A>G synonymous_variant 0.34
rpoC 766387 c.3018C>G synonymous_variant 0.34
rpoC 766390 c.3021C>T synonymous_variant 0.34
rpoC 766393 c.3024C>G synonymous_variant 0.34
rpoC 766408 c.3039C>T synonymous_variant 0.34
rpoC 766423 c.3054T>C synonymous_variant 0.37
rpoC 766432 c.3063T>C synonymous_variant 0.36
rpoC 766434 p.Glu1022Gly missense_variant 0.36
rpoC 766456 c.3087C>G synonymous_variant 0.35
rpoC 766459 c.3090G>T synonymous_variant 0.35
rpoC 767002 c.3633G>C synonymous_variant 0.18
rpoC 767008 c.3639G>C synonymous_variant 0.24
rpoC 767020 c.3651C>G synonymous_variant 0.26
rpoC 767023 p.Asp1218Glu missense_variant 0.27
rpoC 767026 c.3657G>C synonymous_variant 0.27
rpoC 767041 c.3672G>C synonymous_variant 0.25
rpoC 767044 c.3675G>C synonymous_variant 0.25
rpoC 767059 c.3690T>C synonymous_variant 0.24
rpoC 767068 c.3699G>C synonymous_variant 0.24
rpoC 767071 c.3702C>G synonymous_variant 0.24
rpoC 767074 c.3705T>C synonymous_variant 0.23
rpoC 767077 c.3708G>C synonymous_variant 0.23
rpoC 767087 p.Cys1240Lys missense_variant 0.23
rpoC 767093 c.3724_3725delAGinsTC synonymous_variant 0.24
rpoC 767098 c.3729T>C synonymous_variant 0.26
rpoC 767104 c.3735C>G synonymous_variant 0.26
rpoC 767106 p.Asn1246Ile missense_variant 0.26
rpoC 767110 c.3741T>C synonymous_variant 0.26
rpoC 767119 c.3750A>G synonymous_variant 0.26
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 0.99
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781703 c.144G>T synonymous_variant 0.14
rpsL 781709 c.150G>T synonymous_variant 0.15
rpsL 781748 c.189C>T synonymous_variant 0.15
rpsL 781749 p.Thr64Ser missense_variant 0.15
rpsL 781760 c.201T>C synonymous_variant 0.22
rpsL 781763 c.204C>G synonymous_variant 0.24
rpsL 781793 c.234G>C synonymous_variant 0.41
rpsL 781802 c.243G>C synonymous_variant 0.4
rpsL 781814 c.255C>T synonymous_variant 0.37
rpsL 781817 c.258G>T synonymous_variant 0.38
rpsL 781832 c.273T>G synonymous_variant 0.39
rpsL 781850 c.291C>T synonymous_variant 0.41
rpsL 781851 p.Ile98Val missense_variant 0.41
rpsL 781859 c.300T>C synonymous_variant 0.4
rpsL 781860 p.Ser101Ala missense_variant 0.41
rpsL 781871 c.312G>C synonymous_variant 0.42
rpsL 781880 c.321C>G synonymous_variant 0.42
rpsL 781884 p.Asn109Asp missense_variant 0.41
rpsL 781892 c.333A>G synonymous_variant 0.4
rpsL 781898 c.339A>T synonymous_variant 0.37
rpsL 781902 c.343_344delAGinsTC synonymous_variant 0.34
rpsL 781916 c.357T>A synonymous_variant 0.21
rplC 800610 c.-199_-197delCTAinsTTG upstream_gene_variant 0.18
rplC 800615 c.-194G>C upstream_gene_variant 0.17
rplC 800619 c.-190G>C upstream_gene_variant 0.17
fbiC 1302899 c.-32A>G upstream_gene_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471878 n.33C>T non_coding_transcript_exon_variant 0.78
rrs 1471923 n.78T>C non_coding_transcript_exon_variant 0.81
rrs 1471931 n.86G>C non_coding_transcript_exon_variant 0.82
rrs 1472042 n.197T>G non_coding_transcript_exon_variant 0.88
rrs 1472054 n.210_212delCGC non_coding_transcript_exon_variant 0.88
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 0.87
rrs 1472062 n.217G>T non_coding_transcript_exon_variant 0.87
rrs 1472078 n.233C>T non_coding_transcript_exon_variant 0.88
rrs 1472104 n.259G>A non_coding_transcript_exon_variant 0.39
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.88
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.89
rrs 1472123 n.278A>T non_coding_transcript_exon_variant 0.89
rrs 1472151 n.306C>A non_coding_transcript_exon_variant 0.88
rrs 1472160 n.315C>T non_coding_transcript_exon_variant 0.86
rrs 1472278 n.433C>T non_coding_transcript_exon_variant 0.75
rrs 1472279 n.434T>C non_coding_transcript_exon_variant 0.75
rrs 1472285 n.440A>G non_coding_transcript_exon_variant 0.74
rrs 1472287 n.442C>T non_coding_transcript_exon_variant 0.74
rrs 1472289 n.444T>G non_coding_transcript_exon_variant 0.74
rrs 1472290 n.445C>G non_coding_transcript_exon_variant 0.73
rrs 1472297 n.453_465delGTCCGGGTTCTCT non_coding_transcript_exon_variant 0.73
rrs 1472312 n.467G>T non_coding_transcript_exon_variant 0.14
rrs 1472313 n.468G>T non_coding_transcript_exon_variant 0.75
rrs 1472314 n.469A>T non_coding_transcript_exon_variant 0.17
rrs 1472315 n.471_472insTGT non_coding_transcript_exon_variant 0.71
rrs 1472324 n.479G>C non_coding_transcript_exon_variant 0.76
rrs 1472325 n.480G>C non_coding_transcript_exon_variant 0.76
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 0.72
rrs 1472435 n.590T>C non_coding_transcript_exon_variant 0.77
rrs 1472439 n.594C>T non_coding_transcript_exon_variant 0.77
rrs 1472443 n.598A>T non_coding_transcript_exon_variant 0.77
rrs 1472446 n.601T>G non_coding_transcript_exon_variant 0.77
rrs 1472448 n.603T>C non_coding_transcript_exon_variant 0.77
rrs 1472450 n.605A>G non_coding_transcript_exon_variant 0.77
rrs 1472452 n.607G>A non_coding_transcript_exon_variant 0.78
rrs 1472462 n.617T>C non_coding_transcript_exon_variant 0.77
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.76
rrs 1472466 n.621C>A non_coding_transcript_exon_variant 0.77
rrs 1472467 n.622G>C non_coding_transcript_exon_variant 0.77
rrs 1472471 n.626G>A non_coding_transcript_exon_variant 0.78
rrs 1472489 n.644A>T non_coding_transcript_exon_variant 0.81
rrs 1472494 n.649A>G non_coding_transcript_exon_variant 0.82
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.84
rrs 1472558 n.713G>A non_coding_transcript_exon_variant 0.85
rrs 1472569 n.724G>A non_coding_transcript_exon_variant 0.85
rrs 1472607 n.762G>A non_coding_transcript_exon_variant 0.9
rrs 1472612 n.767G>T non_coding_transcript_exon_variant 0.9
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.9
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.9
rrs 1472671 n.826G>A non_coding_transcript_exon_variant 0.89
rrs 1472687 n.842A>G non_coding_transcript_exon_variant 0.89
rrs 1472689 n.844C>T non_coding_transcript_exon_variant 0.89
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.88
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.87
rrs 1472732 n.887G>A non_coding_transcript_exon_variant 0.4
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 0.8
rrs 1472836 n.991G>A non_coding_transcript_exon_variant 0.77
rrs 1472838 n.994dupC non_coding_transcript_exon_variant 0.76
rrs 1472842 n.997G>A non_coding_transcript_exon_variant 0.74
rrs 1472843 n.998A>T non_coding_transcript_exon_variant 0.74
rrs 1472858 n.1013G>C non_coding_transcript_exon_variant 0.73
rrs 1472860 n.1015C>G non_coding_transcript_exon_variant 0.72
rrs 1472861 n.1016G>T non_coding_transcript_exon_variant 0.72
rrs 1472866 n.1023dupT non_coding_transcript_exon_variant 0.74
rrs 1472873 n.1028C>T non_coding_transcript_exon_variant 0.74
rrs 1472874 n.1029C>T non_coding_transcript_exon_variant 0.74
rrs 1472875 n.1030T>G non_coding_transcript_exon_variant 0.74
rrs 1472880 n.1035G>A non_coding_transcript_exon_variant 0.77
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.83
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.9
rrs 1472977 n.1132G>T non_coding_transcript_exon_variant 0.9
rrs 1473005 n.1160C>T non_coding_transcript_exon_variant 0.91
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.91
rrs 1473080 n.1235C>T non_coding_transcript_exon_variant 0.84
rrs 1473089 n.1244A>C non_coding_transcript_exon_variant 0.75
rrs 1473099 n.1254T>G non_coding_transcript_exon_variant 0.74
rrs 1473100 n.1255G>C non_coding_transcript_exon_variant 0.73
rrs 1473102 n.1257C>T non_coding_transcript_exon_variant 0.74
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.74
rrs 1473109 n.1264T>G non_coding_transcript_exon_variant 0.73
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.74
rrs 1473112 n.1267A>T non_coding_transcript_exon_variant 0.33
rrs 1473115 n.1270G>T non_coding_transcript_exon_variant 0.73
rrs 1473120 n.1275C>G non_coding_transcript_exon_variant 0.72
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.72
rrs 1473123 n.1278A>G non_coding_transcript_exon_variant 0.73
rrs 1473134 n.1289T>G non_coding_transcript_exon_variant 0.79
rrs 1473135 n.1290C>T non_coding_transcript_exon_variant 0.8
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.82
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.83
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.91
rrs 1473282 n.1438_1439insGTT non_coding_transcript_exon_variant 0.88
rrs 1473285 n.1441_1448delCCCTCGGG non_coding_transcript_exon_variant 0.89
rrl 1474130 n.473C>T non_coding_transcript_exon_variant 0.55
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.66
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.68
rrl 1474182 n.525C>A non_coding_transcript_exon_variant 0.71
rrl 1474183 n.526T>G non_coding_transcript_exon_variant 0.71
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 0.71
rrl 1474185 n.529delA non_coding_transcript_exon_variant 0.71
rrl 1474197 n.540C>T non_coding_transcript_exon_variant 0.71
rrl 1474199 n.542G>A non_coding_transcript_exon_variant 0.39
rrl 1474202 n.546dupA non_coding_transcript_exon_variant 0.62
rrl 1474253 n.596A>T non_coding_transcript_exon_variant 0.86
rrl 1474263 n.606G>A non_coding_transcript_exon_variant 0.84
rrl 1474266 n.609T>C non_coding_transcript_exon_variant 0.83
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 0.83
rrl 1474311 n.654_655insT non_coding_transcript_exon_variant 0.76
rrl 1474351 n.694G>C non_coding_transcript_exon_variant 0.76
rrl 1474353 n.696A>G non_coding_transcript_exon_variant 0.75
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.75
rrl 1474372 n.717_718insTTGT non_coding_transcript_exon_variant 0.38
rrl 1474384 n.727C>T non_coding_transcript_exon_variant 0.47
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 0.45
rrl 1474399 n.742G>A non_coding_transcript_exon_variant 0.15
rrl 1474402 n.745T>C non_coding_transcript_exon_variant 0.14
rrl 1474411 n.754C>T non_coding_transcript_exon_variant 0.14
rrl 1474412 n.756_765delACCCACACGC non_coding_transcript_exon_variant 0.15
rrl 1474447 n.790G>A non_coding_transcript_exon_variant 0.57
rrl 1474451 n.794T>C non_coding_transcript_exon_variant 0.65
rrl 1474467 n.810A>G non_coding_transcript_exon_variant 0.76
rrl 1474487 n.830G>T non_coding_transcript_exon_variant 0.76
rrl 1474495 n.838G>A non_coding_transcript_exon_variant 0.75
rrl 1474496 n.839C>G non_coding_transcript_exon_variant 0.74
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 0.74
rrl 1474498 n.841G>T non_coding_transcript_exon_variant 0.74
rrl 1474505 n.848C>G non_coding_transcript_exon_variant 0.75
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 0.75
rrl 1474507 n.850G>T non_coding_transcript_exon_variant 0.74
rrl 1474508 n.851C>T non_coding_transcript_exon_variant 0.75
rrl 1474517 n.860C>G non_coding_transcript_exon_variant 0.76
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.76
rrl 1474552 n.895C>T non_coding_transcript_exon_variant 0.39
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 0.48
rrl 1474736 n.1079C>T non_coding_transcript_exon_variant 0.52
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.61
rrl 1474751 n.1094G>A non_coding_transcript_exon_variant 0.6
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 0.62
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.68
rrl 1474784 n.1127C>T non_coding_transcript_exon_variant 0.72
rrl 1474793 n.1136C>T non_coding_transcript_exon_variant 0.18
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.76
rrl 1474798 n.1141C>G non_coding_transcript_exon_variant 0.77
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.81
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.81
rrl 1474824 n.1167A>G non_coding_transcript_exon_variant 0.81
rrl 1474825 n.1168G>A non_coding_transcript_exon_variant 0.81
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.81
rrl 1474837 n.1180A>G non_coding_transcript_exon_variant 0.81
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 0.82
rrl 1474896 n.1239A>G non_coding_transcript_exon_variant 0.74
rrl 1474901 n.1244A>G non_coding_transcript_exon_variant 0.72
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.7
rrl 1474905 n.1248T>C non_coding_transcript_exon_variant 0.7
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 0.7
rrl 1474917 n.1260G>T non_coding_transcript_exon_variant 0.71
rrl 1474918 n.1261T>C non_coding_transcript_exon_variant 0.71
rrl 1474921 n.1264C>T non_coding_transcript_exon_variant 0.71
rrl 1474953 n.1296C>A non_coding_transcript_exon_variant 0.15
rrl 1475057 n.1400G>A non_coding_transcript_exon_variant 0.61
rrl 1475060 n.1404delC non_coding_transcript_exon_variant 0.6
rrl 1475063 n.1406A>T non_coding_transcript_exon_variant 0.62
rrl 1475076 n.1419C>T non_coding_transcript_exon_variant 0.65
rrl 1475088 n.1431A>G non_coding_transcript_exon_variant 0.64
rrl 1475090 n.1433A>T non_coding_transcript_exon_variant 0.64
rrl 1475094 n.1437C>T non_coding_transcript_exon_variant 0.64
rrl 1475108 n.1451C>T non_coding_transcript_exon_variant 0.64
rrl 1475110 n.1454_1457delGGCC non_coding_transcript_exon_variant 0.66
rrl 1475118 n.1461C>T non_coding_transcript_exon_variant 0.66
rrl 1475120 n.1463_1464insTCTT non_coding_transcript_exon_variant 0.67
rrl 1475137 n.1480A>T non_coding_transcript_exon_variant 0.66
rrl 1475170 n.1513A>T non_coding_transcript_exon_variant 0.68
rrl 1475171 n.1514C>T non_coding_transcript_exon_variant 0.67
rrl 1475197 n.1540G>A non_coding_transcript_exon_variant 0.43
rrl 1475202 n.1545G>C non_coding_transcript_exon_variant 0.28
rrl 1475657 n.2000A>G non_coding_transcript_exon_variant 0.22
rrl 1475672 n.2015C>T non_coding_transcript_exon_variant 0.66
rrl 1475673 n.2016T>C non_coding_transcript_exon_variant 0.66
rrl 1475696 n.2039T>A non_coding_transcript_exon_variant 0.74
rrl 1475703 n.2046A>T non_coding_transcript_exon_variant 0.74
rrl 1475704 n.2047C>T non_coding_transcript_exon_variant 0.75
rrl 1475879 n.2222T>C non_coding_transcript_exon_variant 0.9
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.9
rrl 1475883 n.2226A>T non_coding_transcript_exon_variant 0.9
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.9
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 0.91
rrl 1475900 n.2243A>G non_coding_transcript_exon_variant 0.91
rrl 1475902 n.2245T>C non_coding_transcript_exon_variant 0.9
rrl 1475906 n.2249C>T non_coding_transcript_exon_variant 0.9
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 0.91
rrl 1475937 n.2280A>T non_coding_transcript_exon_variant 0.9
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.86
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.86
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.82
rrl 1475989 n.2332T>C non_coding_transcript_exon_variant 0.81
rrl 1475990 n.2333G>A non_coding_transcript_exon_variant 0.82
rrl 1475997 n.2340A>G non_coding_transcript_exon_variant 0.82
rrl 1476023 n.2366C>T non_coding_transcript_exon_variant 0.16
rrl 1476024 n.2367T>G non_coding_transcript_exon_variant 0.27
rrl 1476025 n.2368G>T non_coding_transcript_exon_variant 0.7
rrl 1476029 n.2372A>T non_coding_transcript_exon_variant 0.53
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 0.7
rrl 1476032 n.2375C>A non_coding_transcript_exon_variant 0.7
rrl 1476034 n.2377C>G non_coding_transcript_exon_variant 0.7
rrl 1476035 n.2378G>C non_coding_transcript_exon_variant 0.7
rrl 1476044 n.2387T>G non_coding_transcript_exon_variant 0.69
rrl 1476045 n.2388G>T non_coding_transcript_exon_variant 0.69
rrl 1476047 n.2390G>T non_coding_transcript_exon_variant 0.69
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.7
rrl 1476077 n.2420T>C non_coding_transcript_exon_variant 0.75
rrl 1476082 n.2425T>G non_coding_transcript_exon_variant 0.72
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 0.7
rrl 1476087 n.2430C>T non_coding_transcript_exon_variant 0.7
rrl 1476097 n.2440C>T non_coding_transcript_exon_variant 0.65
rrl 1476099 n.2442A>G non_coding_transcript_exon_variant 0.63
rrl 1476100 n.2443A>C non_coding_transcript_exon_variant 0.63
rrl 1476103 n.2446C>A non_coding_transcript_exon_variant 0.64
rrl 1476105 n.2450delA non_coding_transcript_exon_variant 0.65
rrl 1476110 n.2453G>T non_coding_transcript_exon_variant 0.65
rrl 1476113 n.2456T>G non_coding_transcript_exon_variant 0.66
rrl 1476116 n.2459A>G non_coding_transcript_exon_variant 0.72
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.81
rrl 1476160 n.2503T>C non_coding_transcript_exon_variant 0.86
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.89
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.87
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.87
rrl 1476210 n.2555_2556dupTG non_coding_transcript_exon_variant 0.86
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.86
rrl 1476215 n.2558C>A non_coding_transcript_exon_variant 0.86
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.88
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.92
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.92
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 0.91
rrl 1476298 n.2641C>A non_coding_transcript_exon_variant 0.91
rrl 1476300 n.2643G>T non_coding_transcript_exon_variant 0.91
rrl 1476301 n.2644A>T non_coding_transcript_exon_variant 0.92
rrl 1476307 n.2650A>T non_coding_transcript_exon_variant 0.91
rrl 1476309 n.2652G>T non_coding_transcript_exon_variant 0.91
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.91
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.9
rrl 1476535 n.2878G>A non_coding_transcript_exon_variant 0.88
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.88
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.88
rrl 1476573 n.2916A>T non_coding_transcript_exon_variant 0.84
rrl 1476580 n.2923G>A non_coding_transcript_exon_variant 0.82
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.83
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.83
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 0.82
rrl 1476603 n.2946G>A non_coding_transcript_exon_variant 0.79
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.77
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 0.7
rrl 1476616 n.2959A>G non_coding_transcript_exon_variant 0.65
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.66
rrl 1476624 n.2967T>A non_coding_transcript_exon_variant 0.66
rrl 1476628 n.2971T>G non_coding_transcript_exon_variant 0.66
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 0.67
rrl 1476630 n.2973A>G non_coding_transcript_exon_variant 0.67
rrl 1476661 n.3004A>G non_coding_transcript_exon_variant 0.29
rpsA 1833928 c.387G>C synonymous_variant 0.11
rpsA 1833949 c.408T>C synonymous_variant 0.44
rpsA 1833955 c.414G>C synonymous_variant 0.5
rpsA 1833970 c.429G>C synonymous_variant 0.54
rpsA 1833979 c.438T>C synonymous_variant 0.57
rpsA 1833988 c.447C>G synonymous_variant 0.61
rpsA 1833991 c.450C>A synonymous_variant 0.62
rpsA 1834009 c.468C>T synonymous_variant 0.63
rpsA 1834012 c.471G>C synonymous_variant 0.62
rpsA 1834015 c.474G>C synonymous_variant 0.61
rpsA 1834025 p.Gln162Asp missense_variant 0.59
rpsA 1834030 c.489C>G synonymous_variant 0.6
rpsA 1834040 p.Lys167Gln missense_variant 0.62
rpsA 1834046 p.Ile169Leu missense_variant 0.61
rpsA 1834054 c.513C>G synonymous_variant 0.62
rpsA 1834076 p.Asn179His missense_variant 0.58
rpsA 1834093 c.552G>C synonymous_variant 0.5
rpsA 1834102 c.561T>C synonymous_variant 0.35
rpsA 1834105 c.564C>T synonymous_variant 0.32
rpsA 1834110 p.Trp190Tyr missense_variant 0.29
rpsA 1834118 p.Gln193Glu missense_variant 0.26
rpsA 1834131 p.Glu197Ala missense_variant 0.12
rpsA 1834183 c.642T>C synonymous_variant 0.16
rpsA 1834195 c.654G>C synonymous_variant 0.3
rpsA 1834210 c.669C>T synonymous_variant 0.34
rpsA 1834234 c.693G>C synonymous_variant 0.4
rpsA 1834240 c.699T>C synonymous_variant 0.39
rpsA 1834249 c.708T>C synonymous_variant 0.35
rpsA 1834255 c.714C>T synonymous_variant 0.34
rpsA 1834261 c.720A>G synonymous_variant 0.34
rpsA 1834264 c.723G>C synonymous_variant 0.34
rpsA 1834294 c.753G>T synonymous_variant 0.39
rpsA 1834298 p.Gln253Ala missense_variant 0.38
rpsA 1834303 c.762T>G synonymous_variant 0.37
rpsA 1834306 c.765T>C synonymous_variant 0.36
rpsA 1834321 c.780C>G synonymous_variant 0.35
rpsA 1834451 c.910_912delTTGinsCTC synonymous_variant 0.19
rpsA 1834456 c.915T>C synonymous_variant 0.25
rpsA 1834465 c.924T>C synonymous_variant 0.32
rpsA 1834468 c.927A>G synonymous_variant 0.33
rpsA 1834489 c.948T>C synonymous_variant 0.31
rpsA 1834492 c.951C>T synonymous_variant 0.3
rpsA 1834501 c.960G>C synonymous_variant 0.29
rpsA 1834504 c.963G>C synonymous_variant 0.29
rpsA 1834522 c.981C>T synonymous_variant 0.26
rpsA 1834523 p.Glu328Gln missense_variant 0.26
rpsA 1834528 c.987T>C synonymous_variant 0.25
rpsA 1834534 c.993C>G synonymous_variant 0.25
rpsA 1834540 c.999G>C synonymous_variant 0.25
rpsA 1834543 c.1002C>G synonymous_variant 0.25
rpsA 1834546 c.1005T>C synonymous_variant 0.25
rpsA 1834552 c.1011G>T synonymous_variant 0.24
rpsA 1834555 c.1014T>C synonymous_variant 0.24
rpsA 1834556 p.Ala339Asn missense_variant 0.24
rpsA 1834567 p.Asp342Glu missense_variant 0.24
rpsA 1834570 p.Asp343Glu missense_variant 0.24
rpsA 1834572 p.Ala344Val missense_variant 0.24
rpsA 1834603 p.Glu354Asp missense_variant 0.17
rpsA 1834637 p.Asn366Asp missense_variant 0.14
rpsA 1834649 p.Thr370Val missense_variant 0.14
rpsA 1834663 c.1122C>T synonymous_variant 0.14
rpsA 1834688 c.1147_1149delAGTinsTCC synonymous_variant 0.15
rpsA 1834720 c.1179C>G synonymous_variant 0.15
rpsA 1834859 p.Ala440Thr missense_variant 1.0
tlyA 1917972 c.33A>G synonymous_variant 1.0
ndh 2102706 p.Asp113His missense_variant 1.0
ndh 2103173 c.-132delG upstream_gene_variant 1.0
katG 2154724 p.Arg463Leu missense_variant 1.0
katG 2155503 c.609C>T synonymous_variant 1.0
katG 2156025 c.87C>A synonymous_variant 1.0
PPE35 2167926 p.Leu896Ser missense_variant 1.0
PPE35 2168011 p.Ser868Arg missense_variant 1.0
PPE35 2168814 c.1798dupA frameshift_variant 1.0
Rv1979c 2222308 p.Asp286Gly missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 0.99
kasA 2518132 c.18C>T synonymous_variant 1.0
Rv2752c 3065372 p.Arg274Gly missense_variant 1.0
ald 3086728 c.-92C>T upstream_gene_variant 1.0
ald 3086788 c.-32T>C upstream_gene_variant 1.0
ald 3087084 c.266delA frameshift_variant 1.0
Rv3083 3448783 p.Val94Ile missense_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
fprA 3474427 p.Val141Ile missense_variant 0.99
fprA 3475159 p.Asn385Asp missense_variant 1.0
alr 3841474 c.-54T>G upstream_gene_variant 1.0
rpoA 3878630 c.-124delC upstream_gene_variant 0.98
clpC1 4038403 c.2302T>C synonymous_variant 1.0
clpC1 4038671 c.2034T>C synonymous_variant 0.19
clpC1 4038683 c.2022T>C synonymous_variant 0.34
clpC1 4038686 c.2019C>T synonymous_variant 0.36
clpC1 4038694 p.Ser671Ala missense_variant 0.44
clpC1 4038704 c.2001T>C synonymous_variant 0.48
clpC1 4038707 c.1998C>G synonymous_variant 0.49
clpC1 4038710 c.1995G>C synonymous_variant 0.48
clpC1 4038713 c.1992T>C synonymous_variant 0.47
clpC1 4038743 p.Thr654Asn missense_variant 0.52
clpC1 4038749 c.1956C>T synonymous_variant 0.53
clpC1 4038755 c.1950G>C synonymous_variant 0.54
clpC1 4038766 p.Leu647Val missense_variant 0.54
clpC1 4038767 p.Arg646His missense_variant 0.55
clpC1 4038773 p.Asp644Glu missense_variant 0.56
clpC1 4038776 c.1929G>A synonymous_variant 0.56
clpC1 4038788 c.1917G>C synonymous_variant 0.58
clpC1 4038794 p.Ser637Thr missense_variant 0.58
clpC1 4038811 p.Gln632Lys missense_variant 0.6
clpC1 4038812 c.1893T>C synonymous_variant 0.59
clpC1 4038836 c.1869G>T synonymous_variant 0.5
clpC1 4038845 c.1858_1860delTCGinsAGC synonymous_variant 0.39
clpC1 4038848 c.1857C>T synonymous_variant 0.38
clpC1 4038860 c.1845G>C synonymous_variant 0.4
clpC1 4038863 c.1842G>T synonymous_variant 0.41
clpC1 4038878 c.1827A>G synonymous_variant 0.35
clpC1 4038887 c.1818G>A synonymous_variant 0.32
clpC1 4038890 c.1815G>A synonymous_variant 0.32
clpC1 4038908 c.1797C>G synonymous_variant 0.32
clpC1 4038911 c.1794G>T synonymous_variant 0.31
clpC1 4038914 c.1791G>A synonymous_variant 0.32
clpC1 4038923 c.1782A>C synonymous_variant 0.36
clpC1 4038926 c.1779G>C synonymous_variant 0.35
clpC1 4038932 c.1773G>C synonymous_variant 0.36
clpC1 4038935 c.1770C>T synonymous_variant 0.34
clpC1 4038941 c.1764G>C synonymous_variant 0.33
clpC1 4038953 c.1752A>G synonymous_variant 0.31
clpC1 4038956 c.1749T>C synonymous_variant 0.28
clpC1 4038965 p.Ile580Val missense_variant 0.19
clpC1 4038971 c.1734T>C synonymous_variant 0.16
clpC1 4038974 c.1731T>G synonymous_variant 0.17
clpC1 4038979 p.Ala576Ser missense_variant 0.16
clpC1 4038989 c.1716T>C synonymous_variant 0.15
clpC1 4038997 c.1708T>C synonymous_variant 0.15
clpC1 4039001 p.Asn568Glu missense_variant 0.16
clpC1 4039007 c.1698G>C synonymous_variant 0.15
clpC1 4039022 c.1683A>G synonymous_variant 0.15
clpC1 4039025 c.1680C>G synonymous_variant 0.16
clpC1 4039034 c.1671C>G synonymous_variant 0.14
clpC1 4039061 c.1644G>C synonymous_variant 0.13
clpC1 4039610 c.1095G>C synonymous_variant 0.19
clpC1 4039616 c.1089G>C synonymous_variant 0.19
clpC1 4039636 p.Glu357Gln missense_variant 0.16
clpC1 4039637 p.Ile356Val missense_variant 0.16
clpC1 4039645 p.His354Asp missense_variant 0.17
clpC1 4039646 c.1059G>A synonymous_variant 0.17
clpC1 4039651 p.Val352Leu missense_variant 0.17
clpC1 4039652 p.Thr351Ser missense_variant 0.17
clpC1 4039661 p.Gly348Asp missense_variant 0.16
clpC1 4039673 c.1032G>T synonymous_variant 0.16
clpC1 4039691 c.1014G>T synonymous_variant 0.16
clpC1 4039694 c.1011G>C synonymous_variant 0.16
clpC1 4039697 c.1008C>G synonymous_variant 0.16
clpC1 4039706 c.999G>A synonymous_variant 0.17
clpC1 4039709 c.996C>T synonymous_variant 0.17
clpC1 4039714 p.Tyr331His missense_variant 0.17
clpC1 4039724 c.981A>G synonymous_variant 0.23
clpC1 4039730 c.975C>G synonymous_variant 0.28
clpC1 4039742 c.963C>T synonymous_variant 0.23
clpC1 4039748 c.957G>C synonymous_variant 0.21
clpC1 4039751 c.954A>G synonymous_variant 0.22
clpC1 4039754 c.951G>C synonymous_variant 0.23
clpC1 4039760 c.945T>C synonymous_variant 0.33
clpC1 4039769 c.936C>G synonymous_variant 0.37
clpC1 4039778 c.927A>G synonymous_variant 0.37
clpC1 4039784 p.Ile307Leu missense_variant 0.36
clpC1 4039790 c.915C>T synonymous_variant 0.36
clpC1 4039793 c.912C>A synonymous_variant 0.36
clpC1 4039802 c.903G>C synonymous_variant 0.38
clpC1 4039805 c.900C>T synonymous_variant 0.39
clpC1 4039811 c.894C>G synonymous_variant 0.4
clpC1 4039817 c.888A>T synonymous_variant 0.39
clpC1 4039820 c.885T>G synonymous_variant 0.4
clpC1 4039823 c.882T>C synonymous_variant 0.4
clpC1 4039829 c.874_876delTTGinsCTC synonymous_variant 0.42
clpC1 4039838 p.Leu289Ile missense_variant 0.44
clpC1 4039850 c.855T>C synonymous_variant 0.51
clpC1 4039865 c.840T>C synonymous_variant 0.46
clpC1 4039871 p.Thr278Gln missense_variant 0.45
clpC1 4039898 c.807C>G synonymous_variant 0.44
clpC1 4039910 c.795C>T synonymous_variant 0.32
clpC1 4039916 c.789T>C synonymous_variant 0.28
clpC1 4039925 c.780C>T synonymous_variant 0.26
clpC1 4039929 c.775_776delAGinsTC synonymous_variant 0.27
clpC1 4039943 c.762G>C synonymous_variant 0.26
clpC1 4039946 c.759A>T synonymous_variant 0.24
clpC1 4039952 c.753T>C synonymous_variant 0.25
clpC1 4039958 p.Thr249Ser missense_variant 0.24
clpC1 4039966 p.Leu247Val missense_variant 0.23
clpC1 4039973 p.Asp244Glu missense_variant 0.23
clpC1 4039979 c.726C>G synonymous_variant 0.2
clpC1 4040045 c.660C>G synonymous_variant 0.15
clpC1 4040048 c.657C>T synonymous_variant 0.2
clpC1 4040063 c.642G>C synonymous_variant 0.25
clpC1 4040087 c.618G>C synonymous_variant 0.29
clpC1 4040090 c.615T>G synonymous_variant 0.29
clpC1 4040093 c.612C>G synonymous_variant 0.29
clpC1 4040108 c.597G>C synonymous_variant 0.27
clpC1 4040117 c.588A>G synonymous_variant 0.27
clpC1 4040123 p.Glu194Asp missense_variant 0.26
clpC1 4040134 p.Ile191Val missense_variant 0.25
clpC1 4040135 c.570C>T synonymous_variant 0.25
clpC1 4040144 c.561G>C synonymous_variant 0.25
clpC1 4040147 c.558A>G synonymous_variant 0.25
clpC1 4040157 p.Met183Lys missense_variant 0.27
clpC1 4040162 c.543G>C synonymous_variant 0.27
clpC1 4040168 c.537G>C synonymous_variant 0.28
clpC1 4040192 c.513C>G synonymous_variant 0.2
embC 4240671 p.Thr270Ile missense_variant 0.99
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4242970 c.-263C>T upstream_gene_variant 1.0
embA 4244220 c.988C>T synonymous_variant 1.0
embB 4246551 p.Asn13Ser missense_variant 1.0
embB 4246864 c.351C>T synonymous_variant 1.0
embB 4247646 p.Glu378Ala missense_variant 1.0
aftB 4267858 p.Ile327Val missense_variant 1.0
aftB 4269351 c.-515C>T upstream_gene_variant 1.0
ubiA 4269387 p.Glu149Asp missense_variant 1.0
aftB 4269606 c.-770T>C upstream_gene_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0